lowQualScore : 111111111111111 222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111
lowQualScore : 33 4444 111 11 1 111 1 1 111111111 1 1 22222 444444444 2222 333333333333333 333 1 111 222 111 1 11 333 1 888888888888888888888888888888888888888888888888888888888888888 111 4444444444444 11 1111 666666 55555 1 222222222 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 4444444 333333333333 1111111111111111111111111111111111111111 1 11 11111
lowQualScore : 5 5 11 2 8 5 6666 222 8 55 2 3 2 2 33 7 33 4 666 2 8 7777 3 1 7 3 7 999999999 1 55 0 22222 444444444 9 4 1111 5 66 3 000000000000000 5 999 0 6 1 6 888 0 444 7 111 1 2 2 5 6 77 4 3 888 11 2 0 444444444444444444444444444444444444444444444444444444444444444 6 9 6 7 888 7777777777777 6 6 88 22 9999 111111 00000 6 2 5 0 1 66 3 6 777777777 0 3 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 77 2 1 6 2 5 8888888 888 6 111111111111 6 3333333333333333333333333333333333333333 0 11 66666 5
lowQualScore : . . .. . . . .... ... . .. . . . . .. . .. . ... . . .... . . . . . ......... . .. . ..... ......... . . .... . .. . ............... . ... . . . . ... . ... . ... . . . . . .. . . ... .. . . ............................................................... . . . . ... ............. . . .. .. .... ...... ..... . . . . . .. . . ......... . . ................................................................................................... .. . . . . . ....... ... . ............ . ........................................ . .. ..... .
lowQualScore : 7 7 66 7 7 3 0000 222 0 66 7 7 5 7 77 3 77 9 888 4 8 1111 3 7 3 6 8 111111111 0 66 6 77777 555555555 1 0 1111 5 99 1 000000000000000 7 000 7 4 9 0 555 7 777 8 000 0 5 5 0 0 55 0 7 000 77 0 7 777777777777777777777777777777777777777777777777777777777777777 0 0 7 7 000 0000000000000 0 0 55 00 5555 555555 00000 0 5 0 7 0 77 7 0 333333333 7 2 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 44 3 6 0 7 4 7777777 888 0 111111111111 0 4444444444444444444444444444444444444444 8 11 88888 0
consensus : ACTCAACCGA-T-TNAGAAA-CGCAAAGGTTGTACAATGATGATT-TTN--A-CAGTGTTAACAC-ANTTCA-A--ATTTATT--CAAATTTCATA--CACAACAATAACAA----TA-TAAAACGCATAATCTGTGCA-AATTTCATTGATA------TATCGCAANAAAATGGGCACAT-AACAACGTT-CTG-AATACCATCGGTGCTTCATGT-CAAAT-TCACAAATTAATAC--CGCGTGTATGATCCCC--------CGCTCG-CAA--TACAGGCTAGACATCTACGCCTCATAGACGACACTATGGTAGCTACACGACCTTGTGGAATGTTNTTCCACTNATGAACGAGNGCATCGCGTAACTCTCTGACGTTTCTTGGCTGAGGTACGC-------------GGA------CA-----------A-----------G--AG-TC---NC---AGACATGCTCAATAGGAGCAATGTCTGGGGATNACACAGGCCAACCCATCACTTAAACGTTGTTTGTCTGAAGGTAAGCANTCGCCCTCCGNTCGCGAT-GTGCAGGGGCATCAAGTTATCATGTTGNTAGATTTCACCAGCGCGTGGAAAATGGCGCTTCGCGAATGGCA-T-GGA-A-CGGGAACTAG--C---------AT-----GTACACGA-GTCGTGNAGCTACCATAG------TGT-CGTC--TATGAG--GCG-----------TAGATGTCTAG-CTGTATTG-CGAGCGGGGGATCATACACGCGGT-ANTAAT---TTGTGAATTT-GACATGAAGCACCGATGGTATTCAG--------GAC-------GTTGT-T-----CCAT------TTATTGCGATATATCAATGAAATTTGCACAGATTAT
Reference ( gi|1 ) : ACTCAACCGA-T-TC-GAAA-CGCAGAGGTTGTACAATAATGCTTATTT--A-CAGTGTTGGCAC-ATTTCA-A--ATTCATT--CAAACTTCATT--CACAACAAAAACAA----TA-TAAAGCGCATAATCTGTTCA-AATTCCATTGTTA------TATCGCAAAAAAATGGGCATAT-TACAACG-C-CTT-ATTACCGTCGGTGCTTCATGT-CAGTT-TCACAAATTAATAC--CGCATGTATCACCCCCAACACCCACACTCG-CAATTTACAGGCAAGACATCTACGTCCCATTAACGACACTGCTGTAGCTATACGACTTTGCGGAATATTGTTCCACTCATTAATGAGGCCATTGCGTAACTTAATGACATTTCTTGGCGGAGGCACAC-------------GGA------CA-----------A-----------G--AG-TC---CT---AGATATGCCCAATAGGAGCCATGTCTGGGGATAACATGAGCCATTCCATCACTAAAACGTTGCTTGTCTGAAGGCAAGCAGCCGTTTTCCGTGCGCAATTATACTGGGGCAT-----TATTATGTTGGTAGATTTCACCAGCACTTGGGAAATGACGCCCCACGAATGACA-T-GGC-A-CGGGAACTAG--C---------AT-----GTACATA--GTTATTAAGCTGGCATAG------TAG-CGTT--TATGAG--TCG-----------TA-------------TATTG-TGAGTGGGTGATCGTACATGCAGC-TCTGGT---TTATGAATAT-GATAAGAATCACCGATGGTACTCAG--------GGC-------GCTAT-------CTATA-----TTATGGCGGCATATCAATTAACTTTGCACAGACTATA
gi|2 : ACTCAACCGA-T-TAAGAAA-CGCA--------------AT-----TTT--AGCAGTGTTATCAC-AATTGA-A--ATTTATTTTCAAATGTCATA--CACAACAATAACAC----TA-TAAGACGCGTAATCTGTGCATAA--CCATTGATA------TATCGC-AATAAATGGGCACAT-AACATCGTC-CCA-AATACC-------------AT-CAAAT-TCACAAACTGATAC--CGCATGTATTATTCCC--------CGCTCGTC--TTTA--------------ACGCCTCA-TACCAGCACTATAGTAGTTACACGATCTTG
gi|9 : atgaataccatcggtgcctcgtgtcaaaaaccacaaatatgtaccccatgtattatgccccactcgcaatacaggctagacatctacgtctcacagacaacgccatggtagctgcacgacgttgtggaatgctgttccactcatgaacgagtgcattgcgtaactctctcatgtttcttggctgaggtacactggcagtgatcccagacatactcattagaagcaagtctttccagacatgttcaataggagcaatgtttgaagattatacagactaacccatcacttaaacgttgtttgtctgaaggtaagcattcgccctcagttcgcgatgtgcagggcattatcatgttgttggatttcaccagcacgtggaaaatgacgcctcaggaatggcattgaaacgggaactagcacgttaatgaaATTTAACCGACT-TA-AAAA-CGCAAAGGTTATACAGTGATGG--ATTT--AACTGTGTT------ATTACA-A-----CATT--CAAATTTCTTT--CACAACAAAAACGA----TA-TAAAACGGATAGTATTTGCA-ACGTTCTTTGATA------TATCT--AAAAAATAGTCACGT----AACGTC-CTG-AATACCATCGATGTTTCATTTCCAATT-T
gi|16 : caatgaatggggcacgtaacaaggcacACTCAACCGA-TATA-GAAA-CGCAAAGGTCGTATGATGATGATT-TTA--A-CAGTATTTACAC-AATTCA-A--ATTCATT--C
gi|17 : cACTCAACCGACT-TA-GAAA-CGCAAAGATTGAAC
gi|14 : CTCAACCGA-T-TTAGAAA-CGCAAAGGTTGTACACTGATGAT--TTT--A-AAATGTTTACAT-AGTACA-C--ATTTAGT--CAAATT---TG--CACAATAAAAATAg
gi|3 : TCGATCGA-T-TTAGAAG-TGCAAAGGTTGTACAACAACAATTTTTA--A-CATTGTTAACA-------G-A--ATTTATT--TAAATTTCATA--TATAACAATAGCAA----CA-TAAGATGCACAATCTGTGCA-AATTCCATTGATA------TGTCGCAATAAA-TGGGCA-ACATACATTG-TTCTG-GATATCATCGGTTCTTCATGC-CAAAT-TCACAAATTAATAC--CGTTTGCATGATCCCC--------CACTCA-TAA--TACTGGCTAGACTTCTACACCTCATAGACAATACTATGGTAGCTACACAGCCTTG
gi|5 : ggcatggtgtaattctctgacatttcttggcaaaggcaaacgggcacactctcagacatgctctataggagcaatgtctggggatcacacaggccaatcaatgttgtttgtttgaaggtaagcagtcatcctccaattgcaatgtgcaggggcatcaagttatcatgttagtagatttcaccagcatgtgggaaatggcacttcatgcagggcattggcaacaggaactaacacatggttaatgtaTTAACCAA-T-TTAGAAA-TGCAAAGGTTGTACAATGATGA--GTTT--AGCAGTGTTAACAC-AATTCA-A--ATTGATT--CAAATTTCATG--CACAACAATAACTACATGTA-TAAAATGCATACCCTGTGCC-AATTTCATTG--A------TATAGCAATAAAA-GGGCACAA-AACAACG-TATTT-AATGTCATCAGTTCTTCA-----AA-T-TCACAATTTACTAC--CGTGTGTATGATCCTC--------TGCTCG-CAA--TACAGGCTAATCATCCAAGCCTCGTAGAAGACACTGTGGAAGCTATACAACCTTGTG---TATT
gi|10 : agattccaccaacgcgtaaaaaatggtgcttcgcaaatggcatggaaacaggaactagtacattgttTCAACCGA-TGTA-GAAA-CGCAAAGGTTGTACAATGATGATT-TTA--A-TACTGTAAACACCATT--ATA--ATTTATT--CAAATTTCA-------------AACAA----TA-TAAAACGCACAAACAAGGGA-AATTTCATAGATA------TGTCGCAATAAA-TTGGCACAT-AATAAAG-TTCTG-AATGCCATCAATGCTTCATGT-CAGAT-TAACA
gi|15 : taggCAACCAA-T-TT-AAAAACGCAAAGGGTGTACAATAATGATT-TTA--A-CAGTATTGACAC-A-------------ATT--CAAATTTCATA--CACAATAA
gi|4 : AACCAA-T-TTAGAAA-TGCAAAGTTTGTACAATGATG---ATTTCAA-CAGTCTTAACAA-ATTTCA-A--ATTTATT--CAAATTTCATA--CACAGGAATTCCAA----TA-TGAAACACATAATCTGTGCA-AATTTCATTGACA------TATCGCAATAAA-TGGGCACAT-AACAACGTC-CTC-AATACCATCAGTGCTTCATGT-CAAAT-TCACAAATT-ATAC--TGCTTGTATGAT------CACC--CACTCG-CAA--CACAGACCAGACATCTACGTCTCACAGACAACACTATGGTAACTGTATGACCTTGTTGAATGTTTTTTCACTAATGAACGAGGGCACCGAGTAACTCTCTGATGTTTATAGACTGAGGTACGC---------------ATCATCTCA-----------AGCCCACCATCTG--AGCTC---ATTTCAAACATGCACAATGGGAGCCATGCCTGGGTATAg
gi|6 : AACTGA-T-TTAGAAA-CACAAAGATTGTACAATGATGATT-TTA--A-CAGTGTTAACAC-A----A-A--AGTTATT--CAAATTTCATA--CACAACAATAACCA----CA-TAAAATGCATAATCTGTGCA-AATTTCATTGGTT------TATCGCAATAAA-TGGGCACAT-AACAAGG-TACTA-AATACCATCGGTGCTTCATGT-CAAAA-TCACAAATTAATAC--AGCATGTATGATCCCC--------CACTCG-CAA--TACAGCCTAAAAATCTACGCCTCATAGGCGACTCTATGATAGCTctgcagattcc
gi|11 : tAACCGA-T-TC-AAAA-CGCACAAGTTGTACAATGACG---AGTTGAA-CAGTGTTAACAC-AAGTCA-ATTATT--TT--CAACTTTTATA--CACAA-AATAACAA----TA--AAA----ATTCTCTGT--A-AATGTCATTGATA------TATCGC-CATAAATTGGCACA---GCAACG-T-TTTGAATACCATCt
gi|13 : AACCGA-T-TAAGAAC-CTCAAAGACTGTACAATGATAGTT-TTA--A-CAGTGTTAAC-C-ACTTCA-A--ATTTATT--CGAATTTCATA--CACAGCAAAGGCAA----T--TCAAATGCATtt
gi|8 : ACAGA-T-TTAGAAA-CGTAAAAGATGTACAATGAAGATT--TT--A--AGTGTTAACAC-AATTCA-A--ATTTATT--CATATTTCGTA--CACAATGATAACAA----CA-TAAAACGCACAA-----------------------------ATCGT-AATAAATGGACACAT-CACAACATC-CTG-AATACCATCAATGTTTCATGT-CAAAT-TCACAAATATATAC--CACGTACATgt
gi|12 : aggctaccacagtgtcgtctatgagccaaaattctcaaatcAA-CGCAAAGGTTGAACAATGGTGATT-TTA--A-CAGTGTTAACAC-AATTCA-G--ATCTTTT--CAAACT--GTTAAAACAGCAAAAACGA----TA-TAACACGAACAATATGTGCA-AATTACATTGATATACATGTATCGCAATAAA
gi|7 : gttagtAAAGGTTGTACAATTATAATT-TTA--A-CGGTGTTAACAC-AGTTTG-A--ATTTATT--CAAATTTAATA--CACAGGAGTAACAA----CAATAAA-CGCATAATCTATGTA-AATT------TTA------TATCAC-AATAAATGGACGCATCTA-AATGAT-CTG-AATACCATCGGTGCTCCATGT-CAAGT-TCGCAACTTAATACCACGCGTGAATGATCCGGA--------ACTTG-CA------AGGCTAGTCATCTACGTCTCATtg
gi|2 : aacggacttatagcaTACCATCGGTGCCTCGTGT-CAAAAACCACAAATATGTAC--CCCATGTATTATGCCC--------CACTCG-CAAT--ACAGGCTAGACATCTACGTCTCACAGACAACGCCATGGTAGCTGCACGACGTTGTGGAATGCTGTTCCACTCATGAACGAGTGCATTGCGTAACTCTCTCATGTTTCTTGGCTGAGGTACACTGGCAGTGATCCCAGA------CATACTCATTAGAA-----------GCAAG-TCTTTCC---AGACATGTTCAATAGGAGCAATGTTTGAAGATTATACAGACTAACCCATCACTTAAACGTTGTTTGTCTGAAGGTAAGCATTCGCCCTCAGTTCGCGAT-GTGC-AGGGCAT-----TATCATGTTGTTGGATTTCACCAGCACGTGGAAAATGACGCCTCAGGAATGGCA-TTGAA-A-CGGGAACTAG--C---------AC-----GT---TA--ATGAACAAGATCGTGTAACTACTATAG-TGCTGGTATGAG--GCG-----------T--------------TAAAGACGAGCGGGGAATAATACATGCGGT-ATCAGT---TTGTGAATTT--------------GATGGTATTTGG--------GACGAT----GTTATGTGC---CCAT------TTATTGCGATATATCAA-TGGTTATGCACAGATTAagtgatagtaataaatgta
gi|3 : atgaaCATGGTGTAATTCTCTGACATTTCTTGGCAAAGGCAAAC-------------GGG------CA-----------C--------------AC-TC---TC---AGACATGCTCTATAGGAGCAATGTCTGGGGATCACACAGGCCA----ATCA-----ATGTTGTTTGTTTGAAGGTAAGCAGTCATCCTCCAATTGCAAT-GTGCAGGGGCATCAAGTTATCATGTTAGTAGATTTCACCAGCATGTGGGAAATGGCACTTCATGCAGGGCATT-GGCAA-CAGGAACTAA--CACATGGTTAAT-----GTACAAG--GCTGTGTAGCTACCATAG------TAT-TGTC--TATGAG--GTG-----------TAGAAGTCTAGCCAGTATTA-TGAGTGGGGGATCATGCAAACGGT-ATTAAT---TTGTGAATTT-GGCATGAAGAACCGATGATATCCAG--------AACAATGTATGTTGC-------CCAT------TTATTGCGACATATCAATGGAATTTGCACAGATTGTcgcgtcttatagtgttattgttgtgtatgacatttgaaaataaatttcaattgtgataacactgctaaaattgcgtttcttaatcggttgagt
gi|5 : ggAGATTCCACCAACGCGTAAAAAATGGTGCTTCGCAAATGGCA-T-GGA-AACAGGAACTAGTAC---------ATTGTTAATACACAAGGTTGTATAGCTTCCACAG------TGT-CTTC--TACGAGGCTTGGATGATTAGCCTG-------------TATTG-CGAGCAGAGGATCATACACACGG----TAGTAAATTGTGAATTT-G--AAGA---ACTGATGACATTAAA--------TAC-------GTTGTTTTGTG-CCCTT-----TTATTGC--TATATCAATGAAATTGGCACAGGGTATgcatcttatgttgctattgttatatatgaaatttaaataaattctgttaacaatgttaaaaattgttgttgtacaacctttgcacttctaaatcgatcga
gi|2 : GGAAC-AG--C---------AT------TCCACAACGTCGTGCAGCTACCATGG------CGT-TGTC--TGTGAG--ACG-----------TAGATGTCTAGCCTGTATTG-CGAGTGGGGCATAATACATGGGGT-ACATAT---TTGTGGTTTTTGACACGAGGCACCGATGGTATTCAgcattttatacatgtagttattgttgtgcatgaaatttgaatcaatttgaattgtgttaacactgctaaactcatcattgtacaacctttgcatttctaaattggttaa
gi|4 : aACAAG--GTCATACAGTTACCATAG------TGT-TGTC--TGTGAG--ACG-----------TAGATGTCTGGTCTGTGTTG-CGAGTGGGTGATCATACAAGCAG--TATAAT---TTGTGAATTT-GACATGAAGCACTGATGGTATTGAG--------GAC-------GTTGTTATGTGCCCAT------TTATTGCGATATGTCAATGAAATTTGCACAGATTATactcatgaacgagtgcattgcgtaactctctcatgtttcttggctgaggtacactggcagtgatcccagacatactcattagaagcaagtctttccagacatgttcaataggagcaatgtttgaagattatacagactaacccatcacttaaacgttgtttgtctgaaggtaagcattcgccctcagttcgcgatgtgcagggcattatcatgttgttggatttcaccagcacgtggaaaatgacgcctcaggaatggcattgaaacgggaactagcacgttaatgaacaagatcgtgtaactactatagtgctggtatgaggcgttaaagacgagcggggaataatacatgcggtatcagtttgtgaatttgatggtatttgggacgatgttatgtgcccatttattgcgatatatcaatggttatgcacagattacgcgtcttatagtgttattgttgtgtatgacatttgaaaataaatttcaattgtgataacactgctaaaattgcgtttcttaatcggttgagt
gi|6 : aaccaatttagaaatgcaaagtttgtacaatgatgatttcaacagtcttaacaaatttcaaatttattcaaatttcatacacaggaattccaatatgaaacacAAGCTATCATAG-------AGTCGCC--TATGAG--GCG-----------TAGATTTTTAGGCTGTATTG-CGAGTGGGGGATCATACATGCTGT-ATTAAT---TTGTGATTTT-GACATGAAGCACCGATGGTATTTAG--------TACCTT----GTTATGTGC---CCAT------TTATTGCGATAAACCAATGAAATTTGCACAGATTATtgaatgttttttcactaatgaacgagggcaccgagtaactctctgatgtttatagactgaggtacgcatcatctcaagcccaccatctgagctcatttcaaacatgcacaatgggagccatgcctgggtatactgcagattcc
gi|8 : taactgatttagaaacacaaagattgtacaatgatgattttaacagtgttaacacaaaagttattcaaatttcatacacaacaataaccacataaaatgcAGGCTACCACAG------TGT-CGTC--TATGAG--CCA-----------AA--------------ATTC-TCAA------ATCATGTACGTGGTATATA-T---TTGTGAATTT-GACATGAAACATTGATGGTATTCAG--------GAT-------GTTGT-------
gi|7 : ---TTGCGAACTT-GACATGGAGCACCGATGGTATTCAGATCATTTAGAT-------GC-GT-------CCAT------TTATTGTGATATA------AAATTTACATAGATTATgatgtgtccatttattacgatttgtgcgttttatgttgttatcattgtgtacgaaatatgaataaatttgaattgtgttaacacttaaaatcttcattgtacatcttttacgtttctaaatctgt
gi|9 : aacggacttatagcaaaaggttgtacaattataattttaacggtgttaacacagtttgaatttattcaaatttaatacacaggagtaacaacaataaacgcGAAACATCGATGGTATTCAG--------GAC-------GTTACGTGA---CTATT-----TTTTA--GATATATCAAAGAACGTTGCAAATACTATcttaataccacgcgtgaatgatccggaacttgcaaggctagtcatctacgtctcatagtgatagtaataaatgta
gi|11 : caatgaatggggcacgtaacaaggcacaaattggaaatGATGGTATTCAA--------AAC-------GTTG--------CTGTGCCAATTTATGGCGATATATCAATGACATTTACAGAGAccgttttatatcgtttttgttgtgaaagaaatttgaatgttgtaataacacagttaaatccatcactgtataacctttgcgtttttaagtcggttaaat
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): GCTCTGATGGTTCCGATATCAAAGCATGGTGAC
Unaligned ( gi|19 ): TGGAGAGAGTACATGACGCAACTCTGATATTT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111111 88888888888888888888888888888888888888888888888888888888888888 1 55555 2 1 1 777777777777777777777777777777 777777777777777 33333333333 111111 777777 1 1
lowQualScore : 1 2 1 2 6 00 33 2 1 2 6666 3 999999 88 6 3 33 5 3 0 66 2 0 6666666666 8888 0 1 1 1 1 4 0 3 2 22222222222222222222222222222222222222222222222222222222222222 1 3 1 0 6 7 1 0 1 0 3 6 11111 1 2 22 0 0 0 555555555555555555555555555555 2 11 1 0 33 333333333333333 4 1 33333333333 0 0 0 888888 3 111111 0 33 7 0 0 0
lowQualScore : . . . . . .. .. . . . .... . ...... .. . . .. . . . .. . . .......... .... . . . . . . . . . .............................................................. . . . . . . . . . . . . ..... . . .. . . . .............................. . .. . . .. ............... . . ........... . . . ...... . ...... . .. . . . .
lowQualScore : 0 5 0 5 8 66 44 7 5 0 5555 3 666666 33 7 6 55 6 6 8 11 7 1 9999999999 6666 1 1 0 0 0 2 2 5 0 55555555555555555555555555555555555555555555555555555555555555 2 0 0 7 7 7 0 7 0 7 3 7 00000 0 0 22 0 0 0 000000000000000000000000000000 0 22 2 8 55 222222222222222 2 0 22222222222 2 2 2 888888 2 222222 0 22 0 8 0 8
consensus : ACTCAACCGATTTAGAAACGCAAAGGTTGTACAATGATGATT-TTAA-CAGTGTTAACACAATTCAAATTTATT--CAAATT-TCATACACAACAATAACAA----TATAAAACGCATAATCTGTGCA-AATTTCATTGATA------TATCGCAATAAAATGGGCA-CATAACAACGTCCTGAATACCATCGGTGCTTCATGTCAAAT-TCACAAATTAATAC--CGCGTGTATGATCCCC--------CACTCGCAAT--ACAGGCTAGACATCTACGCCTCATAGACGACACTATGGTAGCTACACGACCTTGTGGAATGTTGTTCCACTCATGAACGAGGGCATCGCGTAACTCTCTGACGTTTCTTGGCNGAGGCACAC-------------GGA------CA-----------A-----------G--AG----TCT---CAGACATGCTCAATAGGAGCNATGTCTGGGGATNACACGGGCCAATCCATCACT-AAACGTTGTTTGTCTGAAGGTAAGCAGTCGTCCTCCGTTCGCGA-TGTGCAGGGGCA-----TTATCATGTTGGTAGATTTCACCAGCACGTGGGAAATGGCGCCTCACGAATGGCATTGG-AA-CGGGAACTAGC---------A---TGTTAAT--ACANGAG-TTGTGTAGCTACCATAGTGTCGTCTATGAGGCGTAGA-G-CTAGC-C-GTATTGCGAGCGGGGGATCATACACGCGGTATTAGTTTGTGAATTTGGCATGAAGAACCGATGGTATTCGGGAC---GT-TGTTNCGTGCCCAT-TTATTGCGACATATCAATGAAATT-TGCACAGATTAT
Reference ( family-12260 ) : ACTCAACCGATTNAGAAACGCAAAGGTTGTACAATGATGATT-TTNA-CAGTGTTAACACANTTCAAATTTATT--CAAATT-TCATACACAACAATAACAA----TATAAAACGCATAATCTGTGCA-AATTTCATTGATA------TATCGCAANAAAATGGGCA-CATAACAACGTTCTGAATACCATCGGTGCTTCATGTCAAAT-TCACAAATTAATAC--CGCGTGTATGATCCCC--------CGCTCGCAAT--ACAGGCTAGACATCTACGCCTCATAGACGACACTATGGTAGCTACACGACCTTGTGGAATGTTNTTCCACTNATGAACGAGNGCATCGCGTAACTCTCTGACGTTTCTTGGCTGAGGTACGC-------------GGA------CA-----------A-----------G--AG----TCN---CAGACATGCTCAATAGGAGCAATGTCTGGGGATNACACAGGCCAACCCATCACTTAAACGTTGTTTGTCTGAAGGTAAGCANTCGCCCTCCGNTCGCGA-TGTGCAGGGGCATCAAGTTATCATGTTGNTAGATTTCACCAGCGCGTGGAAAATGGCGCTTCGCGAATGGCA-TGG-AA-CGGGAACTAGC---------A---TGT------ACACGAG-TCGTGNAGCTACCATAGTGTCGTCTATGAGGCGTAGATGTCTAGC-T-GTATTGCGAGCGGGGGATCATACACGCGGTANTAATTTGTGAATTTGACATGAAGCACCGATGGTATTCAGGAC---GT-TGTT------CCAT-TTATTGCGATATATCAATGAAATT-TGCACAGATTAT
gi|1 : ACTCAACCGATTC-GAAACGCAGAGGTTGTACAATAATGCTTATTTA-CAGTGTTGGCACATTTCAAATTCATT--CAAACT-TCATTCACAACAAAAACAA----TATAAAGCGCATAATCTGTTCA-AATTCCATTGTTA------TATCGCAAAAAAATGGGCA-TATTACAACGC-CTTATTACCGTCGGTGCTTCATGTCAGTT-TCACAAATTAATAC--CGCATGTATCACCCCCAACACCCACACTCGCAATTTACAGGCAAGACATCTACGTCCCATTAACGACACTGCTGTAGCTATACGACTTTGCGGAATATTGTTCCACTCATTAATGAGGCCATTGCGTAACTTAATGACATTTCTTGGCGGAGGCACAC-------------GGA------CA-----------A-----------G--AG----TCC---TAGATATGCCCAATAGGAGCCATGTCTGGGGATAACATGAGCCATTCCATCACTAAAACGTTGCTTGTCTGAAGGCAAGCAGCCGTTTTCCGTGCGCAATTATACTGGGGCA-----TTATTATGTTGGTAGATTTCACCAGCACTTGGGAAATGACGCCCCACGAATGACA-TGG-CA-CGGGAACTAGC---------A---TGT------ACAT-AG-TTATTAAGCTGGCATAGTAGCGTTTATGAGTCGTA--------------TATTGTGAGTGGGTGATCGTACATGCAGCTCTGGTTTATGAATATGATAAGAATCACCGATGGTACTCAGGGC---GC-TA-T------CTATATTATGGCGGCATATCAATTAACTT-TGCACAGACTAT
gi|10 : TCAACCGATGTAGAAACGCAAAGGTTGTACAATGATGATT-TTAA-TACTGTAAACACCATTATAATTTATT--CAAATT-TCA-----------AACAA----TATAAAACGCACAAACAAGGGA-AATTTCATAGATA------TGTCGCAAT-AAATTGGCA-CATAATAAAGTTCTGAATGCCATCAATGCTTCATGTCAGAT-TAACAa
gi|11 : taggAACCGATTCA-AAACGCACAAGTTGTACAATGACGAGT-TGAA-CAGTGTTAACACAAGTCAATTATTTT--CAACTT-TTATACACAA-AATAACAA----TA-AAAAT------TCTCTGTA-AATGTCATTGATA------TATCGCCATAAATTGG----CACAGCAACGTTTTGAATACCATC
gi|12 : TTAGTAACGCAAAGGTTGAACAATGGTGATT-TTAA-CAGTGTTAACACAATTCAGATCTTTT--CAAACTGTTA-AAACAGCAAAAACGA----TATAACACGAACAATATGTGCA-AATTACATTGATATACATGTATCGCAATAAAtt
gi|13 : gAACCGATTAAGAACCTCAAAGACTGTACAATGATAGTT-TTAA-CAGTGTTAAC-CACTTCAAATTTATT--CGAATT-TCATACACAGCAAAGGCAA----T-TCAAATGCATtg
gi|14 : CTCAACCGATTTAGAAACGCAAAGGTTGTACACTGATGATT-TTAA--AATGTTTACATAGTACACATTTAGT--CAAATT----TGCACAATAAAAATAgt
gi|15 : CAACCAATTTAAAAACGCAAAGGGTGTACAATAATGATT-TTAA-CAGTATTGACACA----------ATT--CAAATT-TCATACACAATAA
gi|16 : ACTCAACCGATATAGAAACGCAAAGGTCGTATGATGATGATT-TTAA-CAGTATTTACACAATTCAAATTCATT--Cg
gi|17 : cACTCAACCGACTTAGAAACGCAAAGATTGAAC
gi|2 : TGAATACCATCGGTGCCTCGTGTCAAAAACCACAAATATGTAC--CCCATGTATTATGCCC--------CACTCGCAAT--ACAGGCTAGACATCTACGTCTCACAGACAACGCCATGGTAGCTGCACGACGTTGTGGAATGCTGTTCCACTCATGAACGAGTGCATTGCGTAACTCTCTCATGTTTCTTGGCTGAGGTACACTGGCAGTGATCCCAGA------CATACTCATTAGAA-----------GCAAG----TCTTTCCAGACATGTTCAATAGGAGCAATGTTTGAAGATTATACAGACTAACCCATCACTTAAACGTTGTTTGTCTGAAGGTAAGCATTCGCCCTCAGTTCGCGA-TGTGCA-GGGCA-----TTATCATGTTGTTGGATTTCACCAGCACGTGGAAAATGACGCCTCAGGAATGGCATTGA-AA-CGGGAACTAGC---------A---CGTTAATGAACAAGA--TCGTGTAACTACTATAGTGCTG-GTATGAGGCGTTAA-----AG---------ACGAGCGGGGAATAATACATGCGGTATCAGTTTGTGAATTT-------------GATGGTATTTGGGAC---GA-TGTTATGTGCCCAT-TTATTGCGATATATCAATG--GTTATGCACAGATTAg
gi|2 : aACTCAACCGATTAAGAAACGCAA-----------------TT-TTAG-CAGTGTTATCACAATTGAAATTTATTTTCAAATG-TCATACACAACAATAACAC----TATAAGACGCGTAATCTGTGCATAA--CCATTGATA------TATCGCAAT-AAATGGGCA-CATAACATCGTCCCAAATACCA-------------TCAAAT-TCACAAACTGATAC--CGCATGTATTATTCCC--------CGCTCGT----------CT-----TTAACGCCTCATA-CCAGCACTATAGTAGTTACACGATCTTGTcgcgtcttatagtgttattgttgtgtatgacatttgaaaataaatttcaattgtgataacactgctaaaattgcgtttcttaatcggttgagt
gi|3 : atgaataccatcggtgcctcgtgtcaaaaaccacaaatatgtaccccatgtattatgccccactcgcaatacaggctagacatctacgtctcacagacaacgccatggtagctgcacgacgttgtggaatgctgttccactcatgaacgagtgcattgcgtaactctctcatgtttcttggctgaggtacactggcagtgatcccagacatactcattagaagcaagtctttccagacatgttcaataggagcaatgtttgaagattatacagactaacccatcacttaaacgttgtttgtctgaaggtaagcattcgccctcagttcgcgatgtgcagggcattatcatgttgttggatttcaccagcacgtggaaaatgacgcctcaggaatggcattgaaacgggaactagcacgttaatgaGCATGGTGTAATTCTCTGACATTTCTTGGCAAAGGCAAAC-------------GGG------CA-----------C--------------AC----TCT---CAGACATGCTCTATAGGAGCAATGTCTGGGGATCACACAGGCCAATC---------AATGTTGTTTGTTTGAAGGTAAGCAGTCATCCTCCAATTGCAA-TGTGCAGGGGCATCAAGTTATCATGTTAGTAGATTTCACCAGCATGTGGGAAATGGCACTTCATGCAGGGCATTGGCAA-CAGGAACTAACACATGGTTAA---TGT------ACAAG-G-CTGTGTAGCTACCATAGTATTGTCTATGAGGTGTAGAAGTCTAGC-CAGTATTATGAGTGGGGGATCATGCAAACGGTATTAATTTGTGAATTTGGCATGAAGAACCGATGATATCCAGAACAATGTATGTTGC----CCAT-TTATTGCGACATATCAATGGAATT-TGCACAGATTGT
gi|3 : gTCGATCGATTTAGAAGTGCAAAGGTTGTACAACAACAATT-TTTAACATTGTTAACA------GAATTTATT--TAAATT-TCATATATAACAATAGCAA----CATAAGATGCACAATCTGTGCA-AATTCCATTGATA------TGTCGCAATAAA-TGGGCAACATA-CATTGTTCTGGATATCATCGGTTCTTCATGCCAAAT-TCACAAATTAATAC--CGTTTGCATGATCCCC--------CACTCATAAT--ACTGGCTAGACTTCTACACCTCATAGACAATACTATGGTAGCTACACAGCCTTGTgcatcttatgttgctattgttatatatgaaatttaaataaattctgttaacaatgttaaaaattgttgttgtacaacctttgcacttctaaatcgatcga
gi|4 : ggcatggtgtaattctctgacatttcttggcaaaggcaaacgggcacactctcagacatgctctataggagcaatgtctggggatcacacaggccaatcaatgttgtttgtttgaaggtaagcagtcatcctccaattgcaatgtgcaggggcatcaagttatcatgttagtagatttcaccagcatgtgggaaatggcacttcatgcagggcattggcaacaggaactaacacatggttaatgtAACCAATTTAGAAATGCAAAGTTTGTACAATGATGATT-TCAA-CAGTCTTAACAAATTTCAAATTTATT--CAAATT-TCATACACAGGAATTCCAA----TATGAAACACATAATCTGTGCA-AATTTCATTGACA------TATCGCAATAAA-TGGGCA-CATAACAACGTCCTCAATACCATCAGTGCTTCATGTCAAAT-TCACAAATTA-TAC--TGCTTGTATGATCACC--------CACTCGCAAC--ACAGACCAGACATCTACGTCTCACAGACAACACTATGGTAACTGTATGACCTTGTTGAATGTTTTTTCACTAATGAACGAGGGCACCGAGTAACTCTCTGATGTTTATAGACTGAGGTACGC---------------ATCATCTCA-----------AGCCCACCATCTG--AGCTCATTT---CAAACATGCACAATGGGAGCCATGCCTGGGTATACTGCAG
gi|5 : AGATTCCACCAACGCGTAAAAAATGGTGCTTCGCAAATGGCA-TGG-AAACAGGAACTAGT---------ACATTGTTAAT--ACACAAGGTTGTATAGCTTCCACAGTGTCTTCTACGAGGCTTGGATGATTAGCCT-GTATTGCGAGCAGAGGATCATACACACGGTAGTAAATTGTGAATT-----TGAAGAACTGATGACATTAAATAC---GT-TGTTTTGTGCCCTT-TTATTGC--TATATCAATGAAATT-GGCACAGGGTATattcc
gi|5 : TTAACCAATTTAGAAATGCAAAGGTTGTACAATGATGAGT-TTAG-CAGTGTTAACACAATTCAAATTGATT--CAAATT-TCATGCACAACAATAACTACATGTATAAAATGCATACCCTGTGCC-AATTTCATTGATA------TA--GCAATAAAA-GGGCA-CAAAACAACGTATTTAATGTCATCAGTTCT-----TCAAAT-TCACAATTTACTAC--CGTGTGTATGATCCTC--------TGCTCGCAAT--ACAGGCTAATCATCCAAGCCTCGTAGAAGACACTGTGGAAGCTATACAACCTTGTGgcattttatacatgtagttattgttgtgcatgaaatttgaatcaatttgaattgtgttaacactgctaaactcatcattgtacaacctttgcatttctaaattggttaa
gi|6 : agattccaccaacgcgtaaaaaatggtgcttcgcaaatggcatggaaacaggaactagtacattgttaataAACTGATTTAGAAACACAAAGATTGTACAATGATGATT-TTAA-CAGTGTTAACACA----AAAGTTATT--CAAATT-TCATACACAACAATAACCA----CATAAAATGCATAATCTGTGCA-AATTTCATTGGTT------TATCGCAATAAA-TGGGCA-CATAACAAGGTACTAAATACCATCGGTGCTTCATGTCAAAA-TCACAAATTAATAC--AGCATGTATGATCCCC--------CACTCGCAAT--ACAGCCTAAAAATCTACGCCTCATAGGCGACTCTATGATAGCT
gi|7 : tAAAGGTTGTACAATTATAATT-TTAA-CGGTGTTAACACAGTTTGAATTTATT--CAAATT-TAATACACAGGAGTAACAA----CAATAAACGCATAATCTATGTA-AATTT------TA------TATCACAAT-AAATGGACG-CATCTAAATGATCTGAATACCATCGGTGCTCCATGTCAAGT-TCGCAACTTAATACCACGCGTGAATGATCCGG--------AACTTGCA------AGGCTAGTCATCTACGTCTCATAGt
gi|8 : aacggacttatagcaACAGATTTAGAAACGTAAAAGATGTACAATGAAGATT-TTAA---GTGTTAACACAATTCAAATTTATT--CATATT-TCGTACACAATGATAACAA----CATAAAACGCACAA-----------------------------ATCGTAAT-AAATGGACA-CATCACAACATCCTGAATACCATCAATGTTTCATGTCAAAT-TCACAAATATATAC--CACGTACATGAT---------------TTG-------------AGA-ATTT-TGGCTCATAGACGACACTGTGGTAGCtgatagtaataaatgta
gi|9 : agATTTAACCGACTTAAAAACGCAAAGGTTATACAGTGATGGAT-TTAA-CTGTGTTATTACAAC--------ATT--CAAATT-TCTTTCACAACAAAAACGA----TATAAAACGGATAGTATTTGCA-ACGTTCTTTGATA------TATCT--AAAAAATAGTCA-CGT---AACGTCCTGAATACCATCGATGTTTCATTTCCAAT-T
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GCTCTGATGGTTCCGATATCAAAGCATGGTGAC
Unaligned ( gi|19 ): TGGAGAGAGTACATGACGCAACTCTGATATTT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11111111 77777777777777777777777777777777777777777777777777777777 111 2 1 33333 1 333333333333333 22222 1 888888888888888 333333 222222 1 1
lowQualScore : 2 2 2 2222 33 2 1 2 6666 3 999999 1 2 3 33 0 3 3 66 2 0 66666666 8888 0 1 4 0 1 99999999999999999999999999999999999999999999999999999999 777 1 1 1 0 6 6 0 3 6 33333 0 3 0 666666666666666 33333 0 1 0 33 0 444444444444444 4 0 666666 55 0 22 0 7 555555 0 33 7 0 0 0
lowQualScore : . . . .... .. . . . .... . ...... . . . .. . . . .. . . ........ .... . . . . . ........................................................ ... . . . . . . . . . ..... . . . ............... ..... . . . .. . ............... . . ...... .. . .. . . ...... . .. . . . .
lowQualScore : 4 5 5 2222 44 7 5 0 5555 3 666666 4 3 6 55 4 6 9 11 7 1 11111111 6666 1 1 2 2 0 00000000000000000000000000000000000000000000000000000000 555 2 0 0 7 7 7 7 3 7 33333 2 2 0 222222222222222 22222 2 2 8 55 0 000000000000000 2 8 888888 55 2 22 2 8 555555 0 22 0 8 0 8
consensus : ACTCAACCGATTTAGAAACGCAAA-GGTTGTACAATGATGATT-TT-AACAGTGTTAACACAATTCAAATTTATT--CAAATT-TCATACACAACAATAACAA----TATAAAACGCATAATCTGTGCA-AATTTCATTGATA------TATCGCAATAAAATGGGCA-CATAACAACGTCCTGAATACCATCGGTGCTTCATGTCAAAT-TCACAAATTAATAC--CGCGTGTATGATCCCC--------CACTCGCAAT--ACAGGCTAGACATCTACGCCTCATAGACGACACTATGGTAGCTACACGACCTTGTGGAATGTTGTTCCACTCATGAACGAGGGCATCGCGTAACTCTCTGACGTTTCTTGGCNGAGGCACAC-------------GGA------CA-----------A-----------G--AG----TCT---CAGACATGCTCAATAGGAGCNATGTCTGGGGATNACACGGGCCAATCCATCACT-AAACGTTGTTTGTCTGAAGGTAAGCAGTCGTCCTCCGTTCGCGA-TGTGCAGGGGCAT-----TATCATGTTGGTAGATTTCACCAGCACGTGGGAAATGGCGCCTCACGAATGGCATTGG-AACGGGAACTAGCA---C---GTTAATG-ACANGAG-TTGTGTAGCTACCATAGTGTCGTCTATGAGGCG-TAGA--A--CTAGCC-GTATTGCGAGCGGGGGATCATACACGCGGTATTAGTTTGTGAATTTGGCA-GAAGAACCGATGGTATTCGGGACGNTGTTATG-TGCCCAT-TTATTGCGACATATCAATGAAATT-TGCACAGATTAT
Reference ( family-12260 ) : ACTCAACCGATTTAGAAACGCAAA-GGTTGTACAATGATGATT-TT-AACAGTGTTAACACAATTCAAATTTATT--CAAATT-TCATACACAACAATAACAA----TATAAAACGCATAATCTGTGCA-AATTTCATTGATA------TATCGCAATAAAATGGGCA-CATAACAACGTCCTGAATACCATCGGTGCTTCATGTCAAAT-TCACAAATTAATAC--CGCGTGTATGATCCCC--------CACTCGCAAT--ACAGGCTAGACATCTACGCCTCATAGACGACACTATGGTAGCTACACGACCTTGTGGAATGTTGTTCCACTCATGAACGAGGGCATCGCGTAACTCTCTGACGTTTCTTGGCNGAGGCACAC-------------GGA------CA-----------A-----------G--AG----TCT---CAGACATGCTCAATAGGAGCNATGTCTGGGGATNACACGGGCCAATCCATCACT-AAACGTTGTTTGTCTGAAGGTAAGCAGTCGTCCTCCGTTCGCGA-TGTGCAGGGGCAT-----TATCATGTTGGTAGATTTCACCAGCACGTGGGAAATGGCGCCTCACGAATGGCATTGG-AACGGGAACTAGCA---T---GTTAAT--ACANGAG-TTGTGTAGCTACCATAGTGTCGTCTATGAGGCG-TAGA--G--CTAGCC-GTATTGCGAGCGGGGGATCATACACGCGGTATTAGTTTGTGAATTTGGCATGAAGAACCGATGGTATTCGGGACGTTGTTNCG-TGCCCAT-TTATTGCGACATATCAATGAAATT-TGCACAGATTAT
gi|1 : ACTCAACCGATTC-GAAACGCAGA-GGTTGTACAATAATGCTTATT-TACAGTGTTGGCACATTTCAAATTCATT--CAAACT-TCATTCACAACAAAAACAA----TATAAAGCGCATAATCTGTTCA-AATTCCATTGTTA------TATCGCAAAAAAATGGGCA-TATTACAACG-CCTTATTACCGTCGGTGCTTCATGTCAGTT-TCACAAATTAATAC--CGCATGTATCACCCCCAACACCCACACTCGCAATTTACAGGCAAGACATCTACGTCCCATTAACGACACTGCTGTAGCTATACGACTTTGCGGAATATTGTTCCACTCATTAATGAGGCCATTGCGTAACTTAATGACATTTCTTGGCGGAGGCACAC-------------GGA------CA-----------A-----------G--AG----TCC---TAGATATGCCCAATAGGAGCCATGTCTGGGGATAACATGAGCCATTCCATCACTAAAACGTTGCTTGTCTGAAGGCAAGCAGCCGTTTTCCGTGCGCAATTATACTGGGGCAT-----TATTATGTTGGTAGATTTCACCAGCACTTGGGAAATGACGCCCCACGAATGACA-TGG-CACGGGAACTAGCA---T---G----T--ACAT-AG-TTATTAAGCTGGCATAGTAGCGTTTATGAGTCG-TA---------------TATTGTGAGTGGGTGATCGTACATGCAGCTCTGGTTTATGAATATGATAAGAATCACCGATGGTACTCAGGGCGCTAT--------CTATATTATGGCGGCATATCAATTAACTT-TGCACAGACTAT
gi|10 : TCAACCGATGTAGAAACGCAAA-GGTTGTACAATGATGATT-TT-AATACTGTAAACACCATTATAATTTATT--CAAATT-TCA-----------AACAA----TATAAAACGCACAAACAAGGGA-AATTTCATAGATA------TGTCGCAAT-AAATTGGCA-CATAATAAAGTTCTGAATGCCATCAATGCTTCATGTCAGAT-TAACAa
gi|11 : taggAACCGATTCA-AAACGCACA-AGTTGTACAATGACGAGT-TG-AACAGTGTTAACACAAGTCAATTATTTT--CAACTT-TTATACACAA-AATAACAA----TA-AAAAT------TCTCTGTA-AATGTCATTGATA------TATCGCCATAAATTGG----CACAGCAACGTTTTGAATACCATC
gi|12 : TTAGTAACGCAAA-GGTTGAACAATGGTGATT-TT-AACAGTGTTAACACAATTCAGATCTTTT--CAAACTGTTA-AAACAGCAAAAACGA----TATAACACGAACAATATGTGCA-AATTACATTGATATACATGTATCGCAATAAAtt
gi|13 : gAACCGATTAAGAACCTCAAA-GACTGTACAATGATAGTT-TT-AACAGTGTTAAC-CACTTCAAATTTATT--CGAATT-TCATACACAGCAAAGGCAA----T-TCAAATGCATtg
gi|14 : CTCAACCGATTTAGAAACGCAAA-GGTTGTACACTGATGATT-TT-AA-AATGTTTACATAGTACACATTTAGT--CAAATT----TGCACAATAAAAATAgt
gi|15 : CAACCAATTTAAAAACGCAAA-GGGTGTACAATAATGATT-TT-AACAGTATTGACACA----------ATT--CAAATT-TCATACACAATAA
gi|16 : ACTCAACCGATATAGAAACGCAAA-GGTCGTATGATGATGATT-TT-AACAGTATTTACACAATTCAAATTCATT--Cg
gi|17 : cACTCAACCGACTTAGAAACGCAAA-GATTGAAC
gi|2 : TGAATACCATCGGTGCCTCGTGTCAAAAACCACAAATATGTAC--CCCATGTATTATGCCC--------CACTCGCAAT--ACAGGCTAGACATCTACGTCTCACAGACAACGCCATGGTAGCTGCACGACGTTGTGGAATGCTGTTCCACTCATGAACGAGTGCATTGCGTAACTCTCTCATGTTTCTTGGCTGAGGTACACTGGCAGTGATCCCAGA------CATACTCATTAGAA-----------GCAAG----TCTTTCCAGACATGTTCAATAGGAGCAATGTTTGAAGATTATACAGACTAACCCATCACTTAAACGTTGTTTGTCTGAAGGTAAGCATTCGCCCTCAGTTCGCGA-TGTGCAGGG-CAT-----TATCATGTTGTTGGATTTCACCAGCACGTGGAAAATGACGCCTCAGGAATGGCATTGA-AACGGGAACTAGCA---C---GTTAATGAACAAGA--TCGTGTAACTACTATAGTGCTG-GTATGAGGCGTTAAA--G--------------ACGAGCGGGGAATAATACATGCGGTATCAGTTTGTGAATTT-------------GATGGTATTTGGGACGATGTTATG-TGCCCAT-TTATTGCGATATATCAATG--GTTATGCACAGATTAg
gi|2 : aACTCAACCGATTAAGAAACGCAA------------------TT-TT-AGCAGTGTTATCACAATTGAAATTTATTTTCAAATG-TCATACACAACAATAACAC----TATAAGACGCGTAATCTGTGCATAA--CCATTGATA------TATCGCAAT-AAATGGGCA-CATAACATCGTCCCAAATACCA-------------TCAAAT-TCACAAACTGATAC--CGCATGTATTATTCCC--------CGCTCGT----------CT-----TTAACGCCTCATA-CCAGCACTATAGTAGTTACACGATCTTGTcgcgtcttatagtgttattgttgtgtatgacatttgaaaataaatttcaattgtgataacactgctaaaattgcgtttcttaatcggttgagt
gi|3 : atgaataccatcggtgcctcgtgtcaaaaaccacaaatatgtaccccatgtattatgccccactcgcaatacaggctagacatctacgtctcacagacaacgccatggtagctgcacgacgttgtggaatgctgttccactcatgaacgagtgcattgcgtaactctctcatgtttcttggctgaggtacactggcagtgatcccagacatactcattagaagcaagtctttccagacatgttcaataggagcaatgtttgaagattatacagactaacccatcacttaaacgttgtttgtctgaaggtaagcattcgccctcagttcgcgatgtgcagggcattatcatgttgttggatttcaccagcacgtggaaaatgacgcctcaggaatggcattgaaacgggaactagcacgttaatgaGGCATGGTGTAATTCTCTGACATTTCTTGGCAAAGGCAAAC-------------GGG------CA-----------C--------------AC----TCT---CAGACATGCTCTATAGGAGCAATGTCTGGGGATCACACAGGCCAATC---------AATGTTGTTTGTTTGAAGGTAAGCAGTCATCCTCCAATTGCAA-TGTGCAGGGGCATCAAGTTATCATGTTAGTAGATTTCACCAGCATGTGGGAAATGGCACTTCATGCAGGGCATTGGCAACAGGAACTAACA---CATGGTTAATGTACAAG-G-CTGTGTAGCTACCATAGTATTGTCTATGAGGTG-TAGA--AGTCTAGCCAGTATTATGAGTGGGGGATCATGCAAACGGTATTAATTTGTGAATTTGGCATGAAGAACCGATGATATCCAGAACAATG-TATGTTGCCCAT-TTATTGCGACATATCAATGGAATT-TGCACAGATTGT
gi|3 : TCGATCGATTTAGAAGTGCAAA-GGTTGTACAACAACAATT-TTTAACATTGTTAACA------GAATTTATT--TAAATT-TCATATATAACAATAGCAA----CATAAGATGCACAATCTGTGCA-AATTCCATTGATA------TGTCGCAATAAA-TGGGCAACATA-CATTGTTCTGGATATCATCGGTTCTTCATGCCAAAT-TCACAAATTAATAC--CGTTTGCATGATCCCC--------CACTCATAAT--ACTGGCTAGACTTCTACACCTCATAGACAATACTATGGTAGCTACACAGCCTTGTgcatcttatgttgctattgttatatatgaaatttaaataaattctgttaacaatgttaaaaattgttgttgtacaacctttgcacttctaaatcgatcga
gi|4 : ggcatggtgtaattctctgacatttcttggcaaaggcaaacgggcacactctcagacatgctctataggagcaatgtctggggatcacacaggccaatcaatgttgtttgtttgaaggtaagcagtcatcctccaattgcaatgtgcaggggcatcaagttatcatgttagtagatttcaccagcatgtgggaaatggcacttcatgcagggcattggcaacaggaactaacacatggttaatgtAACCAATTTAGAAATGCAAA-GTTTGTACAATGATGATT-TC-AACAGTCTTAACAAATTTCAAATTTATT--CAAATT-TCATACACAGGAATTCCAA----TATGAAACACATAATCTGTGCA-AATTTCATTGACA------TATCGCAAT-AAATGGGCA-CATAACAACGTCCTCAATACCATCAGTGCTTCATGTCAAAT-TCACAAATT-ATAC--TGCTTGTATGATCACC--------CACTCGCAAC--ACAGACCAGACATCTACGTCTCACAGACAACACTATGGTAACTGTATGACCTTGTTGAATGTTTTTTCACTAATGAACGAGGGCACCGAGTAACTCTCTGATGTTTATAGACTGAGGTACGC---------------ATCATCTCA-----------AGCCCACCATCTG--AGCTCATTT---CAAACATGCACAATGGGAGCCATGCCTGGGTAT
gi|5 : AGATTCCACCAACGCGTAAAAAATGGTGCTTCGCAAATGGCATGGA-AACAGGAACTAGTACATT---GTTAAT--ACACAAGGTTGTATAGCTTCCACAGTGTCTTCTACGAGGCT-TGGATGA--TTAGCCTGTATTGCGAGCAGAGGATCATACACACGGTAGTAAATTGTGAATTTG-----AAGAACTGATGACATTAAATACGTTGTTTTG-TGCCCTT-TTATTGC--TATATCAATGAAATT-GGCACAGGGTATactgcagattcc
gi|5 : TTAACCAATTTAGAAATGCAAA-GGTTGTACAATGATGAGT-TT-AGCAGTGTTAACACAATTCAAATTGATT--CAAATT-TCATGCACAACAATAACTACATGTATAAAATGCATACCCTGTGCC-AATTTCATTGATA------TA--GCAATAAAA-GGGCA-CAAAACAACGTATTTAATGTCATCAGTTCT-----TCAAAT-TCACAATTTACTAC--CGTGTGTATGATCCTC--------TGCTCGCAAT--ACAGGCTAATCATCCAAGCCTCGTAGAAGACACTGTGGAAGCTATACAACCTTGTGgcattttatacatgtagttattgttgtgcatgaaatttgaatcaatttgaattgtgttaacactgctaaactcatcattgtacaacctttgcatttctaaattggttaa
gi|6 : agattccaccaacgcgtaaaaaatggtgcttcgcaaatggcatggaaacaggaactagtacattgttaataAACTGATTTAGAAACACAAA-GATTGTACAATGATGATT-TT-AACAGTGTTAACACAA----AAGTTATT--CAAATT-TCATACACAACAATAACCA----CATAAAATGCATAATCTGTGCA-AATTTCATTGGTT------TATCGCAATAAA-TGGGCA-CATAACAAGGTACTAAATACCATCGGTGCTTCATGTCAAAA-TCACAAATTAATAC--AGCATGTATGATCCCC--------CACTCGCAAT--ACAGCCTAAAAATCTACGCCTCATAGGCGACTCTATGATAGCT
gi|7 : tAACGGACTTATA---GCAAAAGGTTGTACAATTATAATT-TT-AACGGTGTTAACACAGTTTGAATTTATT--CAAATT-TAATACACAGGAGTAACAA----CAATAAACGCATAATCTATGTA-AATTT------TA------TATCACAAT-AAATGGACG-CATCTAAATGATCTGAATACCATCGGTGCTCCATGTCAAGT-TCGCAACTTAATACCACGCGTGAATGATCCGG--------AACTTGCA------AGGCTAGTCATCTACGTCTCATAGt
gi|8 : ACAGATTTAGAAACGTAAA-AGATGTACAATGAAGATT-TT-AA--GTGTTAACACAATTCAAATTTATT--CATATT-TCGTACACAATGATAACAA----CATAAAACGCACAA-----------------------------ATCGTAAT-AAATGGACA-CATCACAACATCCTGAATACCATCAATGTTTCATGTCAAAT-TCACAAATATATAC--CACGTACATGAT---------------TTG-------------AGA-ATTT-TGGCTCATAGACGACACTGTGGTAGCtgatagtaataaatgta
gi|9 : agATTTAACCGACTTAAAAACGCAAA-GGTTATACAGTGATGGAT-TT-AACTGTGTTATTACAAC--------ATT--CAAATT-TCTTTCACAACAAAAACGA----TATAAAACGGATAGTATTTGCA-ACGTTCTTTGATA------TATC-TAA-AAAATAGTCA-CGT---AACGTCCTGAATACCATCGATGTTTCATTTCCAAT-T
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GCTCTGATGGTTCCGATATCAAAGCATGGTGAC
Unaligned ( gi|19 ): TGGAGAGAGTACATGACGCAACTCTGATATTT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11111111 77777777777777777777777777777777777777777777777777777777 111 2 1 33333 1 44444444444 2222 7777777777777777 4444444 111111 1 1
lowQualScore : 2 2 2 2222 33 2 1 2 6666 3 999999 1 2 3 33 0 3 3 66 2 0 66666666 8888 0 1 4 0 1 99999999999999999999999999999999999999999999999999999999 777 1 1 1 0 6 6 0 3 6 33333 0 3 0 00000000000 1111 0 1 0 33 8888888888888888 4 0 7777777 55 0 22 0 1 333333 0 33 7 0 0 0
lowQualScore : . . . .... .. . . . .... . ...... . . . .. . . . .. . . ........ .... . . . . . ........................................................ ... . . . . . . . . . ..... . . . ........... .... . . . .. ................ . . ....... .. . .. . . ...... . .. . . . .
lowQualScore : 4 5 5 2222 44 7 5 0 5555 3 666666 4 3 6 55 4 6 9 11 7 1 11111111 6666 1 1 2 2 0 00000000000000000000000000000000000000000000000000000000 555 2 0 0 7 7 7 7 3 7 33333 2 2 0 55555555555 5555 2 2 8 55 0000000000000000 2 8 2222222 55 2 22 2 0 222222 0 22 0 8 0 8
consensus : ACTCAACCGATTTAGAAACGCAAA-GGTTGTACAATGATGATT-TT-AACAGTGTTAACACAATTCAAATTTATT--CAAATT-TCATACACAACAATAACAA----TATAAAACGCATAATCTGTGCA-AATTTCATTGATA------TATCGCAATAAAATGGGCA-CATAACAACGTCCTGAATACCATCGGTGCTTCATGTCAAAT-TCACAAATTAATAC--CGCGTGTATGATCCCC--------CACTCGCAAT--ACAGGCTAGACATCTACGCCTCATAGACGACACTATGGTAGCTACACGACCTTGTGGAATGTTGTTCCACTCATGAACGAGGGCATCGCGTAACTCTCTGACGTTTCTTGGCNGAGGCACAC-------------GGA------CA-----------A-----------G--AG----TCT---CAGACATGCTCAATAGGAGCNATGTCTGGGGATNACACGGGCCAATCCATCACT-AAACGTTGTTTGTCTGAAGGTAAGCAGTCGTCCTCCGTTCGCGA-TGTGCAGGGGCAT-----TATCATGTTGGTAGATTTCACCAGCACGTGGGAAATGGCGCCTCACGAATGGCATTGG-AACGGGAACTAGCACAT-GTTAATGNACAAGAGTTGTGTAGCTACCATAGTGTCGTCTATGAGGCGTAGA--A--CTAGCC-GTATTGCGAGCGGGGGATCATACACGCGGTATTAGTTTGTGAATTTGGC-A-GAAGAACCGATGGTATTCGGGACGNTGTTATG-TGCCCAT-TTATTGCGACATATCAATGAAATT-TGCACAGATTAT
Reference ( family-12260 ) : ACTCAACCGATTTAGAAACGCAAA-GGTTGTACAATGATGATT-TT-AACAGTGTTAACACAATTCAAATTTATT--CAAATT-TCATACACAACAATAACAA----TATAAAACGCATAATCTGTGCA-AATTTCATTGATA------TATCGCAATAAAATGGGCA-CATAACAACGTCCTGAATACCATCGGTGCTTCATGTCAAAT-TCACAAATTAATAC--CGCGTGTATGATCCCC--------CACTCGCAAT--ACAGGCTAGACATCTACGCCTCATAGACGACACTATGGTAGCTACACGACCTTGTGGAATGTTGTTCCACTCATGAACGAGGGCATCGCGTAACTCTCTGACGTTTCTTGGCNGAGGCACAC-------------GGA------CA-----------A-----------G--AG----TCT---CAGACATGCTCAATAGGAGCNATGTCTGGGGATNACACGGGCCAATCCATCACT-AAACGTTGTTTGTCTGAAGGTAAGCAGTCGTCCTCCGTTCGCGA-TGTGCAGGGGCAT-----TATCATGTTGGTAGATTTCACCAGCACGTGGGAAATGGCGCCTCACGAATGGCATTGG-AACGGGAACTAGCAC---GTTAATG-ACANGAGTTGTGTAGCTACCATAGTGTCGTCTATGAGGCGTAGA--A--CTAGCC-GTATTGCGAGCGGGGGATCATACACGCGGTATTAGTTTGTGAATTTGGC-A-GAAGAACCGATGGTATTCGGGACGNTGTTATG-TGCCCAT-TTATTGCGACATATCAATGAAATT-TGCACAGATTAT
gi|1 : ACTCAACCGATTC-GAAACGCAGA-GGTTGTACAATAATGCTTATT-TACAGTGTTGGCACATTTCAAATTCATT--CAAACT-TCATTCACAACAAAAACAA----TATAAAGCGCATAATCTGTTCA-AATTCCATTGTTA------TATCGCAAAAAAATGGGCA-TATTACAACG-CCTTATTACCGTCGGTGCTTCATGTCAGTT-TCACAAATTAATAC--CGCATGTATCACCCCCAACACCCACACTCGCAATTTACAGGCAAGACATCTACGTCCCATTAACGACACTGCTGTAGCTATACGACTTTGCGGAATATTGTTCCACTCATTAATGAGGCCATTGCGTAACTTAATGACATTTCTTGGCGGAGGCACAC-------------GGA------CA-----------A-----------G--AG----TCC---TAGATATGCCCAATAGGAGCCATGTCTGGGGATAACATGAGCCATTCCATCACTAAAACGTTGCTTGTCTGAAGGCAAGCAGCCGTTTTCCGTGCGCAATTATACTGGGGCAT-----TATTATGTTGGTAGATTTCACCAGCACTTGGGAAATGACGCCCCACGAATGACA-TGG-CACGGGAACTAGCAT---GT------ACAT-AGTTATTAAGCTGGCATAGTAGCGTTTATGAGTCGTA---------------TATTGTGAGTGGGTGATCGTACATGCAGCTCTGGTTTATGAATATGATAA-GAATCACCGATGGTACTCAGGGCGCTAT--------CTATATTATGGCGGCATATCAATTAACTT-TGCACAGACTAT
gi|10 : TCAACCGATGTAGAAACGCAAA-GGTTGTACAATGATGATT-TT-AATACTGTAAACACCATTATAATTTATT--CAAATT-TCA-----------AACAA----TATAAAACGCACAAACAAGGGA-AATTTCATAGATA------TGTCGCAAT-AAATTGGCA-CATAATAAAGTTCTGAATGCCATCAATGCTTCATGTCAGAT-TAACAa
gi|11 : taggAACCGATTCA-AAACGCACA-AGTTGTACAATGACGAGT-TG-AACAGTGTTAACACAAGTCAATTATTTT--CAACTT-TTATACACAA-AATAACAA----TA-AAAAT------TCTCTGTA-AATGTCATTGATA------TATCGCCATAAATTGG----CACAGCAACGTTTTGAATACCATC
gi|12 : TTAGTAACGCAAA-GGTTGAACAATGGTGATT-TT-AACAGTGTTAACACAATTCAGATCTTTT--CAAACTGTTA-AAACAGCAAAAACGA----TATAACACGAACAATATGTGCA-AATTACATTGATATACATGTATCGCAATAAAtt
gi|13 : gAACCGATTAAGAACCTCAAA-GACTGTACAATGATAGTT-TT-AACAGTGTTAAC-CACTTCAAATTTATT--CGAATT-TCATACACAGCAAAGGCAA----T-TCAAATGCATtg
gi|14 : CTCAACCGATTTAGAAACGCAAA-GGTTGTACACTGATGATT-TT-AA-AATGTTTACATAGTACACATTTAGT--CAAATT----TGCACAATAAAAATAgt
gi|15 : CAACCAATTTAAAAACGCAAA-GGGTGTACAATAATGATT-TT-AACAGTATTGACACA----------ATT--CAAATT-TCATACACAATAA
gi|16 : ACTCAACCGATATAGAAACGCAAA-GGTCGTATGATGATGATT-TT-AACAGTATTTACACAATTCAAATTCATT--Cg
gi|17 : cACTCAACCGACTTAGAAACGCAAA-GATTGAAC
gi|2 : TGAATACCATCGGTGCCTCGTGTCAAAAACCACAAATATGTAC--CCCATGTATTATGCCC--------CACTCGCAAT--ACAGGCTAGACATCTACGTCTCACAGACAACGCCATGGTAGCTGCACGACGTTGTGGAATGCTGTTCCACTCATGAACGAGTGCATTGCGTAACTCTCTCATGTTTCTTGGCTGAGGTACACTGGCAGTGATCCCAGA------CATACTCATTAGAA-----------GCAAG----TCTTTCCAGACATGTTCAATAGGAGCAATGTTTGAAGATTATACAGACTAACCCATCACTTAAACGTTGTTTGTCTGAAGGTAAGCATTCGCCCTCAGTTCGCGA-TGTGCAGGG-CAT-----TATCATGTTGTTGGATTTCACCAGCACGTGGAAAATGACGCCTCAGGAATGGCATTGA-AACGGGAACTAGCAC---GTTAATGAACAAGA-TCGTGTAACTACTATAGTGCTG-GTATGAGGCGTTAA-------AG--------ACGAGCGGGGAATAATACATGCGGTATCAGTTTGTGAATTT--------------GATGGTATTTGGGACGATGTTATG-TGCCCAT-TTATTGCGATATATCAATG--GTTATGCACAGATTAg
gi|2 : aACTCAACCGATTAAGAAACGCAA------------------TT-TT-AGCAGTGTTATCACAATTGAAATTTATTTTCAAATG-TCATACACAACAATAACAC----TATAAGACGCGTAATCTGTGCATAA--CCATTGATA------TATCGCAAT-AAATGGGCA-CATAACATCGTCCCAAATACCA-------------TCAAAT-TCACAAACTGATAC--CGCATGTATTATTCCC--------CGCTCGT----------CT-----TTAACGCCTCATA-CCAGCACTATAGTAGTTACACGATCTTGTcgcgtcttatagtgttattgttgtgtatgacatttgaaaataaatttcaattgtgataacactgctaaaattgcgtttcttaatcggttgagt
gi|3 : atgaataccatcggtgcctcgtgtcaaaaaccacaaatatgtaccccatgtattatgccccactcgcaatacaggctagacatctacgtctcacagacaacgccatggtagctgcacgacgttgtggaatgctgttccactcatgaacgagtgcattgcgtaactctctcatgtttcttggctgaggtacactggcagtgatcccagacatactcattagaagcaagtctttccagacatgttcaataggagcaatgtttgaagattatacagactaacccatcacttaaacgttgtttgtctgaaggtaagcattcgccctcagttcgcgatgtgcagggcattatcatgttgttggatttcaccagcacgtggaaaatgacgcctcaggaatggcattgaaacgggaactagcacgttaatgaGGCATGGTGTAATTCTCTGACATTTCTTGGCAAAGGCAAAC-------------GGG------CA-----------C--------------AC----TCT---CAGACATGCTCTATAGGAGCAATGTCTGGGGATCACACAGGCCAATC---------AATGTTGTTTGTTTGAAGGTAAGCAGTCATCCTCCAATTGCAA-TGTGCAGGGGCATCAAGTTATCATGTTAGTAGATTTCACCAGCATGTGGGAAATGGCACTTCATGCAGGGCATTGGCAACAGGAACTAACACATGGTTAATGTACAAG-GCTGTGTAGCTACCATAGTATTGTCTATGAGGTGTAGA--AGTCTAGCCAGTATTATGAGTGGGGGATCATGCAAACGGTATTAATTTGTGAATTTGGC-ATGAAGAACCGATGATATCCAGAACAATG-TATGTTGCCCAT-TTATTGCGACATATCAATGGAATT-TGCACAGATTGT
gi|3 : TCGATCGATTTAGAAGTGCAAA-GGTTGTACAACAACAATT-TTTAACATTGTTAACA------GAATTTATT--TAAATT-TCATATATAACAATAGCAA----CATAAGATGCACAATCTGTGCA-AATTCCATTGATA------TGTCGCAATAAA-TGGGCAACATA-CATTGTTCTGGATATCATCGGTTCTTCATGCCAAAT-TCACAAATTAATAC--CGTTTGCATGATCCCC--------CACTCATAAT--ACTGGCTAGACTTCTACACCTCATAGACAATACTATGGTAGCTACACAGCCTTGTgcatcttatgttgctattgttatatatgaaatttaaataaattctgttaacaatgttaaaaattgttgttgtacaacctttgcacttctaaatcgatcga
gi|4 : ggcatggtgtaattctctgacatttcttggcaaaggcaaacgggcacactctcagacatgctctataggagcaatgtctggggatcacacaggccaatcaatgttgtttgtttgaaggtaagcagtcatcctccaattgcaatgtgcaggggcatcaagttatcatgttagtagatttcaccagcatgtgggaaatggcacttcatgcagggcattggcaacaggaactaacacatggttaatgtAACCAATTTAGAAATGCAAA-GTTTGTACAATGATGATT-TC-AACAGTCTTAACAAATTTCAAATTTATT--CAAATT-TCATACACAGGAATTCCAA----TATGAAACACATAATCTGTGCA-AATTTCATTGACA------TATCGCAAT-AAATGGGCA-CATAACAACGTCCTCAATACCATCAGTGCTTCATGTCAAAT-TCACAAATT-ATAC--TGCTTGTATGATCACC--------CACTCGCAAC--ACAGACCAGACATCTACGTCTCACAGACAACACTATGGTAACTGTATGACCTTGTTGAATGTTTTTTCACTAATGAACGAGGGCACCGAGTAACTCTCTGATGTTTATAGACTGAGGTACGC---------------ATCATCTCA-----------AGCCCACCATCTG--AGCTCATTT---CAAACATGCACAATGGGAGCCATGCCTGGGTAT
gi|5 : AGATTCCACCAACGCGTAAAAAATGGTGCTTCGCAAATGGCATGGA-AACAGGAACTAGTACATTGTTAATACACAAG-GTTGTATAGCTTCCACAGTGTCTTCTACGAGGCTTGGATGA--TTAGCCTGTATTGCGAGCAGAGGATCATACACACGGTAGTAAATTGTGAATTTG------AAGAACTGATGACATTAAATACGTTGTTTTG-TGCCCTT-TTATTGC--TATATCAATGAAATT-GGCACAGGGTATactgcagattcc
gi|5 : TTAACCAATTTAGAAATGCAAA-GGTTGTACAATGATGAGT-TT-AGCAGTGTTAACACAATTCAAATTGATT--CAAATT-TCATGCACAACAATAACTACATGTATAAAATGCATACCCTGTGCC-AATTTCATTGATA------TA--GCAATAAAA-GGGCA-CAAAACAACGTATTTAATGTCATCAGTTCT-----TCAAAT-TCACAATTTACTAC--CGTGTGTATGATCCTC--------TGCTCGCAAT--ACAGGCTAATCATCCAAGCCTCGTAGAAGACACTGTGGAAGCTATACAACCTTGTGgcattttatacatgtagttattgttgtgcatgaaatttgaatcaatttgaattgtgttaacactgctaaactcatcattgtacaacctttgcatttctaaattggttaa
gi|6 : agattccaccaacgcgtaaaaaatggtgcttcgcaaatggcatggaaacaggaactagtacattgttaataAACTGATTTAGAAACACAAA-GATTGTACAATGATGATT-TT-AACAGTGTTAACACAA----AAGTTATT--CAAATT-TCATACACAACAATAACCA----CATAAAATGCATAATCTGTGCA-AATTTCATTGGTT------TATCGCAATAAA-TGGGCA-CATAACAAGGTACTAAATACCATCGGTGCTTCATGTCAAAA-TCACAAATTAATAC--AGCATGTATGATCCCC--------CACTCGCAAT--ACAGCCTAAAAATCTACGCCTCATAGGCGACTCTATGATAGCT
gi|7 : tAACGGACTTATA---GCAAAAGGTTGTACAATTATAATT-TT-AACGGTGTTAACACAGTTTGAATTTATT--CAAATT-TAATACACAGGAGTAACAA----CAATAAACGCATAATCTATGTA-AATTT------TA------TATCACAAT-AAATGGACG-CATCTAAATGATCTGAATACCATCGGTGCTCCATGTCAAGT-TCGCAACTTAATACCACGCGTGAATGATCCGG--------AACTTGCA------AGGCTAGTCATCTACGTCTCATAGt
gi|8 : ACAGATTTAGAAACGTAAA-AGATGTACAATGAAGATT-TT-AA--GTGTTAACACAATTCAAATTTATT--CATATT-TCGTACACAATGATAACAA----CATAAAACGCACAA-----------------------------ATCGTAAT-AAATGGACA-CATCACAACATCCTGAATACCATCAATGTTTCATGTCAAAT-TCACAAATATATAC--CACGTACATGAT---------------TTG-------------AGA-ATTT-TGGCTCATAGACGACACTGTGGTAGCtgatagtaataaatgta
gi|9 : agATTTAACCGACTTAAAAACGCAAA-GGTTATACAGTGATGGAT-TT-AACTGTGTTATTACAAC--------ATT--CAAATT-TCTTTCACAACAAAAACGA----TATAAAACGGATAGTATTTGCA-ACGTTCTTTGATA------TATC-TAA-AAAATAGTCA-CGT---AACGTCCTGAATACCATCGATGTTTCATTTCCAAT-T
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GCTCTGATGGTTCCGATATCAAAGCATGGTGAC
Unaligned ( gi|19 ): TGGAGAGAGTACATGACGCAACTCTGATATTT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11111111 77777777777777777777777777777777777777777777777777777777 111 2 1 33333 1 22222 11 7777777777777777 555555 111111 1 1
lowQualScore : 2 2 2 2222 33 2 1 2 6666 3 999999 1 2 3 33 0 3 3 66 2 0 66666666 8888 0 1 4 0 1 99999999999999999999999999999999999999999999999999999999 777 1 1 1 0 6 6 0 3 6 33333 0 3 0 3 88888 1 3 88 0 1 0 33 8888888888888888 4 0 111111 55 0 22 0 1 333333 0 33 7 0 0 0
lowQualScore : . . . .... .. . . . .... . ...... . . . .. . . . .. . . ........ .... . . . . . ........................................................ ... . . . . . . . . . ..... . . . . ..... . . .. . . . .. ................ . . ...... .. . .. . . ...... . .. . . . .
lowQualScore : 4 5 5 2222 44 7 5 0 5555 3 666666 4 3 6 55 4 6 9 11 7 1 11111111 6666 1 1 2 2 0 00000000000000000000000000000000000000000000000000000000 555 2 0 0 7 7 7 7 3 7 33333 2 2 0 2 55555 0 2 00 2 2 8 55 0000000000000000 2 8 000000 55 2 22 2 0 222222 0 22 0 8 0 8
consensus : ACTCAACCGATTTAGAAACGCAAA-GGTTGTACAATGATGATT-TT-AACAGTGTTAACACAATTCAAATTTATT--CAAATT-TCATACACAACAATAACAA----TATAAAACGCATAATCTGTGCA-AATTTCATTGATA------TATCGCAATAAAATGGGCA-CATAACAACGTCCTGAATACCATCGGTGCTTCATGTCAAAT-TCACAAATTAATAC--CGCGTGTATGATCCCC--------CACTCGCAAT--ACAGGCTAGACATCTACGCCTCATAGACGACACTATGGTAGCTACACGACCTTGTGGAATGTTGTTCCACTCATGAACGAGGGCATCGCGTAACTCTCTGACGTTTCTTGGCNGAGGCACAC-------------GGA------CA-----------A-----------G--AG----TCT---CAGACATGCTCAATAGGAGCNATGTCTGGGGATNACACGGGCCAATCCATCACT-AAACGTTGTTTGTCTGAAGGTAAGCAGTCGTCCTCCGTTCGCGA-TGTGCAGGGGCAT-----TATCATGTTGGTAGATTTCACCAGCACGTGGGAAATGGCGCCTCACGAATGGCATTGG-AACGGGAACTAGCACA-TG-TTAATGTACAAGAGTTGTGTAGCTACCATAGTGTCGTCTATGAGGCGTAGA--A--CTAGCC-GTATTGCGAGCGGGGGATCATACACGCGGTATTAGTTTGTGAATTTGGC-A-GAAGAACCGATGGTATTCGGGACGNTGTTATG-TGCCCAT-TTATTGCGACATATCAATGAAATT-TGCACAGATTAT
Reference ( family-12260 ) : ACTCAACCGATTTAGAAACGCAAA-GGTTGTACAATGATGATT-TT-AACAGTGTTAACACAATTCAAATTTATT--CAAATT-TCATACACAACAATAACAA----TATAAAACGCATAATCTGTGCA-AATTTCATTGATA------TATCGCAATAAAATGGGCA-CATAACAACGTCCTGAATACCATCGGTGCTTCATGTCAAAT-TCACAAATTAATAC--CGCGTGTATGATCCCC--------CACTCGCAAT--ACAGGCTAGACATCTACGCCTCATAGACGACACTATGGTAGCTACACGACCTTGTGGAATGTTGTTCCACTCATGAACGAGGGCATCGCGTAACTCTCTGACGTTTCTTGGCNGAGGCACAC-------------GGA------CA-----------A-----------G--AG----TCT---CAGACATGCTCAATAGGAGCNATGTCTGGGGATNACACGGGCCAATCCATCACT-AAACGTTGTTTGTCTGAAGGTAAGCAGTCGTCCTCCGTTCGCGA-TGTGCAGGGGCAT-----TATCATGTTGGTAGATTTCACCAGCACGTGGGAAATGGCGCCTCACGAATGGCATTGG-AACGGGAACTAGCACA-TG-TTAATGNACAAGAGTTGTGTAGCTACCATAGTGTCGTCTATGAGGCGTAGA--A--CTAGCC-GTATTGCGAGCGGGGGATCATACACGCGGTATTAGTTTGTGAATTTGGC-A-GAAGAACCGATGGTATTCGGGACGNTGTTATG-TGCCCAT-TTATTGCGACATATCAATGAAATT-TGCACAGATTAT
gi|1 : ACTCAACCGATTC-GAAACGCAGA-GGTTGTACAATAATGCTTATT-TACAGTGTTGGCACATTTCAAATTCATT--CAAACT-TCATTCACAACAAAAACAA----TATAAAGCGCATAATCTGTTCA-AATTCCATTGTTA------TATCGCAAAAAAATGGGCA-TATTACAACG-CCTTATTACCGTCGGTGCTTCATGTCAGTT-TCACAAATTAATAC--CGCATGTATCACCCCCAACACCCACACTCGCAATTTACAGGCAAGACATCTACGTCCCATTAACGACACTGCTGTAGCTATACGACTTTGCGGAATATTGTTCCACTCATTAATGAGGCCATTGCGTAACTTAATGACATTTCTTGGCGGAGGCACAC-------------GGA------CA-----------A-----------G--AG----TCC---TAGATATGCCCAATAGGAGCCATGTCTGGGGATAACATGAGCCATTCCATCACTAAAACGTTGCTTGTCTGAAGGCAAGCAGCCGTTTTCCGTGCGCAATTATACTGGGGCAT-----TATTATGTTGGTAGATTTCACCAGCACTTGGGAAATGACGCCCCACGAATGACA-TGG-CACGGGAACTAGC----------ATGTAC-ATAGTTATTAAGCTGGCATAGTAGCGTTTATGAGTCGTA---------------TATTGTGAGTGGGTGATCGTACATGCAGCTCTGGTTTATGAATATGATAA-GAATCACCGATGGTACTCAGGGCGCTAT--------CTATATTATGGCGGCATATCAATTAACTT-TGCACAGACTAT
gi|10 : TCAACCGATGTAGAAACGCAAA-GGTTGTACAATGATGATT-TT-AATACTGTAAACACCATTATAATTTATT--CAAATT-TCA-----------AACAA----TATAAAACGCACAAACAAGGGA-AATTTCATAGATA------TGTCGCAAT-AAATTGGCA-CATAATAAAGTTCTGAATGCCATCAATGCTTCATGTCAGAT-TAACAa
gi|11 : taggAACCGATTCA-AAACGCACA-AGTTGTACAATGACGAGT-TG-AACAGTGTTAACACAAGTCAATTATTTT--CAACTT-TTATACACAA-AATAACAA----TA-AAAAT------TCTCTGTA-AATGTCATTGATA------TATCGCCATAAATTGG----CACAGCAACGTTTTGAATACCATC
gi|12 : TTAGTAACGCAAA-GGTTGAACAATGGTGATT-TT-AACAGTGTTAACACAATTCAGATCTTTT--CAAACTGTTA-AAACAGCAAAAACGA----TATAACACGAACAATATGTGCA-AATTACATTGATATACATGTATCGCAATAAAtt
gi|13 : gAACCGATTAAGAACCTCAAA-GACTGTACAATGATAGTT-TT-AACAGTGTTAAC-CACTTCAAATTTATT--CGAATT-TCATACACAGCAAAGGCAA----T-TCAAATGCATtg
gi|14 : CTCAACCGATTTAGAAACGCAAA-GGTTGTACACTGATGATT-TT-AA-AATGTTTACATAGTACACATTTAGT--CAAATT----TGCACAATAAAAATAgt
gi|15 : CAACCAATTTAAAAACGCAAA-GGGTGTACAATAATGATT-TT-AACAGTATTGACACA----------ATT--CAAATT-TCATACACAATAA
gi|16 : ACTCAACCGATATAGAAACGCAAA-GGTCGTATGATGATGATT-TT-AACAGTATTTACACAATTCAAATTCATT--Cg
gi|17 : cACTCAACCGACTTAGAAACGCAAA-GATTGAAC
gi|2 : TGAATACCATCGGTGCCTCGTGTCAAAAACCACAAATATGTAC--CCCATGTATTATGCCC--------CACTCGCAAT--ACAGGCTAGACATCTACGTCTCACAGACAACGCCATGGTAGCTGCACGACGTTGTGGAATGCTGTTCCACTCATGAACGAGTGCATTGCGTAACTCTCTCATGTTTCTTGGCTGAGGTACACTGGCAGTGATCCCAGA------CATACTCATTAGAA-----------GCAAG----TCTTTCCAGACATGTTCAATAGGAGCAATGTTTGAAGATTATACAGACTAACCCATCACTTAAACGTTGTTTGTCTGAAGGTAAGCATTCGCCCTCAGTTCGCGA-TGTGCAGGG-CAT-----TATCATGTTGTTGGATTTCACCAGCACGTGGAAAATGACGCCTCAGGAATGGCATTGA-AACGGGAACTAGCAC---G-TTAATGAACAAGA-TCGTGTAACTACTATAGTGCTG-GTATGAGGCGTTAA-------AG--------ACGAGCGGGGAATAATACATGCGGTATCAGTTTGTGAATTT--------------GATGGTATTTGGGACGATGTTATG-TGCCCAT-TTATTGCGATATATCAATG--GTTATGCACAGATTAg
gi|2 : aACTCAACCGATTAAGAAACGCAA------------------TT-TT-AGCAGTGTTATCACAATTGAAATTTATTTTCAAATG-TCATACACAACAATAACAC----TATAAGACGCGTAATCTGTGCATAA--CCATTGATA------TATCGCAAT-AAATGGGCA-CATAACATCGTCCCAAATACCA-------------TCAAAT-TCACAAACTGATAC--CGCATGTATTATTCCC--------CGCTCGT----------CT-----TTAACGCCTCATA-CCAGCACTATAGTAGTTACACGATCTTGTcgcgtcttatagtgttattgttgtgtatgacatttgaaaataaatttcaattgtgataacactgctaaaattgcgtttcttaatcggttgagt
gi|3 : atgaataccatcggtgcctcgtgtcaaaaaccacaaatatgtaccccatgtattatgccccactcgcaatacaggctagacatctacgtctcacagacaacgccatggtagctgcacgacgttgtggaatgctgttccactcatgaacgagtgcattgcgtaactctctcatgtttcttggctgaggtacactggcagtgatcccagacatactcattagaagcaagtctttccagacatgttcaataggagcaatgtttgaagattatacagactaacccatcacttaaacgttgtttgtctgaaggtaagcattcgccctcagttcgcgatgtgcagggcattatcatgttgttggatttcaccagcacgtggaaaatgacgcctcaggaatggcattgaaacgggaactagcacgttaatgaGGCATGGTGTAATTCTCTGACATTTCTTGGCAAAGGCAAAC-------------GGG------CA-----------C--------------AC----TCT---CAGACATGCTCTATAGGAGCAATGTCTGGGGATCACACAGGCCAATC---------AATGTTGTTTGTTTGAAGGTAAGCAGTCATCCTCCAATTGCAA-TGTGCAGGGGCATCAAGTTATCATGTTAGTAGATTTCACCAGCATGTGGGAAATGGCACTTCATGCAGGGCATTGGCAACAGGAACTAACACA-TGGTTAATGTACAAG-GCTGTGTAGCTACCATAGTATTGTCTATGAGGTGTAGA--AGTCTAGCCAGTATTATGAGTGGGGGATCATGCAAACGGTATTAATTTGTGAATTTGGC-ATGAAGAACCGATGATATCCAGAACAATG-TATGTTGCCCAT-TTATTGCGACATATCAATGGAATT-TGCACAGATTGT
gi|3 : TCGATCGATTTAGAAGTGCAAA-GGTTGTACAACAACAATT-TTTAACATTGTTAACA------GAATTTATT--TAAATT-TCATATATAACAATAGCAA----CATAAGATGCACAATCTGTGCA-AATTCCATTGATA------TGTCGCAATAAA-TGGGCAACATA-CATTGTTCTGGATATCATCGGTTCTTCATGCCAAAT-TCACAAATTAATAC--CGTTTGCATGATCCCC--------CACTCATAAT--ACTGGCTAGACTTCTACACCTCATAGACAATACTATGGTAGCTACACAGCCTTGTgcatcttatgttgctattgttatatatgaaatttaaataaattctgttaacaatgttaaaaattgttgttgtacaacctttgcacttctaaatcgatcga
gi|4 : ggcatggtgtaattctctgacatttcttggcaaaggcaaacgggcacactctcagacatgctctataggagcaatgtctggggatcacacaggccaatcaatgttgtttgtttgaaggtaagcagtcatcctccaattgcaatgtgcaggggcatcaagttatcatgttagtagatttcaccagcatgtgggaaatggcacttcatgcagggcattggcaacaggaactaacacatggttaatgtAACCAATTTAGAAATGCAAA-GTTTGTACAATGATGATT-TC-AACAGTCTTAACAAATTTCAAATTTATT--CAAATT-TCATACACAGGAATTCCAA----TATGAAACACATAATCTGTGCA-AATTTCATTGACA------TATCGCAAT-AAATGGGCA-CATAACAACGTCCTCAATACCATCAGTGCTTCATGTCAAAT-TCACAAATT-ATAC--TGCTTGTATGATCACC--------CACTCGCAAC--ACAGACCAGACATCTACGTCTCACAGACAACACTATGGTAACTGTATGACCTTGTTGAATGTTTTTTCACTAATGAACGAGGGCACCGAGTAACTCTCTGATGTTTATAGACTGAGGTACGC---------------ATCATCTCA-----------AGCCCACCATCTG--AGCTCATTT---CAAACATGCACAATGGGAGCCATGCCTGGGTAT
gi|5 : AGATTCCACCAACGCGTAAAAAATGGTGCTTCGCAAATGGCATGGA-AACAGGAACTAGTACATTG-TTAATACACAAG-GTTGTATAGCTTCCACAGTGTCTTCTACGAGGCTTGGATGA--TTAGCCTGTATTGCGAGCAGAGGATCATACACACGGTAGTAAATTGTGAATTT------GAAGAACTGATGACATTAAATACGTTGTTTTG-TGCCCTT-TTATTGC--TATATCAATGAAATT-GGCACAGGGTATactgcagattcc
gi|5 : TTAACCAATTTAGAAATGCAAA-GGTTGTACAATGATGAGT-TT-AGCAGTGTTAACACAATTCAAATTGATT--CAAATT-TCATGCACAACAATAACTACATGTATAAAATGCATACCCTGTGCC-AATTTCATTGATA------TA--GCAATAAAA-GGGCA-CAAAACAACGTATTTAATGTCATCAGTTCT-----TCAAAT-TCACAATTTACTAC--CGTGTGTATGATCCTC--------TGCTCGCAAT--ACAGGCTAATCATCCAAGCCTCGTAGAAGACACTGTGGAAGCTATACAACCTTGTGgcattttatacatgtagttattgttgtgcatgaaatttgaatcaatttgaattgtgttaacactgctaaactcatcattgtacaacctttgcatttctaaattggttaa
gi|6 : agattccaccaacgcgtaaaaaatggtgcttcgcaaatggcatggaaacaggaactagtacattgttaataAACTGATTTAGAAACACAAA-GATTGTACAATGATGATT-TT-AACAGTGTTAACACAA----AAGTTATT--CAAATT-TCATACACAACAATAACCA----CATAAAATGCATAATCTGTGCA-AATTTCATTGGTT------TATCGCAATAAA-TGGGCA-CATAACAAGGTACTAAATACCATCGGTGCTTCATGTCAAAA-TCACAAATTAATAC--AGCATGTATGATCCCC--------CACTCGCAAT--ACAGCCTAAAAATCTACGCCTCATAGGCGACTCTATGATAGCT
gi|7 : tAACGGACTTATA---GCAAAAGGTTGTACAATTATAATT-TT-AACGGTGTTAACACAGTTTGAATTTATT--CAAATT-TAATACACAGGAGTAACAA----CAATAAACGCATAATCTATGTA-AATTT------TA------TATCACAAT-AAATGGACG-CATCTAAATGATCTGAATACCATCGGTGCTCCATGTCAAGT-TCGCAACTTAATACCACGCGTGAATGATCCGG--------AACTTGCA------AGGCTAGTCATCTACGTCTCATAGt
gi|8 : ACAGATTTAGAAACGTAAA-AGATGTACAATGAAGATT-TT-AA--GTGTTAACACAATTCAAATTTATT--CATATT-TCGTACACAATGATAACAA----CATAAAACGCACAA-----------------------------ATCGTAAT-AAATGGACA-CATCACAACATCCTGAATACCATCAATGTTTCATGTCAAAT-TCACAAATATATAC--CACGTACATGAT---------------TTG-------------AGA-ATTT-TGGCTCATAGACGACACTGTGGTAGCtgatagtaataaatgta
gi|9 : agATTTAACCGACTTAAAAACGCAAA-GGTTATACAGTGATGGAT-TT-AACTGTGTTATTACAAC--------ATT--CAAATT-TCTTTCACAACAAAAACGA----TATAAAACGGATAGTATTTGCA-ACGTTCTTTGATA------TATC-TAA-AAAATAGTCA-CGT---AACGTCCTGAATACCATCGATGTTTCATTTCCAAT-T
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GCTCTGATGGTTCCGATATCAAAGCATGGTGAC
Unaligned ( gi|19 ): TGGAGAGAGTACATGACGCAACTCTGATATTT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11111111 77777777777777777777777777777777777777777777777777777777 111 2 1 33333 1 22222 11 7777777777777777 555555 111111 1 1
lowQualScore : 2 2 2 2222 33 2 1 2 6666 3 999999 1 2 3 33 0 3 3 66 2 0 66666666 8888 0 1 4 0 1 99999999999999999999999999999999999999999999999999999999 777 1 1 1 0 6 6 0 3 6 33333 0 3 0 3 88888 1 3 88 0 1 0 33 8888888888888888 4 0 111111 55 0 22 0 1 333333 0 33 7 0 0 0
lowQualScore : . . . .... .. . . . .... . ...... . . . .. . . . .. . . ........ .... . . . . . ........................................................ ... . . . . . . . . . ..... . . . . ..... . . .. . . . .. ................ . . ...... .. . .. . . ...... . .. . . . .
lowQualScore : 4 5 5 2222 44 7 5 0 5555 3 666666 4 3 6 55 4 6 9 11 7 1 11111111 6666 1 1 2 2 0 00000000000000000000000000000000000000000000000000000000 555 2 0 0 7 7 7 7 3 7 33333 2 2 0 2 55555 2 2 00 2 2 8 55 0000000000000000 2 8 000000 55 2 22 2 0 222222 0 22 0 8 0 8
consensus : ACTCAACCGATTTAGAAACGCAAA-GGTTGTACAATGATGATT-TT-AACAGTGTTAACACAATTCAAATTTATT--CAAATT-TCATACACAACAATAACAA----TATAAAACGCATAATCTGTGCA-AATTTCATTGATA------TATCGCAATAAAATGGGCA-CATAACAACGTCCTGAATACCATCGGTGCTTCATGTCAAAT-TCACAAATTAATAC--CGCGTGTATGATCCCC--------CACTCGCAAT--ACAGGCTAGACATCTACGCCTCATAGACGACACTATGGTAGCTACACGACCTTGTGGAATGTTGTTCCACTCATGAACGAGGGCATCGCGTAACTCTCTGACGTTTCTTGGCNGAGGCACAC-------------GGA------CA-----------A-----------G--AG----TCT---CAGACATGCTCAATAGGAGCNATGTCTGGGGATNACACGGGCCAATCCATCACT-AAACGTTGTTTGTCTGAAGGTAAGCAGTCGTCCTCCGTTCGCGA-TGTGCAGGGGCAT-----TATCATGTTGGTAGATTTCACCAGCACGTGGGAAATGGCGCCTCACGAATGGCATTGG-AACGGGAACTAGCACA-TG-TTAATGTACAAGAGTTGTGTAGCTACCATAGTGTCGTCTATGAGGCGTAGA--A--CTAGCC-GTATTGCGAGCGGGGGATCATACACGCGGTATTAGTTTGTGAATTTGGC-A-GAAGAACCGATGGTATTCGGGACGNTGTTATG-TGCCCAT-TTATTGCGACATATCAATGAAATT-TGCACAGATTAT
Reference ( family-12260 ) : ACTCAACCGATTTAGAAACGCAAA-GGTTGTACAATGATGATT-TT-AACAGTGTTAACACAATTCAAATTTATT--CAAATT-TCATACACAACAATAACAA----TATAAAACGCATAATCTGTGCA-AATTTCATTGATA------TATCGCAATAAAATGGGCA-CATAACAACGTCCTGAATACCATCGGTGCTTCATGTCAAAT-TCACAAATTAATAC--CGCGTGTATGATCCCC--------CACTCGCAAT--ACAGGCTAGACATCTACGCCTCATAGACGACACTATGGTAGCTACACGACCTTGTGGAATGTTGTTCCACTCATGAACGAGGGCATCGCGTAACTCTCTGACGTTTCTTGGCNGAGGCACAC-------------GGA------CA-----------A-----------G--AG----TCT---CAGACATGCTCAATAGGAGCNATGTCTGGGGATNACACGGGCCAATCCATCACT-AAACGTTGTTTGTCTGAAGGTAAGCAGTCGTCCTCCGTTCGCGA-TGTGCAGGGGCAT-----TATCATGTTGGTAGATTTCACCAGCACGTGGGAAATGGCGCCTCACGAATGGCATTGG-AACGGGAACTAGCACA-TG-TTAATGTACAAGAGTTGTGTAGCTACCATAGTGTCGTCTATGAGGCGTAGA--A--CTAGCC-GTATTGCGAGCGGGGGATCATACACGCGGTATTAGTTTGTGAATTTGGC-A-GAAGAACCGATGGTATTCGGGACGNTGTTATG-TGCCCAT-TTATTGCGACATATCAATGAAATT-TGCACAGATTAT
gi|1 : ACTCAACCGATTC-GAAACGCAGA-GGTTGTACAATAATGCTTATT-TACAGTGTTGGCACATTTCAAATTCATT--CAAACT-TCATTCACAACAAAAACAA----TATAAAGCGCATAATCTGTTCA-AATTCCATTGTTA------TATCGCAAAAAAATGGGCA-TATTACAACG-CCTTATTACCGTCGGTGCTTCATGTCAGTT-TCACAAATTAATAC--CGCATGTATCACCCCCAACACCCACACTCGCAATTTACAGGCAAGACATCTACGTCCCATTAACGACACTGCTGTAGCTATACGACTTTGCGGAATATTGTTCCACTCATTAATGAGGCCATTGCGTAACTTAATGACATTTCTTGGCGGAGGCACAC-------------GGA------CA-----------A-----------G--AG----TCC---TAGATATGCCCAATAGGAGCCATGTCTGGGGATAACATGAGCCATTCCATCACTAAAACGTTGCTTGTCTGAAGGCAAGCAGCCGTTTTCCGTGCGCAATTATACTGGGGCAT-----TATTATGTTGGTAGATTTCACCAGCACTTGGGAAATGACGCCCCACGAATGACA-TGG-CACGGGAACTAGC----------ATGTAC-ATAGTTATTAAGCTGGCATAGTAGCGTTTATGAGTCGTA---------------TATTGTGAGTGGGTGATCGTACATGCAGCTCTGGTTTATGAATATGATAA-GAATCACCGATGGTACTCAGGGCGCTAT--------CTATATTATGGCGGCATATCAATTAACTT-TGCACAGACTAT
gi|10 : TCAACCGATGTAGAAACGCAAA-GGTTGTACAATGATGATT-TT-AATACTGTAAACACCATTATAATTTATT--CAAATT-TCA-----------AACAA----TATAAAACGCACAAACAAGGGA-AATTTCATAGATA------TGTCGCAAT-AAATTGGCA-CATAATAAAGTTCTGAATGCCATCAATGCTTCATGTCAGAT-TAACAa
gi|11 : taggAACCGATTCA-AAACGCACA-AGTTGTACAATGACGAGT-TG-AACAGTGTTAACACAAGTCAATTATTTT--CAACTT-TTATACACAA-AATAACAA----TA-AAAAT------TCTCTGTA-AATGTCATTGATA------TATCGCCATAAATTGG----CACAGCAACGTTTTGAATACCATC
gi|12 : TTAGTAACGCAAA-GGTTGAACAATGGTGATT-TT-AACAGTGTTAACACAATTCAGATCTTTT--CAAACTGTTA-AAACAGCAAAAACGA----TATAACACGAACAATATGTGCA-AATTACATTGATATACATGTATCGCAATAAAtt
gi|13 : gAACCGATTAAGAACCTCAAA-GACTGTACAATGATAGTT-TT-AACAGTGTTAAC-CACTTCAAATTTATT--CGAATT-TCATACACAGCAAAGGCAA----T-TCAAATGCATtg
gi|14 : CTCAACCGATTTAGAAACGCAAA-GGTTGTACACTGATGATT-TT-AA-AATGTTTACATAGTACACATTTAGT--CAAATT----TGCACAATAAAAATAgt
gi|15 : CAACCAATTTAAAAACGCAAA-GGGTGTACAATAATGATT-TT-AACAGTATTGACACA----------ATT--CAAATT-TCATACACAATAA
gi|16 : ACTCAACCGATATAGAAACGCAAA-GGTCGTATGATGATGATT-TT-AACAGTATTTACACAATTCAAATTCATT--Cg
gi|17 : cACTCAACCGACTTAGAAACGCAAA-GATTGAAC
gi|2 : TGAATACCATCGGTGCCTCGTGTCAAAAACCACAAATATGTAC--CCCATGTATTATGCCC--------CACTCGCAAT--ACAGGCTAGACATCTACGTCTCACAGACAACGCCATGGTAGCTGCACGACGTTGTGGAATGCTGTTCCACTCATGAACGAGTGCATTGCGTAACTCTCTCATGTTTCTTGGCTGAGGTACACTGGCAGTGATCCCAGA------CATACTCATTAGAA-----------GCAAG----TCTTTCCAGACATGTTCAATAGGAGCAATGTTTGAAGATTATACAGACTAACCCATCACTTAAACGTTGTTTGTCTGAAGGTAAGCATTCGCCCTCAGTTCGCGA-TGTGCAGGG-CAT-----TATCATGTTGTTGGATTTCACCAGCACGTGGAAAATGACGCCTCAGGAATGGCATTGA-AACGGGAACTAGCAC---G-TTAATGAACAAGA-TCGTGTAACTACTATAGTGCTG-GTATGAGGCGTTAA-------AG--------ACGAGCGGGGAATAATACATGCGGTATCAGTTTGTGAATTT--------------GATGGTATTTGGGACGATGTTATG-TGCCCAT-TTATTGCGATATATCAATG--GTTATGCACAGATTAg
gi|2 : aACTCAACCGATTAAGAAACGCAA------------------TT-TT-AGCAGTGTTATCACAATTGAAATTTATTTTCAAATG-TCATACACAACAATAACAC----TATAAGACGCGTAATCTGTGCATAA--CCATTGATA------TATCGCAAT-AAATGGGCA-CATAACATCGTCCCAAATACCA-------------TCAAAT-TCACAAACTGATAC--CGCATGTATTATTCCC--------CGCTCGT----------CT-----TTAACGCCTCATA-CCAGCACTATAGTAGTTACACGATCTTGTcgcgtcttatagtgttattgttgtgtatgacatttgaaaataaatttcaattgtgataacactgctaaaattgcgtttcttaatcggttgagt
gi|3 : atgaataccatcggtgcctcgtgtcaaaaaccacaaatatgtaccccatgtattatgccccactcgcaatacaggctagacatctacgtctcacagacaacgccatggtagctgcacgacgttgtggaatgctgttccactcatgaacgagtgcattgcgtaactctctcatgtttcttggctgaggtacactggcagtgatcccagacatactcattagaagcaagtctttccagacatgttcaataggagcaatgtttgaagattatacagactaacccatcacttaaacgttgtttgtctgaaggtaagcattcgccctcagttcgcgatgtgcagggcattatcatgttgttggatttcaccagcacgtggaaaatgacgcctcaggaatggcattgaaacgggaactagcacgttaatgaGGCATGGTGTAATTCTCTGACATTTCTTGGCAAAGGCAAAC-------------GGG------CA-----------C--------------AC----TCT---CAGACATGCTCTATAGGAGCAATGTCTGGGGATCACACAGGCCAATC---------AATGTTGTTTGTTTGAAGGTAAGCAGTCATCCTCCAATTGCAA-TGTGCAGGGGCATCAAGTTATCATGTTAGTAGATTTCACCAGCATGTGGGAAATGGCACTTCATGCAGGGCATTGGCAACAGGAACTAACACA-TGGTTAATGTACAAG-GCTGTGTAGCTACCATAGTATTGTCTATGAGGTGTAGA--AGTCTAGCCAGTATTATGAGTGGGGGATCATGCAAACGGTATTAATTTGTGAATTTGGC-ATGAAGAACCGATGATATCCAGAACAATG-TATGTTGCCCAT-TTATTGCGACATATCAATGGAATT-TGCACAGATTGT
gi|3 : TCGATCGATTTAGAAGTGCAAA-GGTTGTACAACAACAATT-TTTAACATTGTTAACA------GAATTTATT--TAAATT-TCATATATAACAATAGCAA----CATAAGATGCACAATCTGTGCA-AATTCCATTGATA------TGTCGCAATAAA-TGGGCAACATA-CATTGTTCTGGATATCATCGGTTCTTCATGCCAAAT-TCACAAATTAATAC--CGTTTGCATGATCCCC--------CACTCATAAT--ACTGGCTAGACTTCTACACCTCATAGACAATACTATGGTAGCTACACAGCCTTGTgcatcttatgttgctattgttatatatgaaatttaaataaattctgttaacaatgttaaaaattgttgttgtacaacctttgcacttctaaatcgatcga
gi|4 : ggcatggtgtaattctctgacatttcttggcaaaggcaaacgggcacactctcagacatgctctataggagcaatgtctggggatcacacaggccaatcaatgttgtttgtttgaaggtaagcagtcatcctccaattgcaatgtgcaggggcatcaagttatcatgttagtagatttcaccagcatgtgggaaatggcacttcatgcagggcattggcaacaggaactaacacatggttaatgtAACCAATTTAGAAATGCAAA-GTTTGTACAATGATGATT-TC-AACAGTCTTAACAAATTTCAAATTTATT--CAAATT-TCATACACAGGAATTCCAA----TATGAAACACATAATCTGTGCA-AATTTCATTGACA------TATCGCAAT-AAATGGGCA-CATAACAACGTCCTCAATACCATCAGTGCTTCATGTCAAAT-TCACAAATT-ATAC--TGCTTGTATGATCACC--------CACTCGCAAC--ACAGACCAGACATCTACGTCTCACAGACAACACTATGGTAACTGTATGACCTTGTTGAATGTTTTTTCACTAATGAACGAGGGCACCGAGTAACTCTCTGATGTTTATAGACTGAGGTACGC---------------ATCATCTCA-----------AGCCCACCATCTG--AGCTCATTT---CAAACATGCACAATGGGAGCCATGCCTGGGTAT
gi|5 : AGATTCCACCAACGCGTAAAAAATGGTGCTTCGCAAATGGCATGGA-AACAGGAACTAGTACATTG-TTAATACACAAG-GTTGTATAGCTTCCACAGTGTCTTCTACGAGGCTTGGATGA--TTAGCCTGTATTGCGAGCAGAGGATCATACACACGGTAGTAAATTGTGAATTT------GAAGAACTGATGACATTAAATACGTTGTTTTG-TGCCCTT-TTATTGC--TATATCAATGAAATT-GGCACAGGGTATactgcagattcc
gi|5 : TTAACCAATTTAGAAATGCAAA-GGTTGTACAATGATGAGT-TT-AGCAGTGTTAACACAATTCAAATTGATT--CAAATT-TCATGCACAACAATAACTACATGTATAAAATGCATACCCTGTGCC-AATTTCATTGATA------TA--GCAATAAAA-GGGCA-CAAAACAACGTATTTAATGTCATCAGTTCT-----TCAAAT-TCACAATTTACTAC--CGTGTGTATGATCCTC--------TGCTCGCAAT--ACAGGCTAATCATCCAAGCCTCGTAGAAGACACTGTGGAAGCTATACAACCTTGTGgcattttatacatgtagttattgttgtgcatgaaatttgaatcaatttgaattgtgttaacactgctaaactcatcattgtacaacctttgcatttctaaattggttaa
gi|6 : agattccaccaacgcgtaaaaaatggtgcttcgcaaatggcatggaaacaggaactagtacattgttaataAACTGATTTAGAAACACAAA-GATTGTACAATGATGATT-TT-AACAGTGTTAACACAA----AAGTTATT--CAAATT-TCATACACAACAATAACCA----CATAAAATGCATAATCTGTGCA-AATTTCATTGGTT------TATCGCAATAAA-TGGGCA-CATAACAAGGTACTAAATACCATCGGTGCTTCATGTCAAAA-TCACAAATTAATAC--AGCATGTATGATCCCC--------CACTCGCAAT--ACAGCCTAAAAATCTACGCCTCATAGGCGACTCTATGATAGCT
gi|7 : tAACGGACTTATA---GCAAAAGGTTGTACAATTATAATT-TT-AACGGTGTTAACACAGTTTGAATTTATT--CAAATT-TAATACACAGGAGTAACAA----CAATAAACGCATAATCTATGTA-AATTT------TA------TATCACAAT-AAATGGACG-CATCTAAATGATCTGAATACCATCGGTGCTCCATGTCAAGT-TCGCAACTTAATACCACGCGTGAATGATCCGG--------AACTTGCA------AGGCTAGTCATCTACGTCTCATAGt
gi|8 : ACAGATTTAGAAACGTAAA-AGATGTACAATGAAGATT-TT-AA--GTGTTAACACAATTCAAATTTATT--CATATT-TCGTACACAATGATAACAA----CATAAAACGCACAA-----------------------------ATCGTAAT-AAATGGACA-CATCACAACATCCTGAATACCATCAATGTTTCATGTCAAAT-TCACAAATATATAC--CACGTACATGAT---------------TTG-------------AGA-ATTT-TGGCTCATAGACGACACTGTGGTAGCtgatagtaataaatgta
gi|9 : agATTTAACCGACTTAAAAACGCAAA-GGTTATACAGTGATGGAT-TT-AACTGTGTTATTACAAC--------ATT--CAAATT-TCTTTCACAACAAAAACGA----TATAAAACGGATAGTATTTGCA-ACGTTCTTTGATA------TATC-TAA-AAAATAGTCA-CGT---AACGTCCTGAATACCATCGATGTTTCATTTCCAAT-T
blockSeqs : A . T ATTA TT G C T CATG T TACATG A A A AA A T CA A . AT C T T TGGCAGTGATCCCAGACATACTCATTAGAAGCAAG TTC T A T C T . G CAAGT T C A ATGG A A A A TC AGAAGTCTAGCCAG T GGCAT GA TG A TTATG . GA G A
blockSeqs : . . . AGTC . . C A . . . A T . AG . G . A . AT C G A ATCATCTCAAGCCCACCATCTGAGCTCA . T A C . . . . . T . A ATTG T A G A TC GGATGATTAGCCTG A . GA CA A TATGT . GA A .
blockSeqs : . . . ATTC . . T A . . . A A . AA . A . T . AC C C T GGGCACAC . A C T . A G C A G T G TAAAG C . . AA T TTTTG . . . .
blockSeqs : . . . CTTC . . T A . . . A A . AA . A . T . AT C
blockSeqs : . . . GTAC . . C T . . . A A . AA . A . G . AT A
blockSeqs : . . . ATTC . . C T . . . A A . AA . A . A . . C
blockSeqs : . . . ATTG . . G T . . . . A . CT . T . G . . .
blockSeqs : . . . TTTC . . C T . . . . A . CA . . . G . . .
blockSeqs : . . . ATTC . . C T . . . . . . A .
blockSeqs : . . . GTTT . . G T . . . . . . . .
blockSeqs : . . . ATTC . . T T . . . .
blockSeqs : . . . AC . . C A .
blockSeqs : . . . A . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . .
blockSeqs : .
blockSeqCons : ******** AT**
originalCons : ACTCAACCGATTTAGAAACGCAAA-GGTTGTACAATGATGATT-TT-AACAGTGTTAACACAATTCAAATTTATT--CAAATT-TCATACACAACAATAACAA----TATAAAACGCATAATCTGTGCA-AATTTCATTGATA------TATCGCAATAAAATGGGCA-CATAACAACGTCCTGAATACCATCGGTGCTTCATGTCAAAT-TCACAAATTAATAC--CGCGTGTATGATCCCC--------CACTCGCAAT--ACAGGCTAGACATCTACGCCTCATAGACGACACTATGGTAGCTACACGACCTTGTGGAATGTTGTTCCACTCATGAACGAGGGCATCGCGTAACTCTCTGACGTTTCTTGGCNGAGGCACAC-------------GGA------CA-----------A-----------G--AG----TCT---CAGACATGCTCAATAGGAGCNATGTCTGGGGATNACACGGGCCAATCCATCACT-AAACGTTGTTTGTCTGAAGGTAAGCAGTCGTCCTCCGTTCGCGA-TGTGCAGGGGCAT-----TATCATGTTGGTAGATTTCACCAGCACGTGGGAAATGGCGCCTCACGAATGGCATTGG-AACGGGAACTAGCACA-TG-TTAATGTACAAGAGTTGTGTAGCTACCATAGTGTCGTCTATGAGGCGTAGA--A--CTAGCC-GTATTGCGAGCGGGGGATCATACACGCGGTATTAGTTTGTGAATTTGGC-A-GAAGAACCGATGGTATTCGGGACGNTGTTATG-TGCCCAT-TTATTGCGACATATCAATGAAATT-TGCACAGATTAT
finalCons : ACTCAACCGATTTAGAAACGCAAA-GGTTGTACAATGATGATT-TT-AACAGTGTTAACACAATTCAAATTTATT--CAAATT-TCATACACAACAATAACAA----TATAAAACGCATAATCTGTGCA-AATTTCATTGATA------TATCGCAATAAAATGGGCA-CATAACAACGTCCTGAATACCATCGGTGCTTCATGTCAAAT-TCACAAATTAATAC--CGCGTGTATGATCCCC--------CACTCGCAAT--ACAGGCTAGACATCTACGCCTCATAGACGACACTATGGTAGCTACACGACCTTGTGGAATGTTGTTCCACTCATGAACGAGGGCATCGCGTAACTCTCTGACGTTTCTTGGCNGAGGCACAC-------------GGA------CA-----------A-----------G--AG----TCT---CAGACATGCTCAATAGGAGCNATGTCTGGGGATNACACGGGCCAATCCATCACT-AAACGTTGTTTGTCTGAAGGTAAGCAGTCGTCCTCCGTTCGCGA-TGTGCAGGGGCAT-----TATCATGTTGGTAGATTTCACCAGCACGTGGGAAATGGCGCCTCACGAATGGCATTGG-AACGGGAACTAGCACA-TG-TTAATGTACAAGAGTTGTGTAGCTACCATAGTGTCGTCTATGAGGCGTAGA--A--CTAGCC-GTATTGCGAGCGGGGGATCATACACGCGGTATTAGTTTGTGAATTTGGC-A-GAAGAACCGATGGTATTCGGGACGNTGTTATG-TGCCCAT-TTATTGCGACATATCAATGAAATT-TGCACAGATTAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GCTCTGATGGTTCCGATATCAAAGCATGGTGAC
Unaligned ( gi|19 ): TGGAGAGAGTACATGACGCAACTCTGATATTT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11111111 77777777777777777777777777777777777777777777777777777777 111 2 1 33333 1 22222 11 7777777777777777 555555 111111 1 1
lowQualScore : 2 2 2 2222 33 2 1 2 6666 3 999999 1 2 3 33 0 3 3 66 2 0 66666666 8888 0 1 4 0 1 99999999999999999999999999999999999999999999999999999999 777 1 1 1 0 6 6 0 3 6 33333 0 3 0 3 88888 1 3 88 0 1 0 33 8888888888888888 4 0 111111 55 0 22 0 1 333333 0 33 7 0 0 0
lowQualScore : . . . .... .. . . . .... . ...... . . . .. . . . .. . . ........ .... . . . . . ........................................................ ... . . . . . . . . . ..... . . . . ..... . . .. . . . .. ................ . . ...... .. . .. . . ...... . .. . . . .
lowQualScore : 4 5 5 2222 44 7 5 0 5555 3 666666 4 3 6 55 4 6 9 11 7 1 11111111 6666 1 1 2 2 0 00000000000000000000000000000000000000000000000000000000 555 2 0 0 7 7 7 7 3 7 33333 2 2 0 2 55555 2 2 00 2 2 8 55 0000000000000000 2 8 000000 55 2 22 2 0 222222 0 22 0 8 0 8
consensus : ACTCAACCGATTTAGAAACGCAAA-GGTTGTACAATGATGATT-TT-AACAGTGTTAACACAATTCAAATTTATT--CAAATT-TCATACACAACAATAACAA----TATAAAACGCATAATCTGTGCA-AATTTCATTGATA------TATCGCAATAAAATGGGCA-CATAACAACGTCCTGAATACCATCGGTGCTTCATGTCAAAT-TCACAAATTAATAC--CGCGTGTATGATCCCC--------CACTCGCAAT--ACAGGCTAGACATCTACGCCTCATAGACGACACTATGGTAGCTACACGACCTTGTGGAATGTTGTTCCACTCATGAACGAGGGCATCGCGTAACTCTCTGACGTTTCTTGGCNGAGGCACAC-------------GGA------CA-----------A-----------G--AG----TCT---CAGACATGCTCAATAGGAGCNATGTCTGGGGATNACACGGGCCAATCCATCACT-AAACGTTGTTTGTCTGAAGGTAAGCAGTCGTCCTCCGTTCGCGA-TGTGCAGGGGCAT-----TATCATGTTGGTAGATTTCACCAGCACGTGGGAAATGGCGCCTCACGAATGGCATTGG-AACGGGAACTAGCACA-TG-TTAATGTACAAGAGTTGTGTAGCTACCATAGTGTCGTCTATGAGGCGTAGA--A--CTAGCC-GTATTGCGAGCGGGGGATCATACACGCGGTATTAGTTTGTGAATTTGGC-A-GAAGAACCGATGGTATTCGGGACGNTGTTATG-TGCCCAT-TTATTGCGACATATCAATGAAATT-TGCACAGATTAT
Reference ( family-12260 ) : ACTCAACCGATTTAGAAACGCAAA-GGTTGTACAATGATGATT-TT-AACAGTGTTAACACAATTCAAATTTATT--CAAATT-TCATACACAACAATAACAA----TATAAAACGCATAATCTGTGCA-AATTTCATTGATA------TATCGCAATAAAATGGGCA-CATAACAACGTCCTGAATACCATCGGTGCTTCATGTCAAAT-TCACAAATTAATAC--CGCGTGTATGATCCCC--------CACTCGCAAT--ACAGGCTAGACATCTACGCCTCATAGACGACACTATGGTAGCTACACGACCTTGTGGAATGTTGTTCCACTCATGAACGAGGGCATCGCGTAACTCTCTGACGTTTCTTGGCNGAGGCACAC-------------GGA------CA-----------A-----------G--AG----TCT---CAGACATGCTCAATAGGAGCNATGTCTGGGGATNACACGGGCCAATCCATCACT-AAACGTTGTTTGTCTGAAGGTAAGCAGTCGTCCTCCGTTCGCGA-TGTGCAGGGGCAT-----TATCATGTTGGTAGATTTCACCAGCACGTGGGAAATGGCGCCTCACGAATGGCATTGG-AACGGGAACTAGCACA-TG-TTAATGTACAAGAGTTGTGTAGCTACCATAGTGTCGTCTATGAGGCGTAGA--A--CTAGCC-GTATTGCGAGCGGGGGATCATACACGCGGTATTAGTTTGTGAATTTGGC-A-GAAGAACCGATGGTATTCGGGACGNTGTTATG-TGCCCAT-TTATTGCGACATATCAATGAAATT-TGCACAGATTAT
gi|1 : ACTCAACCGATTC-GAAACGCAGA-GGTTGTACAATAATGCTTATT-TACAGTGTTGGCACATTTCAAATTCATT--CAAACT-TCATTCACAACAAAAACAA----TATAAAGCGCATAATCTGTTCA-AATTCCATTGTTA------TATCGCAAAAAAATGGGCA-TATTACAACG-CCTTATTACCGTCGGTGCTTCATGTCAGTT-TCACAAATTAATAC--CGCATGTATCACCCCCAACACCCACACTCGCAATTTACAGGCAAGACATCTACGTCCCATTAACGACACTGCTGTAGCTATACGACTTTGCGGAATATTGTTCCACTCATTAATGAGGCCATTGCGTAACTTAATGACATTTCTTGGCGGAGGCACAC-------------GGA------CA-----------A-----------G--AG----TCC---TAGATATGCCCAATAGGAGCCATGTCTGGGGATAACATGAGCCATTCCATCACTAAAACGTTGCTTGTCTGAAGGCAAGCAGCCGTTTTCCGTGCGCAATTATACTGGGGCAT-----TATTATGTTGGTAGATTTCACCAGCACTTGGGAAATGACGCCCCACGAATGACA-TGG-CACGGGAACTAGC----------ATGTAC-ATAGTTATTAAGCTGGCATAGTAGCGTTTATGAGTCGTA---------------TATTGTGAGTGGGTGATCGTACATGCAGCTCTGGTTTATGAATATGATAA-GAATCACCGATGGTACTCAGGGCGCTAT--------CTATATTATGGCGGCATATCAATTAACTT-TGCACAGACTAT
gi|10 : TCAACCGATGTAGAAACGCAAA-GGTTGTACAATGATGATT-TT-AATACTGTAAACACCATTATAATTTATT--CAAATT-TCA-----------AACAA----TATAAAACGCACAAACAAGGGA-AATTTCATAGATA------TGTCGCAAT-AAATTGGCA-CATAATAAAGTTCTGAATGCCATCAATGCTTCATGTCAGAT-TAACAa
gi|11 : taggAACCGATTCA-AAACGCACA-AGTTGTACAATGACGAGT-TG-AACAGTGTTAACACAAGTCAATTATTTT--CAACTT-TTATACACAA-AATAACAA----TA-AAAAT------TCTCTGTA-AATGTCATTGATA------TATCGCCATAAATTGG----CACAGCAACGTTTTGAATACCATC
gi|12 : TTAGTAACGCAAA-GGTTGAACAATGGTGATT-TT-AACAGTGTTAACACAATTCAGATCTTTT--CAAACTGTTA-AAACAGCAAAAACGA----TATAACACGAACAATATGTGCA-AATTACATTGATATACATGTATCGCAATAAAtt
gi|13 : gAACCGATTAAGAACCTCAAA-GACTGTACAATGATAGTT-TT-AACAGTGTTAAC-CACTTCAAATTTATT--CGAATT-TCATACACAGCAAAGGCAA----T-TCAAATGCATtg
gi|14 : CTCAACCGATTTAGAAACGCAAA-GGTTGTACACTGATGATT-TT-AA-AATGTTTACATAGTACACATTTAGT--CAAATT----TGCACAATAAAAATAgt
gi|15 : CAACCAATTTAAAAACGCAAA-GGGTGTACAATAATGATT-TT-AACAGTATTGACACA----------ATT--CAAATT-TCATACACAATAA
gi|16 : ACTCAACCGATATAGAAACGCAAA-GGTCGTATGATGATGATT-TT-AACAGTATTTACACAATTCAAATTCATT--Cg
gi|17 : cACTCAACCGACTTAGAAACGCAAA-GATTGAAC
gi|2 : TGAATACCATCGGTGCCTCGTGTCAAAAACCACAAATATGTAC--CCCATGTATTATGCCC--------CACTCGCAAT--ACAGGCTAGACATCTACGTCTCACAGACAACGCCATGGTAGCTGCACGACGTTGTGGAATGCTGTTCCACTCATGAACGAGTGCATTGCGTAACTCTCTCATGTTTCTTGGCTGAGGTACACTGGCAGTGATCCCAGA------CATACTCATTAGAA-----------GCAAG----TCTTTCCAGACATGTTCAATAGGAGCAATGTTTGAAGATTATACAGACTAACCCATCACTTAAACGTTGTTTGTCTGAAGGTAAGCATTCGCCCTCAGTTCGCGA-TGTGCAGGG-CAT-----TATCATGTTGTTGGATTTCACCAGCACGTGGAAAATGACGCCTCAGGAATGGCATTGA-AACGGGAACTAGCAC---G-TTAATGAACAAGA-TCGTGTAACTACTATAGTGCTG-GTATGAGGCGTTAA-------AG--------ACGAGCGGGGAATAATACATGCGGTATCAGTTTGTGAATTT--------------GATGGTATTTGGGACGATGTTATG-TGCCCAT-TTATTGCGATATATCAATG--GTTATGCACAGATTAg
gi|2 : aACTCAACCGATTAAGAAACGCAA------------------TT-TT-AGCAGTGTTATCACAATTGAAATTTATTTTCAAATG-TCATACACAACAATAACAC----TATAAGACGCGTAATCTGTGCATAA--CCATTGATA------TATCGCAAT-AAATGGGCA-CATAACATCGTCCCAAATACCA-------------TCAAAT-TCACAAACTGATAC--CGCATGTATTATTCCC--------CGCTCGT----------CT-----TTAACGCCTCATA-CCAGCACTATAGTAGTTACACGATCTTGTcgcgtcttatagtgttattgttgtgtatgacatttgaaaataaatttcaattgtgataacactgctaaaattgcgtttcttaatcggttgagt
gi|3 : atgaataccatcggtgcctcgtgtcaaaaaccacaaatatgtaccccatgtattatgccccactcgcaatacaggctagacatctacgtctcacagacaacgccatggtagctgcacgacgttgtggaatgctgttccactcatgaacgagtgcattgcgtaactctctcatgtttcttggctgaggtacactggcagtgatcccagacatactcattagaagcaagtctttccagacatgttcaataggagcaatgtttgaagattatacagactaacccatcacttaaacgttgtttgtctgaaggtaagcattcgccctcagttcgcgatgtgcagggcattatcatgttgttggatttcaccagcacgtggaaaatgacgcctcaggaatggcattgaaacgggaactagcacgttaatgaGGCATGGTGTAATTCTCTGACATTTCTTGGCAAAGGCAAAC-------------GGG------CA-----------C--------------AC----TCT---CAGACATGCTCTATAGGAGCAATGTCTGGGGATCACACAGGCCAATC---------AATGTTGTTTGTTTGAAGGTAAGCAGTCATCCTCCAATTGCAA-TGTGCAGGGGCATCAAGTTATCATGTTAGTAGATTTCACCAGCATGTGGGAAATGGCACTTCATGCAGGGCATTGGCAACAGGAACTAACACA-TGGTTAATGTACAAG-GCTGTGTAGCTACCATAGTATTGTCTATGAGGTGTAGA--AGTCTAGCCAGTATTATGAGTGGGGGATCATGCAAACGGTATTAATTTGTGAATTTGGC-ATGAAGAACCGATGATATCCAGAACAATG-TATGTTGCCCAT-TTATTGCGACATATCAATGGAATT-TGCACAGATTGT
gi|3 : TCGATCGATTTAGAAGTGCAAA-GGTTGTACAACAACAATT-TTTAACATTGTTAACA------GAATTTATT--TAAATT-TCATATATAACAATAGCAA----CATAAGATGCACAATCTGTGCA-AATTCCATTGATA------TGTCGCAATAAA-TGGGCAACATA-CATTGTTCTGGATATCATCGGTTCTTCATGCCAAAT-TCACAAATTAATAC--CGTTTGCATGATCCCC--------CACTCATAAT--ACTGGCTAGACTTCTACACCTCATAGACAATACTATGGTAGCTACACAGCCTTGTgcatcttatgttgctattgttatatatgaaatttaaataaattctgttaacaatgttaaaaattgttgttgtacaacctttgcacttctaaatcgatcga
gi|4 : ggcatggtgtaattctctgacatttcttggcaaaggcaaacgggcacactctcagacatgctctataggagcaatgtctggggatcacacaggccaatcaatgttgtttgtttgaaggtaagcagtcatcctccaattgcaatgtgcaggggcatcaagttatcatgttagtagatttcaccagcatgtgggaaatggcacttcatgcagggcattggcaacaggaactaacacatggttaatgtAACCAATTTAGAAATGCAAA-GTTTGTACAATGATGATT-TC-AACAGTCTTAACAAATTTCAAATTTATT--CAAATT-TCATACACAGGAATTCCAA----TATGAAACACATAATCTGTGCA-AATTTCATTGACA------TATCGCAAT-AAATGGGCA-CATAACAACGTCCTCAATACCATCAGTGCTTCATGTCAAAT-TCACAAATT-ATAC--TGCTTGTATGATCACC--------CACTCGCAAC--ACAGACCAGACATCTACGTCTCACAGACAACACTATGGTAACTGTATGACCTTGTTGAATGTTTTTTCACTAATGAACGAGGGCACCGAGTAACTCTCTGATGTTTATAGACTGAGGTACGC---------------ATCATCTCA-----------AGCCCACCATCTG--AGCTCATTT---CAAACATGCACAATGGGAGCCATGCCTGGGTAT
gi|5 : AGATTCCACCAACGCGTAAAAAATGGTGCTTCGCAAATGGCATGGA-AACAGGAACTAGTACATTG-TTAATACACAAG-GTTGTATAGCTTCCACAGTGTCTTCTACGAGGCTTGGATGA--TTAGCCTGTATTGCGAGCAGAGGATCATACACACGGTAGTAAATTGTGAATTT------GAAGAACTGATGACATTAAATACGTTGTTTTG-TGCCCTT-TTATTGC--TATATCAATGAAATT-GGCACAGGGTATactgcagattcc
gi|5 : TTAACCAATTTAGAAATGCAAA-GGTTGTACAATGATGAGT-TT-AGCAGTGTTAACACAATTCAAATTGATT--CAAATT-TCATGCACAACAATAACTACATGTATAAAATGCATACCCTGTGCC-AATTTCATTGATA------TA--GCAATAAAA-GGGCA-CAAAACAACGTATTTAATGTCATCAGTTCT-----TCAAAT-TCACAATTTACTAC--CGTGTGTATGATCCTC--------TGCTCGCAAT--ACAGGCTAATCATCCAAGCCTCGTAGAAGACACTGTGGAAGCTATACAACCTTGTGgcattttatacatgtagttattgttgtgcatgaaatttgaatcaatttgaattgtgttaacactgctaaactcatcattgtacaacctttgcatttctaaattggttaa
gi|6 : agattccaccaacgcgtaaaaaatggtgcttcgcaaatggcatggaaacaggaactagtacattgttaataAACTGATTTAGAAACACAAA-GATTGTACAATGATGATT-TT-AACAGTGTTAACACAA----AAGTTATT--CAAATT-TCATACACAACAATAACCA----CATAAAATGCATAATCTGTGCA-AATTTCATTGGTT------TATCGCAATAAA-TGGGCA-CATAACAAGGTACTAAATACCATCGGTGCTTCATGTCAAAA-TCACAAATTAATAC--AGCATGTATGATCCCC--------CACTCGCAAT--ACAGCCTAAAAATCTACGCCTCATAGGCGACTCTATGATAGCT
gi|7 : tAACGGACTTATA---GCAAAAGGTTGTACAATTATAATT-TT-AACGGTGTTAACACAGTTTGAATTTATT--CAAATT-TAATACACAGGAGTAACAA----CAATAAACGCATAATCTATGTA-AATTT------TA------TATCACAAT-AAATGGACG-CATCTAAATGATCTGAATACCATCGGTGCTCCATGTCAAGT-TCGCAACTTAATACCACGCGTGAATGATCCGG--------AACTTGCA------AGGCTAGTCATCTACGTCTCATAGt
gi|8 : ACAGATTTAGAAACGTAAA-AGATGTACAATGAAGATT-TT-AA--GTGTTAACACAATTCAAATTTATT--CATATT-TCGTACACAATGATAACAA----CATAAAACGCACAA-----------------------------ATCGTAAT-AAATGGACA-CATCACAACATCCTGAATACCATCAATGTTTCATGTCAAAT-TCACAAATATATAC--CACGTACATGAT---------------TTG-------------AGA-ATTT-TGGCTCATAGACGACACTGTGGTAGCtgatagtaataaatgta
gi|9 : agATTTAACCGACTTAAAAACGCAAA-GGTTATACAGTGATGGAT-TT-AACTGTGTTATTACAAC--------ATT--CAAATT-TCTTTCACAACAAAAACGA----TATAAAACGGATAGTATTTGCA-ACGTTCTTTGATA------TATC-TAA-AAAATAGTCA-CGT---AACGTCCTGAATACCATCGATGTTTCATTTCCAAT-T
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GCTCTGATGGTTCCGATATCAAAGCATGGTGAC
Unaligned ( gi|19 ): TGGAGAGAGTACATGACGCAACTCTGATATTT