lowQualScore : 1 111
lowQualScore : 1 4 888 555 555 44 3 3 6 3 6 1
lowQualScore : . . ... ... ... .. . . . . . .
lowQualScore : 5 8 333 000 999 11 1 1 2 6 0 2
consensus : CAGGCTTCTGTTTCACCAACA--TTTT---CTT--AAG-TTTTACTTAAATAC-T-T-AAAA-CTTAACTTAATTTTGAC
Reference ( gi|2 ) : CAGGCTTCTGTTTCACCTACA--CTTT---CTG--AAA-TTTTACTTAAATAC-T-T-AAAA-CTTAATTTAATTTTGACAGGTTATGTAAGAATTCTGTAATCAATAT
gi|10 : CAGGCTTCTGTTTCACCAAGA--TTTT---CTT--AAAGTTTTACTTAAATAC-C-T-AA
gi|9 : CAGCCTTCTGTTTCACCAACA--CTTT---TAT--AAC-TTTTACTTAAATGT-T-T-AAAA-
gi|1 : CAGGCTTCTGTTTCAACAACA--TTTC---TTC--AAG-CTTTACTTTTATAC-TAA-AAAA-CTGAACTCAATTTTGAC
gi|6 : catCAGGCTCCTGTTTCCCCAACAGTTTTT---TTT--AAA-TTTTACTTATATACTT-T-AAAA-CTTttgtaatctaatattaatgtatatccaacatcgatgaaaccataagttgttttaataaccagtctaaaatcaagccatctcagcaagctgctttctgagatttaagcagttaagtttatacttaaccatgttggtgaaacaga
gi|8 : cCAAGCTTCCGTTTCA---ACA--TTTTTTTCTC--AAG-TTTTACTTAAATAT-G-C-AAAA-CTT
gi|13 : GGCTTCTGTTTCACTTATA--TTTT---CTA--AAA-TTTTACTTAGATA--T-T-AAAA-
gi|11 : GGCTTCTGTTACACCAACA--TTTC---CTT--ATG-TTTTACTTAAATAC-T-T-CAAA-
gi|16 : GGCGTCTGTCTCACCAACA--CTTT---CTT--AAA-TTTTATTTAAAa
gi|12 : ccGGGTTCTGTTTCACAAGCA--TTTT---TTGTTAAG-TTTTACTTAAATAT-T-T-AAA
gi|14 : GCTTCTGTGTCACCAATA--ATTT---CTA--AAG-TTTTACTTCAATAC-A-T-AAAA-
gi|3 : TTCAGCAACA--TTTA---CTT--AGG-TTTTACTTAAATAC-T-TAAAAA-CTTAACTTGATTTTGAC
gi|4 : gTCAGCAACA--TTTA---CTT--AGG-TTTTACCTAAATAC-T-TAAAAA-CTTAACTTAATTTTGACtgt
gi|15 : TCAGCAACA--TTTT---CTT--AAG-TTTTTCTTAAATAC-T-T-AAAA-ATTtg
gi|5 : ccACG--TTTT---CTT--AAA-TTTTACTTAAATAC-T-T-AAAAGCTCAACTAAATTGTGAC
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): CCTTAAATAGTTTTTTTTCATGTGCTTTGACTGGTTACTGATCTGCTCAGTGATC
Alignments
lowQualScore : 33 3333 2 2 2 5 3
lowQualScore : .. .... . . . . .
lowQualScore : 44 6666 5 7 7 3 1
consensus : CAGGCTTCTGTTTCACCAACA--TTTTCT--T-AAGT-TTTACTTAAATAC-T-T-AAAA-CTTAACTTAATTTTGAC
Reference ( family-12318 ) : CAGGCTTCTGTTTCACCAACA--TTTTCT--T-AAGT-TTTACTTAAATAC-T-T-AAAA-CTTAACTTAATTTTGAC
gi|1 : CAGGCTTCTGTTTCAACAACA--TTTCTT--C-AAGC-TTTACTTTTATAC-TAA-AAAA-CTGAACTCAATTTTGAC
gi|1 : catTCTGTTTCACCAACA----TGGT--T-AAGTATAAACTTAACTGC-T-T-AAAT-CTCAttgtaatctaatattaatgtatatccaacatcgatgaaaccataagttgttttaataaccagtctaaaatcaagccatctcagcaagctgctttctgagatttaagcagttaagtttatacttaaccatgttggtgaaacaga
gi|10 : catcaggcttctgtttcaacaacatttcttcaagctttacttttatactaaaaaactgaactcaattttgacttgtaatctaatattaatgtatatccaacatcgatgaaaccataagttgttttaataaccagtctaaaatcaagccatctcagcaagctgctttcCAGGCTTCTGTTTCACCAAGA--TTTTCT--TAAAGT-TTTACTTAAATAC-C-T-AA
gi|11 : GGCTTCTGTTACACCAACA--TTTCCT--T-ATGT-TTTACTTAAATAC-T-T-CAAA-
gi|12 : GGGTTCTGTTTCACAAGCA--TTTTTTGTT-AAGT-TTTACTTAAATAT-T-T-AAAa
gi|13 : GGCTTCTGTTTCACTTATA--TTTTCT--A-AAAT-TTTACTTAGATA--T-T-AAAA-
gi|14 : GCTTCTGTGTCACCAATA--ATTTCT--A-AAGT-TTTACTTCAATAC-A-T-AAAA-
gi|15 : TCAGCAACA--TTTTCT--T-AAGT-TTTTCTTAAATAC-T-T-AAAA-ATT
gi|16 : ccGGCGTCTGTCTCACCAACA--CTTTCT--T-AAAT-TTTATTTAAA
gi|2 : ccCAGGCTTCTGTTTCACCTACA--CTTTCT--G-AAAT-TTTACTTAAATAC-T-T-AAAA-CTTAATTTAATTTTGAC
gi|3 : TTCAGCAACA--TTTACT--T-AGGT-TTTACTTAAATAC-T-TAAAAA-CTTAACTTGATTTTGACaggttatgtaagaattctgtaatcaatat
gi|4 : gTCAGCAACA--TTTACT--T-AGGT-TTTACCTAAATAC-T-TAAAAA-CTTAACTTAATTTTGACtgt
gi|5 : ACG--TTTTCT--T-AAAT-TTTACTTAAATAC-T-T-AAAAGCTCAACTAAATTGTGACtg
gi|6 : tctcagCAGGCTCCTGTTTCCCCAACAGTTTTTTT--T-AAAT-TTTACTTATATACTT-T-AAAA-CTTtg
gi|8 : cCAAGCTTCCGTTTCAACATTT--TTTTCT--C-AAGT-TTTACTTAAATAT-G-C-AAAA-CTT
gi|9 : CAGCCTTCTGTTTCACCAACA--CTTTTA--T-AACT-TTTACTTAAATGT-T-T-AAAA-
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CCTTAAATAGTTTTTTTTCATGTGCTTTGACTGGTTACTGATCTGCTCAGTGATC
Alignments
lowQualScore : 33 3333 2 2 2 5 3
lowQualScore : .. .... . . . . .
lowQualScore : 44 6666 5 7 7 3 1
consensus : CAGGCTTCTGTTTCACCAACA--TTTTCT--T-AAGT-TTTACTTAAATAC-T-T-AAAA-CTTAACTTAATTTTGAC
Reference ( family-12318 ) : CAGGCTTCTGTTTCACCAACA--TTTTCT--T-AAGT-TTTACTTAAATAC-T-T-AAAA-CTTAACTTAATTTTGAC
gi|1 : CAGGCTTCTGTTTCAACAACA--TTTCTT--C-AAGC-TTTACTTTTATAC-TAA-AAAA-CTGAACTCAATTTTGAC
gi|1 : catTCTGTTTCACCAACA----TGGT--T-AAGTATAAACTTAACTGC-T-T-AAAT-CTCAttgtaatctaatattaatgtatatccaacatcgatgaaaccataagttgttttaataaccagtctaaaatcaagccatctcagcaagctgctttctgagatttaagcagttaagtttatacttaaccatgttggtgaaacaga
gi|10 : catcaggcttctgtttcaacaacatttcttcaagctttacttttatactaaaaaactgaactcaattttgacttgtaatctaatattaatgtatatccaacatcgatgaaaccataagttgttttaataaccagtctaaaatcaagccatctcagcaagctgctttcCAGGCTTCTGTTTCACCAAGA--TTTTCT--TAAAGT-TTTACTTAAATAC-C-T-AA
gi|11 : GGCTTCTGTTACACCAACA--TTTCCT--T-ATGT-TTTACTTAAATAC-T-T-CAAA-
gi|12 : GGGTTCTGTTTCACAAGCA--TTTTTTGTT-AAGT-TTTACTTAAATAT-T-T-AAAa
gi|13 : GGCTTCTGTTTCACTTATA--TTTTCT--A-AAAT-TTTACTTAGATA--T-T-AAAA-
gi|14 : GCTTCTGTGTCACCAATA--ATTTCT--A-AAGT-TTTACTTCAATAC-A-T-AAAA-
gi|15 : TCAGCAACA--TTTTCT--T-AAGT-TTTTCTTAAATAC-T-T-AAAA-ATT
gi|16 : ccGGCGTCTGTCTCACCAACA--CTTTCT--T-AAAT-TTTATTTAAA
gi|2 : ccCAGGCTTCTGTTTCACCTACA--CTTTCT--G-AAAT-TTTACTTAAATAC-T-T-AAAA-CTTAATTTAATTTTGAC
gi|3 : TTCAGCAACA--TTTACT--T-AGGT-TTTACTTAAATAC-T-TAAAAA-CTTAACTTGATTTTGACaggttatgtaagaattctgtaatcaatat
gi|4 : gTCAGCAACA--TTTACT--T-AGGT-TTTACCTAAATAC-T-TAAAAA-CTTAACTTAATTTTGACtgt
gi|5 : ACG--TTTTCT--T-AAAT-TTTACTTAAATAC-T-T-AAAAGCTCAACTAAATTGTGACtg
gi|6 : tctcagCAGGCTCCTGTTTCCCCAACAGTTTTTTT--T-AAAT-TTTACTTATATACTT-T-AAAA-CTTtg
gi|8 : cCAAGCTTCCGTTTCAACATTT--TTTTCT--C-AAGT-TTTACTTAAATAT-G-C-AAAA-CTT
gi|9 : CAGCCTTCTGTTTCACCAACA--CTTTTA--T-AACT-TTTACTTAAATGT-T-T-AAAA-
blockSeqs : GT GTT A T . A G
blockSeqs : . TA . . . A .
blockSeqs : . T . . . . .
blockSeqs : . T . . . . .
blockSeqs : . A . . . . .
blockSeqs : . A . . . . .
blockSeqs : . T . . . . .
blockSeqs : . T . . . . .
blockSeqs : . G . . . . .
blockSeqs : . T . . . . .
blockSeqs : . T . . . . .
blockSeqs : . T . . . . .
blockSeqs : . T . . . .
blockSeqs : . C . . . .
blockSeqs : . T .
blockSeqCons :
originalCons : CAGGCTTCTGTTTCACCAACA--TTTTCT--T-AAGT-TTTACTTAAATAC-T-T-AAAA-CTTAACTTAATTTTGAC
finalCons : CAGGCTTCTGTTTCACCAACA--TTTTCT--T-AAGT-TTTACTTAAATAC-T-T-AAAA-CTTAACTTAATTTTGAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CCTTAAATAGTTTTTTTTCATGTGCTTTGACTGGTTACTGATCTGCTCAGTGATC
Alignments
lowQualScore : 33 3333 2 2 2 5 3
lowQualScore : .. .... . . . . .
lowQualScore : 44 6666 5 7 7 3 1
consensus : CAGGCTTCTGTTTCACCAACA--TTTTCT--T-AAGT-TTTACTTAAATAC-T-T-AAAA-CTTAACTTAATTTTGAC
Reference ( family-12318 ) : CAGGCTTCTGTTTCACCAACA--TTTTCT--T-AAGT-TTTACTTAAATAC-T-T-AAAA-CTTAACTTAATTTTGAC
gi|1 : CAGGCTTCTGTTTCAACAACA--TTTCTT--C-AAGC-TTTACTTTTATAC-TAA-AAAA-CTGAACTCAATTTTGAC
gi|1 : catTCTGTTTCACCAACA----TGGT--T-AAGTATAAACTTAACTGC-T-T-AAAT-CTCAttgtaatctaatattaatgtatatccaacatcgatgaaaccataagttgttttaataaccagtctaaaatcaagccatctcagcaagctgctttctgagatttaagcagttaagtttatacttaaccatgttggtgaaacaga
gi|10 : catcaggcttctgtttcaacaacatttcttcaagctttacttttatactaaaaaactgaactcaattttgacttgtaatctaatattaatgtatatccaacatcgatgaaaccataagttgttttaataaccagtctaaaatcaagccatctcagcaagctgctttcCAGGCTTCTGTTTCACCAAGA--TTTTCT--TAAAGT-TTTACTTAAATAC-C-T-AA
gi|11 : GGCTTCTGTTACACCAACA--TTTCCT--T-ATGT-TTTACTTAAATAC-T-T-CAAA-
gi|12 : GGGTTCTGTTTCACAAGCA--TTTTTTGTT-AAGT-TTTACTTAAATAT-T-T-AAAa
gi|13 : GGCTTCTGTTTCACTTATA--TTTTCT--A-AAAT-TTTACTTAGATA--T-T-AAAA-
gi|14 : GCTTCTGTGTCACCAATA--ATTTCT--A-AAGT-TTTACTTCAATAC-A-T-AAAA-
gi|15 : TCAGCAACA--TTTTCT--T-AAGT-TTTTCTTAAATAC-T-T-AAAA-ATT
gi|16 : ccGGCGTCTGTCTCACCAACA--CTTTCT--T-AAAT-TTTATTTAAA
gi|2 : ccCAGGCTTCTGTTTCACCTACA--CTTTCT--G-AAAT-TTTACTTAAATAC-T-T-AAAA-CTTAATTTAATTTTGAC
gi|3 : TTCAGCAACA--TTTACT--T-AGGT-TTTACTTAAATAC-T-TAAAAA-CTTAACTTGATTTTGACaggttatgtaagaattctgtaatcaatat
gi|4 : gTCAGCAACA--TTTACT--T-AGGT-TTTACCTAAATAC-T-TAAAAA-CTTAACTTAATTTTGACtgt
gi|5 : ACG--TTTTCT--T-AAAT-TTTACTTAAATAC-T-T-AAAAGCTCAACTAAATTGTGACtg
gi|6 : tctcagCAGGCTCCTGTTTCCCCAACAGTTTTTTT--T-AAAT-TTTACTTATATACTT-T-AAAA-CTTtg
gi|8 : cCAAGCTTCCGTTTCAACATTT--TTTTCT--C-AAGT-TTTACTTAAATAT-G-C-AAAA-CTT
gi|9 : CAGCCTTCTGTTTCACCAACA--CTTTTA--T-AACT-TTTACTTAAATGT-T-T-AAAA-
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CCTTAAATAGTTTTTTTTCATGTGCTTTGACTGGTTACTGATCTGCTCAGTGATC