lowQualScore : 111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111 33333333333333333333333 1111111111111111111111111111111 111111111111
lowQualScore : 333333333333333333333333333333333333 1 44444444444444444444444444 3333333 11111 2222 55555555555555555555555 222 11 8888888888888888888888888888888888888888888888888888888888888888888 333333 222 11 3333 11 2222 1111 111 44444444444444444444444 11 3333333333333 1 1111 111111111 222 111 1 1 1 11111 111111 22222 11 11 22222222 1 2 777777777777777777777777777777 11 222 33333 111 44444444 111 88888888888888888888 111 111 1 1111 22222 1 77777777777777777777777777 11 11 55555 11 222 1 77777777777777777777777 1 5555555555555555555555555555555 1 4 44 11 111111111111
lowQualScore : 444444444444444444444444444444444444 7 8 0 33333333333333333333333333 4 9999 9 0 5 2222222 44444 5 5 1 4444 0 77777777777777777777777 6 3 66 333 44 0 8888888888888888888888888888888888888888888888888888888888888888888 6 6 5 666666 9 333 9 33 3333 99 8 6666 0 4444 000 55 33333333333333333333333 33 77 1111111111111 8 3 5 2222 111111111 6 444 444 5 4 7 99 4 1 5 2 66666 99 6 2 3 999999 33333 2 99 3 11 88 66666666 0 0 3 4 7 4 999999999999999999999999999999 1 55 333 33333 444 6 9999 66666666 4 3 444 66666666666666666666 6 9 777 6 444 9 5 66 0 3333 77777 33 2 9 0 99999999999999999999999999 2 2 3 9 2 4 2 00 6 88 9 2 00000 3 33 6 777 6 5 00000000000000000000000 6 5 2222222222222222222222222222222 6 5 6 0 6 66 22 6 333333333333 6
lowQualScore : .................................... . . . .......................... . .... . . . ....... ..... . . . .... . ....................... . . .. ... .. . ................................................................... . . . ...... . ... . .. .... .. . .... . .... ... .. ....................... .. .. ............. . . . .... ......... . ... ... . . . .. . . . . ..... .. . . . ...... ..... . .. . .. .. ........ . . . . . . .............................. . .. ... ..... ... . .... ........ . . ... .................... . . ... . ... . . .. . .... ..... .. . . . .......................... . . . . . . . .. . .. . . ..... . .. . ... . . ....................... . . ............................... . . . . . .. .. . ............ .
lowQualScore : 666666666666666666666666666666666666 0 9 7 33333333333333333333333333 4 4444 4 8 0 1111111 33333 7 7 9 3333 7 77777777777777777777777 7 0 77 333 33 7 2222222222222222222222222222222222222222222222222222222222222222222 0 6 4 000000 2 222 8 88 5555 55 8 0000 8 2222 000 22 55555555555555555555555 00 44 4444444444444 6 0 0 4444 999999999 6 666 000 7 0 1 66 0 4 7 0 77777 22 7 5 5 222222 88888 5 33 7 77 33 00000000 7 7 3 0 3 7 777777777777777777777777777777 0 77 777 77777 777 7 3333 33333333 7 7 000 55555555555555555555 7 7 777 7 000 0 0 88 8 6666 88888 22 2 0 0 22222222222222222222222222 2 2 2 8 5 2 5 22 0 33 0 5 00000 0 55 0 000 0 0 00000000000000000000000 0 0 0000000000000000000000000000000 0 0 0 0 0 00 00 0 000000000000 0
consensus : GGGTTTTTCATTT---------GTGGGTTAAGGA-----------CCACTACAATAATATTTT-AAGGGTCC-NAA----------------------C-TATTAGGC----ATCATGCTGATCTGATAA-G-C---T-TTTTATTTT-----T-TATT-GCAACCTTTTATTCAT----GAAGACAGCTGTCAGCTGT---------AAAATCACAA-CCCAGNAGGGTTCT---TGCTTGCATATTTGGAAATGAGGATGGANAAATGACATTACNCANNGTNCTTGCAACATACANAGCTATTAAATATGTGTTTTAAGCACAAAAATGTGACCCTCTTGTAGAAGACGACCTTAAAAATCATCAATATT--AAAAAGN-NCCCAAAAC-CTTTTCATGACATTCCTCATTTATTTACATTTC----CTTATA---TTAAAACT----------------TT-----TCCGTCATGCCTG-NCTAATTTGC-------------AAAGNTTCTAAATCGCGAATAC---CGA--TGAC---ATTACGTAAAA--CAGTAGACTGCTCATTTGCAGTA-CNAATTCA-CTGATGCTTATGATG-CA-AACGAT-----TGG--TC-ATTGTAANAATA------ATTTANNA-TATAGACT-AAAAAANTACGAAAA--AGAC--AAGTA-AATTACGTTAAAACATATTTTAT-TCGATAAATTTCAATAACTCTCGGGTTC-C-CAAC-CTTGTCACGTGACCAATAAC-GGTGT-TGA-GTAAACAAACGNTAGTGCATATGATCCGNTACGTGCGGTCC--ACGTNGGNAAAACGCTTTGGTGGAAAATTNNACCTAGAA-TAA----AACATCGCGATTTTGATGGAATTGTTGCAATAAAAGCGAATGTATATCTCNNAAATATTTTCTTTGGTTTCTTTTCCTTTTGAAATTAGGAATTTTGTTACTTTGGATNGGAAAAGGAAAGGAATGAACGACATTGCTTTTTTGCGGAAACGTGTCCC-GGACGTAA---TGNAATTTAAAAT-ACGAGTCCTCGGTCGAAAATGTGCGTCAG-GACGC--AAGAAAAANCCAGGACTGNGCTNNGTTCGGTTAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACTACCATTTTGAGATGTTCCCATGAGCACAGGCGCTTTATAATGCTTTATACCTCATAAGCGTCTCCATGATGTTTGATGAAGGAGCGGAAAGGCATCGAATGAAAGCAAAGAGAAAAAATT-TAACAAATT-TTTTTTCCACAA--------AAAAAGGTTATGGTTGGGGCTAAAAAAAATAGGGTTGGTCAGAATACTGGAAACAAACATATATATTTTTTAGGCCT
Reference ( gi|1 ) : GGGTTTTTCATTT---------G---------GA-----------CCG-TACAATAATAGTTT-AGGGGTCC-AAA----------------------C-TATTAGGC----ATCATGCTGATCTGATAA-G-C---T-TTTTATTTT-----T-TATT-GCAACCTTTTATTCAT----GAAGA-------CAGCTGT---------AAAATCACAA-CCCAGAAGGGCCCT---TGCTTGCACTTTTGGGAATGAGCTTGGAG------------CCAGGATCCTT-CAATATACATAGC-----AAT-----------GTATAAAAATGTGACCCTCATTTAGAAGACAACCTTAAAAATCTTAAATATT--AAAAATT-TCCCAAAAC-ATTTTCATGAAATGCCTCATTTATTTACATTTC----CTTATA---TTAAAACT----------------TT-----TCCGTCATGCCTG-TCTAATTTGC-------------AAAGTTTCTAAATCGCGACTAT---TGA--TTAT---ATTACGTACAT--CAGTAGACTGTTCATTTGCAATA-CAAAT-CA-TTGATGCTTATGATG-CA-AACGAT-----TGG--TC-ATTGTAAGAATA------ATTTAAGA-TATAGACC-AAAAAAGTACAAAAA--AGAC--GAGCATAATTGCATTAAAACACATTTTAT-TTAATAAATATCAATGACTTTCGGATTCTCCCAATACTTGTCATGTGATCAATTAC-GTTGT-TATGGTAAACAAATGGTAGTGCATATGATTTGCTACATGCGATCT-TACATAGGGAAAATGTTTTGGTAGAAAA--AAAC----AAATAA----AACATCACGATTTTGATGGAATTGTTACAATAAAAGTGAATATTTATCTCCCAAACATTTTGTTTGGTTTCTTTTTCTTTTGAAATTAGGAATTTTGTTACTTTGGATGGGAAAAGGAAAGGAATTACCGACATTGCTTTTTTGCGGAAATGTGTACC-GGATGCAT---TGGAATTTAAAATAATAAGTCCTTGGTTGAAAATGTGCGTCAGAGATGC--AGGAAAAACCCA-----GTGTTTAGTTTGGTTAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGCAGCTCTGACTACCATTTTGAGATGCTCCCATGAGCACAAAGGCTTTATAATGCTTTATACCTTATAATCGTCTCCATGATGTT-----------------------GGATGACAGCAAAGAGAAAAAATTATA--GGATTCTTTTTTTCACAATATCGGTCAAAAAGATTAGGGTCGGGGCT-AAAAAGATAGGGTC-GTTGGGATACTGGAAAGA-----ATTTTTTTTTTAGACCTTACCCTAATGTCACTTGTGATAATTTATTAA
gi|3 : GGCTTTTTTATTT---------GTGGGTTAAGGA-----------CCCCTATAATAATATTTT-AAGGGTCC-CAA----------------------CCTATTAGGC----ATCATGCTGATCTGATAA-GGC---T-TTTTATTTT-----T-TATT-GCAACCTTTTATTCGT----GAAGA-------CAGGTG--------------TCACAA-CCCAGA
gi|12 : tctaGGATTTTTCATTTTTGGGTTAAA---------GA-----------CCC-TACAATAATACTTT-AAGGGTCCCAAA----------------------C-TATCAGGC----ATCATGCTGATCTGATAA-GGC---T-TTTTATTTT-----T-TATT-GCAACCTTTTATTCAT----GAAGACAGCTGTCAGCTGT---------AAAATCACAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaatgaccttcttttagaagaatttaaaaatcatcaatattaaaaaaaatcccaaaaccttttcatggcattcctcatttatttacatttccttatattaaagctcaatatcaacaagaattttccgtcatgcctggcttatttgcaaagcttataaatcgcgaatactgattacattacgtacaatagtagactgttcatttgcaaaacaaatcactgatgcttatgatacatcacgattttgatggaattgttgcaataaaagtgaatatatatctcattaaaattttctttgctttcttttccttttgaaactagaaattgtgttactttggataggaaaggaatgaacgacattgcgtttttgcggaaacgtgtcccggatttaatgagatttaaactacgaatcctcagtcgaaaaagtgcgtcagga
gi|8 : tccctaGGATTTTTCATTT---------G---------GGGGTCCAAGGACCCA-TACAATAATGTTTT-AAGGGTTC-AAATACCAATTTTGGTGGTCACCGAC-TATTAGAC----ATCATGCTGATCTcc
gi|6 : tatatgttattatgtacagggttttccctaGGTTTTTCATTT---------GTGGGTTAAGGA-----------CCACTACAATAATATTTTTAAGGGTCCCAAA----------------------C-TATTAGGC----ATCATGCTGATCTGATGA-G-----------GCTTT-----T-TATT-GCAACCTTTTATTCATAATGAAAGACAGCTGTCAGCTGT---------AAAATCACAA-CCCAtcatgaacacaaacccagcagggttcttgcttgcatatttgggaatgaggatggaaaaatgacattacccacggtccttcaacatacataacaatatgtgttttaagtataaaaataagattctcatgtagaaggccttctcaatcataattttaaaaagtactcaaaactgtgtcatgacatttgtaattcatttatcttaaagctcaaacccccaaaacttttacatcatgcct
gi|14 : GGTTTTTCATTT---------GTGGGTTAAGGA-----------CCACTACAATAATATTTTTAAGGGTCCCAAA----------------------C-TATTAGGC----ATCATGCTGATCTGATGA-G-----------GCTTT-----T-TATT-GCAACCTTTTATTCATAATGAAAGACAGCTGTCAGCTGT---------AAAATCACAA-CCCtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaaggtgaccttcttttagaagacgttaaaaatcatcaatattgaaaaaaagtcccaaaacctttgaatgactcctcatttatttacattccattataataaagctcaatatccataaga
gi|18 : GGATTTTCATTT---------GTAGGTTGAGGA-----------CCACTACAATAATA-TTT-AAGGGTCC-CAA----------------------C-TTTTAGGC----ATCATGCTGATATGATAA-G-
gi|2 : ta---------GG-----------CCA-AACACCAAT--TTT-TGGGGTTC-CGA----------------------C-TATTAGAC----ATCATGCTGATCTG--CA-G-CACAT-TTTTATATT-----T-TGT---CATTCTTTTATTCAT----TAACA-------CAgc
gi|11 : gttccctagaatattcaatttgggagtccaaggaccactacaataatattttaagtCAACATCAATTT-TGGGGTCC-TGA----------------------C-AAGTAGACTAATATCATGCTAATATG-TCT-G-C---CATTTTATTTTATTGTTATATT-GCTCCCTTCAATT-AT----GAAGA-------CAGCTGCCAGCTGTAAAAAAACACAA-TCAAGAAGAGCTCT---GGCTTCCATTTTTGGAAA---------AT------------ACAATATATTTGTAATATATAAAGTTATTAAAT-----------GCACAAAATTGTGACCCTTTTGTAATAGACTACCTTatctagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaatgtgactctcatgtagaaggtgtccttaatcataattttaaaaagtaccaaaaaccatgttgtgacatttctaatttatttacatttccttttgtgattttcctccaaggtatttcaccttacaacataaatcatgtccaattactttgttttttatttactgaattacgctggtttgttttacaaaatttataagattttaaatcacgaatattgatgacaatacataaaacagtactgctcactgacagtacttaccactttactgatgatgacaaagagtattcgatttaagacaaatttactaaaaacctatgaaaaagacaaaagtaaattacatttttacatatttcatttcattaatttcaataacactctttgctcttgttacatgaccaatactggtgttgacataaacaaattaagtggatctagtccatgcataggacaaatgttttggtagaaaattacacctagaattaacagtaacatcgcatttggattgaattgtatcaataaaactggatgaatattctaaaatatctttttttgttactttggatcggaaatgaaagaaattgcttttttgaagaaatgggtcccgggacacatgtctacagtttaaaatacaggtcctcatttgaaaagtgcatcatagacacatgaaa
gi|7 : ttcctaggatgtttcattttgggcctaagcacctttactaaactattctaagggtccTTT-AGGG-TCC-GGA----------------------C-TATTAGAC----ACCATTCTGATCTG-CAGTG-C---C-TTTTTTATT-----T-TATTGGCATCATTTTATTCAT----GAA------------------------------CACAA-CCCAGCAGGGTTATTGCTGCTTGCATATTTGGAAATGA
gi|8 : agggttttccttaggatttggggttcaagaaccgctccaataatattttaactgtccccaaaaccaatCACAAACCCAGCAGGGTTCT---TGCTTGCATATTTGGGAATGAGGATGGAAAAATGACATTACCCACGGTCCTT-CAACATACATAAC-----AATATGTGTTTTAAGTATAAAAATAAGATTCTCATGTAGAAG---GCCTTCTCAATCAT-AATTTT--AAAAAGT-ACTCAAAAC-TGTGTCATGACATTTGTAATTCATTT--ATCTTAAAGCTCAAACCCCCAAAACT----------------TT-----TACATCATGCCTctcgatgaggttgaaaaaaaaatgctttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaatgtgattctcatgcagaaggtttccttaatcataattttgaaaaatacccaataccacgacagttctttttctgttttatttgtaatatattttttttataact
gi|3 : tatatgttattatgtacagggttttccctaggatttttcatttgggggtccaaggacccatacaataatgttttaagggttcaaataccaattttggtggtcaccgactattagacatcatgctgatcttcatgaaAAAATG--ACCTTCTTTTAGAAGA--AT-TTAAAAATCATCAATATT--AAAAAAAATCCCAAAAC-CTTTTCATGGCATTCCTCATTTATTTACATTTC----CTTATA---TTAAAGCTCAATATCAACAAGAATTT-----TCCGTCATGCCTG-GCTTATTTGC-------------AAAGCTTATAAATCGCGAATAC---TGA--TTAC---ATTACGTACAA--TAGTAGACTGTTCATTTGCAAAA-CAAAT-CA-CTGATGCTTATGATA-CATCACGATTTTGATGGAATT-GTTGCAATAA-A------AGTGAATA-TATA
gi|6 : tctaggcttttttatttgtgggttaaggacccctataataatattttaagggtcccaacctattaggcatcatgctgatctgataaggctttttattttttattgcaaccttttattcgtgaagacaggtgtcacaacccagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAAAGGTGACCTTCTTTTAGAAGACG---TTAAAAATCATCAATATTGAAAAAAAG-TCCCAAAAC-CTTTGAATGA--CTCCTCATTTATTTACATTCC----ATTATA---ATAAAGCT----------------tctcattaaaattttctttgctttcttttccttttgaaactagaaattgtgttactttggataggaaaggaatgaacgacattgcgtttttgcggaaacgtgtcccggatttaatgagatttaaactacgaatcctcagtcgaaaaagtgcgtcagga
gi|2 : ggtttttcatttgtgggttaaggaccactacaataatatttttaagggtcccaaactattaggcatcatgctgatctgatgaggctttttattgcaaccttttattcataatgaaagacagctgtcagctgtaaaatcacaacccatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAAATGTGACTCTCATGTAGAAGGTGTCCTTAA---TCATAATT-TT--AAAAAGT-ACCAAAAACCATGTT-GTGACATTTCTAATTTATTTACATTTC----CTTTTG---TGA----T----------------TT-----TCCcaatatccataaga
gi|17 : gttccctagaatattcaatttgggagtccaaggaccactacaataatattttaagtggccaaacaccaatttttggggttccgactattagacatcatgctgatctgcagcacatttttatattttgtcattcttttattcattaacacaatctagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTCCTCATTTATTTACATTTC----CTTATG---TTAAACCT----------------tccaaggtatttcaccttacaacataaatcatgtccaattactttgttttttatttactgaattacgctggtttgttttacaaaatttataagattttaaatcacgaatattgatgacaatacataaaacagtactgctcactgacagtacttaccactttactgatgatgacaaagagtattcgatttaagacaaatttactaaaaacctatgaaaaagacaaaagtaaattacatttttacatatttcatttcattaatttcaataacactctttgctcttgttacatgaccaatactggtgttgacataaacaaattaagtggatctagtccatgcataggacaaatgttttggtagaaaattacacctagaattaacagtaacatcgcatttggattgaattgtatcaataaaactggatgaatattctaaaatatctttttttgttactttggatcggaaatgaaagaaattgcttttttgaagaaatgggtcccgggacacatgtctacagtttaaaatacaggtcctcatttgaaaagtgcatcatagacacatgaaa
gi|10 : cCATTCC----TTTGTT---TTAA---T----------------TCAC---TCAACTATGCTGG-TCTATTTTACCATATTTATTAATAAAGATTCTAAATCGCGAATAC---CGA--TGAC---ATTACATAAAAAACAGTACACTGCCCACTTGCAGTA-CCAATTCA-CCGATGTTTATGATGACA-AA-GAT-----TGG--TC-ATTGTAAGAATA------ATTcaagatcccatagacgtttccattgcacctggcttggaaatgttttcccaagtatttcaccctgacatatcaataactatgtcccattacct
gi|15 : ttgtaattcatttatcttaaagctcaaacccccaaaacttttacatcatgccttgcttgaaaatgtgatttccccacaaggtatttcacccttacaacagtaatcatgtccTA---CTGAAACT----------------TTGCTGGTTTGTTTTACCTGATCCA-TTTGT-------------AAAAACTTTAAATCGCAAATAT---GGA--TGAT---ATTACCTGAAA--CAGTTAACTGTTCATTAGCAGTATTTATT-CA-CTGAAGTTGATAATG-CA-
gi|4 : ttACT----------------TT-----TCCGTCATGCCTG-GCTTATTTGC-------------AAAGCTTCTTAATTGCGAATACAGATGACATTATGTAATTACGTATAA--CAGTA--CTGTTCATTTGCAATA-CAAATTCA-CTGATGCTTACTATG-CA-AGCGAT-----TGG--TC-ATTGTAATAATA------ATTTACAA-TATAGACTTAAAAAAATATGAAAA--AGAC--AAACATAATTGCGTTAAAACACATTTTATATCAA-AAATTTCAACAACTCTCAGATTCTCACAACACTTGTCACGTGATCAATAAC-GGTGTATAC-GTAAACAAATGGTAGTGCATATGATCCGCTACATGCAGTTC-TATGTTGGGAAAACACTTTGGTGGAAAA--TAAC----A---AA----AACATCACGATTTTGATGGAATTGTTGCAATAAAAGCAAATGTATATCT-CCAAATATTTTCTTTGGTTTCTTTTCCTTTTGAAAGTAGGAATTTTGTTCATTTGGATGGGAAAAGGAAAGGAATAAACGGCACTGCTTTTTTGCAGAAACGTGTCCA-GG--------------------------AGTCCTTGGTCG---ATCTGCATCAGTGACGC--AAGAAAAACTCAGGACTGTGTTCAGTTTGAT
gi|2 : caggAATTTAT-------------AAGATTT-TAAATCACGAATAT---TGA--TGAC---AATACATAAAA--CAGT--ACTGCTCACTGACAGTA-CTTAC-CACTT--TACTGATGATGACA-AA-GAG-----TAT--TCGATT-TAAGACAA------ATTT----------ACT-AAAAACCTATGAAAA--AGACAAAAGTA-AATTACATTTTTACATATTTCAT-TTCATTAATTTCAATAACACTC---TTTGCT-----CTTGTTACATGACCAA-TACTGGTGT-TGACATAAACAAATTA-AGTG-----GATCTAGTCCATG---------CATAGGACAAATGTTTTGGTAGAAAATTACACCTAGAATTAACAGTAACATCGC-ATTTGGATTGAATTGTATCAATAAAACTGGATGAATAT-TCTAAAATATCTTTTTTTGTTACTTT
gi|9 : gttccctagaatattcaatttgggagtccaaggaccactacaataatattttaagtggccaaacaccaatttttggggttccgactattagacatcatgctgatctgcagcacatttttatattttgtcattcttttattcattaacacaatctagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaatgtgactctcatgtagaaggtgtccttaatcataattttaaaaagtaccaaaaaccatgttgtgacatttctaatttatttacatttccttttgtgattttcctccaaggtatttcaccttacaacataaatcatgtccaattactttgttttttatttactgaattacgctggtttgttttacaaTGT-------------AAAGATTCCAAATCGCGAATAT---AGA--TGAC---ATTAAGTAAAG--CAGTGG-CTTCTCGTTTACAGTA-TGAATTCA-CAGACG-TTATT-TG--A-AATAAA-----TGA--TC-ATTGTAACAGTA------ATTTATGT-TACATACT-AATTAAGTACAAAAATTACAA--AAGTA-AACTACATTAAAACATATTTTAG-TTGATAAAT-TCAGT--CTT--GGGT-----CAAT--T---------ACCCATAAC-AGTGT-TGAGGTAAACAAACACTAGTGCATATGATTCAATATGTCCGATCCAGACATGGACAAAACA-TTTGGTggatcggaaatgaaagaaattgcttttttgaagaaatgggtcccgggacacatgtctacagtttaaaatacaggtcctcatttgaaaagtgcatcatagacacatgaaa
gi|13 : ttattcatgtaacttctttggtctgttacaGC-------------AAAGCTTCTAAATCGCAAATAC---CAA--CGAC---ATTACGTACAA--CAGTAGGCTGTTCATTTGCAATA-CAAAT-CA-CTGATGTTTACGATG-CA-AATGAT-----TGA--TC-ATTGTAAGAATACTAAAGATTTAATATTATAGAttacaaaacattgcgat
gi|3 : ATGA----TACATCACGATTTTGATGGAATTGTTGCAATAAAAGTGAATATATATCTCATTAAAATTTTCTTTGCTTTCTTTTCCTTTTGAAACTAGAAATTGTGTTACTTTGGAT------AGGAAAGGAATGAACGACATTGCGTTTTTGCGGAAACGTGTCCC-GGATTTAA---TGAGATTTAAACT-ACGAATCCTCAGTCGAAAAAGTGCGTCAGtaaatttaaagaaat
gi|5 : tctaggcttttttatttgtgggttaaggacccctataataatattttaagggtcccaacctattaggcatcatgctgatctgataaggctttttattttttattgcaaccttttattcgtgaagacaggtgtcacaacccagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaatgaccttcttttagaagaatttaaaaatcatcaatattaaaaaaaatcccaaaaccttttcatggcattcctcatttatttacatttccttatattaaagctcaatatcaacaagaattttccgtcatgcctggcttatttgcaaagcttataaatcgcgaatactgattacattacgtacaatagtagactgttcatttgcaaaacaaatcactgatgcttTCTTTCCCTTTTGAAATTAGGAATTTTGTTACTTTGGATGGTAAAAGGAAAGGAATGAACTACATTGCTTTTTTGCGGAAACGTGTACC-GAAAGTAA---TGGAATTAAAAAT-ACAAGTCCTCGGTCAAAAATGT---T----GACGCAAAAAAAAAAACCA-----GGGCTGCGTTCAGTTAAACga
gi|16 : TCTTTGCATTGTGAATTTTGGAATTTTGTTACTTTGGATTGGGAAAAAAAAGGAgtttgataacgttggctaacatatgtttctgtacactgactctaactcataatagcacgcagttgcgataatgttagggcaccaggcattaaacctgtttgtcggtgaggaacacatatagactaccattttgagatgttcccatgagcacaggcgctttataatgctttatacctcataagcgtctccatgatgtttgatgaaggagcggaaaggcatcgaatgaaagcaaagagaaaaaatttaacaaattttttttccacaaaaaaaggttatggttggggctaaaaaaaatagggttggtcagaatactggaaacaaacatatatattttttaggcctgaatggtatgggaatttaaaactatttccttttcgtaattattaacttt
gi|2 : TTTTGTTACTTTGGATCGG-AAATGAAAGAA---------ATTGCTTTTTTGAAGAAATGGGTCCCGGGACACATGTCTACAGTTTAAAAT-ACAGGTCCTCATTTGAAAA-GTGCATCATAGACAC--ATGAAAtactatttgcatttggggattgggcagaaacacagagcgaaggctcaggggggttcaaaccaatgacactcggcc
gi|5 : gttccctagaatattcaatttgggagtccaaggaccactacaataatattttaagtggccaaacaccaatttttggggttccgactattagacatcatgctgatctgcagcacatttttatattttgtcattcttttattcattaacacaatctagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaatgtgactctcatgtagaaggtgtccttaatcataattttaaaaagtaccaaaaaccatgttgtgacatttctaatttatttacatttccttttgtgattttcctccaaggtatttcaccttacaacataaatcatgtccaattactttgttttttatttactgaattacgctggtttgttttacaaaatttataagattttaaatcacgaatattgatgacaatacataaaacagtactgctcactgacagtacttaccactttactgatgatgacaaagagtattcgatttaagacaaatttactaaaaacctatgaaaaagacaaaagtaaattacatttttacatatttcatttcattaatttcaataacactctttgctcttgttacatgaccaatactggtgttgacataaacaaattaagtggatctagtccatgcataggacaaatgttttggtagaaaattacacctagaattaacagtaacatcgcatttggattgaattgtatcaataaaactggatgaatattctaaaatatctttGACTACCATTTTGAGATGTTCCCATGAGCACAGGCGCTTTATAATGCTTTATACCTCATAAGCGTCTCCATGATGTTTGATGAAGGAGCGGAAAGGCATCGAATGAAAGCAAAGAGAAAAAATT-TAACAAATT-TTTTTTCCACAA--------AAAAAGGTTATGGTTGGGGCTAAAAAAAATAGGGTTGGTCAGAATACTGGAAACAAACATATATATTTTTTAGGCCT
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|19 ): AAATAAGATTCTCATGTAGAAGGCCTTCTCAATCATAATTTTAAAAAGTACTCAAAACTGTGTCATGACAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 111 8888888888888888888888888888888888888888888888888888888888888888 3333333333333333333333 2222222 11111 2222 111 999999999999999999999999999999999999999999999999999999999999999 111 222 2 11 1111 111 3333333333333333 11111 11111111 11111 11111 111111 1111 11 11 2 1 555555555555 1 333 111 11 222222222 1 1 77777777777777777777 11 222222222222 222 11 3333333 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 77777777777777777777777 2 11 2 77777777 1 1 22222
lowQualScore : 00000 4 5 222 6 8 3333333333333333333333333333333333333333333333333333333333333333 8 1 5555555555555555555555 8 8888 7 8 1111111 22222 5 5 0 1111 5 5 0 66 5 1 444 3 2 888888888888888888888888888888888888888888888888888888888888888 0 0 5 3 7 999 111 2 5 77 8888 00 4 5 5 4444 000 0 3333333333333333 66666 1 6 1 5 88888888 66 888 11111 9 8 5 5 8 44444 77 5 1 1 666666 6666 8 1 33 33 0 2 0 66 3 3 77 777 888888888888 2 0 00 0 000 6666 2 111 00 2 0 888888888 1 1 0 0 44444444444444444444 0 2 2 11 1 3 2 2 1 1 7 8 3 999999999999 1 0 8 0 6 1 222 33 1 1 8888888 0 22 0 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 2 2 55555555555555555555555 3 0 88 0 22222222 3 5 5 2 77777 4 4
lowQualScore : ..... . . ... . . ................................................................ . . ...................... . .... . . ....... ..... . . . .... . . . .. . . ... . . ............................................................... . . . . . ... ... . . .. .... .. . . . .... ... . ................ ..... . . . . ........ .. ... ..... . . . . . ..... .. . . . ...... .... . . .. .. . . . .. . . .. ... ............ . . .. . ... .... . ... .. . . ......... . . . . .................... . . . .. . . . . . . . . . ............ . . . . . . ... .. . . ....... . .. . ............................................................................................................................... . . ....................... . . .. . ........ . . . . ..... . .
lowQualScore : 00000 0 6 444 3 0 0000000000000000000000000000000000000000000000000000000000000000 0 0 5555555555555555555555 0 5555 3 9 4444444 55555 0 0 5 2222 0 0 8 99 7 0 000 4 8 222222222222222222222222222222222222222222222222222222222222222 8 8 0 6 2 555 999 1 9 99 1111 33 7 0 0 2222 000 8 1111111111111111 77777 0 2 0 4 11111111 99 888 66666 4 5 0 0 9 33333 99 7 0 7 444444 8888 0 0 88 88 0 0 0 22 2 2 88 000 222222222222 5 2 55 0 888 5555 5 222 88 5 2 555555555 0 0 5 5 99999999999999999999 2 0 5 88 2 2 5 5 0 5 5 0 2 666666666666 0 6 0 8 0 4 222 88 2 0 0000000 7 00 7 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 5 55555555555555555555555 0 0 00 0 55555555 0 5 0 5 00000 0 0
consensus : GGGTTTTTC-----A-TTTGTGGGT-T-AAGGACCGCTACAATAATA-TTTTA---------------------A---------------------G--------------------GGT-CCNA----------------------A-CTATTAGGC----ATCATGCTGATCTGATAA-G-C---T-TTTTATTTT-----T-TATT-GCAACCTTTTATTCAT----GAAGACAG-CT-GTCAGCTGTAAAAT--CACAA-CCCAGNAGGGCTCT---TGCTTGCATNTTTGGGAATGAGNNTGGAGAAATGACATTACCCANGATCCTTGCAATATACATAGCTATTAAATATGTGTTTTAAGTATAAAAA-TGTGACCCTCATGTAGAAGGCGNCCTTAAAAATCAT-AATNTT--AAAAAGTA-CCCAAAACCGTNTCATGACA-TTCCTCATTTATTTACATTTC----CTTATA---TTAAAACT----------------TT-----TCCGTCATGCCTGGCTNATTTGCAAAGNTTCTAAATCGCGAATACCGATGACATTACGTAA--------AA--CAGTAGACTGTTCATTTGCAGTACG----AATTCACTGATGCTTATGATG-CA-AACGAT-----TGG--TC-ATTGTAAGAATA------ATTTAANA-TATAGACT-AAAAAAGTACGAAAA--AGACAA--GCATAATTGCATTAAAACACATTTTAT-TTAATAAATTTCAATAACTCTCGGAT--TCNCA--ATACTTGTCACGTGACCAATAACGGTGT-TG-A-GTAAACAAACGGTAGTGCATATGATCCGCTACGTGCGGTC-C--ACG--TAGGGAAAACGTTTTGGTAGAAAATTACAC---GAAT-AA----AACATCGCGATTTTGATGGAATTGTTGCAATAAAAGCGAATGTATATCTCCNAAATATTTTCTTTGGTTTCTTTTCCTTTTGAAATTAGGAATTTTGTTACTTTGGATGGGAAAAGGAAAGGAATGAACGACATTGCTTTTTTGCGGAAACGTGTCCC-GGACGCAATG----GAATTTAAAAT-ACGAGTCCTCGGTCGAAAATGTGCGTCA-G-GACGC--AAGAAAAACCCAGG---GTGTTNAGTTCGGTTAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGCAGCTCTGACTACCATTTTGAGATGCTCCCATGAGCACAGGNGCTTTATAATGCTTTATACCTCATAANCGTCTCCATGATGTTTGATGAAGGAGCGGAAAGGCATCGGATGANAGCAAAGAGAAAAAATTATAACGGATTCTTTTTTCCACAATATCGGTCAAAAAGGTTANGGTCGGGGCTAAAAAAGATAGGGTCGGTCGGGATACTGGAAANAAACATATNTNTTTTTTAGGCCT
Reference ( family-1262 ) : GGGTTTTTC-----A-TTTGTGGGT-T-AAGGACCACTACAATAATA-TTTTA---------------------A---------------------G--------------------GGT-CCNA----------------------A-CTATTAGGC----ATCATGCTGATCTGATAA-G-C---T-TTTTATTTT-----T-TATT-GCAACCTTTTATTCAT----GAAGACAG-CT-GTCAGCTGTAAAAT--CACAA-CCCAGNAGGGTTCT---TGCTTGCATATTTGGAAATGAGGATGGANAAATGACATTACNCANNGTNCTTGCAACATACANAGCTATTAAATATGTGTTTTAAGCACAAAAA-TGTGACCCTCTTGTAGAAGACGACCTTAAAAATCATCAATATT--AAAAAGNN-CCCAAAACCTTTTCATGACA-TTCCTCATTTATTTACATTTC----CTTATA---TTAAAACT----------------TT-----TCCGTCATGCCTGNCTAATTTGCAAAGNTTCTAAATCGCGAATACCGATGACATTACGTAA--------AA--CAGTAGACTGCTCATTTGCAGTACN----AATTCACTGATGCTTATGATG-CA-AACGAT-----TGG--TC-ATTGTAANAATA------ATTTANNA-TATAGACT-AAAAAANTACGAAAA--AGACAA--GTA-AATTACGTTAAAACATATTTTAT-TCGATAAATTTCAATAACTCTCGGGT--TCCCA--AC-CTTGTCACGTGACCAATAACGGTGT-TG-A-GTAAACAAACGNTAGTGCATATGATCCGNTACGTGCGGTC-C--ACG--TNGGNAAAACGCTTTGGTGGAAAATTNNACCTAGAAT-AA----AACATCGCGATTTTGATGGAATTGTTGCAATAAAAGCGAATGTATATCTCNNAAATATTTTCTTTGGTTTCTTTTCCTTTTGAAATTAGGAATTTTGTTACTTTGGATNGGAAAAGGAAAGGAATGAACGACATTGCTTTTTTGCGGAAACGTGTCCC-GGACGTAATG----NAATTTAAAAT-ACGAGTCCTCGGTCGAAAATGTGCGTCA-G-GACGC--AAGAAAAANCCAGGACTGNGCTNNGTTCGGTTAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACTACCATTTTGAGATGTTCCCATGAGCACAGGCGCTTTATAATGCTTTATACCTCATAAGCGTCTCCATGATGTTTGATGAAGGAGCGGAAAGGCATCGAATGAAAGCAAAGAGAAAAAATT-TAACAAATT-TTTTTTCCACAA--------AAAAAGGTTATGGTTGGGGCTAAAAAAAATAGGGTTGGTCAGAATACTGGAAACAAACATATATATTTTTTAGGCCT
gi|1 : GGGTTTTTC-----A-TTTG-----------GACCG-TACAATAATA-GTTTA---------------------G---------------------G--------------------GGT-CCAA----------------------A-CTATTAGGC----ATCATGCTGATCTGATAA-G-C---T-TTTTATTTT-----T-TATT-GCAACCTTTTATTCAT----GAAGACAG-CT-GT-------AAAAT--CACAA-CCCAGAAGGGCCCT---TGCTTGCACTTTTGGGAATGAGCTTGGAG------------CCAGGATCCTT-CAATATACATAGC-----AAT-----------GTATAAAAA-TGTGACCCTCATTTAGAAGACAACCTTAAAAATCTTAAATATT--AAAAATTT-CCCAAAACATTTTCATGAAA-TGCCTCATTTATTTACATTTC----CTTATA---TTAAAACT----------------TT-----TCCGTCATGCCTGTCTAATTTGCAAAGTTTCTAAATCGCGACTATTGATTATATTACGTAC--------AT--CAGTAGACTGTTCATTTGCAATACA----AA-TCATTGATGCTTATGATG-CA-AACGAT-----TGG--TC-ATTGTAAGAATA------ATTTAAGA-TATAGACC-AAAAAAGTACAAAAA--AGACGA--GCATAATTGCATTAAAACACATTTTAT-TTAATAAATATCAATGACTTTCGGATTCTCCCA--ATACTTGTCATGTGATCAATTACGTTGT-TATG-GTAAACAAATGGTAGTGCATATGATTTGCTACATGCGATCTT--ACA--TAGGGAAAATGTTTTGGTAGAAAA--AAAC---AAAT-AA----AACATCACGATTTTGATGGAATTGTTACAATAAAAGTGAATATTTATCTCCCAAACATTTTGTTTGGTTTCTTTTTCTTTTGAAATTAGGAATTTTGTTACTTTGGATGGGAAAAGGAAAGGAATTACCGACATTGCTTTTTTGCGGAAATGTGTACC-GGATGCATTG----GAATTTAAAATAATAAGTCCTTGGTTGAAAATGTGCGTCA-GAGATGC--AGGAAAAACCCA-----GTGTTTAGTTTGGTTAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGCAGCTCTGACTACCATTTTGAGATGCTCCCATGAGCACAAAGGCTTTATAATGCTTTATACCTTATAATCGTCTCCATGATGTT-----------------------GGATGACAGCAAAGAGAAAAAATTATA--GGATTCTTTTTTTCACAATATCGGTCAAAAAGATTAGGGTCGGGGCT-AAAAAGATAGGGTC-GTTGGGATACTGGAAAGA-----ATTTTTTTTTTAGACCT
gi|10 : AAAGATTCTAAATCGCGAATACCGATGACATTACATAA--------AAAACAGTACACTGCCCACTTGCAGTACC----AATTCACCGATGTTTATGATGACA-AA-GAT-----TGG--TC-ATTGTAAGAATA------ATTtaccctaatgtcacttgtgataatttattaa
gi|11 : ttgtaattcatttatcttaaagctcaaacccccaaaacttttacatcatgccttgcttgaaaatgtgatttccccacaaggtatttcacccttacaacagtaatcatgtcccattcctttgttttaattcactcaactatgctggtctattttaccatatttattaatGGATGTTTC-----A-TTT-TGGGCCT-AAGCACCTTTACTAAACTA-TTCTA---------------------A---------------------GGGTCCCAACATCAATTTTGGGGT-CCTG----------------------A-CAAGTAGACTAATATCATGCTAATATG-TCT-G-C---CATTTTATTTTATTGTTATATT-GCTCCCTTCAATT-AT----GAAGACAG-CT-GCCAGCTGTAAAAAAACACAA-TCAAGAAGAGCTCT---GGCTTCCATTTTTGGAAA---------------------ATACAATATATTTGTAATATATAAAGTTATTAAAT-----------GCACAAAAT-TGTGACCCTTTTGTAATAGACTACCTT
gi|12 : ttcctaGGATTTTTC-----A-TTTTTGGGT-T-AAAGACC-CTACAATAATA-CTTTA---------------------A---------------------G--------------------GGT-CCCA----------------------AACTATCAGGC----ATCATGCTGATCTGATAA-GGC---T-TTTTATTTT-----T-TATT-GCAACCTTTTATTCAT----GAAGACAG-CT-GTCAGCTGTAAAAT--CACA
gi|13 : tccctaGCAAAGCTTCTAAATCGCAAATACCAACGACATTACGTAC--------AA--CAGTAGGCTGTTCATTTGCAATACA----AA-TCACTGATGTTTACGATG-CA-AATGAT-----TGA--TC-ATTGTAAGAATACTAAAGATTTAATATTATAGA-T-AAAcc
gi|14 : GGTTTTTC-----A-TTTGTGGGT-T-AAGGACCACTACAATAATATTTTTA---------------------A---------------------G--------------------GGTCCCAA----------------------A-CTATTAGGC----ATCATGCTGATCTGATGA-G-----------GCTTT-----T-TATT-GCAACCTTTTATTCATAATGAAAGACAG-CT-GTCAGCTGTAAAAT--CACAA-CCCtttaaagaaat
gi|15 : TA---CTGAAACT----------------TTGCTGGTTTGTTTTACCTGATCCATTTGTAAAAACTTTAAATCGCAAATATGGATGATATTACCTGA--------AA--CAGTTAACTGTTCATTAGCAGTATT----TATTCACTGAAGTTGATAATG-CA-
gi|16 : ttTCTTTGCATTGTGAATTTTGGAATTTTGTTACTTTGGATTGGGAAAAAAAAGGA
gi|17 : CA-TTCCTCATTTATTTACATTTC----CTTATG---TTAAACCT----------------tactatttgcatttggggattgggcagaaacacagagcgaaggctcaggggggttcaaaccaatgacactcggcc
gi|18 : GGATTTTC-----A-TTTGTAGGT-T-GAGGACCACTACAATAATA--TTTA---------------------A---------------------G--------------------GGT-CCCA----------------------A-CTTTTAGGC----ATCATGCTGATATGATAA-G-caagatcccatagacgtttccattgcacctggcttggaaatgttttcccaagtatttcaccctgacatatcaataactatgtcccattacct
gi|19 : taAAA-TAAGATTCTCATGTAGAAGGC---CTTCTCAATCAT-AATTTT--AAAAAGTA-CTCAAAACTGTGTCATGACA-Tgc
gi|2 : TTC-----AATTTGGGAGT-CCAAGGACCACTACAATAATA-TTTTA---------------------AGTGGCCAAACACCAATTTTTGG--------------------GGT-TCCG----------------------A-CTATTAGAC----ATCATGCTGATCTG--CA-G-CACAT-TTTTATATT-----T-TGT---CATTCTTTTATTCAT----TAACACAATCTAGNNNNNNNNNNNNN--NNNNN-NNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATGTGACTCTCATGTAGAAGGTGTCCTT---AATCAT-AATTTT--AAAAAGTA-CCAAAAACCATGTTGTGACA-TTTCTAATTTATTTACATTTC----CTTTTG---TGA----T----------------TT-----TCC
gi|2 : gttccctagaataAATTTATAA-GATTTTAAATCACGAATATTGATGACAATACATAA--------AA--CAGTA--CTGCTCACTGACAGTACTTACCACTTTACTGATG---ATGA---CA-AA-GAG-----TAT--TCGATT-TAAGACAA------ATTTA----------CT-AAAAACCTATGAAAA--AGACAAAAGTA-AATTACATTTTTACATATTTCAT-TTCATTAATTTCAATAACACTC---T--TTGC----T-CTTGTTACATGACCAATACTGGTGT-TG-ACATAAACAAATTA-AGTG-----GATC---TA------GTC-C--ATGCATAGGACAAATGTTTTGGTAGAAAATTACACCTAGAATTAACAGTAACATCGC-ATTTGGATTGAATTGTATCAATAAAACTGGATGAATAT-TCTAAAATA------------TCTTTT------------------TTTGTTACTTTGGATCGGAAA----------TGAAAGAAATTGCTTTTTTGAAGAAATGGGTCCCGGGACAC-ATGTCTACAGTTTAAAAT-ACAGGTCCTCATTTGAAAA-GTGCATCATA-GACAC--ATGAAAtccaaggtatttcaccttacaacataaatcatgtccaattactttgttttttatttactgaattacgctggtttgttttacaaaatttataagattttaaatcacgaatattgatgacaatacataaaacagtactgctcactgacagtacttaccactttactgatgatgacaaagagtattcgatttaagacaaatttactaaaaacctatgaaaaagacaaaagtaaattacatttttacatatttcatttcattaatttcaataacactctttgctcttgttacatgaccaatactggtgttgacataaacaaattaagtggatctagtccatgcataggacaaatgttttggtagaaaattacacctagaattaacagtaacatcgcatttggattgaattgtatcaataaaactggatgaatattctaaaatatctttttttgttactttggatcggaaatgaaagaaattgcttttttgaagaaatgggtcccgggacacatgtctacagtttaaaatacaggtcctcatttgaaaagtgcatcatagacacatgaaa
gi|3 : gttccctagaatattcaatttgggagtccaaggaccactacaataatattttaagtggccaaacaccaatttttggggttccgactattagacatcatgctgatctgcagcacatttttatattttgtcattcttttattcattaacacaatctagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaatgtgactctcatgtagaaggtgtccttaatcataattttaaaaagtaccaaaaaccatgttgtgacatttctaatttatttacatttccttttgtgattttcctccaaggtatttcaccttacaacataaatcatgtccaattactttgttttttatttactgaattacgctggtttgttttacaaGGCTTTTTT-----A-TTTGTGGGT-T-AAGGACCCCTATAATAATA-TTTTA---------------------A---------------------G--------------------GGT-CCCA----------------------ACCTATTAGGC----ATCATGCTGATCTGATAAGG-C---T-TTTTATTTT-----T-TATT-GCAACCTTTTATTCGT----GAAGACAG-GT-GTCA
gi|3 : tctaAAAA-TG--ACCTTCTTTTAGAAGA--AT-TTAAAAATCATCAATATT--AAAAAAAATCCCAAAACCTTTTCATGGCA-TTCCTCATTTATTTACATTTC----CTTATA---TTAAAGCTCAATATCAACAAGAATTT-----TCCGTCATGCCTGGCTTATTTGCAAAGCTTATAAATCGCGAATACTGATTACATTACGTAC--------AA--TAGTAGACTGTTCATTTGCAAAACA----AA-TCACTGATGCTTATGATA-CATCACGATTTTGATGGAATT-GTTGCAATAA-A------AGTGAATA-TATAcaacccagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaatgaccttcttttagaagaatttaaaaatcatcaatattaaaaaaaatcccaaaaccttttcatggcattcctcatttatttacatttccttatattaaagctcaatatcaacaagaattttccgtcatgcctggcttatttgcaaagcttataaatcgcgaatactgattacattacgtacaatagtagactgttcatttgcaaaacaaatcactgatgcttatgatacatcacgattttgatggaattgttgcaataaaagtgaatatatatctcattaaaattttctttgctttcttttccttttgaaactagaaattgtgttactttggataggaaaggaatgaacgacattgcgtttttgcggaaacgtgtcccggatttaatgagatttaaactacgaatcctcagtcgaaaaagtgcgtcagga
gi|3 : tctaggcttttttatttgtgggttaaggacccctataataatattttaagggtcccaacctattaggcatcatgctgatctgataaggctttttattttttattgcaaccttttattcgtgaagacaggtgtcacaacccagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAT-GA----TACATCACGATTTTGATGGAATTGTTGCAATAAAAGTGAATATATATCTCATTAAAATTTTCTTTGCTTTCTTTTCCTTTTGAAACTAGAAATTGTGTTACTTTGGAT------AGGAAAGGAATGAACGACATTGCGTTTTTGCGGAAACGTGTCCC-GGATTTAATG----AGATTTAAACT-ACGAATCCTCAGTCGAAAAAGTGCGTCA-G-GAtctcattaaaattttctttgctttcttttccttttgaaactagaaattgtgttactttggataggaaaggaatgaacgacattgcgtttttgcggaaacgtgtcccggatttaatgagatttaaactacgaatcctcagtcgaaaaagtgcgtcagga
gi|4 : tctaggcttttttatttgtgggttaaggacccctataataatattttaagggtcccaacctattaggcatcatgctgatctgataaggctttttattttttattgcaaccttttattcgtgaagacaggtgtcacaacccagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaatgaccttcttttagaagaatttaaaaatcatcaatattaaaaaaaatcccaaaaccttttcatggcattcctcatttatttacatttccttatattaaagctcaatatcaacaagaattttccgtcatgcctggcttatttgcaaagcttataaatcgcgaatactgattacattacgtacaatagtagactgttcatttgcaaaacaaatcactgatgcttACT----------------TT-----TCCGTCATGCCTGGCTTATTTGCAAAGCTTCTTAATTGCGAATACAGATGACATTATGTAATTACGTATAA--CAGTA--CTGTTCATTTGCAATACA----AATTCACTGATGCTTACTATG-CA-AGCGAT-----TGG--TC-ATTGTAATAATA------ATTTACAA-TATAGACTTAAAAAAATATGAAAA--AGACAA--ACATAATTGCGTTAAAACACATTTTATATCAA-AAATTTCAACAACTCTCAGAT--TCTCACAACACTTGTCACGTGATCAATAACGGTGTATA-C-GTAAACAAATGGTAGTGCATATGATCCGCTACATGCAGTT-CT-ATG--TTGGGAAAACACTTTGGTGGAAAATAACA---------AA----AACATCACGATTTTGATGGAATTGTTGCAATAAAAGCAAATGTATATCTCC-AAATATTTTCTTTGGTTTCTTTTCCTTTTGAAAGTAGGAATTTTGTTCATTTGGATGGGAAAAGGAAAGGAATAAACGGCACTGCTTTTTTGCAGAAACGTGTCCA-G---------------------------GAGTCCTTGGTCG---ATCTGCATCA-GTGACGC--AAGAAAAACTCAGGACTGTGTTCAGTTTGAT
gi|5 : caggTCTTTCCCTTTTGAAATTAGGAATTTTGTTACTTTGGATGGTAAAAGGAAAGGAATGAACTACATTGCTTTTTTGCGGAAACGTGTACC-GAAAGTAATG----GAATTAAAAAT-ACAAGTCCTCGGTCAAAAATGT---T-----GACGCAAAAAAAAAAACCAGG-----GCTGCGTTCAGTTAAAC
gi|5 : GACTACCATTTTGAGATGTTCCCATGAGCACAGGCGCTTTATAATGCTTTATACCTCATAAGCGTCTCCATGATGTTTGATGAAGGAGCGGAAAGGCATCGAATGAAAGCAAAGAGAAAAAATT-TAACAAATT-TTTTTTCCACAA--------AAAAAGGTTATGGTTGGGGCTAAAAAAAATAGGGTTGGTCAGAATACTGGAAACAAACATATATATTTTTTAGGCCTgtttgataacgttggctaacatatgtttctgtacactgactctaactcataatagcacgcagttgcgataatgttagggcaccaggcattaaacctgtttgtcggtgaggaacacatatagactaccattttgagatgttcccatgagcacaggcgctttataatgctttatacctcataagcgtctccatgatgtttgatgaaggagcggaaaggcatcgaatgaaagcaaagagaaaaaatttaacaaattttttttccacaaaaaaaggttatggttggggctaaaaaaaatagggttggtcagaatactggaaacaaacatatatattttttaggcctgaatggtatgggaatttaaaactatttccttttcgtaattattaacttt
gi|6 : tctttcccttttgaaattaggaattttgttactttggatggtaaaaggaaaggaatgaactacattgcttttttgcggaaacgtgtaccgaaagtaatggaattaaaaatacaagtcctcggtcaaaaatgttgacgcaaaaaaaaaaaccagggctgcgttcagttaaacgtttgataacgttggctaacatatgtttctgtacactgactctaactcataatagcacgcagttgcgataatgttagggcaccaggcattaaacctgtttgtcggtgaggaacacatataGGTTTTTC-----A-TTTGTGGGT-T-AAGGACCACTACAATAATATTTTTA---------------------A---------------------G--------------------GGTCCCAA----------------------A-CTATTAGGC----ATCATGCTGATCTGATGA-G-----------GCTTT-----T-TATT-GCAACCTTTTATTCATAATGAAAGACAG-CT-GTCAGCTGTAAAAT--CACAA-CCCAgaatggtatgggaatttaaaactatttccttttcgtaattattaacttt
gi|6 : AAAA-GGTGACCTTCTTTTAGAAGACG---TTAAAAATCATCAATATTGAAAAAAAGT-CCCAAAACCTTTGAATGAC---TCCTCATTTATTTACATTCC----ATTATA---ATAAAGCT----------------tannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaaggtgaccttcttttagaagacgttaaaaatcatcaatattgaaaaaaagtcccaaaacctttgaatgactcctcatttatttacattccattataataaagctcaatatccataaga
gi|7 : ggtttttcatttgtgggttaaggaccactacaataatatttttaagggtcccaaactattaggcatcatgctgatctgatgaggctttttattgcaaccttttattcataatgaaagacagctgtcagctgtaaaatcacaacccatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGGTTTTCCTTAGGA-TTTG-GGGT-TCAAGAACCGCTCCAATAATA-TTTTAACTGTCCCCAAAACCAATTTTA---------------------G--------------------GGT-CCGG----------------------A-CTATTAGAC----ACCATTCTGATCTG-CAGTG-C---C-TTTTTTATT-----T-TATTGGCATCATTTTATTCAT----GAA-------------------------CACAA-CCCAGCAGGGTTATTGCTGCTTGCATATTTGGAAATGAcaatatccataaga
gi|7 : aAGAA-TGTGATTCTCATGCAGAAGGTTTCCTT---AATCAT-AATTTT--GAAAAATA-CCCAATAC-----CACGACAGTTCTTTTTCTGTTT-TATTTctcgatgaggttgaaaaaaaaatgctttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaatgtgattctcatgcagaaggtttccttaatcataattttgaaaaatacccaataccacgacagttctttttctgttttatttgtaatatattttttttataact
gi|8 : agggttttccttaggatttggggttcaagaaccgctccaataatattttaactgtccccaaaaccaattttagggtccggactattagacaccattctgatctgcagtgccttttttattttattggcatcattttattcatgaacacaacccagcagggttattgctgcttgcatatttggaaatgactcgatgaggttgaaaaaaaaatgctttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGATTTTTC-----A-TTTGGGGGT-CCAAGGACCCATACAATAATG-TTTTA---------------------A---------------------G--------------------GGT-TCAAATACCAATTTTGGTGGTCACCGA-CTATTAGAC----ATCATGCTGATCTgtaatatattttttttataact
gi|8 : tatatgttattatgtacagggttttcccta--CACAAACCCAGCAGGGTTCT---TGCTTGCATATTTGGGAATGAGGATGGAAAAATGACATTACCCACGGTCCTT-CAACATACATAAC-----AATATGTGTTTTAAGTATAAAAA-TAAGATTCTCATGTAGAA---GGCCTTCTCAATCAT-AATTTT--AAAAAGTA-CTCAAAACTGTGTCATGACA-TTTGTAATTCATTT--ATCTTAAAGCTCAAACCCCCAAAACT----------------TT-----TACATCATGCCTtcatgaacacaaacccagcagggttcttgcttgcatatttgggaatgaggatggaaaaatgacattacccacggtccttcaacatacataacaatatgtgttttaagtataaaaataagattctcatgtagaaggccttctcaatcataattttaaaaagtactcaaaactgtgtcatgacatttgtaattcatttatcttaaagctcaaacccccaaaacttttacatcatgcct
gi|9 : tatatgttattatgtacagggttttccctaggatttttcatttgggggtccaaggacccatacaataatgttttaagggttcaaataccaattttggtggtcaccgactattagacatcatgctgatcttcatgaaTGTAAAGATTCCAAATCGCGAATATAGATGACATTAAGTAA--------AG--CAGT-GGCTTCTCGTTTACAGTATG----AATTCACAGACG-TTATT-TG--A-AATAAA-----TGA--TC-ATTGTAACAGTA------ATTTATGT-TACATACT-AATTAAGTACAAAAATTACAAAA--GTA-AACTACATTAAAACATATTTTAG-TTGATAAA-TTCAG----TCTTGGGT-----CA--A---TT--------ACCCATAACAGTGT-TG-AGGTAAACAAACACTAGTGCATATGATTCAATATGTCCGATC-CAGACA--TGGACAAAACA-TTTGGT------TT---------AC-AA----AACATTGCGAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 111 8888888888888888888888888888888888888888888888888888888888888888 3333333333333333333333 2222222 11111 2222 111 33333333333333333333333 1 9999999999999999999 111 111 1 111 1111 111 2222222222222222 11111 11111111 11111 11111 111111 1111 111 11 11 1 1 33333333 1 333 11 3333333 5555555555555555 111 222222222222 222 11 333333 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 77777777777777777777777 1 11 1 33333333 1 1 22222
lowQualScore : 00000 4 5 222 8 8 3333333333333333333333333333333333333333333333333333333333333333 8 1 5555555555555555555555 8 8888 7 8 1111111 22222 5 5 0 1111 5 5 0 77 5 1 444 1 5 66666666666666666666666 5 7 3333333333333333333 5 3 0 2 333 444 1 5 1 000 77 88 1 5 5 4444 000 9999999999999999 44444 8 1 1 5 88888888 66 888 88888 3 8 5 5 8 44444 77 5 0 1 666666 6666 8 444 33 33 5 0 0 3 3 77 6 0 888 88888888 3 0 00 0 000 5555 2 999 00 2 0 4444444 1 0 7 7 66 0000000000000000 0 2 2 888 7 3 2 2 1 1 6 8 3 888888888888 1 0 8 0 6 1 222 33 1 555555 1 0 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 1 55555555555555555555555 1 5 88 5 44444444 1 5 5 1 77777 1 1
lowQualScore : ..... . . ... . . ................................................................ . . ...................... . .... . . ....... ..... . . . .... . . . .. . . ... . . ....................... . . ................... . . . . ... ... . . . ... .. .. . . . .... ... ................ ..... . . . . ........ .. ... ..... . . . . . ..... .. . . . ...... .... . ... .. .. . . . . . .. . . ... ........ . . .. . ... .... . ... .. . . ....... . . . . .. ................ . . . ... . . . . . . . . . ............ . . . . . . ... .. . ...... . . ................................................................................................................... . . ....................... . . .. . ........ . . . . ..... . .
lowQualScore : 00000 0 6 444 9 0 0000000000000000000000000000000000000000000000000000000000000000 0 0 5555555555555555555555 0 5555 3 9 4444444 55555 0 0 5 2222 0 0 8 99 7 0 000 0 4 88888888888888888888888 2 8 0000000000000000000 0 6 8 2 888 777 4 7 0 000 44 33 0 0 0 2222 000 4444444444444444 33333 2 0 0 4 11111111 99 888 00000 2 5 0 0 9 33333 99 7 7 7 444444 8888 0 000 88 88 5 0 8 2 2 88 5 8 000 00000000 2 2 55 0 888 8888 5 222 88 5 2 5555555 2 2 0 0 88 2222222222222222 2 0 5 888 0 2 5 5 0 5 7 0 2 666666666666 0 6 0 8 0 4 222 88 2 000000 0 7 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 55555555555555555555555 0 5 00 0 55555555 0 5 0 0 00000 0 0
consensus : GGGTTTTTC-----A-TTTGTGGGT-T-AAGGACCGCTACAATAATA-TTTTA---------------------A---------------------G--------------------GGT-CCNA----------------------A-CTATTAGGC----ATCATGCTGATCTGATAA-G-C---T-TTTTATTTT-----T-TATT-GCAACCTTTTATTCAT----GAAGACAG-CT-GTCAGCTGT--AAAATCACAA-CCCAGNAGGGCTCT---TGCTTGCATNTTTGGGAATGAGNNTGGAAAAATGACANTACCCANGATCCTTGCAATATACATAGCTATTAAATATGTGTTTTAAGTATAAAAA-TGTGACCCTCATGTAGAAGGCNNCCTTAAAAATCAT-AA-TNTT---AAAAAGTA-CCCAAAACCGTNTCATGACA-TTCCTCATTTATTTACATTTC----CTTATA---TTAAAACT----------------TT-----TCCGTCATGCCTGGCTTATTTGCAAAGNTTCTAAATCGCGAATACCGATGACATTACGTAA--------AA--CAGTAGACTGTTCATTTGCAGTACG----AATTCACTGATGCTTATGATG-CA-AACGAT-----TGG--TC-ATTGTAAGAATA------ATTTAANA-TATAGACT-AAA---AAAGTACGAAAA--AGACAA--GCATAATTGCATTAAAACACATTTTAT-TTAATAAATTTCAATAACTCTCGGATTCTC--A--ATACTTGTCACGTGACCAATAACGGTGT-TG-A-GTAAACAAACGGTAGTGCATATGATCCGCTACGTGCGGTCCT-ACG--TAGGGAAAACGTTTTGGTAGAAAATTACAC---GAAT-AA----AACATCGCGATTTTGATGGAATTGTTGCAATAAAAGCGAATGTATATCTC-CNAAATATTTTCTTTGGTTTCTTTTCCTTTTGAAATTAGGAATTTTGTTACTTTGGATGGGAAAAGGAAAGGAATGAACGACATTGCTTTTTTGCGGAAACGTGTCCC-GGACGCAATG----GAATTTAAAAT-ACGAGTCCTCGGTCGAAAATGTGCGTCA-G-GACGC--AAGAAAAACCCAGG---GTGTTNAGTTCGGTTAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGCAGCTCTGACTACCATTTTGAGATGCTCCCATGAGCACAGGNGCTTTATAATGCTTTATACCTCATAANCGTCTCCATGATGTTTGATGAAGGAGCGGAAAGGCATCGGATGANAGCAAAGAGAAAAAATTATAACGGATTCTTTTTTCCACAATATCGGTCAAAAAGGTTANGGTCGGGGCTAAAAAAGATAGGGTCGGTCGGGATACTGGAAANAAACATATNTNTTTTTTAGGCCT
Reference ( family-1262 ) : GGGTTTTTC-----A-TTTGTGGGT-T-AAGGACCGCTACAATAATA-TTTTA---------------------A---------------------G--------------------GGT-CCNA----------------------A-CTATTAGGC----ATCATGCTGATCTGATAA-G-C---T-TTTTATTTT-----T-TATT-GCAACCTTTTATTCAT----GAAGACAG-CT-GTCAGCTGT--AAAATCACAA-CCCAGNAGGGCTCT---TGCTTGCATNTTTGGGAATGAGNNTGGAGAAATGACATTACCCANGATCCTTGCAATATACATAGCTATTAAATATGTGTTTTAAGTATAAAAA-TGTGACCCTCATGTAGAAGGCGNCCTTAAAAATCAT-AA-TNTT---AAAAAGTA-CCCAAAACCGTNTCATGACA-TTCCTCATTTATTTACATTTC----CTTATA---TTAAAACT----------------TT-----TCCGTCATGCCTGGCTNATTTGCAAAGNTTCTAAATCGCGAATACCGATGACATTACGTAA--------AA--CAGTAGACTGTTCATTTGCAGTACG----AATTCACTGATGCTTATGATG-CA-AACGAT-----TGG--TC-ATTGTAAGAATA------ATTTAANA-TATAGACT-AAA---AAAGTACGAAAA--AGACAA--GCATAATTGCATTAAAACACATTTTAT-TTAATAAATTTCAATAACTCTCGGATTCNC--A--ATACTTGTCACGTGACCAATAACGGTGT-TG-A-GTAAACAAACGGTAGTGCATATGATCCGCTACGTGCGGTCC--ACG--TAGGGAAAACGTTTTGGTAGAAAATTACAC---GAAT-AA----AACATCGCGATTTTGATGGAATTGTTGCAATAAAAGCGAATGTATATCTC-CNAAATATTTTCTTTGGTTTCTTTTCCTTTTGAAATTAGGAATTTTGTTACTTTGGATGGGAAAAGGAAAGGAATGAACGACATTGCTTTTTTGCGGAAACGTGTCCC-GGACGCAATG----GAATTTAAAAT-ACGAGTCCTCGGTCGAAAATGTGCGTCA-G-GACGC--AAGAAAAACCCAGG---GTGTTNAGTTCGGTTAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGCAGCTCTGACTACCATTTTGAGATGCTCCCATGAGCACAGGNGCTTTATAATGCTTTATACCTCATAANCGTCTCCATGATGTTTGATGAAGGAGCGGAAAGGCATCGGATGANAGCAAAGAGAAAAAATTATAACGGATTCTTTTTTCCACAATATCGGTCAAAAAGGTTANGGTCGGGGCTAAAAAAGATAGGGTCGGTCGGGATACTGGAAANAAACATATNTNTTTTTTAGGCCT
gi|1 : GGGTTTTTC-----A-TTTG-----------GACCG-TACAATAATA-GTTTA---------------------G---------------------G--------------------GGT-CCAA----------------------A-CTATTAGGC----ATCATGCTGATCTGATAA-G-C---T-TTTTATTTT-----T-TATT-GCAACCTTTTATTCAT----GAAGACAG-CT-GT---------AAAATCACAA-CCCAGAAGGGCCCT---TGCTTGCACTTTTGGGAATGAGCTTGGAG------------CCAGGATCCTT-CAATATACATAGC-----AAT-----------GTATAAAAA-TGTGACCCTCATTTAGAAGACAACCTTAAAAATCTT-AAATATT---AAAAATTT-CCCAAAACATTTTCATGAAA-TGCCTCATTTATTTACATTTC----CTTATA---TTAAAACT----------------TT-----TCCGTCATGCCTGTCTAATTTGCAAAGTTTCTAAATCGCGACTATTGATTATATTACGTAC--------AT--CAGTAGACTGTTCATTTGCAATACA----AAT-CATTGATGCTTATGATG-CA-AACGAT-----TGG--TC-ATTGTAAGAATA------ATTTAAGA-TATAGACC-AAA---AAAGTACAAAAA--AGACGA--GCATAATTGCATTAAAACACATTTTAT-TTAATAAATATCAATGACTTTCGGATTCTCCCA--ATACTTGTCATGTGATCAATTACGTTGT-TATG-GTAAACAAATGGTAGTGCATATGATTTGCTACATGCGATCTT-ACA--TAGGGAAAATGTTTTGGTAGAAAA--AAAC---AAAT-AA----AACATCACGATTTTGATGGAATTGTTACAATAAAAGTGAATATTTATCTC-CCAAACATTTTGTTTGGTTTCTTTTTCTTTTGAAATTAGGAATTTTGTTACTTTGGATGGGAAAAGGAAAGGAATTACCGACATTGCTTTTTTGCGGAAATGTGTACC-GGATGCATTG----GAATTTAAAATAATAAGTCCTTGGTTGAAAATGTGCGTCA-GAGATGC--AGGAAAAACCCA-----GTGTTTAGTTTGGTTAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGCAGCTCTGACTACCATTTTGAGATGCTCCCATGAGCACAAAGGCTTTATAATGCTTTATACCTTATAATCGTCTCCATGATGTT-----------------------GGATGACAGCAAAGAGAAAAAATTATA--GGATTCTTTTTTTCACAATATCGGTCAAAAAGATTAGGGTCGGGGCT-AAAAAGATAGGGTC-GTTGGGATACTGGAAAGA-----ATTTTTTTTTTAGACCT
gi|10 : TTATTAATAAAGATTCTAAATCGCGAATACCGATGACATTACATAA--------AAAACAGTACACTGCCCACTTGCAGTACC----AATTCACCGATGTTTATGATGACA-AA-GAT-----TGG--TC-ATTGTAAGAATA------ATTtaccctaatgtcacttgtgataatttattaa
gi|11 : ttgtaattcatttatcttaaagctcaaacccccaaaacttttacatcatgccttgcttgaaaatgtgatttccccacaaggtatttcacccttacaacagtaatcatgtcccattcctttgttttaattcactcaactatgctggtctattttaccatatGGATGTTTC-----A-TTT-TGGGCCT-AAGCACCTTTACTAAACTA-TTCTA---------------------A---------------------GGGTCCCAACATCAATTTTGGGGT-CCTG----------------------A-CAAGTAGACTAATATCATGCTAATATG-TCT-G-C---CATTTTATTTTATTGTTATATT-GCTCCCTTCAATT-AT----GAAGACAG-CT-GCCAGCTGTAAAAAAACACAA-TCAAGAAGAGCTCT---GGCTTCCATTTTTGG-------------AAAAT-ACAATAT-----AT--TTGTAATATATAAAGTTATTAAAT-----------GCACAAAAT-TGTGACCCTTTTGTAATAGACTACCTT
gi|12 : ttcctaGGATTTTTC-----A-TTTTTGGGT-T-AAAGACC-CTACAATAATA-CTTTA---------------------A---------------------G--------------------GGT-CCCA----------------------AACTATCAGGC----ATCATGCTGATCTGATAA-GGC---T-TTTTATTTT-----T-TATT-GCAACCTTTTATTCAT----GAAGACAG-CT-GTCAGCTGT--AAAATCACA
gi|13 : tccctaGCAAAGCTTCTAAATCGCAAATACCAACGACATTACGTAC--------AA--CAGTAGGCTGTTCATTTGCAATACA----AA-TCACTGATGTTTACGATG-CA-AATGAT-----TGA--TC-ATTGTAAGAATACTAAAGATTTAATATTATAGA-T-AAATTTAAAGcc
gi|14 : GGTTTTTC-----A-TTTGTGGGT-T-AAGGACCACTACAATAATATTTTTA---------------------A---------------------G--------------------GGTCCCAA----------------------A-CTATTAGGC----ATCATGCTGATCTGATGA-G-----------GCTTT-----T-TATT-GCAACCTTTTATTCATAATGAAAGACAG-CT-GTCAGCTGT--AAAATCACAA-CCCaaat
gi|15 : TA---CTGAAACT----------------TTGCTGGTTTGTTTTACCTGATCCATTTGTAAAAACTTTAAATCGCAAATATGGATGATATTACCTGA--------AA--CAGTTAACTGTTCATTAGCAGTATT----TATTCACTGAAGTTGATAATG-CA-
gi|16 : ttTCTTTGCATTGTGAATTTTGGAATTTTGTTACTTTGGATTGGGAAAAAAAAGGA
gi|17 : CA-TTCCTCATTTATTTACATTTC----CTTATG---TTAAACCT----------------tactatttgcatttggggattgggcagaaacacagagcgaaggctcaggggggttcaaaccaatgacactcggcc
gi|18 : GGATTTTC-----A-TTTGTAGGT-T-GAGGACCACTACAATAATA-TTT-A---------------------A---------------------G--------------------GGT-CCCA----------------------A-CTTTTAGGC----ATCATGCTGATATGATAA-G-caagatcccatagacgtttccattgcacctggcttggaaatgttttcccaagtatttcaccctgacatatcaataactatgtcccattacct
gi|19 : taAAA-TAAGATTCTCATGTAGAAGGCCTTCTCAA---TCAT-AA-TTTT---AAAAAGTA-CTCAAAACTGTGTCATGACA-Tgc
gi|2 : TTC-----AATTTGGGAGT-CCAAGGACCACTACAATAATA-TTTTA---------------------AGTGGCCAAACACCAATTTTTGG--------------------GGT-TCCG----------------------A-CTATTAGAC----ATCATGCTGATCTG--CA-G-CACAT-TTTTATATT-----T-TGT---CATTCTTTTATTCAT----TAACACAATCTAGNNNNNNNN--NNNNNNNNNN-NNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATGTGACTCTCATGTAGAAGGTGTCCTT---AATCAT-AA-TTTT---AAAAAGTA-CCAAAAACCATGTTGTGACA-TTTCTAATTTATTTACATTTC----CTTTTG---TGA----T----------------TT-----TCC
gi|2 : gttccctagaataAAGATTTTAAATCACGAATATTGATGACAATACATAA--------AA--CAGTA--CTGCTCACTGACAGTACTTACCACTTTACTGATG---ATGA---CA-AA-GAG-----TAT--TCGATT-TAAGACAA------ATTTA----------CT-AAA---AACCTATGAAAA--AGACAAAAGTA-AATTACATTTTTACATATTTCAT-TTCATTAATTTCAATAACACTC---TTTGC------T-CTTGTTACATGACCAATACTGGTGT-TG-ACATAAACAAATTA-AGTG-----GATC---TA------GTCC--ATGCATAGGACAAATGTTTTGGTAGAAAATTACACCTAGAATTAACAGTAACATCGC-ATTTGGATTGAATTGTATCAATAAAACTGGATGAATAT-TC-TAAAATA------------TCTTTT------------------TTTGTTACTTTGGATCGGAAA----------TGAAAGAAATTGCTTTTTTGAAGAAATGGGTCCCGGGACAC-ATGTCTACAGTTTAAAAT-ACAGGTCCTCATTTGAAAA-GTGCATCATA-GACAC--ATGAAAtccaaggtatttcaccttacaacataaatcatgtccaattactttgttttttatttactgaattacgctggtttgttttacaaaatttataagattttaaatcacgaatattgatgacaatacataaaacagtactgctcactgacagtacttaccactttactgatgatgacaaagagtattcgatttaagacaaatttactaaaaacctatgaaaaagacaaaagtaaattacatttttacatatttcatttcattaatttcaataacactctttgctcttgttacatgaccaatactggtgttgacataaacaaattaagtggatctagtccatgcataggacaaatgttttggtagaaaattacacctagaattaacagtaacatcgcatttggattgaattgtatcaataaaactggatgaatattctaaaatatctttttttgttactttggatcggaaatgaaagaaattgcttttttgaagaaatgggtcccgggacacatgtctacagtttaaaatacaggtcctcatttgaaaagtgcatcatagacacatgaaa
gi|3 : gttccctagaatattcaatttgggagtccaaggaccactacaataatattttaagtggccaaacaccaatttttggggttccgactattagacatcatgctgatctgcagcacatttttatattttgtcattcttttattcattaacacaatctagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaatgtgactctcatgtagaaggtgtccttaatcataattttaaaaagtaccaaaaaccatgttgtgacatttctaatttatttacatttccttttgtgattttcctccaaggtatttcaccttacaacataaatcatgtccaattactttgttttttatttactgaattacgctggtttgttttacaaaatttatGGCTTTTTT-----A-TTTGTGGGT-T-AAGGACCCCTATAATAATA-TTTTA---------------------A---------------------G--------------------GGT-CCCA----------------------ACCTATTAGGC----ATCATGCTGATCTGATAAGG-C---T-TTTTATTTT-----T-TATT-GCAACCTTTTATTCGT----GAAGACAG-GT-GTCA
gi|3 : tctaAAAA-TG--ACCTTCTTTTAGAAG---AATTTAAAAATCATCAA-TATT---AAAAAAAATCCCAAAACCTTTTCATGGCA-TTCCTCATTTATTTACATTTC----CTTATA---TTAAAGCTCAATATCAACAAGAATTT-----TCCGTCATGCCTGGCTTATTTGCAAAGCTTATAAATCGCGAATACTGATTACATTACGTAC--------AA--TAGTAGACTGTTCATTTGCAAAACA----AA-TCACTGATGCTTATGATA-CATCACGATTTTGATGGAATT-GTTGCAATAA-A------AGTGAATA-TATAcaacccagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaatgaccttcttttagaagaatttaaaaatcatcaatattaaaaaaaatcccaaaaccttttcatggcattcctcatttatttacatttccttatattaaagctcaatatcaacaagaattttccgtcatgcctggcttatttgcaaagcttataaatcgcgaatactgattacattacgtacaatagtagactgttcatttgcaaaacaaatcactgatgcttatgatacatcacgattttgatggaattgttgcaataaaagtgaatatatatctcattaaaattttctttgctttcttttccttttgaaactagaaattgtgttactttggataggaaaggaatgaacgacattgcgtttttgcggaaacgtgtcccggatttaatgagatttaaactacgaatcctcagtcgaaaaagtgcgtcagga
gi|3 : tctaggcttttttatttgtgggttaaggacccctataataatattttaagggtcccaacctattaggcatcatgctgatctgataaggctttttattttttattgcaaccttttattcgtgaagacaggtgtcacaacccagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAT-GA----TACATCACGATTTTGATGGAATTGTTGCAATAAAAGTGAATATATATCTCATTAAA-ATTTTCTTTGCTTTCTTTTCCTTTTGAAACTAGAAATTGTGTTACTTTGGAT------AGGAAAGGAATGAACGACATTGCGTTTTTGCGGAAACGTGTCCC-GGATTTAATG----AGATTTAAACT-ACGAATCCTCAGTCGAAAAAGTGCGTCA-G-GAtctcattaaaattttctttgctttcttttccttttgaaactagaaattgtgttactttggataggaaaggaatgaacgacattgcgtttttgcggaaacgtgtcccggatttaatgagatttaaactacgaatcctcagtcgaaaaagtgcgtcagga
gi|4 : tctaggcttttttatttgtgggttaaggacccctataataatattttaagggtcccaacctattaggcatcatgctgatctgataaggctttttattttttattgcaaccttttattcgtgaagacaggtgtcacaacccagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaatgaccttcttttagaagaatttaaaaatcatcaatattaaaaaaaatcccaaaaccttttcatggcattcctcatttatttacatttccttatattaaagctcaatatcaacaagaattttccgtcatgcctggcttatttgcaaagcttataaatcgcgaatactgattacattacgtacaatagtagactgttcatttgcaaaacaaatcactgatgcttACT----------------TT-----TCCGTCATGCCTGGCTTATTTGCAAAGCTTCTTAATTGCGAATACAGATGACATTATGTAATTACGTATAA--CAGTA--CTGTTCATTTGCAATACA----AATTCACTGATGCTTACTATG-CA-AGCGAT-----TGG--TC-ATTGTAATAATA------ATTTACAA-TATAGACTTAAA---AAAATATGAAAA--AGACAA--ACATAATTGCGTTAAAACACATTTTATATCAA-AAATTTCAACAACTCTCAGATTCTC--ACAACACTTGTCACGTGATCAATAACGGTGTATA-C-GTAAACAAATGGTAGTGCATATGATCCGCTACATGCAGTTCT-ATG--TTGGGAAAACACTTTGGTGGAAAATAACA---------AA----AACATCACGATTTTGATGGAATTGTTGCAATAAAAGCAAATGTATATCTC-C-AAATATTTTCTTTGGTTTCTTTTCCTTTTGAAAGTAGGAATTTTGTTCATTTGGATGGGAAAAGGAAAGGAATAAACGGCACTGCTTTTTTGCAGAAACGTGTCCA-G---------------------------GAGTCCTTGGTCG---ATCTGCATCA-GTGACGC--AAGAAAAACTCAGGACTGTGTTCAGTTTGAT
gi|5 : caggTCTTTCCCTTTTGAAATTAGGAATTTTGTTACTTTGGATGGTAAAAGGAAAGGAATGAACTACATTGCTTTTTTGCGGAAACGTGTACC-GAAAGTAATG----GAATTAAAAAT-ACAAGTCCTCGGTCAAAAATGT---T-----GACGCAAAAAAAAAAACCAGG-----GCTGCGTTCAGTTAAAC
gi|5 : GACTACCATTTTGAGATGTTCCCATGAGCACAGGCGCTTTATAATGCTTTATACCTCATAAGCGTCTCCATGATGTTTGATGAAGGAGCGGAAAGGCATCGAATGAAAGCAAAGAGAAAAAATT-TAACAAATT-TTTTTTCCACAA--------AAAAAGGTTATGGTTGGGGCTAAAAAAAATAGGGTTGGTCAGAATACTGGAAACAAACATATATATTTTTTAGGCCTgtttgataacgttggctaacatatgtttctgtacactgactctaactcataatagcacgcagttgcgataatgttagggcaccaggcattaaacctgtttgtcggtgaggaacacatatagactaccattttgagatgttcccatgagcacaggcgctttataatgctttatacctcataagcgtctccatgatgtttgatgaaggagcggaaaggcatcgaatgaaagcaaagagaaaaaatttaacaaattttttttccacaaaaaaaggttatggttggggctaaaaaaaatagggttggtcagaatactggaaacaaacatatatattttttaggcctgaatggtatgggaatttaaaactatttccttttcgtaattattaacttt
gi|6 : tctttcccttttgaaattaggaattttgttactttggatggtaaaaggaaaggaatgaactacattgcttttttgcggaaacgtgtaccgaaagtaatggaattaaaaatacaagtcctcggtcaaaaatgttgacgcaaaaaaaaaaaccagggctgcgttcagttaaacgtttgataacgttggctaacatatgtttctgtacactgactctaactcataatagcacgcagttgcgataatgttagggcaccaggcattaaacctgtttgtcggtgaggaacacatataGGTTTTTC-----A-TTTGTGGGT-T-AAGGACCACTACAATAATATTTTTA---------------------A---------------------G--------------------GGTCCCAA----------------------A-CTATTAGGC----ATCATGCTGATCTGATGA-G-----------GCTTT-----T-TATT-GCAACCTTTTATTCATAATGAAAGACAG-CT-GTCAGCTGT--AAAATCACAA-CCCAgaatggtatgggaatttaaaactatttccttttcgtaattattaacttt
gi|6 : AAAA-GGTGACCTTCTTTTAGAAGACG---TTAAAAATCATCAA-TATTGAAAAAAAGT--CCCAAAACCTTTGAATGAC---TCCTCATTTATTTACATTCC----ATTATA---ATAAAGCT----------------tannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaaggtgaccttcttttagaagacgttaaaaatcatcaatattgaaaaaaagtcccaaaacctttgaatgactcctcatttatttacattccattataataaagctcaatatccataaga
gi|7 : ggtttttcatttgtgggttaaggaccactacaataatatttttaagggtcccaaactattaggcatcatgctgatctgatgaggctttttattgcaaccttttattcataatgaaagacagctgtcagctgtaaaatcacaacccatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGGTTTTCCTTAGGA-TTTG-GGGT-TCAAGAACCGCTCCAATAATA-TTTTAACTGTCCCCAAAACCAATTTTA---------------------G--------------------GGT-CCGG----------------------A-CTATTAGAC----ACCATTCTGATCTG-CAGTG-C---C-TTTTTTATT-----T-TATTGGCATCATTTTATTCAT----GAA-------------------------CACAA-CCCAGCAGGGTTATTGCTGCTTGCATATTTGGAAATGAcaatatccataaga
gi|7 : aAGAA-TGTGATTCTCATGCAGAAGGTTTCCTTAA---TCAT-AA-TTTT---GAAAAATA-CCCAA-----TACCACGACAGTTCTTTTTCTGTTT-TATTTctcgatgaggttgaaaaaaaaatgctttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaatgtgattctcatgcagaaggtttccttaatcataattttgaaaaatacccaataccacgacagttctttttctgttttatttgtaatatattttttttataact
gi|8 : agggttttccttaggatttggggttcaagaaccgctccaataatattttaactgtccccaaaaccaattttagggtccggactattagacaccattctgatctgcagtgccttttttattttattggcatcattttattcatgaacacaacccagcagggttattgctgcttgcatatttggaaatgactcgatgaggttgaaaaaaaaatgctttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGATTTTTC-----A-TTTGGGGGT-CCAAGGACCCATACAATAATG-TTTTA---------------------A---------------------G--------------------GGT-TCAAATACCAATTTTGGTGGTCACCGA-CTATTAGAC----ATCATGCTGATCTgtaatatattttttttataact
gi|8 : tatatgttattatgtacagggttttccctaCACAAACCCAGCAGGGTTCT---TGCTTGCATATTTGGGAATGAGGATGGAAAAATGACATTACCCACGGTCCTT-CAACATACATAAC-----AATATGTGTTTTAAGTATAAAAA-TAAGATTCTCATGTAGAAGGCCTTCTC---AATCAT-AA-TTTT---AAAAAGTA-CTCAAAACTGTGTCATGACA-TTTGTAATTCATTT--ATCTTAAAGCTCAAACCCCCAAAACT----------------TT-----TACATCATGCCTtcatgaacacaaacccagcagggttcttgcttgcatatttgggaatgaggatggaaaaatgacattacccacggtccttcaacatacataacaatatgtgttttaagtataaaaataagattctcatgtagaaggccttctcaatcataattttaaaaagtactcaaaactgtgtcatgacatttgtaattcatttatcttaaagctcaaacccccaaaacttttacatcatgcct
gi|9 : tatatgttattatgtacagggttttccctaggatttttcatttgggggtccaaggacccatacaataatgttttaagggttcaaataccaattttggtggtcaccgactattagacatcatgctgatcttcatgaaAACT----------------TC-----TTTG----GTCTG--TTACATGTAAAGATTCCAAATCGCGAATATAGATGACATTAAGTAA--------AG--CAGT-GGCTTCTCGTTTACAGTATG----AATTCACAGACG-TTATT-TG--A-AATAAA-----TGA--TC-ATTGTAACAGTA------ATTTATGT-TACATACT-AAT---TAAGTACAAAAATTACAAAA--GTA-AACTACATTAAAACATATTTTAG-TTGATAAA-TTCAG----TCTTGGGT---C--A--AT--T---------ACCCATAACAGTGT-TG-AGGTAAACAAACACTAGTGCATATGATTCAATATGTCCGATCCAGACA--TGGACAAAACA-TTTGGT------TTAC----------AA----AACATTGCGAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 111 8888888888888888888888888888888888888888888888888888888888888888 3333333333333333333333 2222222 11111 2222 111 33333333333333333333333333333333333333 1 9999999999999999999 111 111 1 111 1111 111 33333333333333333333333333333333333 11111 11111111 11111 11111 111111 1111 111 11 11 1 1 1111111 444444444 1 333 11 2 5555555555555555 111 222222222222 222 11 333333 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 77777777777777777777777 1 11 1 33333333 1 1 22222
lowQualScore : 00000 4 5 222 8 8 3333333333333333333333333333333333333333333333333333333333333333 8 1 5555555555555555555555 8 8888 7 8 1111111 22222 5 5 0 1111 5 5 0 77 5 1 444 1 88888888888888888888888888888888888888 5 7 3333333333333333333 5 3 0 222 444 1 5 1 000 77 88 1 5 5 4444 000 55555555555555555555555555555555555 11111 3 1 5 88888888 66 888 88888 3 8 5 5 8 44444 77 5 0 1 666666 6666 8 444 33 33 5 0 0 3 3 77 7777777 000000000 3 0 00 0 000 5555 2 999 00 2 0 0 2 1 0 7 7 66 0000000000000000 0 2 2 888 7 3 2 2 1 1 6 8 3 888888888888 1 0 8 0 6 1 222 33 1 555555 1 0 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 1 55555555555555555555555 1 5 88 5 44444444 1 5 5 1 77777 1 1
lowQualScore : ..... . . ... . . ................................................................ . . ...................... . .... . . ....... ..... . . . .... . . . .. . . ... . ...................................... . . ................... . . . ... ... . . . ... .. .. . . . .... ... ................................... ..... . . . ........ .. ... ..... . . . . . ..... .. . . . ...... .... . ... .. .. . . . . . .. ....... ......... . . .. . ... .... . ... .. . . . . . . . . .. ................ . . . ... . . . . . . . . . ............ . . . . . . ... .. . ...... . . ................................................................................................................... . . ....................... . . .. . ........ . . . . ..... . .
lowQualScore : 00000 0 6 444 9 0 0000000000000000000000000000000000000000000000000000000000000000 0 0 5555555555555555555555 0 5555 3 9 4444444 55555 0 0 5 2222 0 0 8 99 7 0 000 0 99999999999999999999999999999999999999 2 8 0000000000000000000 0 6 8 000 777 4 7 0 000 44 33 0 0 0 2222 000 33333333333333333333333333333333333 11111 0 0 4 11111111 99 888 00000 2 5 0 0 9 33333 99 7 7 7 444444 8888 0 000 88 88 5 0 8 2 2 88 5555555 222222222 2 2 55 0 888 8888 5 222 88 5 2 0 0 2 2 0 0 88 2222222222222222 2 0 5 888 0 2 5 5 0 5 7 0 2 666666666666 0 6 0 8 0 4 222 88 2 000000 0 7 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 55555555555555555555555 0 5 00 0 55555555 0 5 0 0 00000 0 0
consensus : GGGTTTTTC-----A-TTTGTGGGT-T-AAGGACCGCTACAATAATA-TTTTA---------------------A---------------------G--------------------GGT-CCNA----------------------A-CTATTAGGC----ATCATGCTGATCTGATAA-G-C---T-TTTTATTTT-----T-TATT-GCAACCTTTTATTCAT----GAAGACAG-CT-GTCAGCTGT--AAAATCACAA-CCCAGNAGGGCTCT---TGCTTGCATNTTTGGGA--------ATGAGGTTGGAAAAATGACANTACCCANGATCCTTGCAATATACATAGCTATTAAATATGTGTTTTAAGTATAAAAA-TGTGACCCTCATGTAGAAGGCNTCCTTAAAAATCAT-AA-TNTT---AAAAAGTA-CCCAAAACCGTNTCATGACA-TTCCTCATTTATTTACATTTC----CTTATA---TTAAA----------------ACT----------------TT-----TCCGTCATGCCTGGCTTATTTGCAAAGNTTCTAAATCGCGAATACCGATGACATTACGTAA--------AA--CAGTAGACTGTTCATTTGCAGTACG----AATTCACTGATGCTTATGATG-CA-AACGAT-----TGG--TC-ATTGTAAGAATA------ATTTAANA-TATAGACT-AAA---AAAGTACGAAAA--AGACAA--GCATAATTGCATTAAAACACATTTTAT-TTAATAAATTTCAATAACTCTCGGATT--CTC--A--ATACTTGTCACGTGACCAATAACGGTGT-TG-A-GTAAACAAACGGTAGTGCATATGATCCGCTACGTGCGGTCCATACGTAGGGAAAACGTTTTGGTAGAAAATTACAC---GAAT-AA----AACATCGCGATTTTGATGGAATTGTTGCAATAAAAGCGAATGTATATCTC-CNAAATATTTTCTTTGGTTTCTTTTCCTTTTGAAATTAGGAATTTTGTTACTTTGGATGGGAAAAGGAAAGGAATGAACGACATTGCTTTTTTGCGGAAACGTGTCCC-GGACGCAATG----GAATTTAAAAT-ACGAGTCCTCGGTCGAAAATGTGCGTCA-G-GACGC--AAGAAAAACCCAGG---GTGTTNAGTTCGGTTAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGCAGCTCTGACTACCATTTTGAGATGCTCCCATGAGCACAGGNGCTTTATAATGCTTTATACCTCATAANCGTCTCCATGATGTTTGATGAAGGAGCGGAAAGGCATCGGATGANAGCAAAGAGAAAAAATTATAACGGATTCTTTTTTCCACAATATCGGTCAAAAAGGTTANGGTCGGGGCTAAAAAAGATAGGGTCGGTCGGGATACTGGAAANAAACATATNTNTTTTTTAGGCCT
Reference ( family-1262 ) : GGGTTTTTC-----A-TTTGTGGGT-T-AAGGACCGCTACAATAATA-TTTTA---------------------A---------------------G--------------------GGT-CCNA----------------------A-CTATTAGGC----ATCATGCTGATCTGATAA-G-C---T-TTTTATTTT-----T-TATT-GCAACCTTTTATTCAT----GAAGACAG-CT-GTCAGCTGT--AAAATCACAA-CCCAGNAGGGCTCT---TGCTTGCATNTTTGGGA--------ATGAGNNTGGAAAAATGACANTACCCANGATCCTTGCAATATACATAGCTATTAAATATGTGTTTTAAGTATAAAAA-TGTGACCCTCATGTAGAAGGCNNCCTTAAAAATCAT-AA-TNTT---AAAAAGTA-CCCAAAACCGTNTCATGACA-TTCCTCATTTATTTACATTTC----CTTATA---TTAAA----------------ACT----------------TT-----TCCGTCATGCCTGGCTTATTTGCAAAGNTTCTAAATCGCGAATACCGATGACATTACGTAA--------AA--CAGTAGACTGTTCATTTGCAGTACG----AATTCACTGATGCTTATGATG-CA-AACGAT-----TGG--TC-ATTGTAAGAATA------ATTTAANA-TATAGACT-AAA---AAAGTACGAAAA--AGACAA--GCATAATTGCATTAAAACACATTTTAT-TTAATAAATTTCAATAACTCTCGGATT--CTC--A--ATACTTGTCACGTGACCAATAACGGTGT-TG-A-GTAAACAAACGGTAGTGCATATGATCCGCTACGTGCGGTCC-TACGTAGGGAAAACGTTTTGGTAGAAAATTACAC---GAAT-AA----AACATCGCGATTTTGATGGAATTGTTGCAATAAAAGCGAATGTATATCTC-CNAAATATTTTCTTTGGTTTCTTTTCCTTTTGAAATTAGGAATTTTGTTACTTTGGATGGGAAAAGGAAAGGAATGAACGACATTGCTTTTTTGCGGAAACGTGTCCC-GGACGCAATG----GAATTTAAAAT-ACGAGTCCTCGGTCGAAAATGTGCGTCA-G-GACGC--AAGAAAAACCCAGG---GTGTTNAGTTCGGTTAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGCAGCTCTGACTACCATTTTGAGATGCTCCCATGAGCACAGGNGCTTTATAATGCTTTATACCTCATAANCGTCTCCATGATGTTTGATGAAGGAGCGGAAAGGCATCGGATGANAGCAAAGAGAAAAAATTATAACGGATTCTTTTTTCCACAATATCGGTCAAAAAGGTTANGGTCGGGGCTAAAAAAGATAGGGTCGGTCGGGATACTGGAAANAAACATATNTNTTTTTTAGGCCT
gi|1 : GGGTTTTTC-----A-TTTG-----------GACCG-TACAATAATA-GTTTA---------------------G---------------------G--------------------GGT-CCAA----------------------A-CTATTAGGC----ATCATGCTGATCTGATAA-G-C---T-TTTTATTTT-----T-TATT-GCAACCTTTTATTCAT----GAAGACAG-CT-GT---------AAAATCACAA-CCCAGAAGGGCCCT---TGCTTGCACTTTTGGGA--------ATGAGCTTGGAG------------CCAGGATCCTT-CAATATACATAGC-----AAT-----------GTATAAAAA-TGTGACCCTCATTTAGAAGACAACCTTAAAAATCTT-AAATATT---AAAAATTT-CCCAAAACATTTTCATGAAA-TGCCTCATTTATTTACATTTC----CTTATA---TTAAA----------------ACT----------------TT-----TCCGTCATGCCTGTCTAATTTGCAAAGTTTCTAAATCGCGACTATTGATTATATTACGTAC--------AT--CAGTAGACTGTTCATTTGCAATACA----AAT-CATTGATGCTTATGATG-CA-AACGAT-----TGG--TC-ATTGTAAGAATA------ATTTAAGA-TATAGACC-AAA---AAAGTACAAAAA--AGACGA--GCATAATTGCATTAAAACACATTTTAT-TTAATAAATATCAATGACTTTCGGATT--CTCCCA--ATACTTGTCATGTGATCAATTACGTTGT-TATG-GTAAACAAATGGTAGTGCATATGATTTGCTACATGCGATCT-TACATAGGGAAAATGTTTTGGTAGAAAA--AAAC---AAAT-AA----AACATCACGATTTTGATGGAATTGTTACAATAAAAGTGAATATTTATCTC-CCAAACATTTTGTTTGGTTTCTTTTTCTTTTGAAATTAGGAATTTTGTTACTTTGGATGGGAAAAGGAAAGGAATTACCGACATTGCTTTTTTGCGGAAATGTGTACC-GGATGCATTG----GAATTTAAAATAATAAGTCCTTGGTTGAAAATGTGCGTCA-GAGATGC--AGGAAAAACCCA-----GTGTTTAGTTTGGTTAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGCAGCTCTGACTACCATTTTGAGATGCTCCCATGAGCACAAAGGCTTTATAATGCTTTATACCTTATAATCGTCTCCATGATGTT-----------------------GGATGACAGCAAAGAGAAAAAATTATA--GGATTCTTTTTTTCACAATATCGGTCAAAAAGATTAGGGTCGGGGCT-AAAAAGATAGGGTC-GTTGGGATACTGGAAAGA-----ATTTTTTTTTTAGACCT
gi|10 : AAA----------------ACT----------------TT-----TACATCATGCCTTGCTTtaccctaatgtcacttgtgataatttattaa
gi|10 : ttgtaattcatttatcttaaagctcaaacccccTTATTAATAAAGATTCTAAATCGCGAATACCGATGACATTACATAA--------AAAACAGTACACTGCCCACTTGCAGTACC----AATTCACCGATGTTTATGATGACA-AA-GAT-----TGG--TC-ATTGTAAGAATA------ATTgaaaatgtgatttccccacaaggtatttcacccttacaacagtaatcatgtcccattcctttgttttaattcactcaactatgctggtctattttaccatatttattaataaagattctaaatcgcgaataccgatgacattacataaaaaacagtacactgcccacttgcagtaccaattcaccgatgtttatgatgacaaagattggtcattgtaagaataatt
gi|11 : ttgtaattcatttatcttaaagctcaaacccccaaaacttttacatcatgccttgcttgaaaatgtgatttccccacaaggtatttcacccttacaacagtaatcatgtcccattcctttgttttaattcactcaactatgctggtctattttaccatatGGATGTTTC-----A-TTT-TGGGCCT-AAGCACCTTTACTAAACTA-TTCTA---------------------A---------------------GGGTCCCAACATCAATTTTGGGGT-CCTG----------------------A-CAAGTAGACTAATATCATGCTAATATG-TCT-G-C---CATTTTATTTTATTGTTATATT-GCTCCCTTCAATT-AT----GAAGACAG-CT-GCCAGCTGTAAAAAAACACAA-TCAAGAAGAGCTCT---GGCTTCCATTTTTGG---------------------AAAAT-ACAATAT-----AT--TTGTAATATATAAAGTTATTAAAT-----------GCACAAAAT-TGTGACCCTTTTGTAATAGACTACCTT
gi|12 : ttcctaGGATTTTTC-----A-TTTTTGGGT-T-AAAGACC-CTACAATAATA-CTTTA---------------------A---------------------G--------------------GGT-CCCA----------------------AACTATCAGGC----ATCATGCTGATCTGATAA-GGC---T-TTTTATTTT-----T-TATT-GCAACCTTTTATTCAT----GAAGACAG-CT-GTCAGCTGT--AAAATCACA
gi|13 : tccctaGCAAAGCTTCTAAATCGCAAATACCAACGACATTACGTAC--------AA--CAGTAGGCTGTTCATTTGCAATACA----AA-TCACTGATGTTTACGATG-CA-AATGAT-----TGA--TC-ATTGTAAGAATACTAAAGATTTAATATTATAGA-T-AAATTTAAAGcc
gi|14 : GGTTTTTC-----A-TTTGTGGGT-T-AAGGACCACTACAATAATATTTTTA---------------------A---------------------G--------------------GGTCCCAA----------------------A-CTATTAGGC----ATCATGCTGATCTGATGA-G-----------GCTTT-----T-TATT-GCAACCTTTTATTCATAATGAAAGACAG-CT-GTCAGCTGT--AAAATCACAA-CCCaaat
gi|15 : TA---CTGAA----------------ACT----------------TTGCTGGTTTGTTTTACCTGATCCATTTGTAAAAACTTTAAATCGCAAATATGGATGATATTACCTGA--------AA--CAGTTAACTGTTCATTAGCAGTATT----TATTCACTGAAGTTGATAATG-CA-
gi|16 : ttTCTTTGCATTGTGAATTTTGGAATTTTGTTACTTTGGATTGGGAAAAAAAAGGA
gi|17 : CA-TTCCTCATTTATTTACATTTC----CTTATG---TTAAACCTCAAGATCCCATAGACG----------------TT-----TCCATTGCACCTGGCTTtactatttgcatttggggattgggcagaaacacagagcgaaggctcaggggggttcaaaccaatgacactcggcc
gi|18 : GGATTTTC-----A-TTTGTAGGT-T-GAGGACCACTACAATAATA-TTT-A---------------------A---------------------G--------------------GGT-CCCA----------------------A-CTTTTAGGC----ATCATGCTGATATGATAA-G-ggaaatgttttcccaagtatttcaccctgacatatcaataactatgtcccattacct
gi|19 : taAAA-TAAGATTCTCATGTAGAAGGCCTTCTCAA---TCAT-AA-TTTT---AAAAAGTA-CTCAAAACTGTGTCATGACA-Tgc
gi|2 : TTC-----AATTTGGGAGT-CCAAGGACCACTACAATAATA-TTTTA---------------------AGTGGCCAAACACCAATTTTTGG--------------------GGT-TCCG----------------------A-CTATTAGAC----ATCATGCTGATCTG--CA-G-CACAT-TTTTATATT-----T-TGT---CATTCTTTTATTCAT----TAACACAATCTAGNNNNNNNN--NNNNNNNNNN-NNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATGTGACTCTCATGTAGAAGGTGTCCTT---AATCAT-AA-TTTT---AAAAAGTA-CCAAAAACCATGTTGTGACA-TTTCTAATTTATTTACATTTC----CTTTTG---TGA--------------------T----------------TT-----TCC
gi|2 : gttccctagaataAAGATTTTAAATCACGAATATTGATGACAATACATAA--------AA--CAGTA--CTGCTCACTGACAGTACTTACCACTTTACTGATG---ATGA---CA-AA-GAG-----TAT--TCGATT-TAAGACAA------ATTTA----------CT-AAA---AACCTATGAAAA--AGACAAAAGTA-AATTACATTTTTACATATTTCAT-TTCATTAATTTCAATAACACTC---TTTGCTC---------TTGTTACATGACCAATACTGGTGT-TG-ACATAAACAAATTA-AGTG-----GATC---TA------GTCCATGCATAGGACAAATGTTTTGGTAGAAAATTACACCTAGAATTAACAGTAACATCGC-ATTTGGATTGAATTGTATCAATAAAACTGGATGAATAT-TC-TAAAATA------------TCTTTT------------------TTTGTTACTTTGGATCGGAAA----------TGAAAGAAATTGCTTTTTTGAAGAAATGGGTCCCGGGACAC-ATGTCTACAGTTTAAAAT-ACAGGTCCTCATTTGAAAA-GTGCATCATA-GACAC--ATGAAAtccaaggtatttcaccttacaacataaatcatgtccaattactttgttttttatttactgaattacgctggtttgttttacaaaatttataagattttaaatcacgaatattgatgacaatacataaaacagtactgctcactgacagtacttaccactttactgatgatgacaaagagtattcgatttaagacaaatttactaaaaacctatgaaaaagacaaaagtaaattacatttttacatatttcatttcattaatttcaataacactctttgctcttgttacatgaccaatactggtgttgacataaacaaattaagtggatctagtccatgcataggacaaatgttttggtagaaaattacacctagaattaacagtaacatcgcatttggattgaattgtatcaataaaactggatgaatattctaaaatatctttttttgttactttggatcggaaatgaaagaaattgcttttttgaagaaatgggtcccgggacacatgtctacagtttaaaatacaggtcctcatttgaaaagtgcatcatagacacatgaaa
gi|3 : gttccctagaatattcaatttgggagtccaaggaccactacaataatattttaagtggccaaacaccaatttttggggttccgactattagacatcatgctgatctgcagcacatttttatattttgtcattcttttattcattaacacaatctagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaatgtgactctcatgtagaaggtgtccttaatcataattttaaaaagtaccaaaaaccatgttgtgacatttctaatttatttacatttccttttgtgattttcctccaaggtatttcaccttacaacataaatcatgtccaattactttgttttttatttactgaattacgctggtttgttttacaaaatttatGGCTTTTTT-----A-TTTGTGGGT-T-AAGGACCCCTATAATAATA-TTTTA---------------------A---------------------G--------------------GGT-CCCA----------------------ACCTATTAGGC----ATCATGCTGATCTGATAAGG-C---T-TTTTATTTT-----T-TATT-GCAACCTTTTATTCGT----GAAGACAG-GT-GTCA
gi|3 : tctaAAAA-TG--ACCTTCTTTTAGAAGAAT---TTAAAAATCATCAA-TATT---AAAAAAAATCCCAAAACCTTTTCATGGCA-TTCCTCATTTATTTACATTTC----CTTATA---TTAAA----------------GCTCAATATCAACAAGAATTT-----TCCGTCATGCCTGGCTTATTTGCAAAGCTTATAAATCGCGAATACTGATTACATTACGTAC--------AA--TAGTAGACTGTTCATTTGCAAAACA----AA-TCACTGATGCTTATGATA-CATCACGATTTTGATGGAATT-GTTGCAATAA-A------AGTGAATA-TATAcaacccagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaatgaccttcttttagaagaatttaaaaatcatcaatattaaaaaaaatcccaaaaccttttcatggcattcctcatttatttacatttccttatattaaagctcaatatcaacaagaattttccgtcatgcctggcttatttgcaaagcttataaatcgcgaatactgattacattacgtacaatagtagactgttcatttgcaaaacaaatcactgatgcttatgatacatcacgattttgatggaattgttgcaataaaagtgaatatatatctcattaaaattttctttgctttcttttccttttgaaactagaaattgtgttactttggataggaaaggaatgaacgacattgcgtttttgcggaaacgtgtcccggatttaatgagatttaaactacgaatcctcagtcgaaaaagtgcgtcagga
gi|3 : tctaggcttttttatttgtgggttaaggacccctataataatattttaagggtcccaacctattaggcatcatgctgatctgataaggctttttattttttattgcaaccttttattcgtgaagacaggtgtcacaacccagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAT-GA----TACATCACGATTTTGATGGAATTGTTGCAATAAAAGTGAATATATATCTCATTAAA-ATTTTCTTTGCTTTCTTTTCCTTTTGAAACTAGAAATTGTGTTACTTTGGAT------AGGAAAGGAATGAACGACATTGCGTTTTTGCGGAAACGTGTCCC-GGATTTAATG----AGATTTAAACT-ACGAATCCTCAGTCGAAAAAGTGCGTCA-G-GAtctcattaaaattttctttgctttcttttccttttgaaactagaaattgtgttactttggataggaaaggaatgaacgacattgcgtttttgcggaaacgtgtcccggatttaatgagatttaaactacgaatcctcagtcgaaaaagtgcgtcagga
gi|4 : tctaggcttttttatttgtgggttaaggacccctataataatattttaagggtcccaacctattaggcatcatgctgatctgataaggctttttattttttattgcaaccttttattcgtgaagacaggtgtcacaacccagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaatgaccttcttttagaagaatttaaaaatcatcaatattaaaaaaaatcccaaaaccttttcatggcattcctcatttatttacatttccttatattaaagctcaatatcaacaagaattttccgtcatgcctggcttatttgcaaagcttataaatcgcgaatactgattacattacgtacaatagtagactgttcatttgcaaaacaaatcactgatgctt----------------ACT----------------TT-----TCCGTCATGCCTGGCTTATTTGCAAAGCTTCTTAATTGCGAATACAGATGACATTATGTAATTACGTATAA--CAGTA--CTGTTCATTTGCAATACA----AATTCACTGATGCTTACTATG-CA-AGCGAT-----TGG--TC-ATTGTAATAATA------ATTTACAA-TATAGACTTAAA---AAAATATGAAAA--AGACAA--ACATAATTGCGTTAAAACACATTTTATATCAA-AAATTTCAACAACTCTCAGATT--CTC--ACAACACTTGTCACGTGATCAATAACGGTGTATA-C-GTAAACAAATGGTAGTGCATATGATCCGCTACATGCAGTTC-TATGTTGGGAAAACACTTTGGTGGAAAATAACA---------AA----AACATCACGATTTTGATGGAATTGTTGCAATAAAAGCAAATGTATATCTC-C-AAATATTTTCTTTGGTTTCTTTTCCTTTTGAAAGTAGGAATTTTGTTCATTTGGATGGGAAAAGGAAAGGAATAAACGGCACTGCTTTTTTGCAGAAACGTGTCCA-G---------------------------GAGTCCTTGGTCG---ATCTGCATCA-GTGACGC--AAGAAAAACTCAGGACTGTGTTCAGTTTGAT
gi|5 : caggTCTTTCCCTTTTGAAATTAGGAATTTTGTTACTTTGGATGGTAAAAGGAAAGGAATGAACTACATTGCTTTTTTGCGGAAACGTGTACC-GAAAGTAATG----GAATTAAAAAT-ACAAGTCCTCGGTCAAAAATGT---T-----GACGCAAAAAAAAAAACCAGG-----GCTGCGTTCAGTTAAAC
gi|5 : GACTACCATTTTGAGATGTTCCCATGAGCACAGGCGCTTTATAATGCTTTATACCTCATAAGCGTCTCCATGATGTTTGATGAAGGAGCGGAAAGGCATCGAATGAAAGCAAAGAGAAAAAATT-TAACAAATT-TTTTTTCCACAA--------AAAAAGGTTATGGTTGGGGCTAAAAAAAATAGGGTTGGTCAGAATACTGGAAACAAACATATATATTTTTTAGGCCTgtttgataacgttggctaacatatgtttctgtacactgactctaactcataatagcacgcagttgcgataatgttagggcaccaggcattaaacctgtttgtcggtgaggaacacatatagactaccattttgagatgttcccatgagcacaggcgctttataatgctttatacctcataagcgtctccatgatgtttgatgaaggagcggaaaggcatcgaatgaaagcaaagagaaaaaatttaacaaattttttttccacaaaaaaaggttatggttggggctaaaaaaaatagggttggtcagaatactggaaacaaacatatatattttttaggcctgaatggtatgggaatttaaaactatttccttttcgtaattattaacttt
gi|6 : tctttcccttttgaaattaggaattttgttactttggatggtaaaaggaaaggaatgaactacattgcttttttgcggaaacgtgtaccgaaagtaatggaattaaaaatacaagtcctcggtcaaaaatgttgacgcaaaaaaaaaaaccagggctgcgttcagttaaacgtttgataacgttggctaacatatgtttctgtacactgactctaactcataatagcacgcagttgcgataatgttagggcaccaggcattaaacctgtttgtcggtgaggaacacatataGGTTTTTC-----A-TTTGTGGGT-T-AAGGACCACTACAATAATATTTTTA---------------------A---------------------G--------------------GGTCCCAA----------------------A-CTATTAGGC----ATCATGCTGATCTGATGA-G-----------GCTTT-----T-TATT-GCAACCTTTTATTCATAATGAAAGACAG-CT-GTCAGCTGT--AAAATCACAA-CCCAgaatggtatgggaatttaaaactatttccttttcgtaattattaacttt
gi|6 : AAAA-GGTGACCTTCTTTTAGAAGACG---TTAAAAATCATCAA-TATTGAAAAAAAGT--CCCAAAACCTTTGAATGAC---TCCTCATTTATTTACATTCC----ATTATA---ATAAA----------------GCT----------------tannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaaggtgaccttcttttagaagacgttaaaaatcatcaatattgaaaaaaagtcccaaaacctttgaatgactcctcatttatttacattccattataataaagctcaatatccataaga
gi|7 : ggtttttcatttgtgggttaaggaccactacaataatatttttaagggtcccaaactattaggcatcatgctgatctgatgaggctttttattgcaaccttttattcataatgaaagacagctgtcagctgtaaaatcacaacccatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGGTTTTCCTTAGGA-TTTG-GGGT-TCAAGAACCGCTCCAATAATA-TTTTAACTGTCCCCAAAACCAATTTTA---------------------G--------------------GGT-CCGG----------------------A-CTATTAGAC----ACCATTCTGATCTG-CAGTG-C---C-TTTTTTATT-----T-TATTGGCATCATTTTATTCAT----GAA-------------------------CACAA-CCCAGCAGGGTTATTGCTGCTTGCATATTTGGAAATGACTCGATGAGGTTGAAAAAAcaatatccataaga
gi|7 : aAGAA-TGTGATTCTCATGCAGAAGGTTTCCTTAA---TCAT-AA-TTTT---GAAAAATA-CCCAA-----TACCACGACAGTTCTTTTTCTGTTT-TATTTaaatgctttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaatgtgattctcatgcagaaggtttccttaatcataattttgaaaaatacccaataccacgacagttctttttctgttttatttgtaatatattttttttataact
gi|8 : agggttttccttaggatttggggttcaagaaccgctccaataatattttaactgtccccaaaaccaattttagggtccggactattagacaccattctgatctgcagtgccttttttattttattggcatcattttattcatgaacacaacccagcagggttattgctgcttgcatatttggaaatgactcgatgaggttgaaaaaaaaatgctttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGATTTTTC-----A-TTTGGGGGT-CCAAGGACCCATACAATAATG-TTTTA---------------------A---------------------G--------------------GGT-TCAAATACCAATTTTGGTGGTCACCGA-CTATTAGAC----ATCATGCTGATCTgtaatatattttttttataact
gi|8 : tatatgttattatgtacagggttttccctaCACAAACCCAGCAGGGTTCT---TGCTTGCATATTTGGGA--------ATGAGGATGGAAAAATGACATTACCCACGGTCCTT-CAACATACATAAC-----AATATGTGTTTTAAGTATAAAAA-TAAGATTCTCATGTAGAAGGCCTTCTC---AATCAT-AA-TTTT---AAAAAGTA-CTCAAAACTGTGTCATGACA-TTTGTAATTCATTT--ATCTTAAAGCTCAAACCCCCAAA----------------ACT----------------TT-----TACATCATGCCTtcatgaacacaaacccagcagggttcttgcttgcatatttgggaatgaggatggaaaaatgacattacccacggtccttcaacatacataacaatatgtgttttaagtataaaaataagattctcatgtagaaggccttctcaatcataattttaaaaagtactcaaaactgtgtcatgacatttgtaattcatttatcttaaagctcaaacccccaaaacttttacatcatgcct
gi|9 : tatatgttattatgtacagggttttccctaggatttttcatttgggggtccaaggacccatacaataatgttttaagggttcaaataccaattttggtggtcaccgactattagacatcatgctgatcttcatgaaA----------------ACT----------------TC-----TTTG----GTCTG--TTACATGTAAAGATTCCAAATCGCGAATATAGATGACATTAAGTAA--------AG--CAGT-GGCTTCTCGTTTACAGTATG----AATTCACAGACG-TTATT-TG--A-AATAAA-----TGA--TC-ATTGTAACAGTA------ATTTATGT-TACATACT-AAT---TAAGTACAAAAATTACAAAA--GTA-AACTACATTAAAACATATTTTAG-TTGATAAA-TTCAG----TCTTGGG-----TC--A--AT--T---------ACCCATAACAGTGT-TG-AGGTAAACAAACACTAGTGCATATGATTCAATATGTCCGATCCAGACATGGACAAAACA-TTTGGT------TTAC----------AA----AACATTGCGAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 111 8888888888888888888888888888888888888888888888888888888888888888 3333333333333333333333 2222222 11111 2222 111 33333333333333333333333333333333333333 1 9999999999999999999 222 1 111 1111 111 33333333333333333333333333333333333 11111 11111111 11111 11111 111111 1111 111 11 11 1 1 1111111 444444444 1 333 11 1 5555555555555555 111 222222222222 222 11 333333 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 77777777777777777777777 1 11 1 33333333 1 1 22222
lowQualScore : 00000 4 5 222 8 8 3333333333333333333333333333333333333333333333333333333333333333 8 1 5555555555555555555555 8 8888 7 8 1111111 22222 5 5 0 1111 5 5 0 66 5 1 444 1 66666666666666666666666666666666666666 5 7 3333333333333333333 5 3 0 11 6 111 1 5 1 000 77 88 1 5 5 4444 000 55555555555555555555555555555555555 11111 3 1 5 88888888 66 888 88888 3 8 5 5 8 44444 77 5 0 1 666666 6666 8 444 33 33 5 0 0 3 3 77 7777777 000000000 3 0 00 0 000 5555 2 999 00 2 0 5 2 1 0 7 7 66 0000000000000000 0 2 2 888 7 3 2 2 1 1 6 8 3 888888888888 1 0 8 0 6 1 222 33 1 555555 1 0 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 1 55555555555555555555555 1 5 88 5 44444444 1 5 5 1 77777 1 1
lowQualScore : ..... . . ... . . ................................................................ . . ...................... . .... . . ....... ..... . . . .... . . . .. . . ... . ...................................... . . ................... . . . .. . ... . . . ... .. .. . . . .... ... ................................... ..... . . . ........ .. ... ..... . . . . . ..... .. . . . ...... .... . ... .. .. . . . . . .. ....... ......... . . .. . ... .... . ... .. . . . . . . . . .. ................ . . . ... . . . . . . . . . ............ . . . . . . ... .. . ...... . . ................................................................................................................... . . ....................... . . .. . ........ . . . . ..... . .
lowQualScore : 00000 0 6 444 9 0 0000000000000000000000000000000000000000000000000000000000000000 0 0 5555555555555555555555 0 5555 3 9 4444444 55555 0 0 5 2222 0 0 8 99 7 0 000 0 55555555555555555555555555555555555555 2 8 0000000000000000000 0 6 8 22 5 666 4 7 0 000 44 33 0 0 0 2222 000 33333333333333333333333333333333333 11111 0 0 4 11111111 99 888 00000 2 5 0 0 9 33333 99 7 7 7 444444 8888 0 000 88 88 5 0 8 2 2 88 5555555 222222222 2 2 55 0 888 8888 5 222 88 5 2 5 0 2 2 0 0 88 2222222222222222 2 0 5 888 0 2 5 5 0 5 7 0 2 666666666666 0 6 0 8 0 4 222 88 2 000000 0 7 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 55555555555555555555555 0 5 00 0 55555555 0 5 0 0 00000 0 0
consensus : GGGTTTTTC-----A-TTTGTGGGT-T-AAGGACCGCTACAATAATA-TTTTA---------------------A---------------------G--------------------GGT-CCNA----------------------A-CTATTAGGC----ATCATGCTGATCTGATAA-G-C---T-TTTTATTTT-----T-TATT-GCAACCTTTTATTCAT----GAAGACAG-CT-GTCAGCTGTAAAAT--CACAA-CCCAGNAGGGCTCT---TGCTTGCATNTTTGGGA--------ATGAGGTTGGAAAAATGACANTACCCANGATCCTTGCAATATACATAGCTATTAAATATGTGTTTTAAGTATAAAAA-TGTGACCCTCATGTAGAAGGCNTCCTTAAAAATCAT-AA-TNTT---AAAAAGTA-CCCAAAACCGTNTCATGACA-TTCCTCATTTATTTACATTTC----CTTATA---TTAAA----------------ACT----------------TT-----TCCGTCATGCCTGGCTTATTTGCAAAGNTTCTAAATCGCGAATACCGATGACATTACGTAA--------AA--CAGTAGACTGTTCATTTGCAGTACG----AATTCACTGATGCTTATGATG-CA-AACGAT-----TGG--TC-ATTGTAAGAATA------ATTTAANA-TATAGACT-AAA---AAAGTACGAAAA--AGACAA--GCATAATTGCATTAAAACACATTTTAT-TTAATAAATTTCAATAACTCTCGGATT--CTC--A--ATACTTGTCACGTGACCAATAACGGTGT-TG-A-GTAAACAAACGGTAGTGCATATGATCCGCTACGTGCGGTCCATACGTAGGGAAAACGTTTTGGTAGAAAATTACAC---GAAT-AA----AACATCGCGATTTTGATGGAATTGTTGCAATAAAAGCGAATGTATATCTC-CNAAATATTTTCTTTGGTTTCTTTTCCTTTTGAAATTAGGAATTTTGTTACTTTGGATGGGAAAAGGAAAGGAATGAACGACATTGCTTTTTTGCGGAAACGTGTCCC-GGACGCAATG----GAATTTAAAAT-ACGAGTCCTCGGTCGAAAATGTGCGTCA-G-GACGC--AAGAAAAACCCAGG---GTGTTNAGTTCGGTTAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGCAGCTCTGACTACCATTTTGAGATGCTCCCATGAGCACAGGNGCTTTATAATGCTTTATACCTCATAANCGTCTCCATGATGTTTGATGAAGGAGCGGAAAGGCATCGGATGANAGCAAAGAGAAAAAATTATAACGGATTCTTTTTTCCACAATATCGGTCAAAAAGGTTANGGTCGGGGCTAAAAAAGATAGGGTCGGTCGGGATACTGGAAANAAACATATNTNTTTTTTAGGCCT
Reference ( family-1262 ) : GGGTTTTTC-----A-TTTGTGGGT-T-AAGGACCGCTACAATAATA-TTTTA---------------------A---------------------G--------------------GGT-CCNA----------------------A-CTATTAGGC----ATCATGCTGATCTGATAA-G-C---T-TTTTATTTT-----T-TATT-GCAACCTTTTATTCAT----GAAGACAG-CT-GTCAGCTGTAAAAT--CACAA-CCCAGNAGGGCTCT---TGCTTGCATNTTTGGGA--------ATGAGGTTGGAAAAATGACANTACCCANGATCCTTGCAATATACATAGCTATTAAATATGTGTTTTAAGTATAAAAA-TGTGACCCTCATGTAGAAGGCNTCCTTAAAAATCAT-AA-TNTT---AAAAAGTA-CCCAAAACCGTNTCATGACA-TTCCTCATTTATTTACATTTC----CTTATA---TTAAA----------------ACT----------------TT-----TCCGTCATGCCTGGCTTATTTGCAAAGNTTCTAAATCGCGAATACCGATGACATTACGTAA--------AA--CAGTAGACTGTTCATTTGCAGTACG----AATTCACTGATGCTTATGATG-CA-AACGAT-----TGG--TC-ATTGTAAGAATA------ATTTAANA-TATAGACT-AAA---AAAGTACGAAAA--AGACAA--GCATAATTGCATTAAAACACATTTTAT-TTAATAAATTTCAATAACTCTCGGATT--CTC--A--ATACTTGTCACGTGACCAATAACGGTGT-TG-A-GTAAACAAACGGTAGTGCATATGATCCGCTACGTGCGGTCCATACGTAGGGAAAACGTTTTGGTAGAAAATTACAC---GAAT-AA----AACATCGCGATTTTGATGGAATTGTTGCAATAAAAGCGAATGTATATCTC-CNAAATATTTTCTTTGGTTTCTTTTCCTTTTGAAATTAGGAATTTTGTTACTTTGGATGGGAAAAGGAAAGGAATGAACGACATTGCTTTTTTGCGGAAACGTGTCCC-GGACGCAATG----GAATTTAAAAT-ACGAGTCCTCGGTCGAAAATGTGCGTCA-G-GACGC--AAGAAAAACCCAGG---GTGTTNAGTTCGGTTAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGCAGCTCTGACTACCATTTTGAGATGCTCCCATGAGCACAGGNGCTTTATAATGCTTTATACCTCATAANCGTCTCCATGATGTTTGATGAAGGAGCGGAAAGGCATCGGATGANAGCAAAGAGAAAAAATTATAACGGATTCTTTTTTCCACAATATCGGTCAAAAAGGTTANGGTCGGGGCTAAAAAAGATAGGGTCGGTCGGGATACTGGAAANAAACATATNTNTTTTTTAGGCCT
gi|1 : GGGTTTTTC-----A-TTTG-----------GACCG-TACAATAATA-GTTTA---------------------G---------------------G--------------------GGT-CCAA----------------------A-CTATTAGGC----ATCATGCTGATCTGATAA-G-C---T-TTTTATTTT-----T-TATT-GCAACCTTTTATTCAT----GAAGACAG-CT-GT-------AAAAT--CACAA-CCCAGAAGGGCCCT---TGCTTGCACTTTTGGGA--------ATGAGCTTGGAG------------CCAGGATCCTT-CAATATACATAGC-----AAT-----------GTATAAAAA-TGTGACCCTCATTTAGAAGACAACCTTAAAAATCTT-AAATATT---AAAAATTT-CCCAAAACATTTTCATGAAA-TGCCTCATTTATTTACATTTC----CTTATA---TTAAA----------------ACT----------------TT-----TCCGTCATGCCTGTCTAATTTGCAAAGTTTCTAAATCGCGACTATTGATTATATTACGTAC--------AT--CAGTAGACTGTTCATTTGCAATACA----AAT-CATTGATGCTTATGATG-CA-AACGAT-----TGG--TC-ATTGTAAGAATA------ATTTAAGA-TATAGACC-AAA---AAAGTACAAAAA--AGACGA--GCATAATTGCATTAAAACACATTTTAT-TTAATAAATATCAATGACTTTCGGATT--CTCCCA--ATACTTGTCATGTGATCAATTACGTTGT-TATG-GTAAACAAATGGTAGTGCATATGATTTGCTACATGCGATCT-TACATAGGGAAAATGTTTTGGTAGAAAA--AAAC---AAAT-AA----AACATCACGATTTTGATGGAATTGTTACAATAAAAGTGAATATTTATCTC-CCAAACATTTTGTTTGGTTTCTTTTTCTTTTGAAATTAGGAATTTTGTTACTTTGGATGGGAAAAGGAAAGGAATTACCGACATTGCTTTTTTGCGGAAATGTGTACC-GGATGCATTG----GAATTTAAAATAATAAGTCCTTGGTTGAAAATGTGCGTCA-GAGATGC--AGGAAAAACCCA-----GTGTTTAGTTTGGTTAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGCAGCTCTGACTACCATTTTGAGATGCTCCCATGAGCACAAAGGCTTTATAATGCTTTATACCTTATAATCGTCTCCATGATGTT-----------------------GGATGACAGCAAAGAGAAAAAATTATA--GGATTCTTTTTTTCACAATATCGGTCAAAAAGATTAGGGTCGGGGCT-AAAAAGATAGGGTC-GTTGGGATACTGGAAAGA-----ATTTTTTTTTTAGACCT
gi|10 : AAA----------------ACT----------------TT-----TACATCATGCCTTGCTTtaccctaatgtcacttgtgataatttattaa
gi|10 : ttgtaattcatttatcttaaagctcaaacccccTTATTAATAAAGATTCTAAATCGCGAATACCGATGACATTACATAA--------AAAACAGTACACTGCCCACTTGCAGTACC----AATTCACCGATGTTTATGATGACA-AA-GAT-----TGG--TC-ATTGTAAGAATA------ATTgaaaatgtgatttccccacaaggtatttcacccttacaacagtaatcatgtcccattcctttgttttaattcactcaactatgctggtctattttaccatatttattaataaagattctaaatcgcgaataccgatgacattacataaaaaacagtacactgcccacttgcagtaccaattcaccgatgtttatgatgacaaagattggtcattgtaagaataatt
gi|11 : ttgtaattcatttatcttaaagctcaaacccccaaaacttttacatcatgccttgcttgaaaatgtgatttccccacaaggtatttcacccttacaacagtaatcatgtcccattcctttgttttaattcactcaactatgctggtctattttaccatatGGATGTTTC-----A-TTT-TGGGCCT-AAGCACCTTTACTAAACTA-TTCTA---------------------A---------------------GGGTCCCAACATCAATTTTGGGGT-CCTG----------------------A-CAAGTAGACTAATATCATGCTAATATG-TCT-G-C---CATTTTATTTTATTGTTATATT-GCTCCCTTCAATT-AT----GAAGACAG-CT-GCCAGCTGTAAAAAAACACAA-TCAAGAAGAGCTCT---GGCTTCCATTTTTGG---------------------AAAAT-ACAATAT-----AT--TTGTAATATATAAAGTTATTAAAT-----------GCACAAAAT-TGTGACCCTTTTGTAATAGACTACCTT
gi|12 : ttcctaGGATTTTTC-----A-TTTTTGGGT-T-AAAGACC-CTACAATAATA-CTTTA---------------------A---------------------G--------------------GGT-CCCA----------------------AACTATCAGGC----ATCATGCTGATCTGATAA-GGC---T-TTTTATTTT-----T-TATT-GCAACCTTTTATTCAT----GAAGACAG-CT-GTCAGCTGTAAAAT--CACA
gi|13 : tccctaGCAAAGCTTCTAAATCGCAAATACCAACGACATTACGTAC--------AA--CAGTAGGCTGTTCATTTGCAATACA----AA-TCACTGATGTTTACGATG-CA-AATGAT-----TGA--TC-ATTGTAAGAATACTAAAGATTTAATATTATAGA-T-AAATTTAAAGcc
gi|14 : GGTTTTTC-----A-TTTGTGGGT-T-AAGGACCACTACAATAATATTTTTA---------------------A---------------------G--------------------GGTCCCAA----------------------A-CTATTAGGC----ATCATGCTGATCTGATGA-G-----------GCTTT-----T-TATT-GCAACCTTTTATTCATAATGAAAGACAG-CT-GTCAGCTGTAAAAT--CACAA-CCCaaat
gi|15 : TA---CTGAA----------------ACT----------------TTGCTGGTTTGTTTTACCTGATCCATTTGTAAAAACTTTAAATCGCAAATATGGATGATATTACCTGA--------AA--CAGTTAACTGTTCATTAGCAGTATT----TATTCACTGAAGTTGATAATG-CA-
gi|16 : ttTCTTTGCATTGTGAATTTTGGAATTTTGTTACTTTGGATTGGGAAAAAAAAGGA
gi|17 : CA-TTCCTCATTTATTTACATTTC----CTTATG---TTAAACCTCAAGATCCCATAGACG----------------TT-----TCCATTGCACCTGGCTTtactatttgcatttggggattgggcagaaacacagagcgaaggctcaggggggttcaaaccaatgacactcggcc
gi|18 : GGATTTTC-----A-TTTGTAGGT-T-GAGGACCACTACAATAATA-TTT-A---------------------A---------------------G--------------------GGT-CCCA----------------------A-CTTTTAGGC----ATCATGCTGATATGATAA-G-ggaaatgttttcccaagtatttcaccctgacatatcaataactatgtcccattacct
gi|19 : taAAA-TAAGATTCTCATGTAGAAGGCCTTCTCAA---TCAT-AA-TTTT---AAAAAGTA-CTCAAAACTGTGTCATGACA-Tgc
gi|2 : TTC-----AATTTGGGAGT-CCAAGGACCACTACAATAATA-TTTTA---------------------AGTGGCCAAACACCAATTTTTGG--------------------GGT-TCCG----------------------A-CTATTAGAC----ATCATGCTGATCTG--CA-G-CACAT-TTTTATATT-----T-TGT---CATTCTTTTATTCAT----TAACACAATCTAGNNNNNNNNNNNNN--NNNNN-NNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATGTGACTCTCATGTAGAAGGTGTCCTT---AATCAT-AA-TTTT---AAAAAGTA-CCAAAAACCATGTTGTGACA-TTTCTAATTTATTTACATTTC----CTTTTG---TGA--------------------T----------------TT-----TCC
gi|2 : gttccctagaataAAGATTTTAAATCACGAATATTGATGACAATACATAA--------AA--CAGTA--CTGCTCACTGACAGTACTTACCACTTTACTGATG---ATGA---CA-AA-GAG-----TAT--TCGATT-TAAGACAA------ATTTA----------CT-AAA---AACCTATGAAAA--AGACAAAAGTA-AATTACATTTTTACATATTTCAT-TTCATTAATTTCAATAACACTC---TTTGCTC---------TTGTTACATGACCAATACTGGTGT-TG-ACATAAACAAATTA-AGTG-----GATC---TA------GTCCATGCATAGGACAAATGTTTTGGTAGAAAATTACACCTAGAATTAACAGTAACATCGC-ATTTGGATTGAATTGTATCAATAAAACTGGATGAATAT-TC-TAAAATA------------TCTTTT------------------TTTGTTACTTTGGATCGGAAA----------TGAAAGAAATTGCTTTTTTGAAGAAATGGGTCCCGGGACAC-ATGTCTACAGTTTAAAAT-ACAGGTCCTCATTTGAAAA-GTGCATCATA-GACAC--ATGAAAtccaaggtatttcaccttacaacataaatcatgtccaattactttgttttttatttactgaattacgctggtttgttttacaaaatttataagattttaaatcacgaatattgatgacaatacataaaacagtactgctcactgacagtacttaccactttactgatgatgacaaagagtattcgatttaagacaaatttactaaaaacctatgaaaaagacaaaagtaaattacatttttacatatttcatttcattaatttcaataacactctttgctcttgttacatgaccaatactggtgttgacataaacaaattaagtggatctagtccatgcataggacaaatgttttggtagaaaattacacctagaattaacagtaacatcgcatttggattgaattgtatcaataaaactggatgaatattctaaaatatctttttttgttactttggatcggaaatgaaagaaattgcttttttgaagaaatgggtcccgggacacatgtctacagtttaaaatacaggtcctcatttgaaaagtgcatcatagacacatgaaa
gi|3 : gttccctagaatattcaatttgggagtccaaggaccactacaataatattttaagtggccaaacaccaatttttggggttccgactattagacatcatgctgatctgcagcacatttttatattttgtcattcttttattcattaacacaatctagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaatgtgactctcatgtagaaggtgtccttaatcataattttaaaaagtaccaaaaaccatgttgtgacatttctaatttatttacatttccttttgtgattttcctccaaggtatttcaccttacaacataaatcatgtccaattactttgttttttatttactgaattacgctggtttgttttacaaaatttatGGCTTTTTT-----A-TTTGTGGGT-T-AAGGACCCCTATAATAATA-TTTTA---------------------A---------------------G--------------------GGT-CCCA----------------------ACCTATTAGGC----ATCATGCTGATCTGATAAGG-C---T-TTTTATTTT-----T-TATT-GCAACCTTTTATTCGT----GAAGACAG-GT-GTCA
gi|3 : tctaAAAA-TG--ACCTTCTTTTAGAAGA-AT--TTAAAAATCATCAA-TATT---AAAAAAAATCCCAAAACCTTTTCATGGCA-TTCCTCATTTATTTACATTTC----CTTATA---TTAAA----------------GCTCAATATCAACAAGAATTT-----TCCGTCATGCCTGGCTTATTTGCAAAGCTTATAAATCGCGAATACTGATTACATTACGTAC--------AA--TAGTAGACTGTTCATTTGCAAAACA----AA-TCACTGATGCTTATGATA-CATCACGATTTTGATGGAATT-GTTGCAATAA-A------AGTGAATA-TATAcaacccagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaatgaccttcttttagaagaatttaaaaatcatcaatattaaaaaaaatcccaaaaccttttcatggcattcctcatttatttacatttccttatattaaagctcaatatcaacaagaattttccgtcatgcctggcttatttgcaaagcttataaatcgcgaatactgattacattacgtacaatagtagactgttcatttgcaaaacaaatcactgatgcttatgatacatcacgattttgatggaattgttgcaataaaagtgaatatatatctcattaaaattttctttgctttcttttccttttgaaactagaaattgtgttactttggataggaaaggaatgaacgacattgcgtttttgcggaaacgtgtcccggatttaatgagatttaaactacgaatcctcagtcgaaaaagtgcgtcagga
gi|3 : tctaggcttttttatttgtgggttaaggacccctataataatattttaagggtcccaacctattaggcatcatgctgatctgataaggctttttattttttattgcaaccttttattcgtgaagacaggtgtcacaacccagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAT-GA----TACATCACGATTTTGATGGAATTGTTGCAATAAAAGTGAATATATATCTCATTAAA-ATTTTCTTTGCTTTCTTTTCCTTTTGAAACTAGAAATTGTGTTACTTTGGAT------AGGAAAGGAATGAACGACATTGCGTTTTTGCGGAAACGTGTCCC-GGATTTAATG----AGATTTAAACT-ACGAATCCTCAGTCGAAAAAGTGCGTCA-G-GAtctcattaaaattttctttgctttcttttccttttgaaactagaaattgtgttactttggataggaaaggaatgaacgacattgcgtttttgcggaaacgtgtcccggatttaatgagatttaaactacgaatcctcagtcgaaaaagtgcgtcagga
gi|4 : tctaggcttttttatttgtgggttaaggacccctataataatattttaagggtcccaacctattaggcatcatgctgatctgataaggctttttattttttattgcaaccttttattcgtgaagacaggtgtcacaacccagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaatgaccttcttttagaagaatttaaaaatcatcaatattaaaaaaaatcccaaaaccttttcatggcattcctcatttatttacatttccttatattaaagctcaatatcaacaagaattttccgtcatgcctggcttatttgcaaagcttataaatcgcgaatactgattacattacgtacaatagtagactgttcatttgcaaaacaaatcactgatgctt----------------ACT----------------TT-----TCCGTCATGCCTGGCTTATTTGCAAAGCTTCTTAATTGCGAATACAGATGACATTATGTAATTACGTATAA--CAGTA--CTGTTCATTTGCAATACA----AATTCACTGATGCTTACTATG-CA-AGCGAT-----TGG--TC-ATTGTAATAATA------ATTTACAA-TATAGACTTAAA---AAAATATGAAAA--AGACAA--ACATAATTGCGTTAAAACACATTTTATATCAA-AAATTTCAACAACTCTCAGATT--CTC--ACAACACTTGTCACGTGATCAATAACGGTGTATA-C-GTAAACAAATGGTAGTGCATATGATCCGCTACATGCAGTTC-TATGTTGGGAAAACACTTTGGTGGAAAATAACA---------AA----AACATCACGATTTTGATGGAATTGTTGCAATAAAAGCAAATGTATATCTC-C-AAATATTTTCTTTGGTTTCTTTTCCTTTTGAAAGTAGGAATTTTGTTCATTTGGATGGGAAAAGGAAAGGAATAAACGGCACTGCTTTTTTGCAGAAACGTGTCCA-G---------------------------GAGTCCTTGGTCG---ATCTGCATCA-GTGACGC--AAGAAAAACTCAGGACTGTGTTCAGTTTGAT
gi|5 : caggTCTTTCCCTTTTGAAATTAGGAATTTTGTTACTTTGGATGGTAAAAGGAAAGGAATGAACTACATTGCTTTTTTGCGGAAACGTGTACC-GAAAGTAATG----GAATTAAAAAT-ACAAGTCCTCGGTCAAAAATGT---T-----GACGCAAAAAAAAAAACCAGG-----GCTGCGTTCAGTTAAAC
gi|5 : GACTACCATTTTGAGATGTTCCCATGAGCACAGGCGCTTTATAATGCTTTATACCTCATAAGCGTCTCCATGATGTTTGATGAAGGAGCGGAAAGGCATCGAATGAAAGCAAAGAGAAAAAATT-TAACAAATT-TTTTTTCCACAA--------AAAAAGGTTATGGTTGGGGCTAAAAAAAATAGGGTTGGTCAGAATACTGGAAACAAACATATATATTTTTTAGGCCTgtttgataacgttggctaacatatgtttctgtacactgactctaactcataatagcacgcagttgcgataatgttagggcaccaggcattaaacctgtttgtcggtgaggaacacatatagactaccattttgagatgttcccatgagcacaggcgctttataatgctttatacctcataagcgtctccatgatgtttgatgaaggagcggaaaggcatcgaatgaaagcaaagagaaaaaatttaacaaattttttttccacaaaaaaaggttatggttggggctaaaaaaaatagggttggtcagaatactggaaacaaacatatatattttttaggcctgaatggtatgggaatttaaaactatttccttttcgtaattattaacttt
gi|6 : tctttcccttttgaaattaggaattttgttactttggatggtaaaaggaaaggaatgaactacattgcttttttgcggaaacgtgtaccgaaagtaatggaattaaaaatacaagtcctcggtcaaaaatgttgacgcaaaaaaaaaaaccagggctgcgttcagttaaacgtttgataacgttggctaacatatgtttctgtacactgactctaactcataatagcacgcagttgcgataatgttagggcaccaggcattaaacctgtttgtcggtgaggaacacatataGGTTTTTC-----A-TTTGTGGGT-T-AAGGACCACTACAATAATATTTTTA---------------------A---------------------G--------------------GGTCCCAA----------------------A-CTATTAGGC----ATCATGCTGATCTGATGA-G-----------GCTTT-----T-TATT-GCAACCTTTTATTCATAATGAAAGACAG-CT-GTCAGCTGTAAAAT--CACAA-CCCAgaatggtatgggaatttaaaactatttccttttcgtaattattaacttt
gi|6 : AAAA-GGTGACCTTCTTTTAGAAGACGT---TAAAAATCATCAA-TATTGAAAAAAAGT--CCCAAAACCTTTGAATGAC---TCCTCATTTATTTACATTCC----ATTATA---ATAAA----------------GCT----------------tannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaaggtgaccttcttttagaagacgttaaaaatcatcaatattgaaaaaaagtcccaaaacctttgaatgactcctcatttatttacattccattataataaagctcaatatccataaga
gi|7 : ggtttttcatttgtgggttaaggaccactacaataatatttttaagggtcccaaactattaggcatcatgctgatctgatgaggctttttattgcaaccttttattcataatgaaagacagctgtcagctgtaaaatcacaacccatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGGTTTTCCTTAGGA-TTTG-GGGT-TCAAGAACCGCTCCAATAATA-TTTTAACTGTCCCCAAAACCAATTTTA---------------------G--------------------GGT-CCGG----------------------A-CTATTAGAC----ACCATTCTGATCTG-CAGTG-C---C-TTTTTTATT-----T-TATTGGCATCATTTTATTCAT----GAA-------------------------CACAA-CCCAGCAGGGTTATTGCTGCTTGCATATTTGGAAATGACTCGATGAGGTTGAAAAAAcaatatccataaga
gi|7 : aAGAA-TGTGATTCTCATGCAGAAGGTTTCCTT---AATCAT-AA-TTTT---GAAAAATA-CCCAA-----TACCACGACAGTTCTTTTTCTGTTT-TATTTaaatgctttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaatgtgattctcatgcagaaggtttccttaatcataattttgaaaaatacccaataccacgacagttctttttctgttttatttgtaatatattttttttataact
gi|8 : agggttttccttaggatttggggttcaagaaccgctccaataatattttaactgtccccaaaaccaattttagggtccggactattagacaccattctgatctgcagtgccttttttattttattggcatcattttattcatgaacacaacccagcagggttattgctgcttgcatatttggaaatgactcgatgaggttgaaaaaaaaatgctttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGATTTTTC-----A-TTTGGGGGT-CCAAGGACCCATACAATAATG-TTTTA---------------------A---------------------G--------------------GGT-TCAAATACCAATTTTGGTGGTCACCGA-CTATTAGAC----ATCATGCTGATCTgtaatatattttttttataact
gi|8 : tatatgttattatgtacagggttttcccta--CACAAACCCAGCAGGGTTCT---TGCTTGCATATTTGGGA--------ATGAGGATGGAAAAATGACATTACCCACGGTCCTT-CAACATACATAAC-----AATATGTGTTTTAAGTATAAAAA-TAAGATTCTCATGTAGAAGGCCTTCTC---AATCAT-AA-TTTT---AAAAAGTA-CTCAAAACTGTGTCATGACA-TTTGTAATTCATTT--ATCTTAAAGCTCAAACCCCCAAA----------------ACT----------------TT-----TACATCATGCCTtcatgaacacaaacccagcagggttcttgcttgcatatttgggaatgaggatggaaaaatgacattacccacggtccttcaacatacataacaatatgtgttttaagtataaaaataagattctcatgtagaaggccttctcaatcataattttaaaaagtactcaaaactgtgtcatgacatttgtaattcatttatcttaaagctcaaacccccaaaacttttacatcatgcct
gi|9 : tatatgttattatgtacagggttttccctaggatttttcatttgggggtccaaggacccatacaataatgttttaagggttcaaataccaattttggtggtcaccgactattagacatcatgctgatcttcatgaaA----------------ACT----------------TC-----TTTG----GTCTG--TTACATGTAAAGATTCCAAATCGCGAATATAGATGACATTAAGTAA--------AG--CAGT-GGCTTCTCGTTTACAGTATG----AATTCACAGACG-TTATT-TG--A-AATAAA-----TGA--TC-ATTGTAACAGTA------ATTTATGT-TACATACT-AAT---TAAGTACAAAAATTACAAAA--GTA-AACTACATTAAAACATATTTTAG-TTGATAAA-TTCAG----TCTTGGG-----TC--A--AT--T---------ACCCATAACAGTGT-TG-AGGTAAACAAACACTAGTGCATATGATTCAATATGTCCGATCCAGACATGGACAAAACA-TTTGGT------TTAC----------AA----AACATTGCGAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 111 8888888888888888888888888888888888888888888888888888888888888888 3333333333333333333333 2222222 11111 2222 111 33333333333333333333333333333333333333 1 9999999999999999999 222 1 111 1111 111 33333333333333333333333333333333333 11111 11111111 11111 11111 111111 1111 111 11 11 1 1 1111111 444444444 1 333 11 1 5555555555555555 111 222222222222 222 11 333333 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 77777777777777777777777 1 11 1 33333333 1 1 22222
lowQualScore : 00000 4 5 222 8 8 3333333333333333333333333333333333333333333333333333333333333333 8 1 5555555555555555555555 8 8888 7 8 1111111 22222 5 5 0 1111 5 5 0 66 5 1 444 1 66666666666666666666666666666666666666 5 7 3333333333333333333 5 3 0 11 6 111 1 5 1 000 77 88 1 5 5 4444 000 55555555555555555555555555555555555 11111 3 1 5 88888888 66 888 88888 3 8 5 5 8 44444 77 5 0 1 666666 6666 8 444 33 33 5 0 0 3 3 77 7777777 000000000 3 0 00 0 000 5555 2 999 00 2 0 5 2 1 0 7 7 66 0000000000000000 0 2 2 888 7 3 2 2 1 1 6 8 3 888888888888 1 0 8 0 6 1 222 33 1 555555 1 0 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 1 55555555555555555555555 1 5 88 5 44444444 1 5 5 1 77777 1 1
lowQualScore : ..... . . ... . . ................................................................ . . ...................... . .... . . ....... ..... . . . .... . . . .. . . ... . ...................................... . . ................... . . . .. . ... . . . ... .. .. . . . .... ... ................................... ..... . . . ........ .. ... ..... . . . . . ..... .. . . . ...... .... . ... .. .. . . . . . .. ....... ......... . . .. . ... .... . ... .. . . . . . . . . .. ................ . . . ... . . . . . . . . . ............ . . . . . . ... .. . ...... . . ................................................................................................................... . . ....................... . . .. . ........ . . . . ..... . .
lowQualScore : 00000 0 6 444 9 0 0000000000000000000000000000000000000000000000000000000000000000 0 0 5555555555555555555555 0 5555 3 9 4444444 55555 0 0 5 2222 0 0 8 99 7 0 000 0 55555555555555555555555555555555555555 2 8 0000000000000000000 0 6 8 22 5 666 4 7 0 000 44 33 0 0 0 2222 000 33333333333333333333333333333333333 11111 0 0 4 11111111 99 888 00000 2 5 0 0 9 33333 99 7 7 7 444444 8888 0 000 88 88 5 0 8 2 2 88 5555555 222222222 2 2 55 0 888 8888 5 222 88 5 2 5 0 2 2 0 0 88 2222222222222222 2 0 5 888 0 2 5 5 0 5 7 0 2 666666666666 0 6 0 8 0 4 222 88 2 000000 0 7 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 55555555555555555555555 0 5 00 0 55555555 0 5 0 0 00000 0 0
consensus : GGGTTTTTC-----A-TTTGTGGGT-T-AAGGACCGCTACAATAATA-TTTTA---------------------A---------------------G--------------------GGT-CCNA----------------------A-CTATTAGGC----ATCATGCTGATCTGATAA-G-C---T-TTTTATTTT-----T-TATT-GCAACCTTTTATTCAT----GAAGACAG-CT-GTCAGCTGTAAAAT--CACAA-CCCAGNAGGGCTCT---TGCTTGCATNTTTGGGA--------ATGAGGTTGGAAAAATGACANTACCCANGATCCTTGCAATATACATAGCTATTAAATATGTGTTTTAAGTATAAAAA-TGTGACCCTCATGTAGAAGGCNTCCTTAAAAATCAT-AA-TNTT---AAAAAGTA-CCCAAAACCGTNTCATGACA-TTCCTCATTTATTTACATTTC----CTTATA---TTAAA----------------ACT----------------TT-----TCCGTCATGCCTGGCTTATTTGCAAAGNTTCTAAATCGCGAATACCGATGACATTACGTAA--------AA--CAGTAGACTGTTCATTTGCAGTACG----AATTCACTGATGCTTATGATG-CA-AACGAT-----TGG--TC-ATTGTAAGAATA------ATTTAANA-TATAGACT-AAA---AAAGTACGAAAA--AGACAA--GCATAATTGCATTAAAACACATTTTAT-TTAATAAATTTCAATAACTCTCGGATT--CTC--A--ATACTTGTCACGTGACCAATAACGGTGT-TG-A-GTAAACAAACGGTAGTGCATATGATCCGCTACGTGCGGTCCATACGTAGGGAAAACGTTTTGGTAGAAAATTACAC---GAAT-AA----AACATCGCGATTTTGATGGAATTGTTGCAATAAAAGCGAATGTATATCTC-CNAAATATTTTCTTTGGTTTCTTTTCCTTTTGAAATTAGGAATTTTGTTACTTTGGATGGGAAAAGGAAAGGAATGAACGACATTGCTTTTTTGCGGAAACGTGTCCC-GGACGCAATG----GAATTTAAAAT-ACGAGTCCTCGGTCGAAAATGTGCGTCA-G-GACGC--AAGAAAAACCCAGG---GTGTTNAGTTCGGTTAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGCAGCTCTGACTACCATTTTGAGATGCTCCCATGAGCACAGGNGCTTTATAATGCTTTATACCTCATAANCGTCTCCATGATGTTTGATGAAGGAGCGGAAAGGCATCGGATGANAGCAAAGAGAAAAAATTATAACGGATTCTTTTTTCCACAATATCGGTCAAAAAGGTTANGGTCGGGGCTAAAAAAGATAGGGTCGGTCGGGATACTGGAAANAAACATATNTNTTTTTTAGGCCT
Reference ( family-1262 ) : GGGTTTTTC-----A-TTTGTGGGT-T-AAGGACCGCTACAATAATA-TTTTA---------------------A---------------------G--------------------GGT-CCNA----------------------A-CTATTAGGC----ATCATGCTGATCTGATAA-G-C---T-TTTTATTTT-----T-TATT-GCAACCTTTTATTCAT----GAAGACAG-CT-GTCAGCTGTAAAAT--CACAA-CCCAGNAGGGCTCT---TGCTTGCATNTTTGGGA--------ATGAGGTTGGAAAAATGACANTACCCANGATCCTTGCAATATACATAGCTATTAAATATGTGTTTTAAGTATAAAAA-TGTGACCCTCATGTAGAAGGCNTCCTTAAAAATCAT-AA-TNTT---AAAAAGTA-CCCAAAACCGTNTCATGACA-TTCCTCATTTATTTACATTTC----CTTATA---TTAAA----------------ACT----------------TT-----TCCGTCATGCCTGGCTTATTTGCAAAGNTTCTAAATCGCGAATACCGATGACATTACGTAA--------AA--CAGTAGACTGTTCATTTGCAGTACG----AATTCACTGATGCTTATGATG-CA-AACGAT-----TGG--TC-ATTGTAAGAATA------ATTTAANA-TATAGACT-AAA---AAAGTACGAAAA--AGACAA--GCATAATTGCATTAAAACACATTTTAT-TTAATAAATTTCAATAACTCTCGGATT--CTC--A--ATACTTGTCACGTGACCAATAACGGTGT-TG-A-GTAAACAAACGGTAGTGCATATGATCCGCTACGTGCGGTCCATACGTAGGGAAAACGTTTTGGTAGAAAATTACAC---GAAT-AA----AACATCGCGATTTTGATGGAATTGTTGCAATAAAAGCGAATGTATATCTC-CNAAATATTTTCTTTGGTTTCTTTTCCTTTTGAAATTAGGAATTTTGTTACTTTGGATGGGAAAAGGAAAGGAATGAACGACATTGCTTTTTTGCGGAAACGTGTCCC-GGACGCAATG----GAATTTAAAAT-ACGAGTCCTCGGTCGAAAATGTGCGTCA-G-GACGC--AAGAAAAACCCAGG---GTGTTNAGTTCGGTTAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGCAGCTCTGACTACCATTTTGAGATGCTCCCATGAGCACAGGNGCTTTATAATGCTTTATACCTCATAANCGTCTCCATGATGTTTGATGAAGGAGCGGAAAGGCATCGGATGANAGCAAAGAGAAAAAATTATAACGGATTCTTTTTTCCACAATATCGGTCAAAAAGGTTANGGTCGGGGCTAAAAAAGATAGGGTCGGTCGGGATACTGGAAANAAACATATNTNTTTTTTAGGCCT
gi|1 : GGGTTTTTC-----A-TTTG-----------GACCG-TACAATAATA-GTTTA---------------------G---------------------G--------------------GGT-CCAA----------------------A-CTATTAGGC----ATCATGCTGATCTGATAA-G-C---T-TTTTATTTT-----T-TATT-GCAACCTTTTATTCAT----GAAGACAG-CT-GT-------AAAAT--CACAA-CCCAGAAGGGCCCT---TGCTTGCACTTTTGGGA--------ATGAGCTTGGAG------------CCAGGATCCTT-CAATATACATAGC-----AAT-----------GTATAAAAA-TGTGACCCTCATTTAGAAGACAACCTTAAAAATCTT-AAATATT---AAAAATTT-CCCAAAACATTTTCATGAAA-TGCCTCATTTATTTACATTTC----CTTATA---TTAAA----------------ACT----------------TT-----TCCGTCATGCCTGTCTAATTTGCAAAGTTTCTAAATCGCGACTATTGATTATATTACGTAC--------AT--CAGTAGACTGTTCATTTGCAATACA----AAT-CATTGATGCTTATGATG-CA-AACGAT-----TGG--TC-ATTGTAAGAATA------ATTTAAGA-TATAGACC-AAA---AAAGTACAAAAA--AGACGA--GCATAATTGCATTAAAACACATTTTAT-TTAATAAATATCAATGACTTTCGGATT--CTCCCA--ATACTTGTCATGTGATCAATTACGTTGT-TATG-GTAAACAAATGGTAGTGCATATGATTTGCTACATGCGATCT-TACATAGGGAAAATGTTTTGGTAGAAAA--AAAC---AAAT-AA----AACATCACGATTTTGATGGAATTGTTACAATAAAAGTGAATATTTATCTC-CCAAACATTTTGTTTGGTTTCTTTTTCTTTTGAAATTAGGAATTTTGTTACTTTGGATGGGAAAAGGAAAGGAATTACCGACATTGCTTTTTTGCGGAAATGTGTACC-GGATGCATTG----GAATTTAAAATAATAAGTCCTTGGTTGAAAATGTGCGTCA-GAGATGC--AGGAAAAACCCA-----GTGTTTAGTTTGGTTAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGCAGCTCTGACTACCATTTTGAGATGCTCCCATGAGCACAAAGGCTTTATAATGCTTTATACCTTATAATCGTCTCCATGATGTT-----------------------GGATGACAGCAAAGAGAAAAAATTATA--GGATTCTTTTTTTCACAATATCGGTCAAAAAGATTAGGGTCGGGGCT-AAAAAGATAGGGTC-GTTGGGATACTGGAAAGA-----ATTTTTTTTTTAGACCT
gi|10 : AAA----------------ACT----------------TT-----TACATCATGCCTTGCTTtaccctaatgtcacttgtgataatttattaa
gi|10 : ttgtaattcatttatcttaaagctcaaacccccTTATTAATAAAGATTCTAAATCGCGAATACCGATGACATTACATAA--------AAAACAGTACACTGCCCACTTGCAGTACC----AATTCACCGATGTTTATGATGACA-AA-GAT-----TGG--TC-ATTGTAAGAATA------ATTgaaaatgtgatttccccacaaggtatttcacccttacaacagtaatcatgtcccattcctttgttttaattcactcaactatgctggtctattttaccatatttattaataaagattctaaatcgcgaataccgatgacattacataaaaaacagtacactgcccacttgcagtaccaattcaccgatgtttatgatgacaaagattggtcattgtaagaataatt
gi|11 : ttgtaattcatttatcttaaagctcaaacccccaaaacttttacatcatgccttgcttgaaaatgtgatttccccacaaggtatttcacccttacaacagtaatcatgtcccattcctttgttttaattcactcaactatgctggtctattttaccatatGGATGTTTC-----A-TTT-TGGGCCT-AAGCACCTTTACTAAACTA-TTCTA---------------------A---------------------GGGTCCCAACATCAATTTTGGGGT-CCTG----------------------A-CAAGTAGACTAATATCATGCTAATATG-TCT-G-C---CATTTTATTTTATTGTTATATT-GCTCCCTTCAATT-AT----GAAGACAG-CT-GCCAGCTGTAAAAAAACACAA-TCAAGAAGAGCTCT---GGCTTCCATTTTTGG---------------------AAAAT-ACAATAT-----AT--TTGTAATATATAAAGTTATTAAAT-----------GCACAAAAT-TGTGACCCTTTTGTAATAGACTACCTT
gi|12 : ttcctaGGATTTTTC-----A-TTTTTGGGT-T-AAAGACC-CTACAATAATA-CTTTA---------------------A---------------------G--------------------GGT-CCCA----------------------AACTATCAGGC----ATCATGCTGATCTGATAA-GGC---T-TTTTATTTT-----T-TATT-GCAACCTTTTATTCAT----GAAGACAG-CT-GTCAGCTGTAAAAT--CACA
gi|13 : tccctaGCAAAGCTTCTAAATCGCAAATACCAACGACATTACGTAC--------AA--CAGTAGGCTGTTCATTTGCAATACA----AA-TCACTGATGTTTACGATG-CA-AATGAT-----TGA--TC-ATTGTAAGAATACTAAAGATTTAATATTATAGA-T-AAATTTAAAGcc
gi|14 : GGTTTTTC-----A-TTTGTGGGT-T-AAGGACCACTACAATAATATTTTTA---------------------A---------------------G--------------------GGTCCCAA----------------------A-CTATTAGGC----ATCATGCTGATCTGATGA-G-----------GCTTT-----T-TATT-GCAACCTTTTATTCATAATGAAAGACAG-CT-GTCAGCTGTAAAAT--CACAA-CCCaaat
gi|15 : TA---CTGAA----------------ACT----------------TTGCTGGTTTGTTTTACCTGATCCATTTGTAAAAACTTTAAATCGCAAATATGGATGATATTACCTGA--------AA--CAGTTAACTGTTCATTAGCAGTATT----TATTCACTGAAGTTGATAATG-CA-
gi|16 : ttTCTTTGCATTGTGAATTTTGGAATTTTGTTACTTTGGATTGGGAAAAAAAAGGA
gi|17 : CA-TTCCTCATTTATTTACATTTC----CTTATG---TTAAACCTCAAGATCCCATAGACG----------------TT-----TCCATTGCACCTGGCTTtactatttgcatttggggattgggcagaaacacagagcgaaggctcaggggggttcaaaccaatgacactcggcc
gi|18 : GGATTTTC-----A-TTTGTAGGT-T-GAGGACCACTACAATAATA-TTT-A---------------------A---------------------G--------------------GGT-CCCA----------------------A-CTTTTAGGC----ATCATGCTGATATGATAA-G-ggaaatgttttcccaagtatttcaccctgacatatcaataactatgtcccattacct
gi|19 : taAAA-TAAGATTCTCATGTAGAAGGCCTTCTCAA---TCAT-AA-TTTT---AAAAAGTA-CTCAAAACTGTGTCATGACA-Tgc
gi|2 : TTC-----AATTTGGGAGT-CCAAGGACCACTACAATAATA-TTTTA---------------------AGTGGCCAAACACCAATTTTTGG--------------------GGT-TCCG----------------------A-CTATTAGAC----ATCATGCTGATCTG--CA-G-CACAT-TTTTATATT-----T-TGT---CATTCTTTTATTCAT----TAACACAATCTAGNNNNNNNNNNNNN--NNNNN-NNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATGTGACTCTCATGTAGAAGGTGTCCTT---AATCAT-AA-TTTT---AAAAAGTA-CCAAAAACCATGTTGTGACA-TTTCTAATTTATTTACATTTC----CTTTTG---TGA--------------------T----------------TT-----TCC
gi|2 : gttccctagaataAAGATTTTAAATCACGAATATTGATGACAATACATAA--------AA--CAGTA--CTGCTCACTGACAGTACTTACCACTTTACTGATG---ATGA---CA-AA-GAG-----TAT--TCGATT-TAAGACAA------ATTTA----------CT-AAA---AACCTATGAAAA--AGACAAAAGTA-AATTACATTTTTACATATTTCAT-TTCATTAATTTCAATAACACTC---TTTGCTC---------TTGTTACATGACCAATACTGGTGT-TG-ACATAAACAAATTA-AGTG-----GATC---TA------GTCCATGCATAGGACAAATGTTTTGGTAGAAAATTACACCTAGAATTAACAGTAACATCGC-ATTTGGATTGAATTGTATCAATAAAACTGGATGAATAT-TC-TAAAATA------------TCTTTT------------------TTTGTTACTTTGGATCGGAAA----------TGAAAGAAATTGCTTTTTTGAAGAAATGGGTCCCGGGACAC-ATGTCTACAGTTTAAAAT-ACAGGTCCTCATTTGAAAA-GTGCATCATA-GACAC--ATGAAAtccaaggtatttcaccttacaacataaatcatgtccaattactttgttttttatttactgaattacgctggtttgttttacaaaatttataagattttaaatcacgaatattgatgacaatacataaaacagtactgctcactgacagtacttaccactttactgatgatgacaaagagtattcgatttaagacaaatttactaaaaacctatgaaaaagacaaaagtaaattacatttttacatatttcatttcattaatttcaataacactctttgctcttgttacatgaccaatactggtgttgacataaacaaattaagtggatctagtccatgcataggacaaatgttttggtagaaaattacacctagaattaacagtaacatcgcatttggattgaattgtatcaataaaactggatgaatattctaaaatatctttttttgttactttggatcggaaatgaaagaaattgcttttttgaagaaatgggtcccgggacacatgtctacagtttaaaatacaggtcctcatttgaaaagtgcatcatagacacatgaaa
gi|3 : gttccctagaatattcaatttgggagtccaaggaccactacaataatattttaagtggccaaacaccaatttttggggttccgactattagacatcatgctgatctgcagcacatttttatattttgtcattcttttattcattaacacaatctagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaatgtgactctcatgtagaaggtgtccttaatcataattttaaaaagtaccaaaaaccatgttgtgacatttctaatttatttacatttccttttgtgattttcctccaaggtatttcaccttacaacataaatcatgtccaattactttgttttttatttactgaattacgctggtttgttttacaaaatttatGGCTTTTTT-----A-TTTGTGGGT-T-AAGGACCCCTATAATAATA-TTTTA---------------------A---------------------G--------------------GGT-CCCA----------------------ACCTATTAGGC----ATCATGCTGATCTGATAAGG-C---T-TTTTATTTT-----T-TATT-GCAACCTTTTATTCGT----GAAGACAG-GT-GTCA
gi|3 : tctaAAAA-TG--ACCTTCTTTTAGAAGA-AT--TTAAAAATCATCAA-TATT---AAAAAAAATCCCAAAACCTTTTCATGGCA-TTCCTCATTTATTTACATTTC----CTTATA---TTAAA----------------GCTCAATATCAACAAGAATTT-----TCCGTCATGCCTGGCTTATTTGCAAAGCTTATAAATCGCGAATACTGATTACATTACGTAC--------AA--TAGTAGACTGTTCATTTGCAAAACA----AA-TCACTGATGCTTATGATA-CATCACGATTTTGATGGAATT-GTTGCAATAA-A------AGTGAATA-TATAcaacccagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaatgaccttcttttagaagaatttaaaaatcatcaatattaaaaaaaatcccaaaaccttttcatggcattcctcatttatttacatttccttatattaaagctcaatatcaacaagaattttccgtcatgcctggcttatttgcaaagcttataaatcgcgaatactgattacattacgtacaatagtagactgttcatttgcaaaacaaatcactgatgcttatgatacatcacgattttgatggaattgttgcaataaaagtgaatatatatctcattaaaattttctttgctttcttttccttttgaaactagaaattgtgttactttggataggaaaggaatgaacgacattgcgtttttgcggaaacgtgtcccggatttaatgagatttaaactacgaatcctcagtcgaaaaagtgcgtcagga
gi|3 : tctaggcttttttatttgtgggttaaggacccctataataatattttaagggtcccaacctattaggcatcatgctgatctgataaggctttttattttttattgcaaccttttattcgtgaagacaggtgtcacaacccagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAT-GA----TACATCACGATTTTGATGGAATTGTTGCAATAAAAGTGAATATATATCTCATTAAA-ATTTTCTTTGCTTTCTTTTCCTTTTGAAACTAGAAATTGTGTTACTTTGGAT------AGGAAAGGAATGAACGACATTGCGTTTTTGCGGAAACGTGTCCC-GGATTTAATG----AGATTTAAACT-ACGAATCCTCAGTCGAAAAAGTGCGTCA-G-GAtctcattaaaattttctttgctttcttttccttttgaaactagaaattgtgttactttggataggaaaggaatgaacgacattgcgtttttgcggaaacgtgtcccggatttaatgagatttaaactacgaatcctcagtcgaaaaagtgcgtcagga
gi|4 : tctaggcttttttatttgtgggttaaggacccctataataatattttaagggtcccaacctattaggcatcatgctgatctgataaggctttttattttttattgcaaccttttattcgtgaagacaggtgtcacaacccagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaatgaccttcttttagaagaatttaaaaatcatcaatattaaaaaaaatcccaaaaccttttcatggcattcctcatttatttacatttccttatattaaagctcaatatcaacaagaattttccgtcatgcctggcttatttgcaaagcttataaatcgcgaatactgattacattacgtacaatagtagactgttcatttgcaaaacaaatcactgatgctt----------------ACT----------------TT-----TCCGTCATGCCTGGCTTATTTGCAAAGCTTCTTAATTGCGAATACAGATGACATTATGTAATTACGTATAA--CAGTA--CTGTTCATTTGCAATACA----AATTCACTGATGCTTACTATG-CA-AGCGAT-----TGG--TC-ATTGTAATAATA------ATTTACAA-TATAGACTTAAA---AAAATATGAAAA--AGACAA--ACATAATTGCGTTAAAACACATTTTATATCAA-AAATTTCAACAACTCTCAGATT--CTC--ACAACACTTGTCACGTGATCAATAACGGTGTATA-C-GTAAACAAATGGTAGTGCATATGATCCGCTACATGCAGTTC-TATGTTGGGAAAACACTTTGGTGGAAAATAACA---------AA----AACATCACGATTTTGATGGAATTGTTGCAATAAAAGCAAATGTATATCTC-C-AAATATTTTCTTTGGTTTCTTTTCCTTTTGAAAGTAGGAATTTTGTTCATTTGGATGGGAAAAGGAAAGGAATAAACGGCACTGCTTTTTTGCAGAAACGTGTCCA-G---------------------------GAGTCCTTGGTCG---ATCTGCATCA-GTGACGC--AAGAAAAACTCAGGACTGTGTTCAGTTTGAT
gi|5 : caggTCTTTCCCTTTTGAAATTAGGAATTTTGTTACTTTGGATGGTAAAAGGAAAGGAATGAACTACATTGCTTTTTTGCGGAAACGTGTACC-GAAAGTAATG----GAATTAAAAAT-ACAAGTCCTCGGTCAAAAATGT---T-----GACGCAAAAAAAAAAACCAGG-----GCTGCGTTCAGTTAAAC
gi|5 : GACTACCATTTTGAGATGTTCCCATGAGCACAGGCGCTTTATAATGCTTTATACCTCATAAGCGTCTCCATGATGTTTGATGAAGGAGCGGAAAGGCATCGAATGAAAGCAAAGAGAAAAAATT-TAACAAATT-TTTTTTCCACAA--------AAAAAGGTTATGGTTGGGGCTAAAAAAAATAGGGTTGGTCAGAATACTGGAAACAAACATATATATTTTTTAGGCCTgtttgataacgttggctaacatatgtttctgtacactgactctaactcataatagcacgcagttgcgataatgttagggcaccaggcattaaacctgtttgtcggtgaggaacacatatagactaccattttgagatgttcccatgagcacaggcgctttataatgctttatacctcataagcgtctccatgatgtttgatgaaggagcggaaaggcatcgaatgaaagcaaagagaaaaaatttaacaaattttttttccacaaaaaaaggttatggttggggctaaaaaaaatagggttggtcagaatactggaaacaaacatatatattttttaggcctgaatggtatgggaatttaaaactatttccttttcgtaattattaacttt
gi|6 : tctttcccttttgaaattaggaattttgttactttggatggtaaaaggaaaggaatgaactacattgcttttttgcggaaacgtgtaccgaaagtaatggaattaaaaatacaagtcctcggtcaaaaatgttgacgcaaaaaaaaaaaccagggctgcgttcagttaaacgtttgataacgttggctaacatatgtttctgtacactgactctaactcataatagcacgcagttgcgataatgttagggcaccaggcattaaacctgtttgtcggtgaggaacacatataGGTTTTTC-----A-TTTGTGGGT-T-AAGGACCACTACAATAATATTTTTA---------------------A---------------------G--------------------GGTCCCAA----------------------A-CTATTAGGC----ATCATGCTGATCTGATGA-G-----------GCTTT-----T-TATT-GCAACCTTTTATTCATAATGAAAGACAG-CT-GTCAGCTGTAAAAT--CACAA-CCCAgaatggtatgggaatttaaaactatttccttttcgtaattattaacttt
gi|6 : AAAA-GGTGACCTTCTTTTAGAAGACGT---TAAAAATCATCAA-TATTGAAAAAAAGT--CCCAAAACCTTTGAATGAC---TCCTCATTTATTTACATTCC----ATTATA---ATAAA----------------GCT----------------tannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaaggtgaccttcttttagaagacgttaaaaatcatcaatattgaaaaaaagtcccaaaacctttgaatgactcctcatttatttacattccattataataaagctcaatatccataaga
gi|7 : ggtttttcatttgtgggttaaggaccactacaataatatttttaagggtcccaaactattaggcatcatgctgatctgatgaggctttttattgcaaccttttattcataatgaaagacagctgtcagctgtaaaatcacaacccatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGGTTTTCCTTAGGA-TTTG-GGGT-TCAAGAACCGCTCCAATAATA-TTTTAACTGTCCCCAAAACCAATTTTA---------------------G--------------------GGT-CCGG----------------------A-CTATTAGAC----ACCATTCTGATCTG-CAGTG-C---C-TTTTTTATT-----T-TATTGGCATCATTTTATTCAT----GAA-------------------------CACAA-CCCAGCAGGGTTATTGCTGCTTGCATATTTGGAAATGACTCGATGAGGTTGAAAAAAcaatatccataaga
gi|7 : aAGAA-TGTGATTCTCATGCAGAAGGTTTCCTT---AATCAT-AA-TTTT---GAAAAATA-CCCAA-----TACCACGACAGTTCTTTTTCTGTTT-TATTTaaatgctttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaatgtgattctcatgcagaaggtttccttaatcataattttgaaaaatacccaataccacgacagttctttttctgttttatttgtaatatattttttttataact
gi|8 : agggttttccttaggatttggggttcaagaaccgctccaataatattttaactgtccccaaaaccaattttagggtccggactattagacaccattctgatctgcagtgccttttttattttattggcatcattttattcatgaacacaacccagcagggttattgctgcttgcatatttggaaatgactcgatgaggttgaaaaaaaaatgctttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGATTTTTC-----A-TTTGGGGGT-CCAAGGACCCATACAATAATG-TTTTA---------------------A---------------------G--------------------GGT-TCAAATACCAATTTTGGTGGTCACCGA-CTATTAGAC----ATCATGCTGATCTgtaatatattttttttataact
gi|8 : tatatgttattatgtacagggttttcccta--CACAAACCCAGCAGGGTTCT---TGCTTGCATATTTGGGA--------ATGAGGATGGAAAAATGACATTACCCACGGTCCTT-CAACATACATAAC-----AATATGTGTTTTAAGTATAAAAA-TAAGATTCTCATGTAGAAGGCCTTCTC---AATCAT-AA-TTTT---AAAAAGTA-CTCAAAACTGTGTCATGACA-TTTGTAATTCATTT--ATCTTAAAGCTCAAACCCCCAAA----------------ACT----------------TT-----TACATCATGCCTtcatgaacacaaacccagcagggttcttgcttgcatatttgggaatgaggatggaaaaatgacattacccacggtccttcaacatacataacaatatgtgttttaagtataaaaataagattctcatgtagaaggccttctcaatcataattttaaaaagtactcaaaactgtgtcatgacatttgtaattcatttatcttaaagctcaaacccccaaaacttttacatcatgcct
gi|9 : tatatgttattatgtacagggttttccctaggatttttcatttgggggtccaaggacccatacaataatgttttaagggttcaaataccaattttggtggtcaccgactattagacatcatgctgatcttcatgaaA----------------ACT----------------TC-----TTTG----GTCTG--TTACATGTAAAGATTCCAAATCGCGAATATAGATGACATTAAGTAA--------AG--CAGT-GGCTTCTCGTTTACAGTATG----AATTCACAGACG-TTATT-TG--A-AATAAA-----TGA--TC-ATTGTAACAGTA------ATTTATGT-TACATACT-AAT---TAAGTACAAAAATTACAAAA--GTA-AACTACATTAAAACATATTTTAG-TTGATAAA-TTCAG----TCTTGGG-----TC--A--AT--T---------ACCCATAACAGTGT-TG-AGGTAAACAAACACTAGTGCATATGATTCAATATGTCCGATCCAGACATGGACAAAACA-TTTGGT------TTAC----------AA----AACATTGCGAT
blockSeqs : TTAGG A T CT T T AGTGGCCAAACACCAATTTTTGG C T ATACCAATTTTGGTGGTCACCG A TAAT A G CACAT ATTGT A G AATG T A AA A A TGC T NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN N G NNNNNNNNNNNNNNNNNNN A T CT C AAA C . T GAA AT TG G G A AAAG CCC CCTCAAGATCCCATAGACG GCTGG G A C TTACGTAT AA ACA TTACC T T A T T TTTGA AA G T CTAAAG ATAT T TTT TT AA T A T T TA AGATT ACAACAC T A AC TGGT C CGC CA G A A A T A TT ACCTAGAATTAACAGT T C ATT T T C C C T T G G CACATGTCTAC T . A A TA AA T GGACTG C C G TGATGAAGGAGCGGAAAGGCATC A . AC . . T A G C AACAT A A
blockSeqs : . . T CC A T ACTGTCCCCAAAACCAATTTTAG C C . C . A T CCA . . . AATG . . . . N . N GAATGAGGATGGAAAAATGACATTACCCAC C N AATATGTGTTTTAA . A CC T AAA C . T . A CA G . A . . GCTCAATATCAACAAGAAT . A C C . . AGG C T T . . C . . . T . ATA . . . . . . T T CA TTTG AAT T . AG CACT C CAA TG C A G T C G TA AAA T C TA T T C G C C C . G TTTAATGA T . T G GT . A GG G
blockSeqs : . . T TC A . AGGGTCCCAACATCAATTTTGG . A . . . A . GCT . . . . . . . . C . A AAAATACAATAT . . TATTAAAT . T TG C AA . . A . A CT T . A . . ACT . G A G . . TAA A T T . . C . . . A . CAA . . . . . . . . . GGG . . . C TTA . . . . . A G . . TT AA C . C . . . . C G G . A AGTAATGG A . T A G . A
blockSeqs : . . T CC A . AG . C . . . A . CT . . . . . . . . C . A . T CG C . . . A . A CT T . A . . ACT . G A T . . AGA T T C . . T . . . T . TGT . . C T G . . . . . . . .
blockSeqs : . . G T C . AG . C . . . A . CC . . . . . . . . . T TT T . . . T . A TG A . . . . ACT . G C T . . GG A T C . . . . . . T . . . . .
blockSeqs : . . T T A . AG . C . . . . . . . . . . . . . . . A CC . . . . T . . . G . . . GCT . . C A . . A A . . . . . . . . . .
blockSeqs : . . T T G . AG . A . . . . . . . . . . . . . . . A . . ACT . A A . . A G . . . .
blockSeqs : . . G T C . AG . G . . . . . ACT .
blockSeqs : . . . T . . AG . A . . . T
blockSeqCons : T** AA*
originalCons : GGGTTTTTC-----A-TTTGTGGGT-T-AAGGACCGCTACAATAATA-TTTTA---------------------A---------------------G--------------------GGT-CCNA----------------------A-CTATTAGGC----ATCATGCTGATCTGATAA-G-C---T-TTTTATTTT-----T-TATT-GCAACCTTTTATTCAT----GAAGACAG-CT-GTCAGCTGTAAAAT--CACAA-CCCAGNAGGGCTCT---TGCTTGCATNTTTGGGA--------ATGAGGTTGGAAAAATGACANTACCCANGATCCTTGCAATATACATAGCTATTAAATATGTGTTTTAAGTATAAAAA-TGTGACCCTCATGTAGAAGGCNTCCTTAAAAATCAT-AA-TNTT---AAAAAGTA-CCCAAAACCGTNTCATGACA-TTCCTCATTTATTTACATTTC----CTTATA---TTAAA----------------ACT----------------TT-----TCCGTCATGCCTGGCTTATTTGCAAAGNTTCTAAATCGCGAATACCGATGACATTACGTAA--------AA--CAGTAGACTGTTCATTTGCAGTACG----AATTCACTGATGCTTATGATG-CA-AACGAT-----TGG--TC-ATTGTAAGAATA------ATTTAANA-TATAGACT-AAA---AAAGTACGAAAA--AGACAA--GCATAATTGCATTAAAACACATTTTAT-TTAATAAATTTCAATAACTCTCGGATT--CTC--A--ATACTTGTCACGTGACCAATAACGGTGT-TG-A-GTAAACAAACGGTAGTGCATATGATCCGCTACGTGCGGTCCATACGTAGGGAAAACGTTTTGGTAGAAAATTACAC---GAAT-AA----AACATCGCGATTTTGATGGAATTGTTGCAATAAAAGCGAATGTATATCTC-CNAAATATTTTCTTTGGTTTCTTTTCCTTTTGAAATTAGGAATTTTGTTACTTTGGATGGGAAAAGGAAAGGAATGAACGACATTGCTTTTTTGCGGAAACGTGTCCC-GGACGCAATG----GAATTTAAAAT-ACGAGTCCTCGGTCGAAAATGTGCGTCA-G-GACGC--AAGAAAAACCCAGG---GTGTTNAGTTCGGTTAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGCAGCTCTGACTACCATTTTGAGATGCTCCCATGAGCACAGGNGCTTTATAATGCTTTATACCTCATAANCGTCTCCATGATGTTTGATGAAGGAGCGGAAAGGCATCGGATGANAGCAAAGAGAAAAAATTATAACGGATTCTTTTTTCCACAATATCGGTCAAAAAGGTTANGGTCGGGGCTAAAAAAGATAGGGTCGGTCGGGATACTGGAAANAAACATATNTNTTTTTTAGGCCT
finalCons : GGGTTTTTC-----A-TTTGTGGGTT--AAGGACCGCTACAATAATA-TTTTA---------------------A---------------------G--------------------GGT-CCNA----------------------A-CTATTAGGC----ATCATGCTGATCTGATAA-G-C---T-TTTTATTTT-----T-TATT-GCAACCTTTTATTCAT----GAAGACAG-CT-GTCAGCTGTAAAAT--CACAA-CCCAGNAGGGCTCT---TGCTTGCATNTTTGGGA--------ATGAGGTTGGAAAAATGACANTACCCANGATCCTTGCAATATACATAGCTATTAAATATGTGTTTTAAGTATAAAAA-TGTGACCCTCATGTAGAAGGCNTCCTTAA-AATCAT-AA-TNTT---AAAAAGTA-CCCAAAACCGTNTCATGACA-TTCCTCATTTATTTACATTTC----CTTATA---TTAAA----------------ACT----------------TT-----TCCGTCATGCCTGGCTTATTTGCAAAGNTTCTAAATCGCGAATACCGATGACATTACGTAA--------AA--CAGTAGACTGTTCATTTGCAGTACG----AATTCACTGATGCTTATGATG-CA-AACGAT-----TGG--TC-ATTGTAAGAATA------ATTTAANA-TATAGACT-AAA---AAAGTACGAAAA--AGACAA--GCATAATTGCATTAAAACACATTTTAT-TTAATAAATTTCAATAACTCTCGGATT--CTC--A--ATACTTGTCACGTGACCAATAACGGTGT-TG-A-GTAAACAAACGGTAGTGCATATGATCCGCTACGTGCGGTCCATACGTAGGGAAAACGTTTTGGTAGAAAATTACAC---GAAT-AA----AACATCGCGATTTTGATGGAATTGTTGCAATAAAAGCGAATGTATATCTC-CNAAATATTTTCTTTGGTTTCTTTTCCTTTTGAAATTAGGAATTTTGTTACTTTGGATGGGAAAAGGAAAGGAATGAACGACATTGCTTTTTTGCGGAAACGTGTCCC-GGACGCAATG----GAATTTAAAAT-ACGAGTCCTCGGTCGAAAATGTGCGTCA-G-GACGC--AAGAAAAACCCAGG---GTGTTNAGTTCGGTTAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGCAGCTCTGACTACCATTTTGAGATGCTCCCATGAGCACAGGNGCTTTATAATGCTTTATACCTCATAANCGTCTCCATGATGTTTGATGAAGGAGCGGAAAGGCATCGGATGANAGCAAAGAGAAAAAATTATAACGGATTCTTTTTTCCACAATATCGGTCAAAAAGGTTANGGTCGGGGCTAAAAAAGATAGGGTCGGTCGGGATACTGGAAANAAACATATNTNTTTTTTAGGCCT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 111 8888888888888888888888888888888888888888888888888888888888888888 3333333333333333333333 2222222 11111 2222 111 33333333333333333333333333333333333333 1 9999999999999999999 111 1 111 1111 111 33333333333333333333333333333333333 11111 11111111 11111 11111 111111 1111 111 11 11 1 1 1111111 444444444 1 333 11 1 5555555555555555 111 222222222222 222 11 333333 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 77777777777777777777777 1 11 1 33333333 1 1 22222
lowQualScore : 00000 4 5 222 8 8 3333333333333333333333333333333333333333333333333333333333333333 8 1 5555555555555555555555 8 8888 7 8 1111111 22222 5 5 0 1111 5 5 0 66 5 1 444 1 66666666666666666666666666666666666666 5 7 3333333333333333333 5 3 0 1 6 444 5 1 5 1 000 77 88 1 5 5 4444 000 55555555555555555555555555555555555 11111 3 1 5 88888888 66 888 88888 3 8 5 5 8 44444 77 5 0 1 666666 6666 8 444 33 33 5 0 0 3 3 77 7777777 000000000 3 0 00 0 000 5555 2 999 00 2 0 5 2 1 0 7 7 66 0000000000000000 0 2 2 888 7 3 2 2 1 1 6 8 3 888888888888 1 0 8 0 6 1 222 33 1 555555 1 0 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 1 55555555555555555555555 1 5 88 5 44444444 1 5 5 1 77777 1 1
lowQualScore : ..... . . ... . . ................................................................ . . ...................... . .... . . ....... ..... . . . .... . . . .. . . ... . ...................................... . . ................... . . . . . ... . . . . ... .. .. . . . .... ... ................................... ..... . . . ........ .. ... ..... . . . . . ..... .. . . . ...... .... . ... .. .. . . . . . .. ....... ......... . . .. . ... .... . ... .. . . . . . . . . .. ................ . . . ... . . . . . . . . . ............ . . . . . . ... .. . ...... . . ................................................................................................................... . . ....................... . . .. . ........ . . . . ..... . .
lowQualScore : 00000 0 6 444 9 0 0000000000000000000000000000000000000000000000000000000000000000 0 0 5555555555555555555555 0 5555 3 9 4444444 55555 0 0 5 2222 0 0 8 99 7 0 000 0 55555555555555555555555555555555555555 2 8 0000000000000000000 0 6 8 0 5 555 7 4 7 0 000 44 33 0 0 0 2222 000 33333333333333333333333333333333333 11111 0 0 4 11111111 99 888 00000 2 5 0 0 9 33333 99 7 7 7 444444 8888 0 000 88 88 5 0 8 2 2 88 5555555 222222222 2 2 55 0 888 8888 5 222 88 5 2 5 0 2 2 0 0 88 2222222222222222 2 0 5 888 0 2 5 5 0 5 7 0 2 666666666666 0 6 0 8 0 4 222 88 2 000000 0 7 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 55555555555555555555555 0 5 00 0 55555555 0 5 0 0 00000 0 0
consensus : GGGTTTTTC-----A-TTTGTGGGT-T-AAGGACCGCTACAATAATA-TTTTA---------------------A---------------------G--------------------GGT-CCNA----------------------A-CTATTAGGC----ATCATGCTGATCTGATAA-G-C---T-TTTTATTTT-----T-TATT-GCAACCTTTTATTCAT----GAAGACAG-CT-GTCAGCTGTAAAAT--CACAA-CCCAGNAGGGCTCT---TGCTTGCATNTTTGGGA--------ATGAGGTTGGAAAAATGACANTACCCANGATCCTTGCAATATACATAGCTATTAAATATGTGTTTTAAGTATAAAAA-TGTGACCCTCATGTAGAAGGCNTCCTTAAAA-TCAT-AA-TNTT---AAAAAGTA-CCCAAAACCGTNTCATGACA-TTCCTCATTTATTTACATTTC----CTTATA---TTAAA----------------ACT----------------TT-----TCCGTCATGCCTGGCTTATTTGCAAAGNTTCTAAATCGCGAATACCGATGACATTACGTAA--------AA--CAGTAGACTGTTCATTTGCAGTACG----AATTCACTGATGCTTATGATG-CA-AACGAT-----TGG--TC-ATTGTAAGAATA------ATTTAANA-TATAGACT-AAA---AAAGTACGAAAA--AGACAA--GCATAATTGCATTAAAACACATTTTAT-TTAATAAATTTCAATAACTCTCGGATT--CTC--A--ATACTTGTCACGTGACCAATAACGGTGT-TG-A-GTAAACAAACGGTAGTGCATATGATCCGCTACGTGCGGTCCATACGTAGGGAAAACGTTTTGGTAGAAAATTACAC---GAAT-AA----AACATCGCGATTTTGATGGAATTGTTGCAATAAAAGCGAATGTATATCTC-CNAAATATTTTCTTTGGTTTCTTTTCCTTTTGAAATTAGGAATTTTGTTACTTTGGATGGGAAAAGGAAAGGAATGAACGACATTGCTTTTTTGCGGAAACGTGTCCC-GGACGCAATG----GAATTTAAAAT-ACGAGTCCTCGGTCGAAAATGTGCGTCA-G-GACGC--AAGAAAAACCCAGG---GTGTTNAGTTCGGTTAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGCAGCTCTGACTACCATTTTGAGATGCTCCCATGAGCACAGGNGCTTTATAATGCTTTATACCTCATAANCGTCTCCATGATGTTTGATGAAGGAGCGGAAAGGCATCGGATGANAGCAAAGAGAAAAAATTATAACGGATTCTTTTTTCCACAATATCGGTCAAAAAGGTTANGGTCGGGGCTAAAAAAGATAGGGTCGGTCGGGATACTGGAAANAAACATATNTNTTTTTTAGGCCT
Reference ( family-1262 ) : GGGTTTTTC-----A-TTTGTGGGT-T-AAGGACCGCTACAATAATA-TTTTA---------------------A---------------------G--------------------GGT-CCNA----------------------A-CTATTAGGC----ATCATGCTGATCTGATAA-G-C---T-TTTTATTTT-----T-TATT-GCAACCTTTTATTCAT----GAAGACAG-CT-GTCAGCTGTAAAAT--CACAA-CCCAGNAGGGCTCT---TGCTTGCATNTTTGGGA--------ATGAGGTTGGAAAAATGACANTACCCANGATCCTTGCAATATACATAGCTATTAAATATGTGTTTTAAGTATAAAAA-TGTGACCCTCATGTAGAAGGCNTCCTTAAAA-TCAT-AA-TNTT---AAAAAGTA-CCCAAAACCGTNTCATGACA-TTCCTCATTTATTTACATTTC----CTTATA---TTAAA----------------ACT----------------TT-----TCCGTCATGCCTGGCTTATTTGCAAAGNTTCTAAATCGCGAATACCGATGACATTACGTAA--------AA--CAGTAGACTGTTCATTTGCAGTACG----AATTCACTGATGCTTATGATG-CA-AACGAT-----TGG--TC-ATTGTAAGAATA------ATTTAANA-TATAGACT-AAA---AAAGTACGAAAA--AGACAA--GCATAATTGCATTAAAACACATTTTAT-TTAATAAATTTCAATAACTCTCGGATT--CTC--A--ATACTTGTCACGTGACCAATAACGGTGT-TG-A-GTAAACAAACGGTAGTGCATATGATCCGCTACGTGCGGTCCATACGTAGGGAAAACGTTTTGGTAGAAAATTACAC---GAAT-AA----AACATCGCGATTTTGATGGAATTGTTGCAATAAAAGCGAATGTATATCTC-CNAAATATTTTCTTTGGTTTCTTTTCCTTTTGAAATTAGGAATTTTGTTACTTTGGATGGGAAAAGGAAAGGAATGAACGACATTGCTTTTTTGCGGAAACGTGTCCC-GGACGCAATG----GAATTTAAAAT-ACGAGTCCTCGGTCGAAAATGTGCGTCA-G-GACGC--AAGAAAAACCCAGG---GTGTTNAGTTCGGTTAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGCAGCTCTGACTACCATTTTGAGATGCTCCCATGAGCACAGGNGCTTTATAATGCTTTATACCTCATAANCGTCTCCATGATGTTTGATGAAGGAGCGGAAAGGCATCGGATGANAGCAAAGAGAAAAAATTATAACGGATTCTTTTTTCCACAATATCGGTCAAAAAGGTTANGGTCGGGGCTAAAAAAGATAGGGTCGGTCGGGATACTGGAAANAAACATATNTNTTTTTTAGGCCT
gi|1 : GGGTTTTTC-----A-TTTG-----------GACCG-TACAATAATA-GTTTA---------------------G---------------------G--------------------GGT-CCAA----------------------A-CTATTAGGC----ATCATGCTGATCTGATAA-G-C---T-TTTTATTTT-----T-TATT-GCAACCTTTTATTCAT----GAAGACAG-CT-GT-------AAAAT--CACAA-CCCAGAAGGGCCCT---TGCTTGCACTTTTGGGA--------ATGAGCTTGGAG------------CCAGGATCCTT-CAATATACATAGC-----AAT-----------GTATAAAAA-TGTGACCCTCATTTAGAAGACAACCTTAAAAATCTT-AAATATT---AAAAATTT-CCCAAAACATTTTCATGAAA-TGCCTCATTTATTTACATTTC----CTTATA---TTAAA----------------ACT----------------TT-----TCCGTCATGCCTGTCTAATTTGCAAAGTTTCTAAATCGCGACTATTGATTATATTACGTAC--------AT--CAGTAGACTGTTCATTTGCAATACA----AAT-CATTGATGCTTATGATG-CA-AACGAT-----TGG--TC-ATTGTAAGAATA------ATTTAAGA-TATAGACC-AAA---AAAGTACAAAAA--AGACGA--GCATAATTGCATTAAAACACATTTTAT-TTAATAAATATCAATGACTTTCGGATT--CTCCCA--ATACTTGTCATGTGATCAATTACGTTGT-TATG-GTAAACAAATGGTAGTGCATATGATTTGCTACATGCGATCT-TACATAGGGAAAATGTTTTGGTAGAAAA--AAAC---AAAT-AA----AACATCACGATTTTGATGGAATTGTTACAATAAAAGTGAATATTTATCTC-CCAAACATTTTGTTTGGTTTCTTTTTCTTTTGAAATTAGGAATTTTGTTACTTTGGATGGGAAAAGGAAAGGAATTACCGACATTGCTTTTTTGCGGAAATGTGTACC-GGATGCATTG----GAATTTAAAATAATAAGTCCTTGGTTGAAAATGTGCGTCA-GAGATGC--AGGAAAAACCCA-----GTGTTTAGTTTGGTTAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGCAGCTCTGACTACCATTTTGAGATGCTCCCATGAGCACAAAGGCTTTATAATGCTTTATACCTTATAATCGTCTCCATGATGTT-----------------------GGATGACAGCAAAGAGAAAAAATTATA--GGATTCTTTTTTTCACAATATCGGTCAAAAAGATTAGGGTCGGGGCT-AAAAAGATAGGGTC-GTTGGGATACTGGAAAGA-----ATTTTTTTTTTAGACCT
gi|10 : AAA----------------ACT----------------TT-----TACATCATGCCTTGCTTtaccctaatgtcacttgtgataatttattaa
gi|10 : ttgtaattcatttatcttaaagctcaaacccccTTATTAATAAAGATTCTAAATCGCGAATACCGATGACATTACATAA--------AAAACAGTACACTGCCCACTTGCAGTACC----AATTCACCGATGTTTATGATGACA-AA-GAT-----TGG--TC-ATTGTAAGAATA------ATTgaaaatgtgatttccccacaaggtatttcacccttacaacagtaatcatgtcccattcctttgttttaattcactcaactatgctggtctattttaccatatttattaataaagattctaaatcgcgaataccgatgacattacataaaaaacagtacactgcccacttgcagtaccaattcaccgatgtttatgatgacaaagattggtcattgtaagaataatt
gi|11 : ttgtaattcatttatcttaaagctcaaacccccaaaacttttacatcatgccttgcttgaaaatgtgatttccccacaaggtatttcacccttacaacagtaatcatgtcccattcctttgttttaattcactcaactatgctggtctattttaccatatGGATGTTTC-----A-TTT-TGGGCCT-AAGCACCTTTACTAAACTA-TTCTA---------------------A---------------------GGGTCCCAACATCAATTTTGGGGT-CCTG----------------------A-CAAGTAGACTAATATCATGCTAATATG-TCT-G-C---CATTTTATTTTATTGTTATATT-GCTCCCTTCAATT-AT----GAAGACAG-CT-GCCAGCTGTAAAAAAACACAA-TCAAGAAGAGCTCT---GGCTTCCATTTTTGG---------------------AAAAT-ACAATAT-----AT--TTGTAATATATAAAGTTATTAAAT-----------GCACAAAAT-TGTGACCCTTTTGTAATAGACTACCTT
gi|12 : ttcctaGGATTTTTC-----A-TTTTTGGGT-T-AAAGACC-CTACAATAATA-CTTTA---------------------A---------------------G--------------------GGT-CCCA----------------------AACTATCAGGC----ATCATGCTGATCTGATAA-GGC---T-TTTTATTTT-----T-TATT-GCAACCTTTTATTCAT----GAAGACAG-CT-GTCAGCTGTAAAAT--CACA
gi|13 : tccctaGCAAAGCTTCTAAATCGCAAATACCAACGACATTACGTAC--------AA--CAGTAGGCTGTTCATTTGCAATACA----AA-TCACTGATGTTTACGATG-CA-AATGAT-----TGA--TC-ATTGTAAGAATACTAAAGATTTAATATTATAGA-T-AAATTTAAAGcc
gi|14 : GGTTTTTC-----A-TTTGTGGGT-T-AAGGACCACTACAATAATATTTTTA---------------------A---------------------G--------------------GGTCCCAA----------------------A-CTATTAGGC----ATCATGCTGATCTGATGA-G-----------GCTTT-----T-TATT-GCAACCTTTTATTCATAATGAAAGACAG-CT-GTCAGCTGTAAAAT--CACAA-CCCaaat
gi|15 : TA---CTGAA----------------ACT----------------TTGCTGGTTTGTTTTACCTGATCCATTTGTAAAAACTTTAAATCGCAAATATGGATGATATTACCTGA--------AA--CAGTTAACTGTTCATTAGCAGTATT----TATTCACTGAAGTTGATAATG-CA-
gi|16 : ttTCTTTGCATTGTGAATTTTGGAATTTTGTTACTTTGGATTGGGAAAAAAAAGGA
gi|17 : CA-TTCCTCATTTATTTACATTTC----CTTATG---TTAAACCTCAAGATCCCATAGACG----------------TT-----TCCATTGCACCTGGCTTtactatttgcatttggggattgggcagaaacacagagcgaaggctcaggggggttcaaaccaatgacactcggcc
gi|18 : GGATTTTC-----A-TTTGTAGGT-T-GAGGACCACTACAATAATA-TTT-A---------------------A---------------------G--------------------GGT-CCCA----------------------A-CTTTTAGGC----ATCATGCTGATATGATAA-G-ggaaatgttttcccaagtatttcaccctgacatatcaataactatgtcccattacct
gi|19 : taAAA-TAAGATTCTCATGTAGAAGGCCTTCTCAA---TCAT-AA-TTTT---AAAAAGTA-CTCAAAACTGTGTCATGACA-Tgc
gi|2 : TTC-----AATTTGGGAGT-CCAAGGACCACTACAATAATA-TTTTA---------------------AGTGGCCAAACACCAATTTTTGG--------------------GGT-TCCG----------------------A-CTATTAGAC----ATCATGCTGATCTG--CA-G-CACAT-TTTTATATT-----T-TGT---CATTCTTTTATTCAT----TAACACAATCTAGNNNNNNNNNNNNN--NNNNN-NNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATGTGACTCTCATGTAGAAGGTGTCCTT--AA-TCAT-AA-TTTT---AAAAAGTA-CCAAAAACCATGTTGTGACA-TTTCTAATTTATTTACATTTC----CTTTTG---TGA--------------------T----------------TT-----TCC
gi|2 : gttccctagaataAAGATTTTAAATCACGAATATTGATGACAATACATAA--------AA--CAGTA--CTGCTCACTGACAGTACTTACCACTTTACTGATG---ATGA---CA-AA-GAG-----TAT--TCGATT-TAAGACAA------ATTTA----------CT-AAA---AACCTATGAAAA--AGACAAAAGTA-AATTACATTTTTACATATTTCAT-TTCATTAATTTCAATAACACTC---TTTGCTC---------TTGTTACATGACCAATACTGGTGT-TG-ACATAAACAAATTA-AGTG-----GATC---TA------GTCCATGCATAGGACAAATGTTTTGGTAGAAAATTACACCTAGAATTAACAGTAACATCGC-ATTTGGATTGAATTGTATCAATAAAACTGGATGAATAT-TC-TAAAATA------------TCTTTT------------------TTTGTTACTTTGGATCGGAAA----------TGAAAGAAATTGCTTTTTTGAAGAAATGGGTCCCGGGACAC-ATGTCTACAGTTTAAAAT-ACAGGTCCTCATTTGAAAA-GTGCATCATA-GACAC--ATGAAAtccaaggtatttcaccttacaacataaatcatgtccaattactttgttttttatttactgaattacgctggtttgttttacaaaatttataagattttaaatcacgaatattgatgacaatacataaaacagtactgctcactgacagtacttaccactttactgatgatgacaaagagtattcgatttaagacaaatttactaaaaacctatgaaaaagacaaaagtaaattacatttttacatatttcatttcattaatttcaataacactctttgctcttgttacatgaccaatactggtgttgacataaacaaattaagtggatctagtccatgcataggacaaatgttttggtagaaaattacacctagaattaacagtaacatcgcatttggattgaattgtatcaataaaactggatgaatattctaaaatatctttttttgttactttggatcggaaatgaaagaaattgcttttttgaagaaatgggtcccgggacacatgtctacagtttaaaatacaggtcctcatttgaaaagtgcatcatagacacatgaaa
gi|3 : gttccctagaatattcaatttgggagtccaaggaccactacaataatattttaagtggccaaacaccaatttttggggttccgactattagacatcatgctgatctgcagcacatttttatattttgtcattcttttattcattaacacaatctagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaatgtgactctcatgtagaaggtgtccttaatcataattttaaaaagtaccaaaaaccatgttgtgacatttctaatttatttacatttccttttgtgattttcctccaaggtatttcaccttacaacataaatcatgtccaattactttgttttttatttactgaattacgctggtttgttttacaaaatttatGGCTTTTTT-----A-TTTGTGGGT-T-AAGGACCCCTATAATAATA-TTTTA---------------------A---------------------G--------------------GGT-CCCA----------------------ACCTATTAGGC----ATCATGCTGATCTGATAAGG-C---T-TTTTATTTT-----T-TATT-GCAACCTTTTATTCGT----GAAGACAG-GT-GTCA
gi|3 : tctaAAAA-TG--ACCTTCTTTTAGAAGAATT--TAAAAA-TCATCAA-TATT---AAAAAAAATCCCAAAACCTTTTCATGGCA-TTCCTCATTTATTTACATTTC----CTTATA---TTAAA----------------GCTCAATATCAACAAGAATTT-----TCCGTCATGCCTGGCTTATTTGCAAAGCTTATAAATCGCGAATACTGATTACATTACGTAC--------AA--TAGTAGACTGTTCATTTGCAAAACA----AA-TCACTGATGCTTATGATA-CATCACGATTTTGATGGAATT-GTTGCAATAA-A------AGTGAATA-TATAcaacccagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaatgaccttcttttagaagaatttaaaaatcatcaatattaaaaaaaatcccaaaaccttttcatggcattcctcatttatttacatttccttatattaaagctcaatatcaacaagaattttccgtcatgcctggcttatttgcaaagcttataaatcgcgaatactgattacattacgtacaatagtagactgttcatttgcaaaacaaatcactgatgcttatgatacatcacgattttgatggaattgttgcaataaaagtgaatatatatctcattaaaattttctttgctttcttttccttttgaaactagaaattgtgttactttggataggaaaggaatgaacgacattgcgtttttgcggaaacgtgtcccggatttaatgagatttaaactacgaatcctcagtcgaaaaagtgcgtcagga
gi|3 : tctaggcttttttatttgtgggttaaggacccctataataatattttaagggtcccaacctattaggcatcatgctgatctgataaggctttttattttttattgcaaccttttattcgtgaagacaggtgtcacaacccagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAT-GA----TACATCACGATTTTGATGGAATTGTTGCAATAAAAGTGAATATATATCTCATTAAA-ATTTTCTTTGCTTTCTTTTCCTTTTGAAACTAGAAATTGTGTTACTTTGGAT------AGGAAAGGAATGAACGACATTGCGTTTTTGCGGAAACGTGTCCC-GGATTTAATG----AGATTTAAACT-ACGAATCCTCAGTCGAAAAAGTGCGTCA-G-GAtctcattaaaattttctttgctttcttttccttttgaaactagaaattgtgttactttggataggaaaggaatgaacgacattgcgtttttgcggaaacgtgtcccggatttaatgagatttaaactacgaatcctcagtcgaaaaagtgcgtcagga
gi|4 : tctaggcttttttatttgtgggttaaggacccctataataatattttaagggtcccaacctattaggcatcatgctgatctgataaggctttttattttttattgcaaccttttattcgtgaagacaggtgtcacaacccagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaatgaccttcttttagaagaatttaaaaatcatcaatattaaaaaaaatcccaaaaccttttcatggcattcctcatttatttacatttccttatattaaagctcaatatcaacaagaattttccgtcatgcctggcttatttgcaaagcttataaatcgcgaatactgattacattacgtacaatagtagactgttcatttgcaaaacaaatcactgatgctt----------------ACT----------------TT-----TCCGTCATGCCTGGCTTATTTGCAAAGCTTCTTAATTGCGAATACAGATGACATTATGTAATTACGTATAA--CAGTA--CTGTTCATTTGCAATACA----AATTCACTGATGCTTACTATG-CA-AGCGAT-----TGG--TC-ATTGTAATAATA------ATTTACAA-TATAGACTTAAA---AAAATATGAAAA--AGACAA--ACATAATTGCGTTAAAACACATTTTATATCAA-AAATTTCAACAACTCTCAGATT--CTC--ACAACACTTGTCACGTGATCAATAACGGTGTATA-C-GTAAACAAATGGTAGTGCATATGATCCGCTACATGCAGTTC-TATGTTGGGAAAACACTTTGGTGGAAAATAACA---------AA----AACATCACGATTTTGATGGAATTGTTGCAATAAAAGCAAATGTATATCTC-C-AAATATTTTCTTTGGTTTCTTTTCCTTTTGAAAGTAGGAATTTTGTTCATTTGGATGGGAAAAGGAAAGGAATAAACGGCACTGCTTTTTTGCAGAAACGTGTCCA-G---------------------------GAGTCCTTGGTCG---ATCTGCATCA-GTGACGC--AAGAAAAACTCAGGACTGTGTTCAGTTTGAT
gi|5 : caggTCTTTCCCTTTTGAAATTAGGAATTTTGTTACTTTGGATGGTAAAAGGAAAGGAATGAACTACATTGCTTTTTTGCGGAAACGTGTACC-GAAAGTAATG----GAATTAAAAAT-ACAAGTCCTCGGTCAAAAATGT---T-----GACGCAAAAAAAAAAACCAGG-----GCTGCGTTCAGTTAAAC
gi|5 : GACTACCATTTTGAGATGTTCCCATGAGCACAGGCGCTTTATAATGCTTTATACCTCATAAGCGTCTCCATGATGTTTGATGAAGGAGCGGAAAGGCATCGAATGAAAGCAAAGAGAAAAAATT-TAACAAATT-TTTTTTCCACAA--------AAAAAGGTTATGGTTGGGGCTAAAAAAAATAGGGTTGGTCAGAATACTGGAAACAAACATATATATTTTTTAGGCCTgtttgataacgttggctaacatatgtttctgtacactgactctaactcataatagcacgcagttgcgataatgttagggcaccaggcattaaacctgtttgtcggtgaggaacacatatagactaccattttgagatgttcccatgagcacaggcgctttataatgctttatacctcataagcgtctccatgatgtttgatgaaggagcggaaaggcatcgaatgaaagcaaagagaaaaaatttaacaaattttttttccacaaaaaaaggttatggttggggctaaaaaaaatagggttggtcagaatactggaaacaaacatatatattttttaggcctgaatggtatgggaatttaaaactatttccttttcgtaattattaacttt
gi|6 : tctttcccttttgaaattaggaattttgttactttggatggtaaaaggaaaggaatgaactacattgcttttttgcggaaacgtgtaccgaaagtaatggaattaaaaatacaagtcctcggtcaaaaatgttgacgcaaaaaaaaaaaccagggctgcgttcagttaaacgtttgataacgttggctaacatatgtttctgtacactgactctaactcataatagcacgcagttgcgataatgttagggcaccaggcattaaacctgtttgtcggtgaggaacacatataGGTTTTTC-----A-TTTGTGGGT-T-AAGGACCACTACAATAATATTTTTA---------------------A---------------------G--------------------GGTCCCAA----------------------A-CTATTAGGC----ATCATGCTGATCTGATGA-G-----------GCTTT-----T-TATT-GCAACCTTTTATTCATAATGAAAGACAG-CT-GTCAGCTGTAAAAT--CACAA-CCCAgaatggtatgggaatttaaaactatttccttttcgtaattattaacttt
gi|6 : AAAA-GGTGACCTTCTTTTAGAAGACGT--TAAAAA-TCATCAA-TATTGAAAAAAAGT--CCCAAAACCTTTGAATGAC---TCCTCATTTATTTACATTCC----ATTATA---ATAAA----------------GCT----------------tannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaaggtgaccttcttttagaagacgttaaaaatcatcaatattgaaaaaaagtcccaaaacctttgaatgactcctcatttatttacattccattataataaagctcaatatccataaga
gi|7 : ggtttttcatttgtgggttaaggaccactacaataatatttttaagggtcccaaactattaggcatcatgctgatctgatgaggctttttattgcaaccttttattcataatgaaagacagctgtcagctgtaaaatcacaacccatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGGTTTTCCTTAGGA-TTTG-GGGT-TCAAGAACCGCTCCAATAATA-TTTTAACTGTCCCCAAAACCAATTTTA---------------------G--------------------GGT-CCGG----------------------A-CTATTAGAC----ACCATTCTGATCTG-CAGTG-C---C-TTTTTTATT-----T-TATTGGCATCATTTTATTCAT----GAA-------------------------CACAA-CCCAGCAGGGTTATTGCTGCTTGCATATTTGGAAATGACTCGATGAGGTTGAAAAAAcaatatccataaga
gi|7 : aAGAA-TGTGATTCTCATGCAGAAGGTTTCCTT--AA-TCAT-AA-TTTT---GAAAAATA-CCCAA-----TACCACGACAGTTCTTTTTCTGTTT-TATTTaaatgctttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaatgtgattctcatgcagaaggtttccttaatcataattttgaaaaatacccaataccacgacagttctttttctgttttatttgtaatatattttttttataact
gi|8 : agggttttccttaggatttggggttcaagaaccgctccaataatattttaactgtccccaaaaccaattttagggtccggactattagacaccattctgatctgcagtgccttttttattttattggcatcattttattcatgaacacaacccagcagggttattgctgcttgcatatttggaaatgactcgatgaggttgaaaaaaaaatgctttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGATTTTTC-----A-TTTGGGGGT-CCAAGGACCCATACAATAATG-TTTTA---------------------A---------------------G--------------------GGT-TCAAATACCAATTTTGGTGGTCACCGA-CTATTAGAC----ATCATGCTGATCTgtaatatattttttttataact
gi|8 : tatatgttattatgtacagggttttcccta--CACAAACCCAGCAGGGTTCT---TGCTTGCATATTTGGGA--------ATGAGGATGGAAAAATGACATTACCCACGGTCCTT-CAACATACATAAC-----AATATGTGTTTTAAGTATAAAAA-TAAGATTCTCATGTAGAAGGCCTTCTC--AA-TCAT-AA-TTTT---AAAAAGTA-CTCAAAACTGTGTCATGACA-TTTGTAATTCATTT--ATCTTAAAGCTCAAACCCCCAAA----------------ACT----------------TT-----TACATCATGCCTtcatgaacacaaacccagcagggttcttgcttgcatatttgggaatgaggatggaaaaatgacattacccacggtccttcaacatacataacaatatgtgttttaagtataaaaataagattctcatgtagaaggccttctcaatcataattttaaaaagtactcaaaactgtgtcatgacatttgtaattcatttatcttaaagctcaaacccccaaaacttttacatcatgcct
gi|9 : tatatgttattatgtacagggttttccctaggatttttcatttgggggtccaaggacccatacaataatgttttaagggttcaaataccaattttggtggtcaccgactattagacatcatgctgatcttcatgaaA----------------ACT----------------TC-----TTTG----GTCTG--TTACATGTAAAGATTCCAAATCGCGAATATAGATGACATTAAGTAA--------AG--CAGT-GGCTTCTCGTTTACAGTATG----AATTCACAGACG-TTATT-TG--A-AATAAA-----TGA--TC-ATTGTAACAGTA------ATTTATGT-TACATACT-AAT---TAAGTACAAAAATTACAAAA--GTA-AACTACATTAAAACATATTTTAG-TTGATAAA-TTCAG----TCTTGGG-----TC--A--AT--T---------ACCCATAACAGTGT-TG-AGGTAAACAAACACTAGTGCATATGATTCAATATGTCCGATCCAGACATGGACAAAACA-TTTGGT------TTAC----------AA----AACATTGCGAT