lowQualScore : 99999999999 1 22222222 1 333333333333333 1111111 1111 111 11 1 1 1111111 111111 1 44444444444444444 1111111111 1111111111 1111111 3333333333333333333 111111 111 11111111111111 1111 11 1111 333333333333333333333 111111 222222222 1111111111
lowQualScore : 55555555555 7 6 5 4 2 00000000 6 111111111111111 5 5 888 6666666 6 66 666 666 7777 3 2 44 222 3 88 3 3 3 2 77 8 55 5 3 55 55 4 1111111 3 77 999999 8 00000000000000000 666 5555555555 7777777777 3333333 1 4 4 1111111111111111111 111111 0 222 3 9 66666666666666 55 6666 1 3 2 33 555 3 3 3 4 0000 999999999999999999999 111111 4 555555555 7777777777
lowQualScore : ........... . . . . . ........ . ............... . . ... ....... . .. ... ... .... . . .. ... . .. . . . . .. . .. . . .. .. . ....... . .. ...... . ................. ... .......... .......... ....... . . . ................... ...... . ... . . .............. .. .... . . . .. ... . . . . .... ..................... ...... . ......... ..........
lowQualScore : 00000000000 3 0 0 0 5 77777777 7 222222222222222 0 0 888 2222222 9 33 444 444 4444 1 0 22 555 6 33 6 6 6 3 44 0 55 0 6 00 00 5 8888888 3 99 222222 5 00000000000000000 444 9999999999 5555555555 0000000 6 0 0 0000000000000000000 555555 8 111 6 5 88888888888888 00 1111 4 3 0 55 444 1 3 6 0 4444 777777777777777777777 555555 0 666666666 1111111111
consensus : TCTCCCTCCATAACCCTATTCACCCTAACCCTATATCTCATGTTCCACATTTCCTGAGCGTTTTTAATCTCTTTTCTTTACTTTTTGNATCTGTATTTGTATACACGCANACGCACGCACGCACATCCCGGGGAAA--------TTTCAAACGTCAATCAGATGCTGCATTCTA---------------AAA-TGTT-CGTGTGAAAATTGAATTCTCTGATG---CT-------AATCCTTATGGTGATAAATNGTCTTATGTT-AT---T---TT---GTATTACCATTTTCCTTATACTGAT-CCANTCC-GTGGCAGGTTTGGTGGAAA-AA-AA-GCAAGCTATAGATCTACATAGCTCAG-GT-TA--TTTTTGAGAAAA-TG--CA--GTGACATATTAT-------ACCAACGTTT-T--CATT------AAAACTTGCTTAGAT-----------------TTGTGTTTATGTA---CTG----------CACTA----------AAGAGG-------TTATGTACACTCAA-CAG-GT-------------------GTCATTGTACAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTC------TGAC-AATAT-CTTTTGAACAAATGTAATAGATATGCACACGAACTGCGCAAATTGAA---------C--AGA--AAGCGTA---TCTTTATAGTATATATTTATGCAGACGTT-AATATA-TTTTTAT---ATTT-GGTTTTAAATCCAAAA-CACAAAATATCTGAATGTCT-CGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTAC---AATT---C----A----TTCATTCATTCCAAAAT------TAAA-T---------AT---T------TGTATATATGAGACAT
Reference ( gi|2 ) : TCTCTCTCT-----------CACCCTAACCCTATATCTCATGTTCCACATTTCCTGAGCGTTTTTGATATCTTTTCTTTACTTTTTGAATCTGTATTTGTATACACGCACACGTACGCACGCACATCCCGGGGAAA--------TTTCAAACGTCAATCAGTTGCTGCATTCTA---------------AAA-TGTT-TGTGTGAAAATTGAATTCTCTGATG---CT-------AATCCTTATGGTGATAAATAGTCTTATGTT-AT---T---TT---TTGTTACCATTTTCCTTATACTGAT-TCACCTC-GTGGCAGGTTTGGTGGGAA-AA-AA-GCAAGCTATTGATCTACATAGCTCAA-GT-TA--TTTTTGAGAACA-TG--CA--GTGACATATCAT-------ACCAACGTTT-T--CATT------AAATCTTGCTTAGAT-----------------TTGTGTTTATGTA---CTG----------CACTA----------AAGAGG-------TTATGTACACTCAA-CAG-GT-------------------GTCATTGTACAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTC------TGAC-ACTAT-CTTTTGAACAAATGTAATAGATATTCACACGAACTGCGCAAATTGAA---------C--ACA--AAGCGTT---TCTTTATAGTATATATTTATGCAGACGTT-AATGTA-GTTTTAT---ATTT-GGTTTTAAATCCAAAA-CACAAAATATCTGAATGTCT-CGTACTTATATGATTTTAAA-TAAT---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTAT---AATT---C----A----TTCATTCATTCCAAAAT------TAAA-T---------AT---T------TGTATATATGAGACAT
gi|17 : TCTCTCTCTATAACCCTATTCACCCTAACCCTATATCTCATGTTTTACATTTCCTGAGCGTTTTTAATCTCTTTTCTTTACTTTTTGAATCTGTTTTTGTAT
gi|16 : aaactaatcaataaacaatcgatttacctttagggagctcctcttatgtttcttaaattctctctcCTCCCTCC-----------CTCCCT--CCCTATATCTCATGTTCCACATTTCCTGAGCGTTTTTAATCTCTTTTCTTTACTTTTTGTATCTGTATTTGTATcaaggag
gi|1 : aaactaatcaataatcaatcgatttacctttagggagctcctcctatgtttctaaaattctctcctctctgcctacctgcctctctctctctctctccACCGTAACTCAATATCTCATGTACCACATTTTCTGAACGTTTTTAATCTCTTTTCTTTACTTTTTGTATCTGTATcaaggagtttgtgggaagggtaagcccgcccccccccccccc
gi|3 : TCTTTTCTTTACTTTTTGAATCTGTATTTGTATACACGCACACGTATGCACGCACATCCCGGGGAAA--------TTTCAAACGTCAATCAGATGCTGCATTCTA---------------AAA-TGTT-TGTGTGAAAATTGAATTCTCTGATG---CT-------TATCCTTATGGTGATAAATAGTCTGATGTT-AT---T---TT---GTATTACCATTTTCCTTATACTGAT-CCACCTC-GTGGCAGGTTTGGTGGAAA-AA-AA-GCAAGCTATTGATCTACATAGCTCAA-GT-TA--TTTTTGAGAAAA-TG--CA--GTGACATATTAT-------ACCAACGTTT-T--CATT------AAATCTTGCTTAGAT-----------------TTGTGTTTATGTA---CTG----------CACTcaaggagtttgtgggaaggggaatgccctccagctggtgacggaacgggtgcaccccaccccacaccccggggaaatttcaaacgtcaatcagatgctgcattctaaaatgttcgtgtgaaaattgaattctctgatgcttatcgttatggtggtaaattgttttatgttattttatattaccattttccttatactaattcagtccgtggcaggtgtggtgaagaaaagcaagctacagatctacatagcttagtttaattttgagaaaatgcacagtgatatattataccaacgttttcattaaaacttgctttgatttgtgtttatgtactgcactaaagaagttatttacacaaaaccggtgtcattgtacaacgactgcaagcttgtattacgcacacaattataaaagcttttgaacaaatgtaatagatatgcacacgaactgcgcaaattaaacagaaagcttatgtttataggaaataattatgcagacgttaatatattttttatttttggttttaaattcaaaatacaaaatacctgaatgtctcgtacttttatgattttaaattaatatgttttataacgattttgttgctgcgtattcgcttattagaataagacttcatttattccaaaattaaataccaatgaaatatgtatatatgggaaatgatcatcgcattc
gi|24 : CAAACACACACACACACATACCCGGGACA--------TTT-----G--AATCAGATGCTGCATTTTA---------------AAA-TGTT-CGTGTGAAAATTGAATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttttgaacaaatgtaatagatattcacacgaactgcacaaattgaacagaaagcgtttctttatagtatatatttatgcagacgttaatgtagttttatatttggttttaaatccaaaacacaaaatatctgaatgtttcgtacttatatgattttaaataatttttattacgattttgttgctgagtattctcttacaattcattcattcattccaaaattaaatatttgtatatatgagacatgagcatccca
gi|1 : CACACCCCGGGGAAA--------TTTCAAACGTCAATCAGATGCTGCATTCTA---------------AAA-TGTT-CGTGTGAAAATTGAATTCTCTGATG---CT-------TATCGTTATGGTGGTAAATTGTTTTATGTT-AT---T---TT---ATATTACCATTTTCCTTATACTAAT-TCAGTCC-GTGGCAGGTGTGGT-GAAG-AA-AA-GCAAGCTACAGATCTACATAGCTTAG-TT-TA--ATTTTGAGAAAA-TGCACA--GTGATATATTAT-------ACCAACGTTT-T--CATT------AAAACTTGCTTTGAT-----------------TTGTGTTTATGTA---CTG----------CACTA----------AAGAAG-------TTATTTACACAAAA-CCG-GT-------------------GTCATTGTACAACGACTGCAAGCTTGTATTACGCACACAATTATAAAA----------G---------CTTTTGAACAAATGTAATAGATATGCACACGAACTGCGCAAATTAAA---------C--AGA--AAGCTTA---TGTTTATAGGAAATAATTATGCAGACGTT-AATATATTTTTTAT---TTTT-GGTTTTAAATTCAAAA-TACAAAATACCTGAATGTCT-CGTACTTTTATGATTTTAAATTAATATGTTTTATAACGATTTTGTTGCTGCGTATTCGCTTATTAGAAT---------AAGACTTCATTTATTCCAAAAT------TAAA-TACCAATGAAAT---A------TGTATATATGGGAAAT
gi|4 : accgtaactcaatatctcatgtaccacattttctgaacgtttttaatctcttttctttactttttgtatctgtatcaaggagtttgtgggaaggggaatgccctccagctggtgacggaacgggtgcaccccacccACATCCCGGGGAAA--------TTTCAAACGTCAATCAGATACTGCATTCTA---------------AAA-TGTT-TGTGTGAAAATTGAATTCTCTGATG---CT-------AATCCTTATGGTGATAAATAGTCATATGTT-AT---T---TT---GTATTACCATTTTCCTTATACTGAT-CCACCTC-GTGGCAGGTTTGGTGG-AA-AA-AA-GCAAGCTATAGATCTACATAGCTCAA-GT-TA--TTTTTGAGAAAA-TG--CA--GTGACATATTAT-------ACCAACGTTT-TT-CATT------AAATCTTGCTTAGAT-----------------TTGTGTTTATGTA---CTG----------CACTA----------AAGAGG-------TTATGTACACTCAA-CAG-GT-------------------GTCATTGTACAAAGAATGACAACTAGTATTACGCATACTATTATAAAACTC------TGAC-ACTAT-CTTTTGAACAAATGTAATAGATATTCACATGAACTGCACAAAgatcatcgcattc
gi|15 : CACCCCGGGGGAAATTTGCTATTTCAAACGTCAATCAAATGCTTTATTCTAGCGATTTTAAGATTAAAACTGTT-TGTGTGGAAATGGACTTCTCTGATG---CT-------AATCCTTATGGTGCTAAATTGTCTCATGTT--T---T---TTGCATCATTACCCTTTCCCTCATATTGCT-TCAATCC-GTAGCAGGTTCG--GAGAA-GA-AA-TCAAGCTATATATCTATATTGCTC-G-GTATAATTCTTTGAAAA-A-TA--CA--CT---ATA-CAT-------A-----GTTTCT--CATC------AAAcagttttatatttggttttaaatccaaaacacaaaatatctgaatgtctcgtacttatatgattttaaataacttttataacgattttgttgctgagtattctcttacaattcatttattcattcattccaaaattaaatatttgtatatatgagacatgagcatccaattat
gi|29 : CATCCCAGGGAAA--------GTTCAAACGTTAATCAGATGCTATGTT--------------------A-T-TT-TGTGT
gi|12 : A--------TTTCAAACGTCAA--A--TGCTGCATTCTA---------------
gi|25 : gatggggaagcccccctccagctggtggggtaccaggatctccacttagaaaaaaataat---------------AAA-TGTT-TGTGTGAAAATGGAATTCTCTAATGCTTCT-------AATCCTTATGGTCATACATTGTCTCATGTT--T---T---Tgcggtttttaagattaaaatttatattcgtatgtttgtgctagttaatagttgttgcgtacggggatggaattgtcggatgttgttattgaatcattatggcgatgaatgcattatggtgatgaatgcatcgtgtcatcctttctcccatattgctcaaatcagtggcaggcgtggtgaagacagctataatatatagctcggtgtgggctaggcctagttctttgagaaaatac
gi|12 : -TGTTGCGTACGGGGATGGAATTGTCGGATG---TTGTTATTGAATCATTATGGCGATGAAT-GCATTATGGTGATGAATGCATC---GTGTCATCCTTTCTCCCATATTG-C-TCAAATCAGTGGCAGGCGTGGTG--------AA-GACAGCTA-TAA--TATATAGCTC
gi|5 : gatggggaagcccccctccagctggtggggtaccaggatctccacttagaaaaaaataatatttcaaacgtcaaatgctgcattctagcggtttttaagattaaaatttatattcgtatgtttgtgctagttaatagtTGAATTCTCTGATG---CT-------AATCCTTATGGTGATAAATAGTCTTATATT-AT---T---TT---GTATAACCATTTTCCTTATACTGAT-CCACTCC-GTGGCAGGTTTGGTGGAAA-AAAAA-GCAAGCTATAGATCTACATAGCTCAA-GT-TA--TTTTTGAGAAAA-TG--CA--GTAACATATTAT-------ACCAACGTTT-T--CATT------AAAACTTGTTTAGAT-----------------TTGTGTTTATGTA---CTG----------CACTA----------AAGAGG-------TTATGCACACTCAA-CAG-GT-------------------GTCATTGTACAAAGAATGACAGCTAGTATTATGCATAATATTATAAAACTC------TGAC-GATAT-CTTTTGAACAAATGTAATAGATATACACACGAACTGCGCAAATTGAA---------T--AGA--AAGCGTA---TCTTTATAATATATATTTATGCAGACATT-AATATA-TTTTTAT---ATTT-GGTTTTAAATCCAAAA-CACAAAATATCTAAATGTCT-CGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTAC---A-----------A----TTCATTCATTCCAAAAT------AAAA-T---------AT---T------TGTATATATGAGACATggtgtgggctaggcctagttctttgagaaaatac
gi|6 : cTGAATTCTCTGATG---CT-------AATCCTTATGGTGATAAATAGTCTTATATT-AT---T---TT---GTATAACCATTTTCCTTATACTGAT-CCACTCC-GTGGCAGGTTTGGTGGAAA-AA-AAAGCAAGCTATAGATCTACATAGCTCAA-GT-TA--TTTTTGAGAAAA-TG--CA--GTAACATATTAT-------ACCAACGTTT-T--CATT------AAAACTTGTTTAGAT-----------------TTGTGTGTATGTA---CTG----------CACTA----------AAGAG--------TTATGCACACTCAA-CAG-GT-------------------GTCATTGTACAAAGAATGACAGCTAGTATTACGCATAATATTATAAAACTC------TGAC-GATAT-CTTTTGAACAAATGTAATAGATATGCACACGAACTGCGCAAATTGAA---------T--AGA--AAGCGTA---TCTTTATAATATATATTTATGCAGACATT-AATATA-TTTTTAT---ATTT-GGTTTTAAATCCAAAA-CACAAAATATCTAAATGTCT-CGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTATCTTAC---A-----------A----TTCATTCATTCCAAAAT------AAAA-T---------AT---T------TGTATATATGAGACATgatcatcccatt
gi|13 : T-AT---T---TT---GTGTCACCATCTTCCTTATACTGCT-CCATTCC-GTGGCAGGTTTGGTGGAAA-AA-AC-GCAAACTATAGATCAACATAGCTCAG-TT-TA--TTTTTGAGAAAA-TG--CA--GTGACATATTAT-------ACCAACGTTT----CATT------AAA-CTTGCTTAGAT-----------------TTGTGCTTATGTA---TTG----------CACTA----------AAGAGG-------TTATGTACACTAAA-CAG-GA-------------------GTCATTGCACAGAGAATGACAGCTAGTATTACGCATACTATTATAAAACTgatcatcccatt
gi|9 : T---T---TT---GTATTACCATCCCCCTT-TATTGCC-CCAATCC-AGGGCAGGTTTGATG--AA-GA-AA-GCAAGCTCTACATCTATATGGCTCA--GTATA--T--------ACA-----CT--GTGATATATTAT-------ACCAACTTTG-T--AACTCAGCCCAAA-CTTACTTGGATGGTATATGT--------TTGTGTTTATGCA---ATG----------CATTATTAAGTAATAAAGAGGAGAACACTTAAATGTATTAAA-TAACGT-------------------TTCATTGTGTAATGAATGACAAATAGAAGTACACATACTATTGTAAAACTCGGGCAATGATGAATGT-CTTTTAAACAAATTTAATGGGTATGCACACGTATATCGCAAATTTAAAAGATTATTC--ATATTTAGCATA---AGTTTACAGGTTATATTCATGCCGATGTTAAATACA-A-TTTATTTGATTT-GGTTTGAGATTCAAAA-CACTAAAgcgcaaattaaacagaaagcgtatctttatagtatatatttatgcggacgttaatatatttttatatct
gi|7 : g---T---TT---TTACT-TTATTTTCCTTATACTGAT-CCAGTCC-GTGGCAGGTTTGGTG--AA-AA-AA-GCAAGCTATAAATAAACATAGCTCAG-TT-TA--ATTTTGAGAAAA-TG--CACAGTGATATATTAT-------ACCAACGTTT-T--TTTT------AAAACTTGCTAAGAT-----------------TTGTGTTTAAAAA---CTG----------CACAA----------AAGAGA-------TTGTGTACACTAAA-CAG-GT-------------------GTCATTGTACAAAGAATGACAGCTTGTATTACGCATACTATTATAAATCTA------TGAC-AATAT-CTTTTGAATAAATATAATAAAAATACACACGAACTGCGCATATTAAA---------C--AGA--AAGTGGTGTATGTTTATAGTATATAGTAATGCAGACGTA-AATATA-TTTTCAT---ATTT-GGGTTTAAATTCAAAA-CACAAAATATCTGAATGTCT-CGTACTGATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTACTAGAATTAGAC---------TTCATTCATTCCAAAATTACATATAAA-TGAA------AT---G------TGTATATATGAGACAT
gi|8 : TATTACTGTTTTCCT------GATGTC----C-ATGGCAGGTTTGGT---AATGA-AA-GCAAGCTGTAGAATTATATAGCACAGTAT-AA--TTCTTAAGAAAAATA--CA--CTGATATATTATTAATTATACCAACTTTT-T--CATTCAGCCCAAA-CTTAATTAAATGAATGATTTGTGAATATTTGTGTTTATGCAATGCTGTTATTGAATACACTA----------AAGAGG---------A-GCATGCTTAAACAA-GTATTTGGTGTTAAATATCATGTCATTGTATAATGAATGACAGCTAGCATTACGCATAATATTATAAAACTC------TG---TTTATGATTTTGAACAAATTTAA-AAAAATGCAT----ATTTTTTATATTTAG---------CTTATA--A---------TATTTACTGTGTTTATTCATGCTAGCATT-AA-ATA-CACTTA----ATTT-GATTTT-------GAA-CACAA--------AATGTCT-TACACTTTTATGATTTCAGA-gagcatcgcattc
gi|10 : A-TG--CA--GTGACATATTAT-------ACCAACGTTT-T--CATT------AAAACTTGCTTAGAT-----------------TTGTGTTTATGTA---CTG----------CACTA----------AAGAGG-------TTATGTACACTCAA-CAG-GT-------------------GTCATTGTACAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTC------TGAT-AATAT-ATTTTGAAAAAATGTAATAGATATGCACACGGACTGCACAAATTGAA---------C--AGA--AAGCGTA---TCTTTATAGTATATATTTATGCAGACGTA-AATATA-TTTTTAT---ATTT-GGTTTTAAATCCAAAA-CACAAAATATCTGAATGTCT-CGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGATGAGTATTCTC-TAC---ATTT---C----A----TTCATTCATTCCAAAAT------TAAA-T---------AT---T------TGTATGTATGAGACAT
gi|11 : aaGTTT-TGTCATT------AAAACTTACTTAGAT-----------------TTGTGTTTATGTA---CTG----------CACTA----------AA------------TATGTACACTCAA-CAG-GT-------------------GTCATTGTACAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTC------TGAC-AATAT-CTTTTGAACAAATGTAATAGATATGCTCACGAACTGCGCAAATTGAA---------C--AGA--AAGCGTA---TGTTTATAGTATGTATTGATGCAGACGTT-AATATA-TTTTTAT---ATTT-GGTTTTAAATCCAAAA-CACAA--------AATGTCT-CGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTAC---AATG---T----A----TTCATTCATTCCAAAA-------TAAA-catcccac
gi|14 : tgtatcaaggaATACTATTATAAAACTC------TGAC-ACTAT-CTTTTGAACAAATGTAATAGATATTCACACGAACTGCGCAAATTGAA---------C--AGA--AAGCGTT---TCTTTATAGTATATGTTTATGCAGACGTT-AATGTA-GTTTTAT---ATTT-GGTTTTAAATCCAAAA-CACAAAATATCTGAATGTCT-CGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTAC---AATT---C----A----TTCATTCATTCCAAAAT------TAAAGT---------AT---T------TGTATATATGAGACAT
gi|3 : -CTTTTGAACAAATGTAATAGATATTCACACGAACTGCACAAATTGAA---------C--AGA--AAGCGTT---TCTTTATAGTATATATTTATGCAGACGTT-AATGTA-GTTTTAT---ATTT-GGTTTTAAATCCAAAA-CACAAAATATCTGAATGTTT-CGTACTTATATGATTTTAAA-TAAT---TTTTATTACGATTTTGTTGCTGAGTATTCTCTTAC---AATT---C----A----TTCATTCATTCCAAAAT------TAAA-T---------AT---T------TGTATATATGAGACATgagcatcccatta
gi|19 : tcttttctttactttttgaatctgtatttgtatacacgcacacgtatgcacgcacatcccggggaaatttcaaacgtcaatcagatgctgcattctaaaatgtttgtgtgaaaattgaattctctgatgcttatccttatggtgataaatagtctgatgttattttgtattaccattttccttatactgatccacctcgtggcaggtttggtggaaaaaaagcaagctattgatctacatagctcaagttatttttgagaaaatgcagtgacatattataccaacgttttcattaaatcttgcttagatttgtgtttatgtactgcactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGAACAAATTCAATAGATTTACACACAAACGGTGCTAATTgagcatccca
gi|13 : acacaagtacaaatatatcttatgcacgatataatgAACTGCGCAAATTAAA---------C--AGA--AAGCGTA---TCTTTATAGTATATATTTATGCGGACGTT-AATATA-TTTTTAT---ATCT-tataaacgaatgcttatgttttag
gi|1 : tattttgtgtcaccatcttccttatactgctccattccgtggcaggtttggtggaaaaaacgcaaactatagatcaacatagctcagtttatttttgagaaaatgcagtgacatattataccaacgtttcattaaacttgcttagatttgtgcttatgtattgcactaaagaggttatgtacactaaacaggagtcattgcacagagaatgacagctagtattacgcatactattataaAGACATT-CAGGTA--TTTTGT---ATTTTGAATTTAAAACCAAAAATAAAAAATATATTAACGTCTGCATAATTAT
gi|4 : accgtaactcaatatctcatgtaccacattttctgaacgtttttaatctcttttctttactttttgtatctgtatcaaggagtttgtgggaaggggaatgccctccagctggtgacggaacgggtgcaccccaccccacaccccggggaaatttcaaacgtcaatcagatgctgcattctaaaatgttcgtgtgaaaattgaattctctgatgcttatcgttatggtggtaaattgttttatgttattttatattaccattttccttatactaattcagtccgtggcaggtgtggtgaagaaaagcaagctacagatctacatagcttagtttaattttgagaaaatgcacagtgatatattataccaacgttttcattaaaacttgctttgatttgtgtttatgtactgcactaaagaagttatttacacaaaaccggtgtcattgtacaacgactgcaagcttgtattacgcacacaattataaaagcttttgaacaaatgtaatagatatgcacacgaactgcgcaaattaaacagaaagcttatgtttataggaaA-GTTTTAT---ATTT-GGTTTTAAATCCAAAA-CACAAAATATCTGAATGTCT-CGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTAC---AATT---CATTTA----TTCATTCATTCCAAAAT------TAAA-T---------AT---T------TGTATATATGAGACATcgtacttttatgattttaaattaatatgttttataacgattttgttgctgcgtattcgcttattagaataagacttcatttattccaaaattaaataccaatgaaatatgtatatatgggaaatgatcatcgcattc
gi|28 : acatcccggggaaatttcaaacgtcaatcagatactgcattctaaaatgtttgtgtgaaaattgaattctctgatgctaatccttatggtgataaatagtcatatgttattttgtattaccattttccttatactgatccacctcgtggcaggtttggtggaaaaaagcaagctatagatctacatagctcaagttatttttgagaaaatgcagtgacatattataccaacgtttttcattaaatcttgcttagatttgtgtttatgtactgcactaaagaggttatgtacactcaacaggtgtcattgtacaaagaatgacaactagtattacgcatactattataaaactctgacactatcttttgaacaaatgtaatagatattcacatgaactgcacaaacCCAAAAT------TAAA-T---------ATAAATGAAAAGTGTATATATGAGACATgagcatccaattat
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): TTATCTATAAGGGTTTGTTGTGGATTATTCTGTTACTAGAATTAGACTTATTCCAAAATGAACTATGTATACATAAGGATTGCATTGTACACATAAGGATC
Unaligned ( gi|20 ): AAACTAATCAATAAACAATCAATTTACCTTTAAGGAGCTCCTCCTATGTTTCTTAAATTCTCTCCTCTCTGCCTGCCTACCTGCCTGCCTGCCCCTC
Unaligned ( gi|21 ): AAACTAATCAATAAACAATCAATTTACCTTTAAGGAGCTCCTCCTATGTTTCTTAAATTCTCTCCTCTCTGCCTGCCTACCTGCCTGCCTGCCCCTC
Unaligned ( gi|22 ): AAACTAATCAATAAACAATCAATTTACCTTTAAGGAGCTCCTCCTATGTTTCTTAAATTCTCTCCTCTCTGCCTGCCTACCTGCCTGCCTGCCCCTC
Unaligned ( gi|23 ): TTTTTCAATATGTGTATAGGAATAATGGTGTTGGTGGGAAGGGAAGGCCCTTCAGCTGAGGGAATGGCTGTCCCCCACCC
Unaligned ( gi|26 ): AAACTAATCAATAAATAATCCATTTACCTTTAGGGAGCTCCTCCTGTGTTTCTTAAATTATTTCATCT
Unaligned ( gi|27 ): AACTAATCAATAAACAATCGATTTACCTTTAGGGAGCTCCTCCTATGTTTCTTAA
Alignments
lowQualScore : 11 11 11111111 333333333333333 11111 1111111 11111111111 111111 11111111 1111111 111111 22222222222222222 111111111 1111111111 1111111111 1111111 2222222222222222222 111111 111111111 22222222222222222222 222222222222222222222
lowQualScore : 3 88 88 3 1 1 0 88888888 111111111111111 5 4 55 4 3 00000 777 3333333 99999999999 4 4 44 555 999 555 44 1 99 3 3 333333 3 66666666 3 88 44 3 0000000 77 555555 33333333333333333 333333333 555 4444444444 5555555555 1111111 44 3 8888888888888888888 000000 555 3 1 555 44 222222222 555 1 555 555 3 777 88888888888888888888 999999 3 111111111111111111111
lowQualScore : . .. .. . . . . ........ ............... . . .. . . ..... ... ....... ........... . . .. ... ... ... .. . .. . . ...... . ........ . .. .. . ....... .. ...... ................. ......... ... .......... .......... ....... .. . ................... ...... ... . . ... .. ......... ... . ... ... . ... .................... ...... . .....................
lowQualScore : 0 55 55 2 0 0 7 11111111 222222222222222 0 4 11 4 6 00000 000 0000000 00000000000 0 9 99 888 222 888 22 0 00 3 3 444444 3 77777777 3 55 66 3 8888888 99 999999 33333333333333333 333333333 888 6666666666 9999999999 8888888 22 6 2222222222222222222 555555 222 1 4 444 22 333333333 444 5 999 444 6 000 99999999999999999999 666666 3 999999999999999999999
consensus : TCTCCCTCCNTAACCCTATTCACCCTAACCCTATATCTCATGTTCCACATTTCCTGAGCGTTTTTAATCTCTTTTCTTTACTTTTTGAATCTGTATTTGTATACACGCACACGTACGCACGCACATCCCGGGGAAA--------TTTCAAACGTCAATCAGATGCTGCATTCTA---------------A-AA-TGTT-CGTG-TGAAAATTGA-ATTC-----TCTGATG---CT-------AATC-----------CTTATGGTGAT-AAATNGTCTTATGTT-AT---T---TTG---TATTACC--ATTTTCCTTATACTGATCCANTCCGTGGCAGGTTTGGTGGAAAA-AAA-GCAAGCTATAGATCTACATAGCTCAG-----GT-TA--------TTTTTGAG-AAAATG--CA--GTG-ACAT-------ATTATACCAACGTTTT--CATT-A----AAACTTGCTTAG-----------------AT---------TTGTGTTTATG---TACTG----------CACTA----------AAGAGG-------TTATGTACACTC-AACAG-G-------------------TGTCATTGTACAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTC------TGAC-AATAT-CTTTTGAACAAATGTAATAGATATGCACACGAACTGCGCAAAT---TGAACAGA--A---------A---GCGTATCTTTATAGTATATATTTATGCAGACGTTAATATA-T-TTTTAT---ATTTGGTTTTAAATCCAAAACACAAAATATCTGAATGTCTCGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTAC---AATT---C----A----TTCATTCATTCCAAAAT------TAAA-T---------AT---T------TGTATATATGAGACAT
Reference ( family-1384 ) : TCTCCCTCCATAACCCTATTCACCCTAACCCTATATCTCATGTTCCACATTTCCTGAGCGTTTTTAATCTCTTTTCTTTACTTTTTGNATCTGTATTTGTATACACGCANACGCACGCACGCACATCCCGGGGAAA--------TTTCAAACGTCAATCAGATGCTGCATTCTA---------------A-AA-TGTT-CGTG-TGAAAATTGA-ATTC-----TCTGATG---CT-------AATC-----------CTTATGGTGAT-AAATNGTCTTATGTT-AT---T---TTG---TATTACC--ATTTTCCTTATACTGATCCANTCCGTGGCAGGTTTGGTGGAAAA-AAA-GCAAGCTATAGATCTACATAGCTCAG-----GT-TA--------TTTTTGAG-AAAATG--CA--GTG-ACAT-------ATTATACCAACGTTTT--CATT-A----AAACTTGCTTAG-----------------AT---------TTGTGTTTATG---TACTG----------CACTA----------AAGAGG-------TTATGTACACTC-AACAG-G-------------------TGTCATTGTACAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTC------TGAC-AATAT-CTTTTGAACAAATGTAATAGATATGCACACGAACTGCGCAAAT---TGAACAGA--A---------A---GCGTATCTTTATAGTATATATTTATGCAGACGTTAATATA-T-TTTTAT---ATTTGGTTTTAAATCCAAAACACAAAATATCTGAATGTCTCGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTAC---AATT---C----A----TTCATTCATTCCAAAAT------TAAA-T---------AT---T------TGTATATATGAGACAT
gi|1 : ACCGTAACTCAATATCTCATGTACCACATTTTCTGAACGTTTTTAATCTCTTTTCTTTACTTTTTGTATCTGTAT
gi|1 : CACACCCCGGGGAAA--------TTTCAAACGTCAATCAGATGCTGCATTCTA---------------A-AA-TGTT-CGTG-TGAAAATTGA-ATTC-----TCTGATG---CT-------TATC-----------GTTATGGTGGT-AAATTGTTTTATGTT-AT---T---TTA---TATTACC--ATTTTCCTTATACTAATTCAGTCCGTGGCAGGTGTGGT-GAAGA-AAA-GCAAGCTACAGATCTACATAGCTTAG-----TT-TA--------ATTTTGAG-AAAATGCACA--GTG-ATAT-------ATTATACCAACGTTTT--CATT-A----AAACTTGCTTTG-----------------AT---------TTGTGTTTATG---TACTG----------CACTA----------AAGAAG-------TTATTTACACAA-AACCG-G-------------------TGTCATTGTACAACGACTGCAAGCTTGTATTACGCACACAATTATAAAA----------G---------CTTTTGAACAAATGTAATAGATATGCACACGAACTGCGCAAAT---TAAACAGA--A---------A---GCTTATGTTTATAGGAAATAATTATGCAGACGTTAATATATT-TTTTAT---TTTTGGTTTTAAATTCAAAATACAAAATACCTGAATGTCTCGTACTTTTATGATTTTAAATTAATATGTTTTATAACGATTTTGTTGCTGCGTATTCGCTTATTAGAAT---------AAGACTTCATTTATTCCAAAAT------TAAA-TACCAATGAAAT---A------TGTATATATGGGAAATcaaggagtttgtgggaaggggaatgccctccagctggtgacggaacgggtgcaccccaccccacaccccggggaaatttcaaacgtcaatcagatgctgcattctaaaatgttcgtgtgaaaattgaattctctgatgcttatcgttatggtggtaaattgttttatgttattttatattaccattttccttatactaattcagtccgtggcaggtgtggtgaagaaaagcaagctacagatctacatagcttagtttaattttgagaaaatgcacagtgatatattataccaacgttttcattaaaacttgctttgatttgtgtttatgtactgcactaaagaagttatttacacaaaaccggtgtcattgtacaacgactgcaagcttgtattacgcacacaattataaaagcttttgaacaaatgtaatagatatgcacacgaactgcgcaaattaaacagaaagcttatgtttataggaaataattatgcagacgttaatatattttttatttttggttttaaattcaaaatacaaaatacctgaatgtctcgtacttttatgattttaaattaatatgttttataacgattttgttgctgcgtattcgcttattagaataagacttcatttattccaaaattaaataccaatgaaatatgtatatatgggaaatgatcatcgcattc
gi|10 : accgtaactcaatatctcatgtaccacattttctgaacgtttttaatctcttttctttactttttgtatctgtatcaaggagtttgtgggaaggggaatgccctccagctggtgacggaacgggtgcaccccacccAAATG--CA--GTG-ACAT-------ATTATACCAACGTTTT--CATT-A----AAACTTGCTTAG-----------------AT---------TTGTGTTTATG---TACTG----------CACTA----------AAGAGG-------TTATGTACACTC-AACAG-G-------------------TGTCATTGTACAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTC------TGAT-AATAT-ATTTTGAAAAAATGTAATAGATATGCACACGGACTGCACAAAT---TGAACAGA--A---------A---GCGTATCTTTATAGTATATATTTATGCAGACGTAAATATA-T-TTTTAT---ATTTGGTTTTAAATCCAAAACACAAAATATCTGAATGTCTCGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGATGAGTATTCTC-TAC---ATTT---C----A----TTCATTCATTCCAAAAT------TAAA-T---------AT---T------TGTATGTATGAGACATgatcatcgcattc
gi|11 : GTTTTGTCATT-A----AAACTTACTTAG-----------------AT---------TTGTGTTTATG---TACTG----------CACTA----------AA------------TATGTACACTC-AACAG-G-------------------TGTCATTGTACAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTC------TGAC-AATAT-CTTTTGAACAAATGTAATAGATATGCTCACGAACTGCGCAAAT---TGAACAGA--A---------A---GCGTATGTTTATAGTATGTATTGATGCAGACGTTAATATA-T-TTTTAT---ATTTGGTTTTAAATCCAAAACACAA--------AATGTCTCGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTAC---AATG---T----A----TTCATTCATTCCAAAA-------TAAA-catcccac
gi|12 : tgtatcaaggaA--------TTTCAAACGTCAA----ATGCTGCATTCTA---------------GCGG-TTTT-TAAGATTAAAATTTATATTCGTATGTTTG-TG---CT-------AGTTAATAGTTGTTGCGTACGGGGATGGAATTGTCGGATGTT-GT---TA--TTG---AATCATT--AT
gi|12 : gatggggaagcccccctccagctggtggggtaccaggatctccacttagaaaaaaataat-TGTTGCGTA-CGGGGATGGA-ATTG-----TCGGATG---TTGTTATTGAATC-----------ATTATGGCGAT-GAAT-GCATTATGGTGATGAATGCATCG---TGTCATC--CTTTCTCCCATATTGCTCAAATCAGTGGCAGGCGTGGTG-------AA-GACAGCTATAA---TATATAGCTCGGTGTGGGC-TAGGCCTAGTTCTTTGAG-AAAATA--Cggcgatgaatgcattatggtgatgaatgcatcgtgtcatcctttctcccatattgctcaaatcagtggcaggcgtggtgaagacagctataatatatagctcggtgtgggctaggcctagttctttgagaaaatac
gi|13 : gatggggaagcccccctccagctggtggggtaccaggatctccacttagaaaaaaataatatttcaaacgtcaaatgctgcattctagcggtttttaagattaaaatttatattcgtatgtttgtgctagttaatagtT-AT---T---TTG---TGTCACC--ATCTTCCTTATACTGCTCCATTCCGTGGCAGGTTTGGTGGAAAA-AAC-GCAAACTATAGATCAACATAGCTCAG-----TT-TA--------TTTTTGAG-AAAATG--CA--GTG-ACAT-------ATTATACCAACG-TTT--CATT------AAACTTGCTTAG-----------------AT---------TTGTGCTTATG---TATTG----------CACTA----------AAGAGG-------TTATGTACACTA-AACAG-G-------------------AGTCATTGCACAGAGAATGACAGCTAGTATTACGCATACTATTATAAAACT
gi|13 : AACTGCGCAAAT---TAAACAGA--A---------A---GCGTATCTTTATAGTATATATTTATGCGGACGTTAATATA-T-TTTTAT---ATCTgcgcaaattaaacagaaagcgtatctttatagtatatatttatgcggacgttaatatatttttatatct
gi|14 : tattttgtgtcaccatcttccttatactgctccattccgtggcaggtttggtggaaaaaacgcaaactatagatcaacatagctcagtttatttttgagaaaatgcagtgacatattataccaacgtttcattaaacttgcttagatttgtgcttatgtattgcactaaagaggttatgtacactaaacaggagtcattgcacagagaatgacagctagtattacgcatactattataaATACTATTATAAAACTC------TGAC-ACTAT-CTTTTGAACAAATGTAATAGATATTCACACGAACTGCGCAAAT---TGAACAGA--A---------A---GCGTTTCTTTATAGTATATGTTTATGCAGACGTTAATGTA-G-TTTTAT---ATTTGGTTTTAAATCCAAAACACAAAATATCTGAATGTCTCGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTAC---AATT---C----A----TTCATTCATTCCAAAAT------TAAAGT---------AT---T------TGTATATATGAGACAT
gi|15 : CACCCCGGGGGAAATTTGCTATTTCAAACGTCAATCAAATGCTTTATTCTAGCGATTTTAAGATTAA-AACTGTT-TGTG-TGGAAATGGA-CTTC-----TCTGATG---CT-------AATC-----------CTTATGGTGCT-AAATTGTCTCATGTT--T---T---TTGCATCATTACC--CTTTCCCTCATATTGCTTCAATCCGTAGCAGGTTCGGAG--AAG-AAA-TCAAGCTATATATCTATATTGCTC-G-----GTATAAT------TCTTTGA--AAAATA--CA--CTATACAT-------Agagcatcccatta
gi|16 : TCTCCCTCCCT--CCCT-----CCCT--CCCTATATCTCATGTTCCACATTTCCTGAGCGTTTTTAATCTCTTTTCTTTACTTTTTGTATCTGTATTTGTATgtttctcatcaaa
gi|17 : aaactaatcaataatcaatcgatttacctttagggagctcctcctatgtttctaaaattctctcctctctgcctacctgcctctctctctctcTCTCTCTCTATAACCCTATTCACCCTAACCCTATATCTCATGTTTTACATTTCCTGAGCGTTTTTAATCTCTTTTCTTTACTTTTTGAATCTGTTTTTGTATcaaggagtttgtgggaagggtaagcccgcccccccccccccc
gi|18 : aaactaatcaataaacaatcgatttacctttagggagctcctcttatgtttcttaaattctctctcTCTATAAGGGTTT-GTTGTGGATTATTCTGTTACTAGAATT---A----G-------ACTTATTCCAAAAT------GAAC-T---------A-----------TGTATACATAAGcaaggag
gi|19 : ttaAC-GATAT-AATGTGAACAAATTCAATAGATTTACACACAAACGGTGCTAATTTATAAAC-GA--A---------T---GCTTATGTTT-TAGgattgcattgtacacataaggatc
gi|2 : acacaagtacaaatatatcttatgcTCACCCTAACCCTATATCTCATGTTCCACATTTCCTGAGCGTTTTTGATATCTTTTCTTTACTTTTTGAATCTGTATTTGTATACACGCACACGTACGCACGCACATCCCGGGGAAA--------TTTCAAACGTCAATCAGTTGCTGCATTCTA---------------A-AA-TGTT-TGTG-TGAAAATTGA-ATTC-----TCTGATG---CT-------AATC-----------CTTATGGTGAT-AAATAGTCTTATGTT-AT---T---TTT---TGTTACC--ATTTTCCTTATACTGATTCACCTCGTGGCAGGTTTGGTGGGAAA-AAA-GCAAGCTATTGATCTACATAGCTCAA-----GT-TA--------TTTTTGAG-AACATG--CA--GTG-ACAT-------ATCATACCAACGTTTT--CATT-A----AATCTTGCTTAG-----------------AT---------TTGTGTTTATG---TACTG----------CACTA----------AAGAGG-------TTATGTACACTC-AACAG-G-------------------TGTCATTGTACAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTC------TGAC-ACTAT-CTTTTGAACAAATGTAATAGATATTCACACGAACTGCGCAAAT---TGAACACA--A---------A---GCGTTTCTTTATAGTATATATTTATGCAGACGTTAATGTA-G-TTTTAT---ATTTGGTTTTAAATCCAAAACACAAAATATCTGAATGTCTCGTACTTATATGATTTTAAA-TAAT---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTAT---AATT---C----A----TTCATTCATTCCAAAAT------TAAA-T---------AT---T------TGTATATATGAGACAT
gi|24 : tctctctcCAAACACACACACACACATACCCGGGACA--------TTT-----G--AATCAGATGCTGCATTTTA---------------A-AA-TGTT-CGTG-TGAAAATTGA-AT
gi|25 : ---------------A-AA-TGTT-TGTG-TGAAAATGGA-ATTC-----TCTAATGCTTCT-------AATC-----------CTTATGGTCAT-ACATTGTCTCATGTT--T---T---T
gi|28 : CCAAAAT------TAAA-T---------ATAAATGAAAAGTGTATATATGAGACAT
gi|29 : CATCCCAGGGAAA--------GTTCAAACGTTAATCAGATGCTgagcatagcattc
gi|3 : TCTTTTCTTTACTTTTTGAATCTGTATTTGTATACACGCACACGTATGCACGCACATCCCGGGGAAA--------TTTCAAACGTCAATCAGATGCTGCATTCTA---------------A-AA-TGTT-TGTG-TGAAAATTGA-ATTC-----TCTGATG---CT-------TATC-----------CTTATGGTGAT-AAATAGTCTGATGTT-AT---T---TTG---TATTACC--ATTTTCCTTATACTGATCCACCTCGTGGCAGGTTTGGTGGAAAA-AAA-GCAAGCTATTGATCTACATAGCTCAA-----GT-TA--------TTTTTGAG-AAAATG--CA--GTG-ACAT-------ATTATACCAACGTTTT--CATT-A----AATCTTGCTTAG-----------------AT---------TTGTGTTTATG---TACTG----------CACTatgttattttgtgt
gi|3 : -CTTTTGAACAAATGTAATAGATATTCACACGAACTGCACAAAT---TGAACAGA--A---------A---GCGTTTCTTTATAGTATATATTTATGCAGACGTTAATGTA-G-TTTTAT---ATTTGGTTTTAAATCCAAAACACAAAATATCTGAATGTTTCGTACTTATATGATTTTAAA-TAAT---TTTTATTACGATTTTGTTGCTGAGTATTCTCTTAC---AATT---C----A----TTCATTCATTCCAAAAT------TAAA-T---------AT---T------TGTATATATGAGACATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttttgaacaaatgtaatagatattcacacgaactgcacaaattgaacagaaagcgtttctttatagtatatatttatgcagacgttaatgtagttttatatttggttttaaatccaaaacacaaaatatctgaatgtttcgtacttatatgattttaaataatttttattacgattttgttgctgagtattctcttacaattcattcattcattccaaaattaaatatttgtatatatgagacatgagcatccca
gi|4 : tcttttctttactttttgaatctgtatttgtatacacgcacacgtatgcacgcacatcccggggaaatttcaaacgtcaatcagatgctgcattctaaaatgtttgtgtgaaaattgaattctctgatgcttatccttatggtgataaatagtctgatgttattttgtattaccattttccttatactgatccacctcgtggcaggtttggtggaaaaaaagcaagctattgatctacatagctcaagttatttttgagaaaatgcagtgacatattataccaacgttttcattaaatcttgcttagatttgtgtttatgtactgcactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACATCCCGGGGAAA--------TTTCAAACGTCAATCAGATACTGCATTCTA---------------A-AA-TGTT-TGTG-TGAAAATTGA-ATTC-----TCTGATG---CT-------AATC-----------CTTATGGTGAT-AAATAGTCATATGTT-AT---T---TTG---TATTACC--ATTTTCCTTATACTGATCCACCTCGTGGCAGGTTTGGTGGAAAA-AA--GCAAGCTATAGATCTACATAGCTCAA-----GT-TA--------TTTTTGAG-AAAATG--CA--GTG-ACAT-------ATTATACCAACGTTTTT-CATT-A----AATCTTGCTTAG-----------------AT---------TTGTGTTTATG---TACTG----------CACTA----------AAGAGG-------TTATGTACACTC-AACAG-G-------------------TGTCATTGTACAAAGAATGACAACTAGTATTACGCATACTATTATAAAACTC------TGAC-ACTAT-CTTTTGAACAAATGTAATAGATATTCACATGAACTGCACAAAgagcatccca
gi|4 : -TTTTAT---ATTTGGTTTTAAATCCAAAACACAAAATATCTGAATGTCTCGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTAC---AATT---CATTTA----TTCATTCATTCCAAAAT------TAAA-T---------AT---T------TGTATATATGAGACATcagttttatatttggttttaaatccaaaacacaaaatatctgaatgtctcgtacttatatgattttaaataacttttataacgattttgttgctgagtattctcttacaattcatttattcattcattccaaaattaaatatttgtatatatgagacatgagcatccaattat
gi|5 : acatcccggggaaatttcaaacgtcaatcagatactgcattctaaaatgtttgtgtgaaaattgaattctctgatgctaatccttatggtgataaatagtcatatgttattttgtattaccattttccttatactgatccacctcgtggcaggtttggtggaaaaaagcaagctatagatctacatagctcaagttatttttgagaaaatgcagtgacatattataccaacgtttttcattaaatcttgcttagatttgtgtttatgtactgcactaaagaggttatgtacactcaacaggtgtcattgtacaaagaatgacaactagtattacgcatactattataaaactctgacactatcttttgaacaaatgtaatagatattcacatgaactgcacaaacagTGA-ATTC-----TCTGATG---CT-------AATC-----------CTTATGGTGAT-AAATAGTCTTATATT-AT---T---TTG---TATAACC--ATTTTCCTTATACTGATCCACTCCGTGGCAGGTTTGGTGGAAAAAAAA-GCAAGCTATAGATCTACATAGCTCAA-----GT-TA--------TTTTTGAG-AAAATG--CA--GTA-ACAT-------ATTATACCAACGTTTT--CATT-A----AAACTTGTTTAG-----------------AT---------TTGTGTTTATG---TACTG----------CACTA----------AAGAGG-------TTATGCACACTC-AACAG-G-------------------TGTCATTGTACAAAGAATGACAGCTAGTATTATGCATAATATTATAAAACTC------TGAC-GATAT-CTTTTGAACAAATGTAATAGATATACACACGAACTGCGCAAAT---TGAATAGA--A---------A---GCGTATCTTTATAATATATATTTATGCAGACATTAATATA-T-TTTTAT---ATTTGGTTTTAAATCCAAAACACAAAATATCTAAATGTCTCGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTAC---A-----------A----TTCATTCATTCCAAAAT------AAAA-T---------AT---T------TGTATATATGAGACATgagcatccaattat
gi|6 : cTGA-ATTC-----TCTGATG---CT-------AATC-----------CTTATGGTGAT-AAATAGTCTTATATT-AT---T---TTG---TATAACC--ATTTTCCTTATACTGATCCACTCCGTGGCAGGTTTGGTGGAAAA-AAAAGCAAGCTATAGATCTACATAGCTCAA-----GT-TA--------TTTTTGAG-AAAATG--CA--GTA-ACAT-------ATTATACCAACGTTTT--CATT-A----AAACTTGTTTAG-----------------AT---------TTGTGTGTATG---TACTG----------CACTA----------AAGAG--------TTATGCACACTC-AACAG-G-------------------TGTCATTGTACAAAGAATGACAGCTAGTATTACGCATAATATTATAAAACTC------TGAC-GATAT-CTTTTGAACAAATGTAATAGATATGCACACGAACTGCGCAAAT---TGAATAGA--A---------A---GCGTATCTTTATAATATATATTTATGCAGACATTAATATA-T-TTTTAT---ATTTGGTTTTAAATCCAAAACACAAAATATCTAAATGTCTCGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTATCTTAC---A-----------A----TTCATTCATTCCAAAAT------AAAA-T---------AT---T------TGTATATATGAGACATgatcatcccatt
gi|7 : TTACTTTATTTTCCTTATACTGATCCAGTCCGTGGCAGGTTTGGTG--AAA-AAA-GCAAGCTATAAATAAACATAGCTCAG-----TT-TA--------ATTTTGAG-AAAATGCACA--GTG-ATAT-------ATTATACCAACGTTTT--TTTT-A----AAACTTGCTAAG-----------------AT---------TTGTGTTTAAA---AACTG----------CACAA----------AAGAGA-------TTGTGTACACTA-AACAG-G-------------------TGTCATTGTACAAAGAATGACAGCTTGTATTACGCATACTATTATAAATCTA------TGAC-AATAT-CTTTTGAATAAATATAATAAAAATACACACGAACTGCGCATAT---TAAACAGA--A---------AGTGGTGTATGTTTATAGTATATAGTAATGCAGACGTAAATATA-T-TTTCAT---ATTTGGGTTTAAATTCAAAACACAAAATATCTGAATGTCTCGTACTGATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTACTAGAATTAGAC---------TTCATTCATTCCAAAATTACATATAAA-TGAA------AT---G------TGTATATATGAGACATgatcatcccatt
gi|8 : ttt---TATTACT--GTTTTCCT------GAT---GTCCATGGCAGGTTTGGT--AATG-AAA-GCAAGCTGTAGAATTATATAGCACAGT----AT-AA--------TTCTTAAGAAAAATA--CA--CTG-ATATATTATTAATTATACCAACTTTTT--CATTCAGCCCAAACTTAATTAAATGAATGATTTGTGAATAT---------TTGTGTTTATGCAATGCTGTTATTGAATACACTA----------AAGAGG---------A-GCATGCTTAAACAA-GTATTTGGTGTTAAATATCATGTCATTGTATAATGAATGACAGCTAGCATTACGCATAATATTATAAAACTC------TGTT---TATGATTTTGAACAAATTTAA-AAAAATGCAT----ATTTTTTATAT---TTAGCTTA--T---------A-------ATATTTACTGTGTTTATTCATGCTAGCATTAA-ATA-C-ACTTA----ATTTGATTTT-------GAACACAA--------AATGTCTTACACTTTTATGATTTCAGA-gagcatcgcattc
gi|9 : T---T---TTG---TATTACC--ATCCCCCTT-TATTGCCCCAATCCAGGGCAGGTTTGATG--AAG-AAA-GCAAGCTCTACATCTATATGGCTCAG--------TA--------T-----------ATA--CACTGTG-ATAT-------ATTATACCAACTTTGT--AACTCAGCCCAAACTTACTTGG-----------------ATGGTATATGTTTGTGTTTATG---CAATG----------CATTATTAAGTAATAAAGAGGAGAACACTTAAATGTATTA-AATAACG-------------------TTTCATTGTGTAATGAATGACAAATAGAAGTACACATACTATTGTAAAACTCGGGCAATGATGAATGT-CTTTTAAACAAATTTAATGGGTATGCACACGTATATCGCAAAT---TTAAAAGATTATTCATATTTA---GCATAAGTTTACAGGTTATATTCATGCCGATGTTAA-ATA-CAATTTATTTGATTTGGTTTGAGATTCAAAACACTAAA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): AAACTAATCAATAAACAATCAATTTACCTTTAAGGAGCTCCTCCTATGTTTCTTAAATTCTCTCCTCTCTGCCTGCCTACCTGCCTGCCTGCCCCTC
Unaligned ( gi|21 ): AAACTAATCAATAAACAATCAATTTACCTTTAAGGAGCTCCTCCTATGTTTCTTAAATTCTCTCCTCTCTGCCTGCCTACCTGCCTGCCTGCCCCTC
Unaligned ( gi|22 ): AAACTAATCAATAAACAATCAATTTACCTTTAAGGAGCTCCTCCTATGTTTCTTAAATTCTCTCCTCTCTGCCTGCCTACCTGCCTGCCTGCCCCTC
Unaligned ( gi|23 ): TTTTTCAATATGTGTATAGGAATAATGGTGTTGGTGGGAAGGGAAGGCCCTTCAGCTGAGGGAATGGCTGTCCCCCACCC
Unaligned ( gi|26 ): AAACTAATCAATAAATAATCCATTTACCTTTAGGGAGCTCCTCCTGTGTTTCTTAAATTATTTCATCT
Unaligned ( gi|27 ): AACTAATCAATAAACAATCGATTTACCTTTAGGGAGCTCCTCCTATGTTTCTTAA
Alignments
lowQualScore : 11 11 11111111 333333333333333 11111 1111111 11111111111 11 111111 11111111 1111111 111111 22222222222222222 111111111 1111111111 1111111111 1111111 2222222222222222222 111111 111111111 22222222222222222222 222222222222222222222
lowQualScore : 1 88 88 3 1 88888888 111111111111111 5 4 55 4 3 00000 777 3333333 99999999999 4 4 44 555 999 555 44 1 33 3 3 333333 3 66666666 3 88 44 3 0000000 3 44 555555 33333333333333333 333333333 555 4444444444 5555555555 1111111 44 3 8888888888888888888 000000 555 3 1 555 44 222222222 555 1 555 555 3 777 88888888888888888888 999999 3 111111111111111111111
lowQualScore : . .. .. . . ........ ............... . . .. . . ..... ... ....... ........... . . .. ... ... ... .. . .. . . ...... . ........ . .. .. . ....... . .. ...... ................. ......... ... .......... .......... ....... .. . ................... ...... ... . . ... .. ......... ... . ... ... . ... .................... ...... . .....................
lowQualScore : 0 55 55 2 4 11111111 222222222222222 0 4 11 4 6 00000 000 0000000 00000000000 0 9 99 888 222 888 22 0 11 3 3 444444 3 77777777 3 55 66 3 8888888 3 66 999999 33333333333333333 333333333 888 6666666666 9999999999 8888888 22 6 2222222222222222222 555555 222 1 4 444 22 333333333 444 5 999 444 6 000 99999999999999999999 666666 3 999999999999999999999
consensus : TCTCCCTCCNTAACCCTATTCACCCTAACCCTATATCTCATGTTCCACATTTCCTGAGCGTTTTTAATCTCTTTTCTTTACTTTTTGAATCTGTATTTGTATACACGCACACGTACGCACGCACATCCCGGGGAAA--------TTTCAAACGTCAATCAGATGCTGCATTCTA---------------A-AA-TGTT-CGTG-TGAAAATTGA-ATTC-----TCTGATG---CT-------AATC-----------CTTATGGTGAT-AAATNGTCTTATGTT-AT---T---TTG---TATTACC--ATTTTCCTTATACTGATCCANTCCGTGGCAGGTTTGGTGGAAAA-AAA-GCAAGCTATAGATCTACATAGCTCAG-----GT-TA--------TTTTTGAG-AAAATG--CA--GTG-ACAT-------ATTATACCAACG-TTTT--CATT-A----AAACTTGCTTAG-----------------AT---------TTGTGTTTATG---TACTG----------CACTA----------AAGAGG-------TTATGTACACTC-AACAG-G-------------------TGTCATTGTACAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTC------TGAC-AATAT-CTTTTGAACAAATGTAATAGATATGCACACGAACTGCGCAAAT---TGAACAGA--A---------A---GCGTATCTTTATAGTATATATTTATGCAGACGTTAATATA-T-TTTTAT---ATTTGGTTTTAAATCCAAAACACAAAATATCTGAATGTCTCGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTAC---AATT---C----A----TTCATTCATTCCAAAAT------TAAA-T---------AT---T------TGTATATATGAGACAT
Reference ( family-1384 ) : TCTCCCTCCNTAACCCTATTCACCCTAACCCTATATCTCATGTTCCACATTTCCTGAGCGTTTTTAATCTCTTTTCTTTACTTTTTGAATCTGTATTTGTATACACGCACACGTACGCACGCACATCCCGGGGAAA--------TTTCAAACGTCAATCAGATGCTGCATTCTA---------------A-AA-TGTT-CGTG-TGAAAATTGA-ATTC-----TCTGATG---CT-------AATC-----------CTTATGGTGAT-AAATNGTCTTATGTT-AT---T---TTG---TATTACC--ATTTTCCTTATACTGATCCANTCCGTGGCAGGTTTGGTGGAAAA-AAA-GCAAGCTATAGATCTACATAGCTCAG-----GT-TA--------TTTTTGAG-AAAATG--CA--GTG-ACAT-------ATTATACCAACG-TTTT--CATT-A----AAACTTGCTTAG-----------------AT---------TTGTGTTTATG---TACTG----------CACTA----------AAGAGG-------TTATGTACACTC-AACAG-G-------------------TGTCATTGTACAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTC------TGAC-AATAT-CTTTTGAACAAATGTAATAGATATGCACACGAACTGCGCAAAT---TGAACAGA--A---------A---GCGTATCTTTATAGTATATATTTATGCAGACGTTAATATA-T-TTTTAT---ATTTGGTTTTAAATCCAAAACACAAAATATCTGAATGTCTCGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTAC---AATT---C----A----TTCATTCATTCCAAAAT------TAAA-T---------AT---T------TGTATATATGAGACAT
gi|1 : ACCGTAACTCAATATCTCATGTACCACATTTTCTGAACGTTTTTAATCTCTTTTCTTTACTTTTTGTATCTGTAT
gi|1 : CACACCCCGGGGAAA--------TTTCAAACGTCAATCAGATGCTGCATTCTA---------------A-AA-TGTT-CGTG-TGAAAATTGA-ATTC-----TCTGATG---CT-------TATC-----------GTTATGGTGGT-AAATTGTTTTATGTT-AT---T---TTA---TATTACC--ATTTTCCTTATACTAATTCAGTCCGTGGCAGGTGTGGT-GAAGA-AAA-GCAAGCTACAGATCTACATAGCTTAG-----TT-TA--------ATTTTGAG-AAAATGCACA--GTG-ATAT-------ATTATACCAACG-TTTT--CATT-A----AAACTTGCTTTG-----------------AT---------TTGTGTTTATG---TACTG----------CACTA----------AAGAAG-------TTATTTACACAA-AACCG-G-------------------TGTCATTGTACAACGACTGCAAGCTTGTATTACGCACACAATTATAAAA----------G---------CTTTTGAACAAATGTAATAGATATGCACACGAACTGCGCAAAT---TAAACAGA--A---------A---GCTTATGTTTATAGGAAATAATTATGCAGACGTTAATATATT-TTTTAT---TTTTGGTTTTAAATTCAAAATACAAAATACCTGAATGTCTCGTACTTTTATGATTTTAAATTAATATGTTTTATAACGATTTTGTTGCTGCGTATTCGCTTATTAGAAT---------AAGACTTCATTTATTCCAAAAT------TAAA-TACCAATGAAAT---A------TGTATATATGGGAAATcaaggagtttgtgggaaggggaatgccctccagctggtgacggaacgggtgcaccccaccccacaccccggggaaatttcaaacgtcaatcagatgctgcattctaaaatgttcgtgtgaaaattgaattctctgatgcttatcgttatggtggtaaattgttttatgttattttatattaccattttccttatactaattcagtccgtggcaggtgtggtgaagaaaagcaagctacagatctacatagcttagtttaattttgagaaaatgcacagtgatatattataccaacgttttcattaaaacttgctttgatttgtgtttatgtactgcactaaagaagttatttacacaaaaccggtgtcattgtacaacgactgcaagcttgtattacgcacacaattataaaagcttttgaacaaatgtaatagatatgcacacgaactgcgcaaattaaacagaaagcttatgtttataggaaataattatgcagacgttaatatattttttatttttggttttaaattcaaaatacaaaatacctgaatgtctcgtacttttatgattttaaattaatatgttttataacgattttgttgctgcgtattcgcttattagaataagacttcatttattccaaaattaaataccaatgaaatatgtatatatgggaaatgatcatcgcattc
gi|10 : accgtaactcaatatctcatgtaccacattttctgaacgtttttaatctcttttctttactttttgtatctgtatcaaggagtttgtgggaaggggaatgccctccagctggtgacggaacgggtgcaccccacccAAATG--CA--GTG-ACAT-------ATTATACCAACG-TTTT--CATT-A----AAACTTGCTTAG-----------------AT---------TTGTGTTTATG---TACTG----------CACTA----------AAGAGG-------TTATGTACACTC-AACAG-G-------------------TGTCATTGTACAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTC------TGAT-AATAT-ATTTTGAAAAAATGTAATAGATATGCACACGGACTGCACAAAT---TGAACAGA--A---------A---GCGTATCTTTATAGTATATATTTATGCAGACGTAAATATA-T-TTTTAT---ATTTGGTTTTAAATCCAAAACACAAAATATCTGAATGTCTCGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGATGAGTATTCTC-TAC---ATTT---C----A----TTCATTCATTCCAAAAT------TAAA-T---------AT---T------TGTATGTATGAGACATgatcatcgcattc
gi|11 : G-TTTTGTCATT-A----AAACTTACTTAG-----------------AT---------TTGTGTTTATG---TACTG----------CACTA----------AA------------TATGTACACTC-AACAG-G-------------------TGTCATTGTACAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTC------TGAC-AATAT-CTTTTGAACAAATGTAATAGATATGCTCACGAACTGCGCAAAT---TGAACAGA--A---------A---GCGTATGTTTATAGTATGTATTGATGCAGACGTTAATATA-T-TTTTAT---ATTTGGTTTTAAATCCAAAACACAA--------AATGTCTCGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTAC---AATG---T----A----TTCATTCATTCCAAAA-------TAAA-catcccac
gi|12 : tgtatcaaggaA--------TTTCAAACGTCAA----ATGCTGCATTCTA---------------GCGG-TTTT-TAAGATTAAAATTTATATTCGTATGTTTG-TG---CT-------AGTTAATAGTTGTTGCGTACGGGGATGGAATTGTCGGATGTT-GT---TA--TTG---AATCATT--AT
gi|12 : gatggggaagcccccctccagctggtggggtaccaggatctccacttagaaaaaaataat-TGTTGCGTA-CGGGGATGGA-ATTG-----TCGGATG---TTGTTATTGAATC-----------ATTATGGCGAT-GAAT-GCATTATGGTGATGAATGCATCG---TGTCATC--CTTTCTCCCATATTGCTCAAATCAGTGGCAGGCGTGGTG-------AA-GACAGCTATAA---TATATAGCTCGGTGTGGGC-TAGGCCTAGTTCTTTGAG-AAAATA--Cggcgatgaatgcattatggtgatgaatgcatcgtgtcatcctttctcccatattgctcaaatcagtggcaggcgtggtgaagacagctataatatatagctcggtgtgggctaggcctagttctttgagaaaatac
gi|13 : gatggggaagcccccctccagctggtggggtaccaggatctccacttagaaaaaaataatatttcaaacgtcaaatgctgcattctagcggtttttaagattaaaatttatattcgtatgtttgtgctagttaatagtT-AT---T---TTG---TGTCACC--ATCTTCCTTATACTGCTCCATTCCGTGGCAGGTTTGGTGGAAAA-AAC-GCAAACTATAGATCAACATAGCTCAG-----TT-TA--------TTTTTGAG-AAAATG--CA--GTG-ACAT-------ATTATACCAACG--TTT--CATT------AAACTTGCTTAG-----------------AT---------TTGTGCTTATG---TATTG----------CACTA----------AAGAGG-------TTATGTACACTA-AACAG-G-------------------AGTCATTGCACAGAGAATGACAGCTAGTATTACGCATACTATTATAAAACT
gi|13 : AACTGCGCAAAT---TAAACAGA--A---------A---GCGTATCTTTATAGTATATATTTATGCGGACGTTAATATA-T-TTTTAT---ATCTgcgcaaattaaacagaaagcgtatctttatagtatatatttatgcggacgttaatatatttttatatct
gi|14 : tattttgtgtcaccatcttccttatactgctccattccgtggcaggtttggtggaaaaaacgcaaactatagatcaacatagctcagtttatttttgagaaaatgcagtgacatattataccaacgtttcattaaacttgcttagatttgtgcttatgtattgcactaaagaggttatgtacactaaacaggagtcattgcacagagaatgacagctagtattacgcatactattataaATACTATTATAAAACTC------TGAC-ACTAT-CTTTTGAACAAATGTAATAGATATTCACACGAACTGCGCAAAT---TGAACAGA--A---------A---GCGTTTCTTTATAGTATATGTTTATGCAGACGTTAATGTA-G-TTTTAT---ATTTGGTTTTAAATCCAAAACACAAAATATCTGAATGTCTCGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTAC---AATT---C----A----TTCATTCATTCCAAAAT------TAAAGT---------AT---T------TGTATATATGAGACAT
gi|15 : CACCCCGGGGGAAATTTGCTATTTCAAACGTCAATCAAATGCTTTATTCTAGCGATTTTAAGATTAA-AACTGTT-TGTG-TGGAAATGGA-CTTC-----TCTGATG---CT-------AATC-----------CTTATGGTGCT-AAATTGTCTCATGTT--T---T---TTGCATCATTACC--CTTTCCCTCATATTGCTTCAATCCGTAGCAGGTTCGGAG--AAG-AAA-TCAAGCTATATATCTATATTGCTC-G-----GTATAAT------TCTTTGA--AAAATA--CA--CTATACAT-------Agagcatcccatta
gi|16 : TCTCCCTCCCT--CCCT-----CCCT--CCCTATATCTCATGTTCCACATTTCCTGAGCGTTTTTAATCTCTTTTCTTTACTTTTTGTATCTGTATTTGTATgtttctcatcaaa
gi|17 : aaactaatcaataatcaatcgatttacctttagggagctcctcctatgtttctaaaattctctcctctctgcctacctgcctctctctctctcTCTCTCTCTATAACCCTATTCACCCTAACCCTATATCTCATGTTTTACATTTCCTGAGCGTTTTTAATCTCTTTTCTTTACTTTTTGAATCTGTTTTTGTATcaaggagtttgtgggaagggtaagcccgcccccccccccccc
gi|18 : aaactaatcaataaacaatcgatttacctttagggagctcctcttatgtttcttaaattctctctcTCTATAAGGGTTT-GTTGTGGATTATTCTGTTACTAGAATT---A----G-------ACTTATTCCAAAAT------GAAC-T---------A-----------TGTATACATAAGcaaggag
gi|19 : ttaAC-GATAT-AATGTGAACAAATTCAATAGATTTACACACAAACGGTGCTAATTTATAAAC-GA--A---------T---GCTTATGTTT-TAGgattgcattgtacacataaggatc
gi|2 : acacaagtacaaatatatcttatgcTCACCCTAACCCTATATCTCATGTTCCACATTTCCTGAGCGTTTTTGATATCTTTTCTTTACTTTTTGAATCTGTATTTGTATACACGCACACGTACGCACGCACATCCCGGGGAAA--------TTTCAAACGTCAATCAGTTGCTGCATTCTA---------------A-AA-TGTT-TGTG-TGAAAATTGA-ATTC-----TCTGATG---CT-------AATC-----------CTTATGGTGAT-AAATAGTCTTATGTT-AT---T---TTT---TGTTACC--ATTTTCCTTATACTGATTCACCTCGTGGCAGGTTTGGTGGGAAA-AAA-GCAAGCTATTGATCTACATAGCTCAA-----GT-TA--------TTTTTGAG-AACATG--CA--GTG-ACAT-------ATCATACCAACG-TTTT--CATT-A----AATCTTGCTTAG-----------------AT---------TTGTGTTTATG---TACTG----------CACTA----------AAGAGG-------TTATGTACACTC-AACAG-G-------------------TGTCATTGTACAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTC------TGAC-ACTAT-CTTTTGAACAAATGTAATAGATATTCACACGAACTGCGCAAAT---TGAACACA--A---------A---GCGTTTCTTTATAGTATATATTTATGCAGACGTTAATGTA-G-TTTTAT---ATTTGGTTTTAAATCCAAAACACAAAATATCTGAATGTCTCGTACTTATATGATTTTAAA-TAAT---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTAT---AATT---C----A----TTCATTCATTCCAAAAT------TAAA-T---------AT---T------TGTATATATGAGACAT
gi|24 : tctctctcCAAACACACACACACACATACCCGGGACA--------TTT-----G--AATCAGATGCTGCATTTTA---------------A-AA-TGTT-CGTG-TGAAAATTGA-AT
gi|25 : ---------------A-AA-TGTT-TGTG-TGAAAATGGA-ATTC-----TCTAATGCTTCT-------AATC-----------CTTATGGTCAT-ACATTGTCTCATGTT--T---T---T
gi|28 : CCAAAAT------TAAA-T---------ATAAATGAAAAGTGTATATATGAGACAT
gi|29 : CATCCCAGGGAAA--------GTTCAAACGTTAATCAGATGCTgagcatagcattc
gi|3 : TCTTTTCTTTACTTTTTGAATCTGTATTTGTATACACGCACACGTATGCACGCACATCCCGGGGAAA--------TTTCAAACGTCAATCAGATGCTGCATTCTA---------------A-AA-TGTT-TGTG-TGAAAATTGA-ATTC-----TCTGATG---CT-------TATC-----------CTTATGGTGAT-AAATAGTCTGATGTT-AT---T---TTG---TATTACC--ATTTTCCTTATACTGATCCACCTCGTGGCAGGTTTGGTGGAAAA-AAA-GCAAGCTATTGATCTACATAGCTCAA-----GT-TA--------TTTTTGAG-AAAATG--CA--GTG-ACAT-------ATTATACCAACG-TTTT--CATT-A----AATCTTGCTTAG-----------------AT---------TTGTGTTTATG---TACTG----------CACTatgttattttgtgt
gi|3 : -CTTTTGAACAAATGTAATAGATATTCACACGAACTGCACAAAT---TGAACAGA--A---------A---GCGTTTCTTTATAGTATATATTTATGCAGACGTTAATGTA-G-TTTTAT---ATTTGGTTTTAAATCCAAAACACAAAATATCTGAATGTTTCGTACTTATATGATTTTAAA-TAAT---TTTTATTACGATTTTGTTGCTGAGTATTCTCTTAC---AATT---C----A----TTCATTCATTCCAAAAT------TAAA-T---------AT---T------TGTATATATGAGACATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttttgaacaaatgtaatagatattcacacgaactgcacaaattgaacagaaagcgtttctttatagtatatatttatgcagacgttaatgtagttttatatttggttttaaatccaaaacacaaaatatctgaatgtttcgtacttatatgattttaaataatttttattacgattttgttgctgagtattctcttacaattcattcattcattccaaaattaaatatttgtatatatgagacatgagcatccca
gi|4 : tcttttctttactttttgaatctgtatttgtatacacgcacacgtatgcacgcacatcccggggaaatttcaaacgtcaatcagatgctgcattctaaaatgtttgtgtgaaaattgaattctctgatgcttatccttatggtgataaatagtctgatgttattttgtattaccattttccttatactgatccacctcgtggcaggtttggtggaaaaaaagcaagctattgatctacatagctcaagttatttttgagaaaatgcagtgacatattataccaacgttttcattaaatcttgcttagatttgtgtttatgtactgcactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACATCCCGGGGAAA--------TTTCAAACGTCAATCAGATACTGCATTCTA---------------A-AA-TGTT-TGTG-TGAAAATTGA-ATTC-----TCTGATG---CT-------AATC-----------CTTATGGTGAT-AAATAGTCATATGTT-AT---T---TTG---TATTACC--ATTTTCCTTATACTGATCCACCTCGTGGCAGGTTTGGTGG-AAA-AAA-GCAAGCTATAGATCTACATAGCTCAA-----GT-TA--------TTTTTGAG-AAAATG--CA--GTG-ACAT-------ATTATACCAACGTTTTT--CATT-A----AATCTTGCTTAG-----------------AT---------TTGTGTTTATG---TACTG----------CACTA----------AAGAGG-------TTATGTACACTC-AACAG-G-------------------TGTCATTGTACAAAGAATGACAACTAGTATTACGCATACTATTATAAAACTC------TGAC-ACTAT-CTTTTGAACAAATGTAATAGATATTCACATGAACTGCACAAAgagcatccca
gi|4 : -TTTTAT---ATTTGGTTTTAAATCCAAAACACAAAATATCTGAATGTCTCGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTAC---AATT---CATTTA----TTCATTCATTCCAAAAT------TAAA-T---------AT---T------TGTATATATGAGACATcagttttatatttggttttaaatccaaaacacaaaatatctgaatgtctcgtacttatatgattttaaataacttttataacgattttgttgctgagtattctcttacaattcatttattcattcattccaaaattaaatatttgtatatatgagacatgagcatccaattat
gi|5 : acatcccggggaaatttcaaacgtcaatcagatactgcattctaaaatgtttgtgtgaaaattgaattctctgatgctaatccttatggtgataaatagtcatatgttattttgtattaccattttccttatactgatccacctcgtggcaggtttggtggaaaaaagcaagctatagatctacatagctcaagttatttttgagaaaatgcagtgacatattataccaacgtttttcattaaatcttgcttagatttgtgtttatgtactgcactaaagaggttatgtacactcaacaggtgtcattgtacaaagaatgacaactagtattacgcatactattataaaactctgacactatcttttgaacaaatgtaatagatattcacatgaactgcacaaacagTGA-ATTC-----TCTGATG---CT-------AATC-----------CTTATGGTGAT-AAATAGTCTTATATT-AT---T---TTG---TATAACC--ATTTTCCTTATACTGATCCACTCCGTGGCAGGTTTGGTGGAAAAAAAA-GCAAGCTATAGATCTACATAGCTCAA-----GT-TA--------TTTTTGAG-AAAATG--CA--GTA-ACAT-------ATTATACCAACG-TTTT--CATT-A----AAACTTGTTTAG-----------------AT---------TTGTGTTTATG---TACTG----------CACTA----------AAGAGG-------TTATGCACACTC-AACAG-G-------------------TGTCATTGTACAAAGAATGACAGCTAGTATTATGCATAATATTATAAAACTC------TGAC-GATAT-CTTTTGAACAAATGTAATAGATATACACACGAACTGCGCAAAT---TGAATAGA--A---------A---GCGTATCTTTATAATATATATTTATGCAGACATTAATATA-T-TTTTAT---ATTTGGTTTTAAATCCAAAACACAAAATATCTAAATGTCTCGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTAC---A-----------A----TTCATTCATTCCAAAAT------AAAA-T---------AT---T------TGTATATATGAGACATgagcatccaattat
gi|6 : cTGA-ATTC-----TCTGATG---CT-------AATC-----------CTTATGGTGAT-AAATAGTCTTATATT-AT---T---TTG---TATAACC--ATTTTCCTTATACTGATCCACTCCGTGGCAGGTTTGGTGGAAAA-AAAAGCAAGCTATAGATCTACATAGCTCAA-----GT-TA--------TTTTTGAG-AAAATG--CA--GTA-ACAT-------ATTATACCAACG-TTTT--CATT-A----AAACTTGTTTAG-----------------AT---------TTGTGTGTATG---TACTG----------CACTA----------AAGAG--------TTATGCACACTC-AACAG-G-------------------TGTCATTGTACAAAGAATGACAGCTAGTATTACGCATAATATTATAAAACTC------TGAC-GATAT-CTTTTGAACAAATGTAATAGATATGCACACGAACTGCGCAAAT---TGAATAGA--A---------A---GCGTATCTTTATAATATATATTTATGCAGACATTAATATA-T-TTTTAT---ATTTGGTTTTAAATCCAAAACACAAAATATCTAAATGTCTCGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTATCTTAC---A-----------A----TTCATTCATTCCAAAAT------AAAA-T---------AT---T------TGTATATATGAGACATgatcatcccatt
gi|7 : TTACTTTATTTTCCTTATACTGATCCAGTCCGTGGCAGGTTTGGTG--AAA-AAA-GCAAGCTATAAATAAACATAGCTCAG-----TT-TA--------ATTTTGAG-AAAATGCACA--GTG-ATAT-------ATTATACCAACG-TTTT--TTTT-A----AAACTTGCTAAG-----------------AT---------TTGTGTTTAAA---AACTG----------CACAA----------AAGAGA-------TTGTGTACACTA-AACAG-G-------------------TGTCATTGTACAAAGAATGACAGCTTGTATTACGCATACTATTATAAATCTA------TGAC-AATAT-CTTTTGAATAAATATAATAAAAATACACACGAACTGCGCATAT---TAAACAGA--A---------AGTGGTGTATGTTTATAGTATATAGTAATGCAGACGTAAATATA-T-TTTCAT---ATTTGGGTTTAAATTCAAAACACAAAATATCTGAATGTCTCGTACTGATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTACTAGAATTAGAC---------TTCATTCATTCCAAAATTACATATAAA-TGAA------AT---G------TGTATATATGAGACATgatcatcccatt
gi|8 : ttt---TATTACT--GTTTTCCT------GAT---GTCCATGGCAGGTTTGGT--AATG-AAA-GCAAGCTGTAGAATTATATAGCACAGT----AT-AA--------TTCTTAAGAAAAATA--CA--CTG-ATATATTATTAATTATACCAACT-TTTT--CATTCAGCCCAAACTTAATTAAATGAATGATTTGTGAATAT---------TTGTGTTTATGCAATGCTGTTATTGAATACACTA----------AAGAGG---------A-GCATGCTTAAACAA-GTATTTGGTGTTAAATATCATGTCATTGTATAATGAATGACAGCTAGCATTACGCATAATATTATAAAACTC------TGTT---TATGATTTTGAACAAATTTAA-AAAAATGCAT----ATTTTTTATAT---TTAGCTTA--T---------A-------ATATTTACTGTGTTTATTCATGCTAGCATTAA-ATA-C-ACTTA----ATTTGATTTT-------GAACACAA--------AATGTCTTACACTTTTATGATTTCAGA-gagcatcgcattc
gi|9 : T---T---TTG---TATTACC--ATCCCCCTT-TATTGCCCCAATCCAGGGCAGGTTTGATG--AAG-AAA-GCAAGCTCTACATCTATATGGCTCAG--------TA--------T-----------ATA--CACTGTG-ATAT-------ATTATACCAACT-TTGT--AACTCAGCCCAAACTTACTTGG-----------------ATGGTATATGTTTGTGTTTATG---CAATG----------CATTATTAAGTAATAAAGAGGAGAACACTTAAATGTATTA-AATAACG-------------------TTTCATTGTGTAATGAATGACAAATAGAAGTACACATACTATTGTAAAACTCGGGCAATGATGAATGT-CTTTTAAACAAATTTAATGGGTATGCACACGTATATCGCAAAT---TTAAAAGATTATTCATATTTA---GCATAAGTTTACAGGTTATATTCATGCCGATGTTAA-ATA-CAATTTATTTGATTTGGTTTGAGATTCAAAACACTAAA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): AAACTAATCAATAAACAATCAATTTACCTTTAAGGAGCTCCTCCTATGTTTCTTAAATTCTCTCCTCTCTGCCTGCCTACCTGCCTGCCTGCCCCTC
Unaligned ( gi|21 ): AAACTAATCAATAAACAATCAATTTACCTTTAAGGAGCTCCTCCTATGTTTCTTAAATTCTCTCCTCTCTGCCTGCCTACCTGCCTGCCTGCCCCTC
Unaligned ( gi|22 ): AAACTAATCAATAAACAATCAATTTACCTTTAAGGAGCTCCTCCTATGTTTCTTAAATTCTCTCCTCTCTGCCTGCCTACCTGCCTGCCTGCCCCTC
Unaligned ( gi|23 ): TTTTTCAATATGTGTATAGGAATAATGGTGTTGGTGGGAAGGGAAGGCCCTTCAGCTGAGGGAATGGCTGTCCCCCACCC
Unaligned ( gi|26 ): AAACTAATCAATAAATAATCCATTTACCTTTAGGGAGCTCCTCCTGTGTTTCTTAAATTATTTCATCT
Unaligned ( gi|27 ): AACTAATCAATAAACAATCGATTTACCTTTAGGGAGCTCCTCCTATGTTTCTTAA
Alignments
lowQualScore : 11 11 11111111 333333333333333 11111 1111111 11111111111 11 111111 11111111 1111111 111111 22222222222222222 111111111 1111111111 1111111111 1111111 2222222222222222222 111111 111111111 22222222222222222222 222222222222222222222
lowQualScore : 1 88 88 3 1 88888888 111111111111111 5 4 55 4 3 00000 777 3333333 99999999999 4 4 44 555 999 555 44 1 33 3 3 333333 3 66666666 3 88 44 3 0000000 3 44 555555 33333333333333333 333333333 555 4444444444 5555555555 1111111 44 3 8888888888888888888 000000 555 3 1 555 44 222222222 555 1 555 555 3 777 88888888888888888888 999999 3 111111111111111111111
lowQualScore : . .. .. . . ........ ............... . . .. . . ..... ... ....... ........... . . .. ... ... ... .. . .. . . ...... . ........ . .. .. . ....... . .. ...... ................. ......... ... .......... .......... ....... .. . ................... ...... ... . . ... .. ......... ... . ... ... . ... .................... ...... . .....................
lowQualScore : 0 55 55 2 4 11111111 222222222222222 0 4 11 4 6 00000 000 0000000 00000000000 0 9 99 888 222 888 22 0 11 3 3 444444 3 77777777 3 55 66 3 8888888 3 66 999999 33333333333333333 333333333 888 6666666666 9999999999 8888888 22 6 2222222222222222222 555555 222 1 4 444 22 333333333 444 5 999 444 6 000 99999999999999999999 666666 3 999999999999999999999
consensus : TCTCCCTCCNTAACCCTATTCACCCTAACCCTATATCTCATGTTCCACATTTCCTGAGCGTTTTTAATCTCTTTTCTTTACTTTTTGAATCTGTATTTGTATACACGCACACGTACGCACGCACATCCCGGGGAAA--------TTTCAAACGTCAATCAGATGCTGCATTCTA---------------A-AA-TGTT-CGTG-TGAAAATTGA-ATTC-----TCTGATG---CT-------AATC-----------CTTATGGTGAT-AAATNGTCTTATGTT-AT---T---TTG---TATTACC--ATTTTCCTTATACTGATCCANTCCGTGGCAGGTTTGGTGGAAAA-AAA-GCAAGCTATAGATCTACATAGCTCAG-----GT-TA--------TTTTTGAG-AAAATG--CA--GTG-ACAT-------ATTATACCAACG-TTTT--CATT-A----AAACTTGCTTAG-----------------AT---------TTGTGTTTATG---TACTG----------CACTA----------AAGAGG-------TTATGTACACTC-AACAG-G-------------------TGTCATTGTACAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTC------TGAC-AATAT-CTTTTGAACAAATGTAATAGATATGCACACGAACTGCGCAAAT---TGAACAGA--A---------A---GCGTATCTTTATAGTATATATTTATGCAGACGTTAATATA-T-TTTTAT---ATTTGGTTTTAAATCCAAAACACAAAATATCTGAATGTCTCGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTAC---AATT---C----A----TTCATTCATTCCAAAAT------TAAA-T---------AT---T------TGTATATATGAGACAT
Reference ( family-1384 ) : TCTCCCTCCNTAACCCTATTCACCCTAACCCTATATCTCATGTTCCACATTTCCTGAGCGTTTTTAATCTCTTTTCTTTACTTTTTGAATCTGTATTTGTATACACGCACACGTACGCACGCACATCCCGGGGAAA--------TTTCAAACGTCAATCAGATGCTGCATTCTA---------------A-AA-TGTT-CGTG-TGAAAATTGA-ATTC-----TCTGATG---CT-------AATC-----------CTTATGGTGAT-AAATNGTCTTATGTT-AT---T---TTG---TATTACC--ATTTTCCTTATACTGATCCANTCCGTGGCAGGTTTGGTGGAAAA-AAA-GCAAGCTATAGATCTACATAGCTCAG-----GT-TA--------TTTTTGAG-AAAATG--CA--GTG-ACAT-------ATTATACCAACG-TTTT--CATT-A----AAACTTGCTTAG-----------------AT---------TTGTGTTTATG---TACTG----------CACTA----------AAGAGG-------TTATGTACACTC-AACAG-G-------------------TGTCATTGTACAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTC------TGAC-AATAT-CTTTTGAACAAATGTAATAGATATGCACACGAACTGCGCAAAT---TGAACAGA--A---------A---GCGTATCTTTATAGTATATATTTATGCAGACGTTAATATA-T-TTTTAT---ATTTGGTTTTAAATCCAAAACACAAAATATCTGAATGTCTCGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTAC---AATT---C----A----TTCATTCATTCCAAAAT------TAAA-T---------AT---T------TGTATATATGAGACAT
gi|1 : ACCGTAACTCAATATCTCATGTACCACATTTTCTGAACGTTTTTAATCTCTTTTCTTTACTTTTTGTATCTGTAT
gi|1 : CACACCCCGGGGAAA--------TTTCAAACGTCAATCAGATGCTGCATTCTA---------------A-AA-TGTT-CGTG-TGAAAATTGA-ATTC-----TCTGATG---CT-------TATC-----------GTTATGGTGGT-AAATTGTTTTATGTT-AT---T---TTA---TATTACC--ATTTTCCTTATACTAATTCAGTCCGTGGCAGGTGTGGT-GAAGA-AAA-GCAAGCTACAGATCTACATAGCTTAG-----TT-TA--------ATTTTGAG-AAAATGCACA--GTG-ATAT-------ATTATACCAACG-TTTT--CATT-A----AAACTTGCTTTG-----------------AT---------TTGTGTTTATG---TACTG----------CACTA----------AAGAAG-------TTATTTACACAA-AACCG-G-------------------TGTCATTGTACAACGACTGCAAGCTTGTATTACGCACACAATTATAAAA----------G---------CTTTTGAACAAATGTAATAGATATGCACACGAACTGCGCAAAT---TAAACAGA--A---------A---GCTTATGTTTATAGGAAATAATTATGCAGACGTTAATATATT-TTTTAT---TTTTGGTTTTAAATTCAAAATACAAAATACCTGAATGTCTCGTACTTTTATGATTTTAAATTAATATGTTTTATAACGATTTTGTTGCTGCGTATTCGCTTATTAGAAT---------AAGACTTCATTTATTCCAAAAT------TAAA-TACCAATGAAAT---A------TGTATATATGGGAAATcaaggagtttgtgggaaggggaatgccctccagctggtgacggaacgggtgcaccccaccccacaccccggggaaatttcaaacgtcaatcagatgctgcattctaaaatgttcgtgtgaaaattgaattctctgatgcttatcgttatggtggtaaattgttttatgttattttatattaccattttccttatactaattcagtccgtggcaggtgtggtgaagaaaagcaagctacagatctacatagcttagtttaattttgagaaaatgcacagtgatatattataccaacgttttcattaaaacttgctttgatttgtgtttatgtactgcactaaagaagttatttacacaaaaccggtgtcattgtacaacgactgcaagcttgtattacgcacacaattataaaagcttttgaacaaatgtaatagatatgcacacgaactgcgcaaattaaacagaaagcttatgtttataggaaataattatgcagacgttaatatattttttatttttggttttaaattcaaaatacaaaatacctgaatgtctcgtacttttatgattttaaattaatatgttttataacgattttgttgctgcgtattcgcttattagaataagacttcatttattccaaaattaaataccaatgaaatatgtatatatgggaaatgatcatcgcattc
gi|10 : accgtaactcaatatctcatgtaccacattttctgaacgtttttaatctcttttctttactttttgtatctgtatcaaggagtttgtgggaaggggaatgccctccagctggtgacggaacgggtgcaccccacccAAATG--CA--GTG-ACAT-------ATTATACCAACG-TTTT--CATT-A----AAACTTGCTTAG-----------------AT---------TTGTGTTTATG---TACTG----------CACTA----------AAGAGG-------TTATGTACACTC-AACAG-G-------------------TGTCATTGTACAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTC------TGAT-AATAT-ATTTTGAAAAAATGTAATAGATATGCACACGGACTGCACAAAT---TGAACAGA--A---------A---GCGTATCTTTATAGTATATATTTATGCAGACGTAAATATA-T-TTTTAT---ATTTGGTTTTAAATCCAAAACACAAAATATCTGAATGTCTCGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGATGAGTATTCTC-TAC---ATTT---C----A----TTCATTCATTCCAAAAT------TAAA-T---------AT---T------TGTATGTATGAGACATgatcatcgcattc
gi|11 : G-TTTTGTCATT-A----AAACTTACTTAG-----------------AT---------TTGTGTTTATG---TACTG----------CACTA----------AA------------TATGTACACTC-AACAG-G-------------------TGTCATTGTACAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTC------TGAC-AATAT-CTTTTGAACAAATGTAATAGATATGCTCACGAACTGCGCAAAT---TGAACAGA--A---------A---GCGTATGTTTATAGTATGTATTGATGCAGACGTTAATATA-T-TTTTAT---ATTTGGTTTTAAATCCAAAACACAA--------AATGTCTCGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTAC---AATG---T----A----TTCATTCATTCCAAAA-------TAAA-catcccac
gi|12 : tgtatcaaggaA--------TTTCAAACGTCAA----ATGCTGCATTCTA---------------GCGG-TTTT-TAAGATTAAAATTTATATTCGTATGTTTG-TG---CT-------AGTTAATAGTTGTTGCGTACGGGGATGGAATTGTCGGATGTT-GT---TA--TTG---AATCATT--AT
gi|12 : gatggggaagcccccctccagctggtggggtaccaggatctccacttagaaaaaaataat-TGTTGCGTA-CGGGGATGGA-ATTG-----TCGGATG---TTGTTATTGAATC-----------ATTATGGCGAT-GAAT-GCATTATGGTGATGAATGCATCG---TGTCATC--CTTTCTCCCATATTGCTCAAATCAGTGGCAGGCGTGGTG-------AA-GACAGCTATAA---TATATAGCTCGGTGTGGGC-TAGGCCTAGTTCTTTGAG-AAAATA--Cggcgatgaatgcattatggtgatgaatgcatcgtgtcatcctttctcccatattgctcaaatcagtggcaggcgtggtgaagacagctataatatatagctcggtgtgggctaggcctagttctttgagaaaatac
gi|13 : gatggggaagcccccctccagctggtggggtaccaggatctccacttagaaaaaaataatatttcaaacgtcaaatgctgcattctagcggtttttaagattaaaatttatattcgtatgtttgtgctagttaatagtT-AT---T---TTG---TGTCACC--ATCTTCCTTATACTGCTCCATTCCGTGGCAGGTTTGGTGGAAAA-AAC-GCAAACTATAGATCAACATAGCTCAG-----TT-TA--------TTTTTGAG-AAAATG--CA--GTG-ACAT-------ATTATACCAACG--TTT--CATT------AAACTTGCTTAG-----------------AT---------TTGTGCTTATG---TATTG----------CACTA----------AAGAGG-------TTATGTACACTA-AACAG-G-------------------AGTCATTGCACAGAGAATGACAGCTAGTATTACGCATACTATTATAAAACT
gi|13 : AACTGCGCAAAT---TAAACAGA--A---------A---GCGTATCTTTATAGTATATATTTATGCGGACGTTAATATA-T-TTTTAT---ATCTgcgcaaattaaacagaaagcgtatctttatagtatatatttatgcggacgttaatatatttttatatct
gi|14 : tattttgtgtcaccatcttccttatactgctccattccgtggcaggtttggtggaaaaaacgcaaactatagatcaacatagctcagtttatttttgagaaaatgcagtgacatattataccaacgtttcattaaacttgcttagatttgtgcttatgtattgcactaaagaggttatgtacactaaacaggagtcattgcacagagaatgacagctagtattacgcatactattataaATACTATTATAAAACTC------TGAC-ACTAT-CTTTTGAACAAATGTAATAGATATTCACACGAACTGCGCAAAT---TGAACAGA--A---------A---GCGTTTCTTTATAGTATATGTTTATGCAGACGTTAATGTA-G-TTTTAT---ATTTGGTTTTAAATCCAAAACACAAAATATCTGAATGTCTCGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTAC---AATT---C----A----TTCATTCATTCCAAAAT------TAAAGT---------AT---T------TGTATATATGAGACAT
gi|15 : CACCCCGGGGGAAATTTGCTATTTCAAACGTCAATCAAATGCTTTATTCTAGCGATTTTAAGATTAA-AACTGTT-TGTG-TGGAAATGGA-CTTC-----TCTGATG---CT-------AATC-----------CTTATGGTGCT-AAATTGTCTCATGTT--T---T---TTGCATCATTACC--CTTTCCCTCATATTGCTTCAATCCGTAGCAGGTTCGGAG--AAG-AAA-TCAAGCTATATATCTATATTGCTC-G-----GTATAAT------TCTTTGA--AAAATA--CA--CTATACAT-------Agagcatcccatta
gi|16 : TCTCCCTCCCT--CCCT-----CCCT--CCCTATATCTCATGTTCCACATTTCCTGAGCGTTTTTAATCTCTTTTCTTTACTTTTTGTATCTGTATTTGTATgtttctcatcaaa
gi|17 : aaactaatcaataatcaatcgatttacctttagggagctcctcctatgtttctaaaattctctcctctctgcctacctgcctctctctctctcTCTCTCTCTATAACCCTATTCACCCTAACCCTATATCTCATGTTTTACATTTCCTGAGCGTTTTTAATCTCTTTTCTTTACTTTTTGAATCTGTTTTTGTATcaaggagtttgtgggaagggtaagcccgcccccccccccccc
gi|18 : aaactaatcaataaacaatcgatttacctttagggagctcctcttatgtttcttaaattctctctcTCTATAAGGGTTT-GTTGTGGATTATTCTGTTACTAGAATT---A----G-------ACTTATTCCAAAAT------GAAC-T---------A-----------TGTATACATAAGcaaggag
gi|19 : ttaAC-GATAT-AATGTGAACAAATTCAATAGATTTACACACAAACGGTGCTAATTTATAAAC-GA--A---------T---GCTTATGTTT-TAGgattgcattgtacacataaggatc
gi|2 : acacaagtacaaatatatcttatgcTCACCCTAACCCTATATCTCATGTTCCACATTTCCTGAGCGTTTTTGATATCTTTTCTTTACTTTTTGAATCTGTATTTGTATACACGCACACGTACGCACGCACATCCCGGGGAAA--------TTTCAAACGTCAATCAGTTGCTGCATTCTA---------------A-AA-TGTT-TGTG-TGAAAATTGA-ATTC-----TCTGATG---CT-------AATC-----------CTTATGGTGAT-AAATAGTCTTATGTT-AT---T---TTT---TGTTACC--ATTTTCCTTATACTGATTCACCTCGTGGCAGGTTTGGTGGGAAA-AAA-GCAAGCTATTGATCTACATAGCTCAA-----GT-TA--------TTTTTGAG-AACATG--CA--GTG-ACAT-------ATCATACCAACG-TTTT--CATT-A----AATCTTGCTTAG-----------------AT---------TTGTGTTTATG---TACTG----------CACTA----------AAGAGG-------TTATGTACACTC-AACAG-G-------------------TGTCATTGTACAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTC------TGAC-ACTAT-CTTTTGAACAAATGTAATAGATATTCACACGAACTGCGCAAAT---TGAACACA--A---------A---GCGTTTCTTTATAGTATATATTTATGCAGACGTTAATGTA-G-TTTTAT---ATTTGGTTTTAAATCCAAAACACAAAATATCTGAATGTCTCGTACTTATATGATTTTAAA-TAAT---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTAT---AATT---C----A----TTCATTCATTCCAAAAT------TAAA-T---------AT---T------TGTATATATGAGACAT
gi|24 : tctctctcCAAACACACACACACACATACCCGGGACA--------TTT-----G--AATCAGATGCTGCATTTTA---------------A-AA-TGTT-CGTG-TGAAAATTGA-AT
gi|25 : ---------------A-AA-TGTT-TGTG-TGAAAATGGA-ATTC-----TCTAATGCTTCT-------AATC-----------CTTATGGTCAT-ACATTGTCTCATGTT--T---T---T
gi|28 : CCAAAAT------TAAA-T---------ATAAATGAAAAGTGTATATATGAGACAT
gi|29 : CATCCCAGGGAAA--------GTTCAAACGTTAATCAGATGCTgagcatagcattc
gi|3 : TCTTTTCTTTACTTTTTGAATCTGTATTTGTATACACGCACACGTATGCACGCACATCCCGGGGAAA--------TTTCAAACGTCAATCAGATGCTGCATTCTA---------------A-AA-TGTT-TGTG-TGAAAATTGA-ATTC-----TCTGATG---CT-------TATC-----------CTTATGGTGAT-AAATAGTCTGATGTT-AT---T---TTG---TATTACC--ATTTTCCTTATACTGATCCACCTCGTGGCAGGTTTGGTGGAAAA-AAA-GCAAGCTATTGATCTACATAGCTCAA-----GT-TA--------TTTTTGAG-AAAATG--CA--GTG-ACAT-------ATTATACCAACG-TTTT--CATT-A----AATCTTGCTTAG-----------------AT---------TTGTGTTTATG---TACTG----------CACTatgttattttgtgt
gi|3 : -CTTTTGAACAAATGTAATAGATATTCACACGAACTGCACAAAT---TGAACAGA--A---------A---GCGTTTCTTTATAGTATATATTTATGCAGACGTTAATGTA-G-TTTTAT---ATTTGGTTTTAAATCCAAAACACAAAATATCTGAATGTTTCGTACTTATATGATTTTAAA-TAAT---TTTTATTACGATTTTGTTGCTGAGTATTCTCTTAC---AATT---C----A----TTCATTCATTCCAAAAT------TAAA-T---------AT---T------TGTATATATGAGACATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttttgaacaaatgtaatagatattcacacgaactgcacaaattgaacagaaagcgtttctttatagtatatatttatgcagacgttaatgtagttttatatttggttttaaatccaaaacacaaaatatctgaatgtttcgtacttatatgattttaaataatttttattacgattttgttgctgagtattctcttacaattcattcattcattccaaaattaaatatttgtatatatgagacatgagcatccca
gi|4 : tcttttctttactttttgaatctgtatttgtatacacgcacacgtatgcacgcacatcccggggaaatttcaaacgtcaatcagatgctgcattctaaaatgtttgtgtgaaaattgaattctctgatgcttatccttatggtgataaatagtctgatgttattttgtattaccattttccttatactgatccacctcgtggcaggtttggtggaaaaaaagcaagctattgatctacatagctcaagttatttttgagaaaatgcagtgacatattataccaacgttttcattaaatcttgcttagatttgtgtttatgtactgcactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACATCCCGGGGAAA--------TTTCAAACGTCAATCAGATACTGCATTCTA---------------A-AA-TGTT-TGTG-TGAAAATTGA-ATTC-----TCTGATG---CT-------AATC-----------CTTATGGTGAT-AAATAGTCATATGTT-AT---T---TTG---TATTACC--ATTTTCCTTATACTGATCCACCTCGTGGCAGGTTTGGTGG-AAA-AAA-GCAAGCTATAGATCTACATAGCTCAA-----GT-TA--------TTTTTGAG-AAAATG--CA--GTG-ACAT-------ATTATACCAACGTTTTT--CATT-A----AATCTTGCTTAG-----------------AT---------TTGTGTTTATG---TACTG----------CACTA----------AAGAGG-------TTATGTACACTC-AACAG-G-------------------TGTCATTGTACAAAGAATGACAACTAGTATTACGCATACTATTATAAAACTC------TGAC-ACTAT-CTTTTGAACAAATGTAATAGATATTCACATGAACTGCACAAAgagcatccca
gi|4 : -TTTTAT---ATTTGGTTTTAAATCCAAAACACAAAATATCTGAATGTCTCGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTAC---AATT---CATTTA----TTCATTCATTCCAAAAT------TAAA-T---------AT---T------TGTATATATGAGACATcagttttatatttggttttaaatccaaaacacaaaatatctgaatgtctcgtacttatatgattttaaataacttttataacgattttgttgctgagtattctcttacaattcatttattcattcattccaaaattaaatatttgtatatatgagacatgagcatccaattat
gi|5 : acatcccggggaaatttcaaacgtcaatcagatactgcattctaaaatgtttgtgtgaaaattgaattctctgatgctaatccttatggtgataaatagtcatatgttattttgtattaccattttccttatactgatccacctcgtggcaggtttggtggaaaaaagcaagctatagatctacatagctcaagttatttttgagaaaatgcagtgacatattataccaacgtttttcattaaatcttgcttagatttgtgtttatgtactgcactaaagaggttatgtacactcaacaggtgtcattgtacaaagaatgacaactagtattacgcatactattataaaactctgacactatcttttgaacaaatgtaatagatattcacatgaactgcacaaacagTGA-ATTC-----TCTGATG---CT-------AATC-----------CTTATGGTGAT-AAATAGTCTTATATT-AT---T---TTG---TATAACC--ATTTTCCTTATACTGATCCACTCCGTGGCAGGTTTGGTGGAAAAAAAA-GCAAGCTATAGATCTACATAGCTCAA-----GT-TA--------TTTTTGAG-AAAATG--CA--GTA-ACAT-------ATTATACCAACG-TTTT--CATT-A----AAACTTGTTTAG-----------------AT---------TTGTGTTTATG---TACTG----------CACTA----------AAGAGG-------TTATGCACACTC-AACAG-G-------------------TGTCATTGTACAAAGAATGACAGCTAGTATTATGCATAATATTATAAAACTC------TGAC-GATAT-CTTTTGAACAAATGTAATAGATATACACACGAACTGCGCAAAT---TGAATAGA--A---------A---GCGTATCTTTATAATATATATTTATGCAGACATTAATATA-T-TTTTAT---ATTTGGTTTTAAATCCAAAACACAAAATATCTAAATGTCTCGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTAC---A-----------A----TTCATTCATTCCAAAAT------AAAA-T---------AT---T------TGTATATATGAGACATgagcatccaattat
gi|6 : cTGA-ATTC-----TCTGATG---CT-------AATC-----------CTTATGGTGAT-AAATAGTCTTATATT-AT---T---TTG---TATAACC--ATTTTCCTTATACTGATCCACTCCGTGGCAGGTTTGGTGGAAAA-AAAAGCAAGCTATAGATCTACATAGCTCAA-----GT-TA--------TTTTTGAG-AAAATG--CA--GTA-ACAT-------ATTATACCAACG-TTTT--CATT-A----AAACTTGTTTAG-----------------AT---------TTGTGTGTATG---TACTG----------CACTA----------AAGAG--------TTATGCACACTC-AACAG-G-------------------TGTCATTGTACAAAGAATGACAGCTAGTATTACGCATAATATTATAAAACTC------TGAC-GATAT-CTTTTGAACAAATGTAATAGATATGCACACGAACTGCGCAAAT---TGAATAGA--A---------A---GCGTATCTTTATAATATATATTTATGCAGACATTAATATA-T-TTTTAT---ATTTGGTTTTAAATCCAAAACACAAAATATCTAAATGTCTCGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTATCTTAC---A-----------A----TTCATTCATTCCAAAAT------AAAA-T---------AT---T------TGTATATATGAGACATgatcatcccatt
gi|7 : TTACTTTATTTTCCTTATACTGATCCAGTCCGTGGCAGGTTTGGTG--AAA-AAA-GCAAGCTATAAATAAACATAGCTCAG-----TT-TA--------ATTTTGAG-AAAATGCACA--GTG-ATAT-------ATTATACCAACG-TTTT--TTTT-A----AAACTTGCTAAG-----------------AT---------TTGTGTTTAAA---AACTG----------CACAA----------AAGAGA-------TTGTGTACACTA-AACAG-G-------------------TGTCATTGTACAAAGAATGACAGCTTGTATTACGCATACTATTATAAATCTA------TGAC-AATAT-CTTTTGAATAAATATAATAAAAATACACACGAACTGCGCATAT---TAAACAGA--A---------AGTGGTGTATGTTTATAGTATATAGTAATGCAGACGTAAATATA-T-TTTCAT---ATTTGGGTTTAAATTCAAAACACAAAATATCTGAATGTCTCGTACTGATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTACTAGAATTAGAC---------TTCATTCATTCCAAAATTACATATAAA-TGAA------AT---G------TGTATATATGAGACATgatcatcccatt
gi|8 : ttt---TATTACT--GTTTTCCT------GAT---GTCCATGGCAGGTTTGGT--AATG-AAA-GCAAGCTGTAGAATTATATAGCACAGT----AT-AA--------TTCTTAAGAAAAATA--CA--CTG-ATATATTATTAATTATACCAACT-TTTT--CATTCAGCCCAAACTTAATTAAATGAATGATTTGTGAATAT---------TTGTGTTTATGCAATGCTGTTATTGAATACACTA----------AAGAGG---------A-GCATGCTTAAACAA-GTATTTGGTGTTAAATATCATGTCATTGTATAATGAATGACAGCTAGCATTACGCATAATATTATAAAACTC------TGTT---TATGATTTTGAACAAATTTAA-AAAAATGCAT----ATTTTTTATAT---TTAGCTTA--T---------A-------ATATTTACTGTGTTTATTCATGCTAGCATTAA-ATA-C-ACTTA----ATTTGATTTT-------GAACACAA--------AATGTCTTACACTTTTATGATTTCAGA-gagcatcgcattc
gi|9 : T---T---TTG---TATTACC--ATCCCCCTT-TATTGCCCCAATCCAGGGCAGGTTTGATG--AAG-AAA-GCAAGCTCTACATCTATATGGCTCAG--------TA--------T-----------ATA--CACTGTG-ATAT-------ATTATACCAACT-TTGT--AACTCAGCCCAAACTTACTTGG-----------------ATGGTATATGTTTGTGTTTATG---CAATG----------CATTATTAAGTAATAAAGAGGAGAACACTTAAATGTATTA-AATAACG-------------------TTTCATTGTGTAATGAATGACAAATAGAAGTACACATACTATTGTAAAACTCGGGCAATGATGAATGT-CTTTTAAACAAATTTAATGGGTATGCACACGTATATCGCAAAT---TTAAAAGATTATTCATATTTA---GCATAAGTTTACAGGTTATATTCATGCCGATGTTAA-ATA-CAATTTATTTGATTTGGTTTGAGATTCAAAACACTAAA
blockSeqs : A AA AT A T ATTTGCTA GCGATTTTAAGATTA C C GC A T GTATG CTT GTTATTG AATAGTTGTTG G T GA GAA GCA CAT TT A GA A A TGTGGG A GGCCTAGT A CA CT T ATTATTA T GT CAGCCC ATGAATGATTTGTGAAT GGTATATGT CAA TTATTGAATA TTAAGTAATA AGAACAC TA C TATTTGGTGTTAAATATCA GGGCAA GAA G G TTA TT TTCATATTT GTG C CA TTG . . TAGAATTAGAC TACATA G ATAAATGAAAAG
blockSeqs : A A . . . . T . . . . . . . T G . A . . T GG . . TA . AT . . . . . . . CAGCCC . . . . . . C . . . AA . G . . . . G T . . . AATTCATTTA . . GAAATG
blockSeqs : . A . . . . T . . . . . . . A A . . . . A GA . . T . . . . . . . . . A . . . . . . C . . . AA . T . . . . C T . . . TAGAATTAG . . ATT
blockSeqs : A . . . . T . . . . . . . T A . . . . C GA . . G . . . . . . . . . A . . . . . . A . . . AC . A . . . . C T . . . ATTTCA . . ATT
blockSeqs : . . . . C . . . . . . . A A . . . . C GA . . G . . . . . . . . . A . . . . . . C . . . GA . T . . . . G G . . . AATGTA . . ATT
blockSeqs : . . . . T . . . . . . . A A . . . . C G . . G . . . . . . . . . A . . . . . . C . . . AC . T . . . . C G . . . AATTCA . . ATT
blockSeqs : . . . . T . . . . . . . A A . . . . C A . . G . . . . . . . . . A . . . . . . C . . . AC . T . . . . C G . . . AATTCA . . ATT
blockSeqs : . T . . . . . . . A A . . . . C . . . G . . . . . . . . . A . . . . . . C . . . GA . A . . . . C T . . . AATTCA . . ATT
blockSeqs : . . . . . . . . . . . . G . . . G . . . . . . . . . A . . . . . . A . . . GA . G . . . . C T . . . AA . . ATT
blockSeqs : . . . . . . G . . . T . . . . . . . . . A . . . . . . A . . . AA . A . . . . G T . . AA . . A
blockSeqs : . . . . A . . . . . . . . . . . . . . . . . . . . G . . . . A C . . .
blockSeqs : . . . G . . . . G .
blockSeqCons : ** AA* T** *** AATTCA************** ATT******************
originalCons : TCTCCCTCCNTAACCCTATTCACCCTAACCCTATATCTCATGTTCCACATTTCCTGAGCGTTTTTAATCTCTTTTCTTTACTTTTTGAATCTGTATTTGTATACACGCACACGTACGCACGCACATCCCGGGGAAA--------TTTCAAACGTCAATCAGATGCTGCATTCTA---------------A-AA-TGTT-CGTG-TGAAAATTGA-ATTC-----TCTGATG---CT-------AATC-----------CTTATGGTGAT-AAATNGTCTTATGTT-AT---T---TTG---TATTACC--ATTTTCCTTATACTGATCCANTCCGTGGCAGGTTTGGTGGAAAA-AAA-GCAAGCTATAGATCTACATAGCTCAG-----GT-TA--------TTTTTGAG-AAAATG--CA--GTG-ACAT-------ATTATACCAACG-TTTT--CATT-A----AAACTTGCTTAG-----------------AT---------TTGTGTTTATG---TACTG----------CACTA----------AAGAGG-------TTATGTACACTC-AACAG-G-------------------TGTCATTGTACAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTC------TGAC-AATAT-CTTTTGAACAAATGTAATAGATATGCACACGAACTGCGCAAAT---TGAACAGA--A---------A---GCGTATCTTTATAGTATATATTTATGCAGACGTTAATATA-T-TTTTAT---ATTTGGTTTTAAATCCAAAACACAAAATATCTGAATGTCTCGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTAC---AATT---C----A----TTCATTCATTCCAAAAT------TAAA-T---------AT---T------TGTATATATGAGACAT
finalCons : TCTCCCTCCNTAACCCTATTCACCCTAACCCTATATCTCATGTTCCACATTTCCTGAGCGTTTTTAATCTCTTTTCTTTACTTTTTGAATCTGTATTTGTATACACGCACACGTACGCACGCACATCCCGGGGAAA--------TTTCAAACGTCAATCAGATGCTGCATTCTA---------------A-AA-TGTT-CGTG-TGAAAATTGA-ATTC-----TCTGATG---CT-------AATC-----------CTTATGGTGAT-AAATNGTCTTATGTT-AT---T---TTG---TATTACC--ATTTTCCTTATACTGATCCANTCCGTGGCAGGTTTGGTGGAAAA-AAA-GCAAGCTATAGATCTACATAGCTCAG-----GT-TA--------TTTTTGAG-AAAATG--CA--GTG-ACAT-------ATTATACCAACG-TTTT--CATT-A----AAACTTGCTTAG-----------------AT---------TTGTGTTTATG---TACTG----------CACTA----------AAGAGG-------TTATGTACACTC-AACAG-G-------------------TGTCATTGTACAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTC------TGACAA-TAT-CTTTTGAACAAATGTAATAGATATGCACACGAACTGCGCAAAT---TGAACAGA--A---------A---GCGTATCTTTATAGTATATATTTATGCAGACGTTAATATAT--TTTTAT---ATTTGGTTTTAAATCCAAAACACAAAATATCTGAATGTCTCGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTACAATTCA--------------TTCATTCATTCCAAAAT------TAAA-TATT------------------TGTATATATGAGACAT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): AAACTAATCAATAAACAATCAATTTACCTTTAAGGAGCTCCTCCTATGTTTCTTAAATTCTCTCCTCTCTGCCTGCCTACCTGCCTGCCTGCCCCTC
Unaligned ( gi|21 ): AAACTAATCAATAAACAATCAATTTACCTTTAAGGAGCTCCTCCTATGTTTCTTAAATTCTCTCCTCTCTGCCTGCCTACCTGCCTGCCTGCCCCTC
Unaligned ( gi|22 ): AAACTAATCAATAAACAATCAATTTACCTTTAAGGAGCTCCTCCTATGTTTCTTAAATTCTCTCCTCTCTGCCTGCCTACCTGCCTGCCTGCCCCTC
Unaligned ( gi|23 ): TTTTTCAATATGTGTATAGGAATAATGGTGTTGGTGGGAAGGGAAGGCCCTTCAGCTGAGGGAATGGCTGTCCCCCACCC
Unaligned ( gi|26 ): AAACTAATCAATAAATAATCCATTTACCTTTAGGGAGCTCCTCCTGTGTTTCTTAAATTATTTCATCT
Unaligned ( gi|27 ): AACTAATCAATAAACAATCGATTTACCTTTAGGGAGCTCCTCCTATGTTTCTTAA
Alignments
lowQualScore : 11 11 11111111 333333333333333 11111 1111111 11111111111 11 111111 11111111 1111111 111111 22222222222222222 111111111 1111111111 1111111111 1111111 2222222222222222222 111111 111111111 22222222222222222222 222222222222222222222
lowQualScore : 1 88 88 3 1 88888888 111111111111111 5 4 55 4 3 00000 777 3333333 99999999999 4 4 44 555 999 555 44 1 33 3 3 333333 3 66666666 3 88 44 3 0000000 3 44 555555 33333333333333333 333333333 555 4444444444 5555555555 1111111 44 3 8888888888888888888 000000 555 3 1 555 44 222222222 555 1 555 555 3 777 88888888888888888888 999999 3 111111111111111111111
lowQualScore : . .. .. . . ........ ............... . . .. . . ..... ... ....... ........... . . .. ... ... ... .. . .. . . ...... . ........ . .. .. . ....... . .. ...... ................. ......... ... .......... .......... ....... .. . ................... ...... ... . . ... .. ......... ... . ... ... . ... .................... ...... . .....................
lowQualScore : 0 55 55 2 4 11111111 222222222222222 0 4 11 4 6 00000 000 0000000 00000000000 0 9 99 888 222 888 22 0 11 3 3 444444 3 77777777 3 55 66 3 8888888 3 66 999999 33333333333333333 333333333 888 6666666666 9999999999 8888888 22 6 2222222222222222222 555555 222 1 4 444 22 333333333 444 5 999 444 6 000 99999999999999999999 666666 3 999999999999999999999
consensus : TCTCCCTCCNTAACCCTATTCACCCTAACCCTATATCTCATGTTCCACATTTCCTGAGCGTTTTTAATCTCTTTTCTTTACTTTTTGAATCTGTATTTGTATACACGCACACGTACGCACGCACATCCCGGGGAAA--------TTTCAAACGTCAATCAGATGCTGCATTCTA---------------A-AA-TGTT-CGTG-TGAAAATTGA-ATTC-----TCTGATG---CT-------AATC-----------CTTATGGTGAT-AAATNGTCTTATGTT-AT---T---TTG---TATTACC--ATTTTCCTTATACTGATCCANTCCGTGGCAGGTTTGGTGGAAAA-AAA-GCAAGCTATAGATCTACATAGCTCAG-----GT-TA--------TTTTTGAG-AAAATG--CA--GTG-ACAT-------ATTATACCAACG-TTTT--CATT-A----AAACTTGCTTAG-----------------AT---------TTGTGTTTATG---TACTG----------CACTA----------AAGAGG-------TTATGTACACTC-AACAG-G-------------------TGTCATTGTACAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTC------TGAC-AATAT-CTTTTGAACAAATGTAATAGATATGCACACGAACTGCGCAAAT---TGAACAGA--A---------A---GCGTATCTTTATAGTATATATTTATGCAGACGTTAATATA-T-TTTTAT---ATTTGGTTTTAAATCCAAAACACAAAATATCTGAATGTCTCGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTAC---AATT---C----A----TTCATTCATTCCAAAAT------TAAA-T---------AT---T------TGTATATATGAGACAT
Reference ( family-1384 ) : TCTCCCTCCNTAACCCTATTCACCCTAACCCTATATCTCATGTTCCACATTTCCTGAGCGTTTTTAATCTCTTTTCTTTACTTTTTGAATCTGTATTTGTATACACGCACACGTACGCACGCACATCCCGGGGAAA--------TTTCAAACGTCAATCAGATGCTGCATTCTA---------------A-AA-TGTT-CGTG-TGAAAATTGA-ATTC-----TCTGATG---CT-------AATC-----------CTTATGGTGAT-AAATNGTCTTATGTT-AT---T---TTG---TATTACC--ATTTTCCTTATACTGATCCANTCCGTGGCAGGTTTGGTGGAAAA-AAA-GCAAGCTATAGATCTACATAGCTCAG-----GT-TA--------TTTTTGAG-AAAATG--CA--GTG-ACAT-------ATTATACCAACG-TTTT--CATT-A----AAACTTGCTTAG-----------------AT---------TTGTGTTTATG---TACTG----------CACTA----------AAGAGG-------TTATGTACACTC-AACAG-G-------------------TGTCATTGTACAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTC------TGAC-AATAT-CTTTTGAACAAATGTAATAGATATGCACACGAACTGCGCAAAT---TGAACAGA--A---------A---GCGTATCTTTATAGTATATATTTATGCAGACGTTAATATA-T-TTTTAT---ATTTGGTTTTAAATCCAAAACACAAAATATCTGAATGTCTCGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTAC---AATT---C----A----TTCATTCATTCCAAAAT------TAAA-T---------AT---T------TGTATATATGAGACAT
gi|1 : ACCGTAACTCAATATCTCATGTACCACATTTTCTGAACGTTTTTAATCTCTTTTCTTTACTTTTTGTATCTGTAT
gi|1 : CACACCCCGGGGAAA--------TTTCAAACGTCAATCAGATGCTGCATTCTA---------------A-AA-TGTT-CGTG-TGAAAATTGA-ATTC-----TCTGATG---CT-------TATC-----------GTTATGGTGGT-AAATTGTTTTATGTT-AT---T---TTA---TATTACC--ATTTTCCTTATACTAATTCAGTCCGTGGCAGGTGTGGT-GAAGA-AAA-GCAAGCTACAGATCTACATAGCTTAG-----TT-TA--------ATTTTGAG-AAAATGCACA--GTG-ATAT-------ATTATACCAACG-TTTT--CATT-A----AAACTTGCTTTG-----------------AT---------TTGTGTTTATG---TACTG----------CACTA----------AAGAAG-------TTATTTACACAA-AACCG-G-------------------TGTCATTGTACAACGACTGCAAGCTTGTATTACGCACACAATTATAAAA----------G---------CTTTTGAACAAATGTAATAGATATGCACACGAACTGCGCAAAT---TAAACAGA--A---------A---GCTTATGTTTATAGGAAATAATTATGCAGACGTTAATATATT-TTTTAT---TTTTGGTTTTAAATTCAAAATACAAAATACCTGAATGTCTCGTACTTTTATGATTTTAAATTAATATGTTTTATAACGATTTTGTTGCTGCGTATTCGCTTATTAGAAT---------AAGACTTCATTTATTCCAAAAT------TAAA-TACCAATGAAAT---A------TGTATATATGGGAAATcaaggagtttgtgggaaggggaatgccctccagctggtgacggaacgggtgcaccccaccccacaccccggggaaatttcaaacgtcaatcagatgctgcattctaaaatgttcgtgtgaaaattgaattctctgatgcttatcgttatggtggtaaattgttttatgttattttatattaccattttccttatactaattcagtccgtggcaggtgtggtgaagaaaagcaagctacagatctacatagcttagtttaattttgagaaaatgcacagtgatatattataccaacgttttcattaaaacttgctttgatttgtgtttatgtactgcactaaagaagttatttacacaaaaccggtgtcattgtacaacgactgcaagcttgtattacgcacacaattataaaagcttttgaacaaatgtaatagatatgcacacgaactgcgcaaattaaacagaaagcttatgtttataggaaataattatgcagacgttaatatattttttatttttggttttaaattcaaaatacaaaatacctgaatgtctcgtacttttatgattttaaattaatatgttttataacgattttgttgctgcgtattcgcttattagaataagacttcatttattccaaaattaaataccaatgaaatatgtatatatgggaaatgatcatcgcattc
gi|10 : accgtaactcaatatctcatgtaccacattttctgaacgtttttaatctcttttctttactttttgtatctgtatcaaggagtttgtgggaaggggaatgccctccagctggtgacggaacgggtgcaccccacccAAATG--CA--GTG-ACAT-------ATTATACCAACG-TTTT--CATT-A----AAACTTGCTTAG-----------------AT---------TTGTGTTTATG---TACTG----------CACTA----------AAGAGG-------TTATGTACACTC-AACAG-G-------------------TGTCATTGTACAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTC------TGAT-AATAT-ATTTTGAAAAAATGTAATAGATATGCACACGGACTGCACAAAT---TGAACAGA--A---------A---GCGTATCTTTATAGTATATATTTATGCAGACGTAAATATA-T-TTTTAT---ATTTGGTTTTAAATCCAAAACACAAAATATCTGAATGTCTCGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGATGAGTATTCTC-TAC---ATTT---C----A----TTCATTCATTCCAAAAT------TAAA-T---------AT---T------TGTATGTATGAGACATgatcatcgcattc
gi|11 : G-TTTTGTCATT-A----AAACTTACTTAG-----------------AT---------TTGTGTTTATG---TACTG----------CACTA----------AA------------TATGTACACTC-AACAG-G-------------------TGTCATTGTACAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTC------TGAC-AATAT-CTTTTGAACAAATGTAATAGATATGCTCACGAACTGCGCAAAT---TGAACAGA--A---------A---GCGTATGTTTATAGTATGTATTGATGCAGACGTTAATATA-T-TTTTAT---ATTTGGTTTTAAATCCAAAACACAA--------AATGTCTCGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTAC---AATG---T----A----TTCATTCATTCCAAAA-------TAAA-catcccac
gi|12 : tgtatcaaggaA--------TTTCAAACGTCAA----ATGCTGCATTCTA---------------GCGG-TTTT-TAAGATTAAAATTTATATTCGTATGTTTG-TG---CT-------AGTTAATAGTTGTTGCGTACGGGGATGGAATTGTCGGATGTT-GT---TA--TTG---AATCATT--AT
gi|12 : gatggggaagcccccctccagctggtggggtaccaggatctccacttagaaaaaaataat-TGTTGCGTA-CGGGGATGGA-ATTG-----TCGGATG---TTGTTATTGAATC-----------ATTATGGCGAT-GAAT-GCATTATGGTGATGAATGCATCG---TGTCATC--CTTTCTCCCATATTGCTCAAATCAGTGGCAGGCGTGGTG-------AA-GACAGCTATAA---TATATAGCTCGGTGTGGGC-TAGGCCTAGTTCTTTGAG-AAAATA--Cggcgatgaatgcattatggtgatgaatgcatcgtgtcatcctttctcccatattgctcaaatcagtggcaggcgtggtgaagacagctataatatatagctcggtgtgggctaggcctagttctttgagaaaatac
gi|13 : gatggggaagcccccctccagctggtggggtaccaggatctccacttagaaaaaaataatatttcaaacgtcaaatgctgcattctagcggtttttaagattaaaatttatattcgtatgtttgtgctagttaatagtT-AT---T---TTG---TGTCACC--ATCTTCCTTATACTGCTCCATTCCGTGGCAGGTTTGGTGGAAAA-AAC-GCAAACTATAGATCAACATAGCTCAG-----TT-TA--------TTTTTGAG-AAAATG--CA--GTG-ACAT-------ATTATACCAACG--TTT--CATT------AAACTTGCTTAG-----------------AT---------TTGTGCTTATG---TATTG----------CACTA----------AAGAGG-------TTATGTACACTA-AACAG-G-------------------AGTCATTGCACAGAGAATGACAGCTAGTATTACGCATACTATTATAAAACT
gi|13 : AACTGCGCAAAT---TAAACAGA--A---------A---GCGTATCTTTATAGTATATATTTATGCGGACGTTAATATA-T-TTTTAT---ATCTgcgcaaattaaacagaaagcgtatctttatagtatatatttatgcggacgttaatatatttttatatct
gi|14 : tattttgtgtcaccatcttccttatactgctccattccgtggcaggtttggtggaaaaaacgcaaactatagatcaacatagctcagtttatttttgagaaaatgcagtgacatattataccaacgtttcattaaacttgcttagatttgtgcttatgtattgcactaaagaggttatgtacactaaacaggagtcattgcacagagaatgacagctagtattacgcatactattataaATACTATTATAAAACTC------TGAC-ACTAT-CTTTTGAACAAATGTAATAGATATTCACACGAACTGCGCAAAT---TGAACAGA--A---------A---GCGTTTCTTTATAGTATATGTTTATGCAGACGTTAATGTA-G-TTTTAT---ATTTGGTTTTAAATCCAAAACACAAAATATCTGAATGTCTCGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTAC---AATT---C----A----TTCATTCATTCCAAAAT------TAAAGT---------AT---T------TGTATATATGAGACAT
gi|15 : CACCCCGGGGGAAATTTGCTATTTCAAACGTCAATCAAATGCTTTATTCTAGCGATTTTAAGATTAA-AACTGTT-TGTG-TGGAAATGGA-CTTC-----TCTGATG---CT-------AATC-----------CTTATGGTGCT-AAATTGTCTCATGTT--T---T---TTGCATCATTACC--CTTTCCCTCATATTGCTTCAATCCGTAGCAGGTTCGGAG--AAG-AAA-TCAAGCTATATATCTATATTGCTC-G-----GTATAAT------TCTTTGA--AAAATA--CA--CTATACAT-------Agagcatcccatta
gi|16 : TCTCCCTCCCT--CCCT-----CCCT--CCCTATATCTCATGTTCCACATTTCCTGAGCGTTTTTAATCTCTTTTCTTTACTTTTTGTATCTGTATTTGTATgtttctcatcaaa
gi|17 : aaactaatcaataatcaatcgatttacctttagggagctcctcctatgtttctaaaattctctcctctctgcctacctgcctctctctctctcTCTCTCTCTATAACCCTATTCACCCTAACCCTATATCTCATGTTTTACATTTCCTGAGCGTTTTTAATCTCTTTTCTTTACTTTTTGAATCTGTTTTTGTATcaaggagtttgtgggaagggtaagcccgcccccccccccccc
gi|18 : aaactaatcaataaacaatcgatttacctttagggagctcctcttatgtttcttaaattctctctcTCTATAAGGGTTT-GTTGTGGATTATTCTGTTACTAGAATT---A----G-------ACTTATTCCAAAAT------GAAC-T---------A-----------TGTATACATAAGcaaggag
gi|19 : ttaAC-GATAT-AATGTGAACAAATTCAATAGATTTACACACAAACGGTGCTAATTTATAAAC-GA--A---------T---GCTTATGTTT-TAGgattgcattgtacacataaggatc
gi|2 : acacaagtacaaatatatcttatgcTCACCCTAACCCTATATCTCATGTTCCACATTTCCTGAGCGTTTTTGATATCTTTTCTTTACTTTTTGAATCTGTATTTGTATACACGCACACGTACGCACGCACATCCCGGGGAAA--------TTTCAAACGTCAATCAGTTGCTGCATTCTA---------------A-AA-TGTT-TGTG-TGAAAATTGA-ATTC-----TCTGATG---CT-------AATC-----------CTTATGGTGAT-AAATAGTCTTATGTT-AT---T---TTT---TGTTACC--ATTTTCCTTATACTGATTCACCTCGTGGCAGGTTTGGTGGGAAA-AAA-GCAAGCTATTGATCTACATAGCTCAA-----GT-TA--------TTTTTGAG-AACATG--CA--GTG-ACAT-------ATCATACCAACG-TTTT--CATT-A----AATCTTGCTTAG-----------------AT---------TTGTGTTTATG---TACTG----------CACTA----------AAGAGG-------TTATGTACACTC-AACAG-G-------------------TGTCATTGTACAAAGAATGACAGCTAGTATTACGCATACTATTATAAAACTC------TGAC-ACTAT-CTTTTGAACAAATGTAATAGATATTCACACGAACTGCGCAAAT---TGAACACA--A---------A---GCGTTTCTTTATAGTATATATTTATGCAGACGTTAATGTA-G-TTTTAT---ATTTGGTTTTAAATCCAAAACACAAAATATCTGAATGTCTCGTACTTATATGATTTTAAA-TAAT---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTAT---AATT---C----A----TTCATTCATTCCAAAAT------TAAA-T---------AT---T------TGTATATATGAGACAT
gi|24 : tctctctcCAAACACACACACACACATACCCGGGACA--------TTT-----G--AATCAGATGCTGCATTTTA---------------A-AA-TGTT-CGTG-TGAAAATTGA-AT
gi|25 : ---------------A-AA-TGTT-TGTG-TGAAAATGGA-ATTC-----TCTAATGCTTCT-------AATC-----------CTTATGGTCAT-ACATTGTCTCATGTT--T---T---T
gi|28 : CCAAAAT------TAAA-T---------ATAAATGAAAAGTGTATATATGAGACAT
gi|29 : CATCCCAGGGAAA--------GTTCAAACGTTAATCAGATGCTgagcatagcattc
gi|3 : TCTTTTCTTTACTTTTTGAATCTGTATTTGTATACACGCACACGTATGCACGCACATCCCGGGGAAA--------TTTCAAACGTCAATCAGATGCTGCATTCTA---------------A-AA-TGTT-TGTG-TGAAAATTGA-ATTC-----TCTGATG---CT-------TATC-----------CTTATGGTGAT-AAATAGTCTGATGTT-AT---T---TTG---TATTACC--ATTTTCCTTATACTGATCCACCTCGTGGCAGGTTTGGTGGAAAA-AAA-GCAAGCTATTGATCTACATAGCTCAA-----GT-TA--------TTTTTGAG-AAAATG--CA--GTG-ACAT-------ATTATACCAACG-TTTT--CATT-A----AATCTTGCTTAG-----------------AT---------TTGTGTTTATG---TACTG----------CACTatgttattttgtgt
gi|3 : -CTTTTGAACAAATGTAATAGATATTCACACGAACTGCACAAAT---TGAACAGA--A---------A---GCGTTTCTTTATAGTATATATTTATGCAGACGTTAATGTA-G-TTTTAT---ATTTGGTTTTAAATCCAAAACACAAAATATCTGAATGTTTCGTACTTATATGATTTTAAA-TAAT---TTTTATTACGATTTTGTTGCTGAGTATTCTCTTAC---AATT---C----A----TTCATTCATTCCAAAAT------TAAA-T---------AT---T------TGTATATATGAGACATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncttttgaacaaatgtaatagatattcacacgaactgcacaaattgaacagaaagcgtttctttatagtatatatttatgcagacgttaatgtagttttatatttggttttaaatccaaaacacaaaatatctgaatgtttcgtacttatatgattttaaataatttttattacgattttgttgctgagtattctcttacaattcattcattcattccaaaattaaatatttgtatatatgagacatgagcatccca
gi|4 : tcttttctttactttttgaatctgtatttgtatacacgcacacgtatgcacgcacatcccggggaaatttcaaacgtcaatcagatgctgcattctaaaatgtttgtgtgaaaattgaattctctgatgcttatccttatggtgataaatagtctgatgttattttgtattaccattttccttatactgatccacctcgtggcaggtttggtggaaaaaaagcaagctattgatctacatagctcaagttatttttgagaaaatgcagtgacatattataccaacgttttcattaaatcttgcttagatttgtgtttatgtactgcactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACATCCCGGGGAAA--------TTTCAAACGTCAATCAGATACTGCATTCTA---------------A-AA-TGTT-TGTG-TGAAAATTGA-ATTC-----TCTGATG---CT-------AATC-----------CTTATGGTGAT-AAATAGTCATATGTT-AT---T---TTG---TATTACC--ATTTTCCTTATACTGATCCACCTCGTGGCAGGTTTGGTGG-AAA-AAA-GCAAGCTATAGATCTACATAGCTCAA-----GT-TA--------TTTTTGAG-AAAATG--CA--GTG-ACAT-------ATTATACCAACGTTTTT--CATT-A----AATCTTGCTTAG-----------------AT---------TTGTGTTTATG---TACTG----------CACTA----------AAGAGG-------TTATGTACACTC-AACAG-G-------------------TGTCATTGTACAAAGAATGACAACTAGTATTACGCATACTATTATAAAACTC------TGAC-ACTAT-CTTTTGAACAAATGTAATAGATATTCACATGAACTGCACAAAgagcatccca
gi|4 : -TTTTAT---ATTTGGTTTTAAATCCAAAACACAAAATATCTGAATGTCTCGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTAC---AATT---CATTTA----TTCATTCATTCCAAAAT------TAAA-T---------AT---T------TGTATATATGAGACATcagttttatatttggttttaaatccaaaacacaaaatatctgaatgtctcgtacttatatgattttaaataacttttataacgattttgttgctgagtattctcttacaattcatttattcattcattccaaaattaaatatttgtatatatgagacatgagcatccaattat
gi|5 : acatcccggggaaatttcaaacgtcaatcagatactgcattctaaaatgtttgtgtgaaaattgaattctctgatgctaatccttatggtgataaatagtcatatgttattttgtattaccattttccttatactgatccacctcgtggcaggtttggtggaaaaaagcaagctatagatctacatagctcaagttatttttgagaaaatgcagtgacatattataccaacgtttttcattaaatcttgcttagatttgtgtttatgtactgcactaaagaggttatgtacactcaacaggtgtcattgtacaaagaatgacaactagtattacgcatactattataaaactctgacactatcttttgaacaaatgtaatagatattcacatgaactgcacaaacagTGA-ATTC-----TCTGATG---CT-------AATC-----------CTTATGGTGAT-AAATAGTCTTATATT-AT---T---TTG---TATAACC--ATTTTCCTTATACTGATCCACTCCGTGGCAGGTTTGGTGGAAAAAAAA-GCAAGCTATAGATCTACATAGCTCAA-----GT-TA--------TTTTTGAG-AAAATG--CA--GTA-ACAT-------ATTATACCAACG-TTTT--CATT-A----AAACTTGTTTAG-----------------AT---------TTGTGTTTATG---TACTG----------CACTA----------AAGAGG-------TTATGCACACTC-AACAG-G-------------------TGTCATTGTACAAAGAATGACAGCTAGTATTATGCATAATATTATAAAACTC------TGAC-GATAT-CTTTTGAACAAATGTAATAGATATACACACGAACTGCGCAAAT---TGAATAGA--A---------A---GCGTATCTTTATAATATATATTTATGCAGACATTAATATA-T-TTTTAT---ATTTGGTTTTAAATCCAAAACACAAAATATCTAAATGTCTCGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTAC---A-----------A----TTCATTCATTCCAAAAT------AAAA-T---------AT---T------TGTATATATGAGACATgagcatccaattat
gi|6 : cTGA-ATTC-----TCTGATG---CT-------AATC-----------CTTATGGTGAT-AAATAGTCTTATATT-AT---T---TTG---TATAACC--ATTTTCCTTATACTGATCCACTCCGTGGCAGGTTTGGTGGAAAA-AAAAGCAAGCTATAGATCTACATAGCTCAA-----GT-TA--------TTTTTGAG-AAAATG--CA--GTA-ACAT-------ATTATACCAACG-TTTT--CATT-A----AAACTTGTTTAG-----------------AT---------TTGTGTGTATG---TACTG----------CACTA----------AAGAG--------TTATGCACACTC-AACAG-G-------------------TGTCATTGTACAAAGAATGACAGCTAGTATTACGCATAATATTATAAAACTC------TGAC-GATAT-CTTTTGAACAAATGTAATAGATATGCACACGAACTGCGCAAAT---TGAATAGA--A---------A---GCGTATCTTTATAATATATATTTATGCAGACATTAATATA-T-TTTTAT---ATTTGGTTTTAAATCCAAAACACAAAATATCTAAATGTCTCGTACTTATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTATCTTAC---A-----------A----TTCATTCATTCCAAAAT------AAAA-T---------AT---T------TGTATATATGAGACATgatcatcccatt
gi|7 : TTACTTTATTTTCCTTATACTGATCCAGTCCGTGGCAGGTTTGGTG--AAA-AAA-GCAAGCTATAAATAAACATAGCTCAG-----TT-TA--------ATTTTGAG-AAAATGCACA--GTG-ATAT-------ATTATACCAACG-TTTT--TTTT-A----AAACTTGCTAAG-----------------AT---------TTGTGTTTAAA---AACTG----------CACAA----------AAGAGA-------TTGTGTACACTA-AACAG-G-------------------TGTCATTGTACAAAGAATGACAGCTTGTATTACGCATACTATTATAAATCTA------TGAC-AATAT-CTTTTGAATAAATATAATAAAAATACACACGAACTGCGCATAT---TAAACAGA--A---------AGTGGTGTATGTTTATAGTATATAGTAATGCAGACGTAAATATA-T-TTTCAT---ATTTGGGTTTAAATTCAAAACACAAAATATCTGAATGTCTCGTACTGATATGATTTTAAA-TAAC---TTTTATAACGATTTTGTTGCTGAGTATTCTCTTACTAGAATTAGAC---------TTCATTCATTCCAAAATTACATATAAA-TGAA------AT---G------TGTATATATGAGACATgatcatcccatt
gi|8 : ttt---TATTACT--GTTTTCCT------GAT---GTCCATGGCAGGTTTGGT--AATG-AAA-GCAAGCTGTAGAATTATATAGCACAGT----AT-AA--------TTCTTAAGAAAAATA--CA--CTG-ATATATTATTAATTATACCAACT-TTTT--CATTCAGCCCAAACTTAATTAAATGAATGATTTGTGAATAT---------TTGTGTTTATGCAATGCTGTTATTGAATACACTA----------AAGAGG---------A-GCATGCTTAAACAA-GTATTTGGTGTTAAATATCATGTCATTGTATAATGAATGACAGCTAGCATTACGCATAATATTATAAAACTC------TGTT---TATGATTTTGAACAAATTTAA-AAAAATGCAT----ATTTTTTATAT---TTAGCTTA--T---------A-------ATATTTACTGTGTTTATTCATGCTAGCATTAA-ATA-C-ACTTA----ATTTGATTTT-------GAACACAA--------AATGTCTTACACTTTTATGATTTCAGA-gagcatcgcattc
gi|9 : T---T---TTG---TATTACC--ATCCCCCTT-TATTGCCCCAATCCAGGGCAGGTTTGATG--AAG-AAA-GCAAGCTCTACATCTATATGGCTCAG--------TA--------T-----------ATA--CACTGTG-ATAT-------ATTATACCAACT-TTGT--AACTCAGCCCAAACTTACTTGG-----------------ATGGTATATGTTTGTGTTTATG---CAATG----------CATTATTAAGTAATAAAGAGGAGAACACTTAAATGTATTA-AATAACG-------------------TTTCATTGTGTAATGAATGACAAATAGAAGTACACATACTATTGTAAAACTCGGGCAATGATGAATGT-CTTTTAAACAAATTTAATGGGTATGCACACGTATATCGCAAAT---TTAAAAGATTATTCATATTTA---GCATAAGTTTACAGGTTATATTCATGCCGATGTTAA-ATA-CAATTTATTTGATTTGGTTTGAGATTCAAAACACTAAA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): AAACTAATCAATAAACAATCAATTTACCTTTAAGGAGCTCCTCCTATGTTTCTTAAATTCTCTCCTCTCTGCCTGCCTACCTGCCTGCCTGCCCCTC
Unaligned ( gi|21 ): AAACTAATCAATAAACAATCAATTTACCTTTAAGGAGCTCCTCCTATGTTTCTTAAATTCTCTCCTCTCTGCCTGCCTACCTGCCTGCCTGCCCCTC
Unaligned ( gi|22 ): AAACTAATCAATAAACAATCAATTTACCTTTAAGGAGCTCCTCCTATGTTTCTTAAATTCTCTCCTCTCTGCCTGCCTACCTGCCTGCCTGCCCCTC
Unaligned ( gi|23 ): TTTTTCAATATGTGTATAGGAATAATGGTGTTGGTGGGAAGGGAAGGCCCTTCAGCTGAGGGAATGGCTGTCCCCCACCC
Unaligned ( gi|26 ): AAACTAATCAATAAATAATCCATTTACCTTTAGGGAGCTCCTCCTGTGTTTCTTAAATTATTTCATCT
Unaligned ( gi|27 ): AACTAATCAATAAACAATCGATTTACCTTTAGGGAGCTCCTCCTATGTTTCTTAA