lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 1 111 1 1 222 111111 11111111 111111111111111 333333333333333333333333333333333333333333333333333333333333333333333333333 222222222 11 1111111 1 1
lowQualScore : 111 1 0 000 7 5 7 7 5 4 55 000 4 4 111111 55 4 4 4 44444444 999999999999999 5 2 5 1 3 7 5 44 111111111111111111111111111111111111111111111111111111111111111111111111111 000000000 4 3 55 3 4444444 2 33 888 555 1 2 99999999 7 444 2 5 2 3 1 4444 2 5555 444 444 666666 2 5
lowQualScore : ... . . ... . . . . . . .. ... . . ...... .. . . . ........ ............... . . . . . . . .. ........................................................................... ......... . . .. . ....... . .. ... ... . . ........ . ... . . . . . .... . .... ... ... ...... . .
lowQualScore : 777 7 1 000 4 0 0 0 0 0 00 222 0 0 555555 55 0 0 0 55555555 444444444444444 2 3 6 0 6 6 6 22 444444444444444444444444444444444444444444444444444444444444444444444444444 000000000 0 1 77 3 3333333 7 99 111 000 0 7 11111111 5 777 7 1 4 9 2 7777 4 0000 111 111 888888 8 4
consensus : TACTCCAACTTGAGAAGCACAAT---GGCGAATGAACTTCGTAATATAACTACAATA---TCTCTCGACATTTTACTTTT-TGGCAATTGTAATCTATCTTTACAGCAAAATAATGCGATCTTCAAATCTGTTCATAACTACATTATTAAGAGCAATCGATTCTCTTAAGGTGGCCTCTTGTAGT-CTTATATA--TATN--TTTTATTT-A-TA------GTTT--TA-TAT-A-TA--------CATGTAC----T----------AATGTGGAACCAATAGCTAANTTCCCGCGGTCTACG-GATCGCCCCCGGTACGGCTCGTCAGACTTCCCTTCGACATCAGC--AGTAAAA------------GCCCGACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------G--------------CAATTTAGAATTAATA---------TAATAAATA-CAAACTTTTNT-TCTN------CTAATTTTCTA--CAC--AA---TTTATTAAC-GTAAATTAGGTACTGAA--------ACATTACCAATNACATTAAACGT---TTA-TCTGCCATCATTGTATCTGTTTAAGCATGGAGCGGATTTACATAAGCATGCTTTCAATCC-AATCCATTTTCTGTCTGTGT----ATCAT-TCTTACA----GCTTAT---AAAATATTACATGTTAT---TGT------ATTGTAACATATAGATATTGAAATAAAATATGTTTAAACT
Reference ( gi|3 ) : TACTCCAACTTGAGAAGCACAAT---GGCGAATGAACTTCGTAATATAACTACACTA---TCTCTTGACATTTTACTTTT-TGGCAATTGTAATCTATCTTTACAGCAAAACAATGCGATCTTCAAATCTGTTCATATCTACAGTATTAAGAGCAATCGATTCTCTTAAGGTGGCCTCTTGTAGT-CTTATATA--TATA--TTTTATTT-A-TA------GTTT--TA-TAT-A-TA--------CATGTAC----T----------AATGTGGAACCAATAGCTAAATTCTCACGGTCTACG-GATTGCCCCCAGTACGACTCGTCAGACTTCCCTTTGACATCAGC--AGTAAAA------------GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------G--------------CAATTTAGAATTAATA---------TAATAAATA-TAAACTTTAGT-TCTA------CTAACTTTCTA--CAT--AA---TTTATTAAC-GTAAATTAGGTACTGAA--------ACATTACCAATAACATTAAACGT---TTA-TCTGCCATCATTGTATCTGTTTAAGCATAGAGCGGATTTACATAAGCATGCTTTCAATCC-AATCCATTTTATATCTGTGT----ATCAT-TCTTACA----GCTTAT---AAAATATTACATGTTAT---TGT------ATTGCAACATATAGATAATGAAATAAAATATGTTCAAACT
gi|1 : TACTCCAACTTGAGAAGCACAA
gi|5 : ttgcTACTCCAACTTGAGAAGCAAAAT---GACGAATGAACTTCGTAATATAACTACAATA---TCTCTCGACATTTTACTTTT-CGGCAATTGTAATCTATCTTTAGAGCAAAATAATGCGATCTTCAAATCTGTTCATAACTACATTATTAAGAGCAATCGATTGTCTTAAGGTGGTCTCTTGTAGT-CTTATATA--TATT--TTTTATTT-A-TA------GTTTTATA-TAT-A-TA--------TATGTAC----T----------TATGTGGAACCAATACATTATTTCCCGCGGTCTATG-GATCGCCCCCCGTATGGCTCGTCAGACTTCCCTTTGACATCAGC--AGTAAAA------------GCCCGACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------NNNNNNNNNNNNNNTCAATTTAGAATTAATA---------TAATAAATA-CAAACTTTTGT-TCTA------CTAAC-------------AA---TTTATTAAA-GTAAATTAGGTACTGAA--------ACATTACCAATAATATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgattctcttaaggtggcctcttgtagtcttatatatattatttatggttttatatataattatatacatgtactaatgtggaaccaatagctaaattctcgcggtctacggattgcccccggtacggctcgtcagacttccctttgacatcagcagtaaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcaatttagaattaatataataaatataaacttttgttctactaacattctacgtaatttattaacgtaaattaggtactgaaacattaccaaaaacattaaacgtttatctgtcatcattgtatctgtttaagcatggagcggatttacataagcatgctttcaatccaatccattttctatctatgtatcattcttacagcttataaaatattacatgttattgtattgcaacataaagataatgaaataaaatatgtttaaactttcttaatacgagttcatttatgaaaattggaagagattggtcaccaaacagcattatatcaacagatacgttatgatgttgttgaataccggtagcagctatcattttgtttctttgaacagtgtgcaatggacattgtaaaagataatatttcgtatcttcaatacttccgcatgcacatatgggactatctattttttttttcaatacaggtgtttcttgaggttgctg
gi|7 : gcTACTCCAACTTGAGAAGCACAAT---GGCGAATGAACTTCGTAATATAACTACACTA---TCTCTCGACATTTTACTTTT-TGGCAATTGTAATCTATCTTTACAGCAAAATAATGCGATCTTCAAATCTGTTCATAACTACATTATTAAGAGCAATCGATTCTCTTAAGGTGGCCTCTTGTAGT-CTTATATA--TTTT--TTTTATTT-A-TA------GTTT--TA-TAT-A-TA--------CATGTAC----T----------AATATGGAACCAATAGCTAAATTTTTGCGGTCTGCG-GATTGCCCCTGGTACGGCTCGTCTGACTTCCCTTTGACATCAGC--AGTAAA
gi|2 : gcTACTCCAACTAGAGAAATACATT---TTCAAATGAACTTCGTAATATAACTACAATA---TCTCTCGACATTTTACTTTT-TGGCAATTGTAATCTATCTTTACAGCAAAAAAATGCGATCTTCAAATCTGTTCATAACTACATTATTAAGAGCAATCGATGCTCTTAAAGTGGTCTCTTGTTGT-CCTAGATACTTATAGTTTTTGTTTTA-TA------------TA-TAT-AGTA--------CATGGAA----TGTGAGTGTAAAATGTGGAACTACTAGCTCATTTCCCACGGTCTATG-GATCGCCCC-GGTATGGGTCGTCAGACTTCCCTTTGACATCAGC--AGTAAAA------------G
gi|14 : cttgcTACTCCAACTTGAGAAGCACAATTATGGCGAATGAACTTCGTAATATAACTACAATA---TCTCTCGGCATTTTACTTTT-TGGCAGTTGTAATCTATCTTTACAGCAAAATAATGCGATCTTCAAATCTATTCATAACTACATTATTAAGAGCAATCGATTCTCTTAAGGTGGCCTCTTGTAGT-CTTATATA--TAT---TTTTATTT-A-TA------GTTT--TA-TAT-A-TA--------CATGTAC----T----------AATGcccgacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatttaaagtttatataataaatactactttttttgtcttaattttctacacaatattttcacgttaattaggtactgagacattaccaattacattaaacgtttatctgccatcattgtactagttttttacggttttacataagctagctttcaatccaatccattttctgtctgtgtatcattcttacagcttataaaatattacatgttattgtcacatgattgtaacatatagatactgaaata
gi|19 : cttgcTACT--AACTTAAAAAATACTAA---GACGAATGAACTTCGTAACATAACTTCAATA---TCTCTCGACAGTTAACTTTTTTGGCAATTGCAATCTATCTTTACAGCTAAATAATGCGATCTTCAAATCGGTTCAGAATTACATTATTAGGAGCAGTCGATTCTCTTATGATGGCCCCTTGTAGTCCTTATATA--TATA--gtg
gi|8 : tTGAGAAGCACAAT---GGCCAATGAACTTCGTAATATAACTACAATA---TCTCTCGACATTTTACTTTT-TGGCAATTGTAATCTATCTTTACAGCAAAATAATGCGATCTTCAAATCTGTTCATAACTACATTATTAAGAGCAATCGATTCTCTTAAGGTGGCCTCTTGTAGT-CTAATATA--TATT--TTTTATTT-A-TA------GTTT--TA-TAT-A-TA--------CA--------------------AATGTGGAACCAATTACTAAATTCTCGCGGTCTAAG-GATTGCCCCCGGTACGGCTCGTCAGACTTCCCTTTGACATCAGC--AGTAAAA------------
gi|32 : TCGTAGTATAACT---TTAAATTCTCTAGATACTTTACATTC-TGGCAATAGTAATCTGTCATTGCAGCAAAATAAT
gi|13 : TCTCGGCATTTTACATTT-TGGCAATTGTAATCTATCTTTACAGCAAAATAATGCGATCTTTAAATCGGTTCAGAACTACATTATTAAGTGCAATCGATTCTCTTAAGGTGGTCTCTTGTAGC-CCT---------TA--TTTAGTT-------------TTT--TA--AC-A-TG--------CATGGTC----T----------AATGTG---CCACTAGCTCATGTC-CGAGGTCTATGTTATTGCCCCCGTTATGGCTCGTCAAACTTCCCTTCGATATCAACAGAGTAAAA------------
gi|4 : CAAAATAATGCGATCTTCAAATCTGTTTATAACTACATTAGTAAGAGCAATCGATTCTCTTAAGGTGGTCTCGTGCAGT-CTTATATA--TAT---TTTTATTT-A-TAATTTTTGTTC--TA-TAT-A-TA--------CATGTAT----T----------TATGTGGAACCAATAGCTAATTACCCTCGGTCTATG-GATTGCCCCCCGTATGGCTCGTCAGACTTCCCTTTGACATCAGC--AGTAAAA------------GCCCGACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------NNNNNNNNNNNNT--CAATTTAGAATTAATA---------TAATAAATA-CATACGTTTGT-TCTC------CTAACTTTCTA--CAC--AA---TTTATTAAC-GTAAATTAGGTACTGAAACATTGAAACATTACCAATTACACTAAACGT---TTA-TCTGCCACCATTGTATCTGTTTAAGCATGGAGCGGATTTACATAAGCATGCTTTCAATCC-AATCCATTTTCTATCTGTGT----ATCAT-TCTTACA----GCTTAT---AAAATATTACATGTTAT---TGT------ATTGCAACATATAGATATTGAAATAAAATATGTTTGAA
gi|1 : TCGATTCTCTTAAGGTGGCCTCTTGTAGT-CTTATATA--TAT------TATTT-A-TG------GTTT--TA-TAT-A-TAATTATATACATGTAC----T----------AATGTGGAACCAATAGCTAAATTCTCGCGGTCTACG-GATTGCCCCCGGTACGGCTCGTCAGACTTCCCTTTGACATCAGC--AGTAAAA------------GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG--------------CAATTTAGAATTAATA---------TAATAAATA-TAAACTTTTGT-TCTA------CTAACATTCTA--CGT--AA---TTTATTAAC-GTAAATTAGGTACTGAA--------ACATTACCAAAAACATTAAACGT---TTA-TCTGTCATCATTGTATCTGTTTAAGCATGGAGCGGATTTACATAAGCATGCTTTCAATCC-AATCCATTTTCTATCTATGT----ATCAT-TCTTACA----GCTTAT---AAAATATTACATGTTAT---TGT------ATTGCAACATAAAGATAATGAAATAAAATATGTTTAAACT
gi|6 : ttgctactccaacttgagaagcacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAGGTGGTCTTTTGTAGT-CTTCTATT--TATT--TTTTATTG-A-TA------GTTA--TA-CAT-A-TA--------AATGTAC----T----------AATGTGGAACCAATAGCTAATTTCCCGCGGTCTATG-CATCGCCTCCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNN------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------NNA------------CAATTTAGAATCAATT---------TAATAAATA-CAAACTTTTGT-TCTA------CTAATTTTCGA--CAC--TA---TGTATTAAC-GTAAATAAGGTACTGAA--------ACATAACCAATAACATTTAACGT---TTA-TCTGCCAACTTTGTATCTGTTTAAGCATGGAGCGGATTTACATAAGCATTCTTTCAATCC-AATCCATTTTCTATCAGTGT----ATCAT-TCTTACA----GCTTAT---AAAATACTACATGTTAT---TGT------ATTGCAACATAAAGATATTGAAATAAAATATGTTTAAAttcttaatacgagttcatttatgaaaattggaagagattggtcaccaaacagcattatatcaacagatacgttatgatgttgttgaataccggtagcagctatcattttgtttctttgaacagtgtgcaatggacattgtaaaagataatatttcgtatcttcaatacttccgcatgcacatatgggactatctattttttttttcaatacaggtgtttcttgaggttgctg
gi|23 : --TATG--TCGTATCC-AGTG------GCTT--TACTATCG-TA---------ATGTACAGTGT----------AATGTACATCTACAAGCTCATTTCCCGCGGTCTATG-GATCGCCTGTGGCATGGCTCCTCAGGCTTCCCTTCGGAATCAAT--AGTGAAA------------
gi|31 : CAATAGCTAAATTCTCGCGGTCTACG-GATTGCTCCCGGTACGGCTCATCAGACTTCCCTTCGATATCAGC--AGTAAGA------------
gi|30 : CAATAGCTAAATTCTCGCGGTCTACG-GATTGCTCCCGGTACGGCTCATCAGACTTCCCTTCGATATCAGC--AGTAAGA------------
gi|21 : TATGGCTCGTCAGATTTCTCTTTGGCATCAAC--AGTAAAAACCCCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------N--------------CCATTCCAAGTTATTA---------TAGTAACTA-CAAACTTTACT-TTTATTCCTTCTAATTTTCTA--CAA--AA---TGTATTAAC-GTGAATTTGATACTGAA--------ACA
gi|22 : TAACTTCAAC--AGTAAAA------------GCCCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------N--------------NNNNNNNNNAT----AATTCCAAGTTAATAAA-A-TAA----------CTA------C-AA----CTA--CAC--AA---TTTGTTAAC-ATTGATAAGGTACTGAA--------ACATTACCAATTGCATTAAAC-TAAATTATTCTGTCA-GATTCTA-CCGTTT
gi|9 : --------------CAATTTAGAATTAATA---------TAATAAATA-TAAACTTTTGT-TCTA------CTAACTTTCTA--CAT--AA---TTTACAAAC-GTAAATTAGGTAATGAA--------ACATTACCAATAACATTAAAAGT---TTA-TCTGCCATCATTGTATCTGTTTAAGCATGGAGCGGATTTACATAAGCATGCTTTCAATCC-AATCCATTTTCTATCTGTGT----ATCAT-TCTTACA----GCTTAT---AAAATATTACATGTTAT---TGT------GTTGCAACATATAGATAATGAAACAAAATATGTTCAA
gi|2 : --------------CAATTTAAAGTTTATA---------TAATAAATACTA--CTTTTTT-TGTC------TTAATTTTCTA--CAC--AA---TATTTTCAC-GTTAATTAGGTACTGAG--------ACATTACCAATTACATTAAACGT---TTA-TCTGCCATCATTGTACTAGTTT---TTTA---CGGTTTTACATAAGCTAGCTTTCAATCC-AATCCATTTTCTGTCTGTGT----ATCAT-TCTTACA----GCTTAT---AAAATATTACATGTTAT---TGTCACATGATTGTAACATATAGATACTGAAATA
gi|17 : cttgctactccaactagagaaatacattttcaaatgaacttcgtaatataactacaatatctctcgacattttactttttggcaattgtaatctatctttacagcaaaaaaatgcgatcttcaaatctgttcataactacattattaagagcaatcgatgctcttaaagtggtctcttgttgtcctagatacttatagtttttgttttatatatatagtacatggaatgtgagtgtaaaatgtggaactactagctcatttcccacggtctatggatcgccccggtatgggtcgtcagacttccctttgacatcagcagtaaaagcccgacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAATA-CAACCTTTTTTCTCTC------CGAACTTTCTA--CTC--AG---TTTATTAAC-GTAAATTAGCTTCTGAA--------ACATTGCCAAATACATTAA-CGT---TTA-TCTGCCATCATTATATCTGTTTAAGCATGGAGCGGATTTACATAAGTATGCTTTCAATCC-AATCCAATTTCTATCTGTGT----ATCAT-TCTGACA----GCTTAT---ACAATATTACATGTTAT---TGT------
gi|11 : TA-CAACTTTTTTT-TCTT------CTAATAGTCTA--CAC--AAAATTTTAT-AAA-GTAAATTAGTTTTTGAA--------ACATTACCAGTTATTTTAAATGT---TTA-TCTGCCATCATTGTATCTGTTTA-GCATGGGGCAGATTTACATAAGCATGCACTCAATCC-AATCCATTTTCTGTCTGTGT----ATCAT-TCTTACA----GTTTAT---ACAACATTACATGGTAT---TGT------TTTGTTACGTATAGAGAGTGAAATAAAATATGTTTGAA
gi|15 : TTTATT-TCT--------TA-TTTTCTA--CAC--AC---TTTGTAAAT-GTAAATAAGGTACTGAT--------ACATTACCAATTACATTAAACGT---TTA-TCTGCCATCATTGTATCTGCTTAAGCATAGAGCGGATTTACATACACATGCTTTCAATCT-AATCCATTTTCTGTCTGTGT----ATCAT-TCCTACA----GTTTAT---AAAATATAACATGTTGT---TGT------ATTGTAAC--AGAGATGTTGAAATAAAATATGTT
gi|18 : T-TCTT------CTAATTTTCTATGCATGCAG---TGTGCCAAC-GTAAATAAGGAACTGAA--------ACAGAACTAATTACATTAAACGT---TTA-TCTACTATGATTGTGTCTGTTTAAGC---------------------ATGCTTATAATCA-AATCCATTTTCTGTCTGT-------------------------TTAT---GAAATAGTACACGTTAT---TGC------ATTATAACATATAGAT------ATAAAATATGTTGAAt
gi|24 : ttgtt------CTAATTTTGTA--CAC--AA---TTCA---------------GTACTGAA--------ACATCACC-------------GT---CAA-TCTGCCATCATTGAATGACTCAAAGCATGGAGCGGATTTACTTAAGCATGTTTTCAATCC-AATCAATTTTTTGTCTGTGT----ATC
gi|12 : ttAATTTGCTA--AGC--AA---CTTGTTAAAAGTATAACAGGTACTGAT--------AAATTACTAATGTCAGTATACGT---CAA-TCTGCCACCATTGTATCTGATGTAGCATGCACCTGATTCACATAAATATGCTTTCATTCCAAACCCATTGCATGTCTGTGT----ATTATATTTTACA----GTATAT---AGAATATTACATGTAAT---TGT------ATTATATCATATAGATTTTGAAATAAGAT
gi|20 : tttgaaattatgctctgtcaata-GTTAATTAGGTACTGAA--------ACATTATCAATTACATTAAACAT---TTA-TCAGCCATCATCGTG--------------GAGCAGATTTTTATAAGCATGCTTTCAATCC-AATTCATTTTTTGTCTGTGT----ATCTT-TCTTACA----GCTTAT---AACAAATAACATGTTAT---TGT------ATTGTAACATACAGATATTGAAATAAAATATGTTTGAAt
gi|10 : tTAGGTACTGAA--------ACATTACAAGTAACATTACATGT-----------CCATC------TCTGTTTAAGCATGGAGCGAATTTACATAAGCATGCTTTCAATCC-AGTCGATTTTCTGTCTGTGT----ATCAT-TCTTACA----GTTTAT---AAAATATTTCATGTTAT---TGT------ATTGTAACATATAGACATTGATATGATATATGTt
gi|25 : gtttcataaaaaatgaacttttacaatatttaagttctctacactaaaacgtttacaccgtctctttccttagttacatgT---TTA-TCTGCCATAATTGTATCTGTTT
gi|29 : cTGGATCGGATTAACATAAGCATGT----AATCT-AATCTATTTT----CTGTGT----ACC-----------------TGT---G---TATTAC----------TGT------ATTGTAACATAAAGATATTAAAACAAAATATGTTTAAAtacaaatgtatcgatgttattcttacactgagtttataaaatattacatgttattattgtattgtgtcatttagatattgaaatgaaatttgtttgaa
gi|26 : CGGATTTACATAAGCACGCTTTCAATCC-AATCTATTTTCTCTCTATGT----ATCAT-TCTTACA----GCTTAT---AAAATA-------TTAT---TGT------ATTGCAACATATAGATATTGAAATAAAATATGTTTAAAC
gi|16 : ATAAGCATGCTTTCAATCC-AATCCATTTTCTATCTGTGT----ATCAT-TCTTACA----GCTTAT---AAAATATTGCATGTTAT---TGT------ATTGCAAC--ATAGATATTGAA
gi|27 : ttactgcctatttcgttactgcggacatcaaatataaaatataaagatttaaacaattgtacgttatcagtttagttttcgttcattgagtagctaagtggtatataaattTAAACATGCTTTCAATCC-AATCCATTTTCTGTCTGTGT----ATCAT-TCTTACA----GTTTATATAAAAATATTACATATTAT---TGT------ATTGTAACACATAGCTATTAAAATAAAATATGTTTAAA
gi|25 : ATCTGTTTTACAAATGTATCGATGTTAT-TCTTACACTGAGTTTAT---AAAATATTACATGTTATTATTGT------ATTGTGTCATTTAGATATTGAAATGAAATTTGTTTGAA
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|28 ): TATAACTTATAGTGATTTTATGCATATACACGAAAGAAAAGCTTTGTAATGCCATGAAACGAAAAACGCCTATATGTTGTTAAATTACCATCAAAGTAACTATATTCATTTTGTT
Unaligned ( gi|33 ): TTACATTACTGTTAGTGATTGTCATAATTTAGACAAAAAGAAGGTGTCAGTTATGACTGATACGA
Unaligned ( gi|34 ): ACTAAATGTTTAATTAATTGAAACATAGATTCCCTAAATCAATTGCACTGTATCATGTT
Unaligned ( gi|35 ): GCCCGACAANNNNNNNNNNNNNNNNNNNNNNN
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 111 111111 11111111 111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 000 4 3 44 777 3 3 000000 55 3 3 3 3 33333333 666666666666666 1 0 3 0 0 33 5 8888888888888888888888888888888888888888888888888888888888888888888888888888888 4 77777 2 3 2 2 33 33 444 0 2 88888888 1 444 2 2 2 4444 333 333 666666
lowQualScore : ... . . .. ... . . ...... .. . . . . ........ ............... . . . . . .. . ............................................................................... . ..... . . . . .. .. ... . . ........ . ... . . . .... ... ... ......
lowQualScore : 000 4 6 66 999 6 6 555555 00 6 6 6 6 22222222 888888888888888 0 1 3 7 7 99 0 1111111111111111111111111111111111111111111111111111111111111111111111111111111 3 77777 1 1 9 0 77 77 777 3 5 55555555 9 444 5 2 2 7777 999 999 444444
consensus : TACTCCAACTTGAGAAGCACAAT---GGCGAATGAACTTCGTAATATAACTACAATATCTCTCGACATTTTACTTTT-TGGCAATTGTAATCTATCTTTACAGCAAAATAATGCGATCTTCAAATCTGTTCATAACTACATTATTAAGAGCAATCGATTCTCTTAAGGTGGCCTCTTGTAGT-CTTATATA--TAT---TTTTATTT-A-TA------GTTT--TA-T-AT-A-TA--------CATGTAC----T----------AATGTGGAACCAATAGCTAANTTCCCGCGGTCTACG-GATCGCCCCCGGTACGGCTCGTCAGACTTCCCTTCGACATCAGC--AGTAAAAGCCC-GA-----------CAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------G--------------C----------AATTTAGAATTAATATAATAAATACAAACTTT-----TGT-TC-TNCTAATTTTCTA--CA--CAA---TTTATTAAC-GTAAATTAGGTACTGAA--------ACATTACCAATNACATTAAACGT---TTA-TCTGCCATCATTGTATCTGTTTAAGCATGGAGCGGATTTACATAAGCATGCTTTCAATCC-AATCCATTTTCTGTCTGTGTATCAT-TCTTACA----GCTTAT---AAAATATTACATGTTAT---TGT------ATTGTAACATATAGATATTGAAATAAAATATGTTTAAACT
Reference ( family-1222 ) : TACTCCAACTTGAGAAGCACAAT---GGCGAATGAACTTCGTAATATAACTACAATATCTCTCGACATTTTACTTTT-TGGCAATTGTAATCTATCTTTACAGCAAAATAATGCGATCTTCAAATCTGTTCATAACTACATTATTAAGAGCAATCGATTCTCTTAAGGTGGCCTCTTGTAGT-CTTATATA--TATN--TTTTATTT-A-TA------GTTT--TA-T-AT-A-TA--------CATGTAC----T----------AATGTGGAACCAATAGCTAANTTCCCGCGGTCTACG-GATCGCCCCCGGTACGGCTCGTCAGACTTCCCTTCGACATCAGC--AGTAAAAGCCC-GA-----------CAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------G--------------C----------AATTTAGAATTAATATAATAAATACAAACTTT-----TNT-TC-TNCTAATTTTCTA--CA--CAA---TTTATTAAC-GTAAATTAGGTACTGAA--------ACATTACCAATNACATTAAACGT---TTA-TCTGCCATCATTGTATCTGTTTAAGCATGGAGCGGATTTACATAAGCATGCTTTCAATCC-AATCCATTTTCTGTCTGTGTATCAT-TCTTACA----GCTTAT---AAAATATTACATGTTAT---TGT------ATTGTAACATATAGATATTGAAATAAAATATGTTTAAACT
gi|1 : TACTCCAACTTGAGAAGCACAA
gi|1 : ttgcTCGATTCTCTTAAGGTGGCCTCTTGTAGT-CTTATATA--TAT------TATTT-A-TG------GTTT--TA-T-AT-A-TAATTATATACATGTAC----T----------AATGTGGAACCAATAGCTAAATTCTCGCGGTCTACG-GATTGCCCCCGGTACGGCTCGTCAGACTTCCCTTTGACATCAGC--AGTAAAAGNNN-NN-----------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG--------------C----------AATTTAGAATTAATATAATAAATATAAACTTT-----TGT-TC-TACTAACATTCTA--CG--TAA---TTTATTAAC-GTAAATTAGGTACTGAA--------ACATTACCAAAAACATTAAACGT---TTA-TCTGTCATCATTGTATCTGTTTAAGCATGGAGCGGATTTACATAAGCATGCTTTCAATCC-AATCCATTTTCTATCTATGTATCAT-TCTTACA----GCTTAT---AAAATATTACATGTTAT---TGT------ATTGCAACATAAAGATAATGAAATAAAATATGTTTAAACTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgattctcttaaggtggcctcttgtagtcttatatatattatttatggttttatatataattatatacatgtactaatgtggaaccaatagctaaattctcgcggtctacggattgcccccggtacggctcgtcagacttccctttgacatcagcagtaaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcaatttagaattaatataataaatataaacttttgttctactaacattctacgtaatttattaacgtaaattaggtactgaaacattaccaaaaacattaaacgtttatctgtcatcattgtatctgtttaagcatggagcggatttacataagcatgctttcaatccaatccattttctatctatgtatcattcttacagcttataaaatattacatgttattgtattgcaacataaagataatgaaataaaatatgtttaaactttcttaatacgagttcatttatgaaaattggaagagattggtcaccaaacagcattatatcaacagatacgttatgatgttgttgaataccggtagcagctatcattttgtttctttgaacagtgtgcaatggacattgtaaaagataatatttcgtatcttcaatacttccgcatgcacatatgggactatctattttttttttcaatacaggtgtttcttgaggttgctg
gi|10 : ttgctactccaacttgagaagcacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAGGTACTGAA--------ACATTACAAGTAACATTACATGT-----------CCATC------TCTGTTTAAGCATGGAGCGAATTTACATAAGCATGCTTTCAATCC-AGTCGATTTTCTGTCTGTGTATCAT-TCTTACA----GTTTAT---AAAATATTTCATGTTAT---TGT------ATTGTAACATATAGACATTGATATGATATATGTttcttaatacgagttcatttatgaaaattggaagagattggtcaccaaacagcattatatcaacagatacgttatgatgttgttgaataccggtagcagctatcattttgtttctttgaacagtgtgcaatggacattgtaaaagataatatttcgtatcttcaatacttccgcatgcacatatgggactatctattttttttttcaatacaggtgtttcttgaggttgctg
gi|11 : gtttcataaaaaatgaacttttacaatatttaagttctctacactaaaacgtttacaccgtctctttccttagttacatgTACAACTTTT-----TTT-TC-TTCTAATAGTCTA--CA--CAAAATTTTAT-AAA-GTAAATTAGTTTTTGAA--------ACATTACCAGTTATTTTAAATGT---TTA-TCTGCCATCATTGTATCTGTTTA-GCATGGGGCAGATTTACATAAGCATGCACTCAATCC-AATCCATTTTCTGTCTGTGTATCAT-TCTTACA----GTTTAT---ACAACATTACATGGTAT---TGT------TTTGTTACGTATAGAGAGTGAAATAAAATATGTTTGAA
gi|12 : AATTTGCTA--AG--CAA---CTTGTTAAAAGTATAACAGGTACTGAT--------AAATTACTAATGTCAGTATACGT---CAA-TCTGCCACCATTGTATCTGATGTAGCATGCACCTGATTCACATAAATATGCTTTCATTCCAAACCCATTGCATGTCTGTGTATTATATTTTACA----GTATAT---AGAATATTACATGTAAT---TGT------ATTATATCATATAGATTTTGAAATAAGAT
gi|13 : tttgaaattatgctctgtcaataTCTCGGCATTTTACATTT-TGGCAATTGTAATCTATCTTTACAGCAAAATAATGCGATCTTTAAATCGGTTCAGAACTACATTATTAAGTGCAATCGATTCTCTTAAGGTGGTCTCTTGTAGC-C----------------CTTATT----TA------GTTT--TT-TAAC-A-TG--------CATGGTC----T----------AATGTG---CCACTAGCTCATGT-CCGAGGTCTATGTTATTGCCCCCGTTATGGCTCGTCAAACTTCCCTTCGATATCAACAGAGTAAAAt
gi|14 : TACTCCAACTTGAGAAGCACAATTATGGCGAATGAACTTCGTAATATAACTACAATATCTCTCGGCATTTTACTTTT-TGGCAGTTGTAATCTATCTTTACAGCAAAATAATGCGATCTTCAAATCTATTCATAACTACATTATTAAGAGCAATCGATTCTCTTAAGGTGGCCTCTTGTAGT-CTTATATA--TAT---TTTTATTT-A-TA------GTTT--TA-T-AT-A-TA--------CATGTAC----T----------AATG
gi|15 : cttgcTT-----TAT-T---TCTTATTTTCTA--CA--CAC---TTTGTAAAT-GTAAATAAGGTACTGAT--------ACATTACCAATTACATTAAACGT---TTA-TCTGCCATCATTGTATCTGCTTAAGCATAGAGCGGATTTACATACACATGCTTTCAATCT-AATCCATTTTCTGTCTGTGTATCAT-TCCTACA----GTTTAT---AAAATATAACATGTTGT---TGT------ATTGTAAC--AGAGATGTTGAAATAAAATATGTTTgtg
gi|16 : ATAAGCATGCTTTCAATCC-AATCCATTTTCTATCTGTGTATCAT-TCTTACA----GCTTAT---AAAATATTGCATGTTAT---TGT------ATTGCAAC--ATAGATATTGAA
gi|17 : ttactgcctatttcgttactgcggacatcaaatataaaatataaagatttaaacaattgtacgttatcagtttagttttcgttcattgagtagctaagtggtatataaattAATACAACCTTT-----TTTCTC-TCCGAACTTTCTA--CT--CAG---TTTATTAAC-GTAAATTAGCTTCTGAA--------ACATTGCCAAATACATTAA-CGT---TTA-TCTGCCATCATTATATCTGTTTAAGCATGGAGCGGATTTACATAAGTATGCTTTCAATCC-AATCCAATTTCTATCTGTGTATCAT-TCTGACA----GCTTAT---ACAATATTACATGTTAT---TGT------
gi|18 : TTG-----TTT-TC-TTCTAATTTTCTATGCATGCAG---TGTGCCAAC-GTAAATAAGGAACTGAA--------ACAGAACTAATTACATTAAACGT---TTA-TCTACTATGATTGTGTCTGTT---------------------TAAGCATGCTTATAATCA-AATCCATTTTCTGTCTGT---------------------TTAT---GAAATAGTACACGTTAT---TGC------ATTATAACATATAGAT------ATAAAATATGTTGAA
gi|19 : TACT--AACTTAAAAAATACTAA---GACGAATGAACTTCGTAACATAACTTCAATATCTCTCGACAGTTAACTTTTTTGGCAATTGCAATCTATCTTTACAGCTAAATAATGCGATCTTCAAATCGGTTCAGAATTACATTATTAGGAGCAGTCGATTCTCTTATGATGGCCCCTTGTAGTCCTTATATA--TAT
gi|2 : tTACTCCAACTAGAGAAATACATT---TTCAAATGAACTTCGTAATATAACTACAATATCTCTCGACATTTTACTTTT-TGGCAATTGTAATCTATCTTTACAGCAAAAAAATGCGATCTTCAAATCTGTTCATAACTACATTATTAAGAGCAATCGATGCTCTTAAAGTGGTCTCTTGTTGT-CCTAGATACTTATAGTTTTTGTTTTA-TA------------TA-T-AT-AGTA--------CATGGAA----TGTGAGTGTAAAATGTGGAACTACTAGCTCATTTCCCACGGTCTATG-GATCGCCCC-GGTATGGGTCGTCAGACTTCCCTTTGACATCAGC--AGTAAAAGCCC-GA-----------CAAa
gi|2 : cttgc--------------C----------AATTTAAAGTTTATATAATAAATACTA-CTTT-----TTT-TG-TCTTAATTTTCTA--CA--CAA---TATTTTCAC-GTTAATTAGGTACTGAG--------ACATTACCAATTACATTAAACGT---TTA-TCTGCCATCATTGTACTAGTTT-----TTTA-CGGTTTTACATAAGCTAGCTTTCAATCC-AATCCATTTTCTGTCTGTGTATCAT-TCTTACA----GCTTAT---AAAATATTACATGTTAT---TGTCACATGATTGTAACATATAGATACTGAAATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatttaaagtttatataataaatactactttttttgtcttaattttctacacaatattttcacgttaattaggtactgagacattaccaattacattaaacgtttatctgccatcattgtactagttttttacggttttacataagctagctttcaatccaatccattttctgtctgtgtatcattcttacagcttataaaatattacatgttattgtcacatgattgtaacatatagatactgaaata
gi|20 : cttgctactccaactagagaaatacattttcaaatgaacttcgtaatataactacaatatctctcgacattttactttttggcaattgtaatctatctttacagcaaaaaaatgcgatcttcaaatctgttcataactacattattaagagcaatcgatgctcttaaagtggtctcttgttgtcctagatacttatagtttttgttttatatatatagtacatggaatgtgagtgtaaaatgtggaactactagctcatttcccacggtctatggatcgccccggtatgggtcgtcagacttccctttgacatcagcagtaaaagcccgacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-GTTAATTAGGTACTGAA--------ACATTATCAATTACATTAAACAT---TTA-TCAGCCATCATCGT--------------GGAGCAGATTTTTATAAGCATGCTTTCAATCC-AATTCATTTTTTGTCTGTGTATCTT-TCTTACA----GCTTAT---AACAAATAACATGTTAT---TGT------ATTGTAACATACAGATATTGAAATAAAATATGTTTGAA
gi|21 : tTATGGCTCGTCAGATTTCTCTTTGGCATCAAC--AGTAAAAACCCCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------N--------------C----------CATTCCAAGTTATTATAGTAACTACAAACTTTACTTTTAT-TCCTTCTAATTTTCTA--CA--AAA---TGTATTAAC-GTGAATTTGATACTGAA--------ACAt
gi|22 : ACTTCAAC--AGTAAAAGCCC-GA-----------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------N--------------NNNNNNNNNATAATTCCAAGTTAATAAAATAACTACAA---------------------------CTA--CA--CAA---TTTGTTAAC-ATTGATAAGGTACTGAA--------ACATTACCAATTGCATTAAAC-TAAATTATTCTGTCA-GATTCTA-CCGTTT
gi|23 : ta--TATG--TCGTATCC-AGTG------GCTT--TACT-ATCG-TA---------ATGTACAGTGT----------AATGTACATCTACAAGCTCATTTCCCGCGGTCTATG-GATCGCCTGTGGCATGGCTCCTCAGGCTTCCCTTCGGAATCAAT--AGTGAAA
gi|24 : -TTCTAATTTTGTA--CA--CAA---TTCA---------------GTACTGAA--------ACATCACC-------------GT---CAA-TCTGCCATCATTGAATGACTCAAAGCATGGAGCGGATTTACTTAAGCATGTTTTCAATCC-AATCAATTTTTTGTCTGTGTATC
gi|25 : T---TTA-TCTGCCATAATTGTATCTGTTT
gi|25 : cTGTTAT-TCTTACACTGAGTTTAT---AAAATATTACATGTTATTATTGT------ATTGTGTCATTTAGATATTGAAATGAAATTTGTTTGAAtacaaatgtatcgatgttattcttacactgagtttataaaatattacatgttattattgtattgtgtcatttagatattgaaatgaaatttgtttgaa
gi|26 : ctttatctgccataattgtatctgttttacaaatgtatcgaCGGATTTACATAAGCACGCTTTCAATCC-AATCTATTTTCTCTCTATGTATCAT-TCTTACA----GCTTAT---AAAATA-------TTAT---TGT------ATTGCAACATATAGATATTGAAATAAAATATGTTTAAAC
gi|27 : TAAACATGCTTTCAATCC-AATCCATTTTCTGTCTGTGTATCAT-TCTTACA----GTTTATATAAAAATATTACATATTAT---TGT------ATTGTAACACATAGCTATTAAAATAAAATATGTTTAAA
gi|29 : TGGATCGGATTAACATAAGCATGT----AATCT-AATCTATTTTCTGT----GTACC-----------------TGT---G---TATTAC----------TGT------ATTGTAACATAAAGATATTAAAACAAAATATGTTTAAA
gi|3 : TACTCCAACTTGAGAAGCACAAT---GGCGAATGAACTTCGTAATATAACTACACTATCTCTTGACATTTTACTTTT-TGGCAATTGTAATCTATCTTTACAGCAAAACAATGCGATCTTCAAATCTGTTCATATCTACAGTATTAAGAGCAATCGATTCTCTTAAGGTGGCCTCTTGTAGT-CTTATATA--TATA--TTTTATTT-A-TA------GTTT--TA-T-AT-A-TA--------CATGTAC----T----------AATGTGGAACCAATAGCTAAATTCTCACGGTCTACG-GATTGCCCCCAGTACGACTCGTCAGACTTCCCTTTGACATCAGC--AGTAAAAGNNN-NN-----------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------G--------------C----------AATTTAGAATTAATATAATAAATATAAACTTT-----AGT-TC-TACTAACTTTCTA--CA--TAA---TTTATTAAC-GTAAATTAGGTACTGAA--------ACATTACCAATAACATTAAACGT---TTA-TCTGCCATCATTGTATCTGTTTAAGCATAGAGCGGATTTACATAAGCATGCTTTCAATCC-AATCCATTTTATATCTGTGTATCAT-TCTTACA----GCTTAT---AAAATATTACATGTTAT---TGT------ATTGCAACATATAGATAATGAAATAAAATATGTTCAAACT
gi|30 : CAATAGCTAAATTCTCGCGGTCTACG-GATTGCTCCCGGTACGGCTCATCAGACTTCCCTTCGATATCAGC--AGTAAGA
gi|31 : CAATAGCTAAATTCTCGCGGTCTACG-GATTGCTCCCGGTACGGCTCATCAGACTTCCCTTCGATATCAGC--AGTAAGA
gi|32 : TCGTAGTATAACTTTAAATTCTCTAGATACTTTACATTC-TGGCAATAGTAATCTGTCATTGCAGCAAAATAAT
gi|4 : CAAAATAATGCGATCTTCAAATCTGTTTATAACTACATTAGTAAGAGCAATCGATTCTCTTAAGGTGGTCTCGTGCAGT-CTTATATA--TAT---TTTTATTT-A-TAATTTTTGTTC--TA-T-AT-A-TA--------CATGTAT----T----------TATGTGGAACCAATAGCTAATTACCCTCGGTCTATG-GATTGCCCCCCGTATGGCTCGTCAGACTTCCCTTTGACATCAGC--AGTAAAAGCCC-GA-----------CAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------NNNNNNNNNNNNT--C----------AATTTAGAATTAATATAATAAATACATACGTT-----TGT-TC-TCCTAACTTTCTA--CA--CAA---TTTATTAAC-GTAAATTAGGTACTGAAACATTGAAACATTACCAATTACACTAAACGT---TTA-TCTGCCACCATTGTATCTGTTTAAGCATGGAGCGGATTTACATAAGCATGCTTTCAATCC-AATCCATTTTCTATCTGTGTATCAT-TCTTACA----GCTTAT---AAAATATTACATGTTAT---TGT------ATTGCAACATATAGATATTGAAATAAAATATGTTTGAA
gi|5 : TACTCCAACTTGAGAAGCAAAAT---GACGAATGAACTTCGTAATATAACTACAATATCTCTCGACATTTTACTTTT-CGGCAATTGTAATCTATCTTTAGAGCAAAATAATGCGATCTTCAAATCTGTTCATAACTACATTATTAAGAGCAATCGATTGTCTTAAGGTGGTCTCTTGTAGT-CTTATATA--TATT--TTTTATTT-A-TA------GTTTTATA-T-AT-A-TA--------TATGTAC----T----------TATGTGGAACCAATACATTATTTCCCGCGGTCTATG-GATCGCCCCCCGTATGGCTCGTCAGACTTCCCTTTGACATCAGC--AGTAAAAGCCC-GA-----------CAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------NNNNNNNNNNNNNNTC----------AATTTAGAATTAATATAATAAATACAAACTTT-----TGT-TC-TACTA-----------A--CAA---TTTATTAAA-GTAAATTAGGTACTGAA--------ACATTACCAATAATAT
gi|6 : gcAAGGTGGTCTTTTGTAGT-CTTCTATT--TATT--TTTTATTG-A-TA------GTTA--TA-C-AT-A-TA--------AATGTAC----T----------AATGTGGAACCAATAGCTAATTTCCCGCGGTCTATG-CATCGCCTCCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNN-NN-----------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------NNA------------C----------AATTTAGAATCAATTTAATAAATACAAACTTT-----TGT-TC-TACTAATTTTCGA--CA--CTA---TGTATTAAC-GTAAATAAGGTACTGAA--------ACATAACCAATAACATTTAACGT---TTA-TCTGCCAACTTTGTATCTGTTTAAGCATGGAGCGGATTTACATAAGCATTCTTTCAATCC-AATCCATTTTCTATCAGTGTATCAT-TCTTACA----GCTTAT---AAAATACTACATGTTAT---TGT------ATTGCAACATAAAGATATTGAAATAAAATATGTTTAAA
gi|7 : TACTCCAACTTGAGAAGCACAAT---GGCGAATGAACTTCGTAATATAACTACACTATCTCTCGACATTTTACTTTT-TGGCAATTGTAATCTATCTTTACAGCAAAATAATGCGATCTTCAAATCTGTTCATAACTACATTATTAAGAGCAATCGATTCTCTTAAGGTGGCCTCTTGTAGT-CTTATATA--TTTT--TTTTATTT-A-TA------GTTT--TA-T-AT-A-TA--------CATGTAC----T----------AATATGGAACCAATAGCTAAATTTTTGCGGTCTGCG-GATTGCCCCTGGTACGGCTCGTCTGACTTCCCTTTGACATCAGC--AGTAAA
gi|8 : gcTGAGAAGCACAAT---GGCCAATGAACTTCGTAATATAACTACAATATCTCTCGACATTTTACTTTT-TGGCAATTGTAATCTATCTTTACAGCAAAATAATGCGATCTTCAAATCTGTTCATAACTACATTATTAAGAGCAATCGATTCTCTTAAGGTGGCCTCTTGTAGT-CTAATATA--TATT--TTTTATTT-A-TA------GTTT--TA-T-AT-A-TA--------CA--------------------AATGTGGAACCAATTACTAAATTCTCGCGGTCTAAG-GATTGCCCCCGGTACGGCTCGTCAGACTTCCCTTTGACATCAGC--AGTAAAA
gi|9 : --------------C----------AATTTAGAATTAATATAATAAATATAAACTTT-----TGT-TC-TACTAACTTTCTA--CA--TAA---TTTACAAAC-GTAAATTAGGTAATGAA--------ACATTACCAATAACATTAAAAGT---TTA-TCTGCCATCATTGTATCTGTTTAAGCATGGAGCGGATTTACATAAGCATGCTTTCAATCC-AATCCATTTTCTATCTGTGTATCAT-TCTTACA----GCTTAT---AAAATATTACATGTTAT---TGT------GTTGCAACATATAGATAATGAAACAAAATATGTTCAA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|28 ): TATAACTTATAGTGATTTTATGCATATACACGAAAGAAAAGCTTTGTAATGCCATGAAACGAAAAACGCCTATATGTTGTTAAATTACCATCAAAGTAACTATATTCATTTTGTT
Unaligned ( gi|33 ): TTACATTACTGTTAGTGATTGTCATAATTTAGACAAAAAGAAGGTGTCAGTTATGACTGATACGA
Unaligned ( gi|34 ): ACTAAATGTTTAATTAATTGAAACATAGATTCCCTAAATCAATTGCACTGTATCATGTT
Unaligned ( gi|35 ): GCCCGACAANNNNNNNNNNNNNNNNNNNNNNN
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 1 111111 11111111 111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 000 4 3 55 55 3 0 3 0 4 4 000000 55 3 3 3 3 33333333 666666666666666 1 0 3 0 0 33 5 8888888888888888888888888888888888888888888888888888888888888888888888888888888 4 99999 0 3 2 2 33 33 444 0 2 88888888 1 444 2 2 2 4444 333 333 666666
lowQualScore : ... . . .. .. . . . . . . ...... .. . . . . ........ ............... . . . . . .. . ............................................................................... . ..... . . . . .. .. ... . . ........ . ... . . . .... ... ... ......
lowQualScore : 000 4 6 00 00 6 9 6 8 0 0 555555 00 6 6 6 6 22222222 888888888888888 0 1 3 7 7 99 0 1111111111111111111111111111111111111111111111111111111111111111111111111111111 3 11111 5 3 9 0 77 77 777 3 5 55555555 9 444 5 2 2 7777 999 999 444444
consensus : TACTCCAACTTGAGAAGCACAAT---GGCGAATGAACTTCGTAATATAACTACAATATCTCTCGACATTTTACTTTT-TGGCAATTGTAATCTATCTTTACAGCAAAATAATGCGATCTTCAAATCTGTTCATAACTACATTATTAAGAGCAATCGATTCTCTTAAGGTGGCCTCTTGTAGT-CTTA--TA--TA-TA-T-TTTT-ATTT-ATA------GTTT--TA-T-AT-A-TA--------CATGTAC----T----------AATGTGGAACCAATAGCTAANTTCCCGCGGTCTACG-GATCGCCCCCGGTACGGCTCGTCAGACTTCCCTTCGACATCAGC--AGTAAAAGCCC-GA-----------CAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------G--------------C----------AATTTAGAATTAATATAATAAATACAAACTTT-----TGT-TC-TNCTAATTTTCTA--CA--CAA---TTTATTAAC-GTAAATTAGGTACTGAA--------ACATTACCAATNACATTAAACGT---TTA-TCTGCCATCATTGTATCTGTTTAAGCATGGAGCGGATTTACATAAGCATGCTTTCAATCC-AATCCATTTTCTGTCTGTGTATCAT-TCTTACA----GCTTAT---AAAATATTACATGTTAT---TGT------ATTGTAACATATAGATATTGAAATAAAATATGTTTAAACT
Reference ( family-1222 ) : TACTCCAACTTGAGAAGCACAAT---GGCGAATGAACTTCGTAATATAACTACAATATCTCTCGACATTTTACTTTT-TGGCAATTGTAATCTATCTTTACAGCAAAATAATGCGATCTTCAAATCTGTTCATAACTACATTATTAAGAGCAATCGATTCTCTTAAGGTGGCCTCTTGTAGT-CTTA--TA--TA-TA-T-TTTT-ATTT-ATA------GTTT--TA-T-AT-A-TA--------CATGTAC----T----------AATGTGGAACCAATAGCTAANTTCCCGCGGTCTACG-GATCGCCCCCGGTACGGCTCGTCAGACTTCCCTTCGACATCAGC--AGTAAAAGCCC-GA-----------CAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------G--------------C----------AATTTAGAATTAATATAATAAATACAAACTTT-----TGT-TC-TNCTAATTTTCTA--CA--CAA---TTTATTAAC-GTAAATTAGGTACTGAA--------ACATTACCAATNACATTAAACGT---TTA-TCTGCCATCATTGTATCTGTTTAAGCATGGAGCGGATTTACATAAGCATGCTTTCAATCC-AATCCATTTTCTGTCTGTGTATCAT-TCTTACA----GCTTAT---AAAATATTACATGTTAT---TGT------ATTGTAACATATAGATATTGAAATAAAATATGTTTAAACT
gi|1 : TACTCCAACTTGAGAAGCACAA
gi|1 : ttgcTCGATTCTCTTAAGGTGGCCTCTTGTAGT-CTTA--TA--TA-TA-T-T----ATTT-ATG------GTTT--TA-T-AT-A-TAATTATATACATGTAC----T----------AATGTGGAACCAATAGCTAAATTCTCGCGGTCTACG-GATTGCCCCCGGTACGGCTCGTCAGACTTCCCTTTGACATCAGC--AGTAAAAGNNN-NN-----------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG--------------C----------AATTTAGAATTAATATAATAAATATAAACTTT-----TGT-TC-TACTAACATTCTA--CG--TAA---TTTATTAAC-GTAAATTAGGTACTGAA--------ACATTACCAAAAACATTAAACGT---TTA-TCTGTCATCATTGTATCTGTTTAAGCATGGAGCGGATTTACATAAGCATGCTTTCAATCC-AATCCATTTTCTATCTATGTATCAT-TCTTACA----GCTTAT---AAAATATTACATGTTAT---TGT------ATTGCAACATAAAGATAATGAAATAAAATATGTTTAAACTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgattctcttaaggtggcctcttgtagtcttatatatattatttatggttttatatataattatatacatgtactaatgtggaaccaatagctaaattctcgcggtctacggattgcccccggtacggctcgtcagacttccctttgacatcagcagtaaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcaatttagaattaatataataaatataaacttttgttctactaacattctacgtaatttattaacgtaaattaggtactgaaacattaccaaaaacattaaacgtttatctgtcatcattgtatctgtttaagcatggagcggatttacataagcatgctttcaatccaatccattttctatctatgtatcattcttacagcttataaaatattacatgttattgtattgcaacataaagataatgaaataaaatatgtttaaactttcttaatacgagttcatttatgaaaattggaagagattggtcaccaaacagcattatatcaacagatacgttatgatgttgttgaataccggtagcagctatcattttgtttctttgaacagtgtgcaatggacattgtaaaagataatatttcgtatcttcaatacttccgcatgcacatatgggactatctattttttttttcaatacaggtgtttcttgaggttgctg
gi|10 : ttgctactccaacttgagaagcacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAGGTACTGAA--------ACATTACAAGTAACATTACATGT-----------CCATC------TCTGTTTAAGCATGGAGCGAATTTACATAAGCATGCTTTCAATCC-AGTCGATTTTCTGTCTGTGTATCAT-TCTTACA----GTTTAT---AAAATATTTCATGTTAT---TGT------ATTGTAACATATAGACATTGATATGATATATGTttcttaatacgagttcatttatgaaaattggaagagattggtcaccaaacagcattatatcaacagatacgttatgatgttgttgaataccggtagcagctatcattttgtttctttgaacagtgtgcaatggacattgtaaaagataatatttcgtatcttcaatacttccgcatgcacatatgggactatctattttttttttcaatacaggtgtttcttgaggttgctg
gi|11 : gtttcataaaaaatgaacttttacaatatttaagttctctacactaaaacgtttacaccgtctctttccttagttacatgTACAACTTTT-----TTT-TC-TTCTAATAGTCTA--CA--CAAAATTTTAT-AAA-GTAAATTAGTTTTTGAA--------ACATTACCAGTTATTTTAAATGT---TTA-TCTGCCATCATTGTATCTGTTTA-GCATGGGGCAGATTTACATAAGCATGCACTCAATCC-AATCCATTTTCTGTCTGTGTATCAT-TCTTACA----GTTTAT---ACAACATTACATGGTAT---TGT------TTTGTTACGTATAGAGAGTGAAATAAAATATGTTTGAA
gi|12 : AATTTGCTA--AG--CAA---CTTGTTAAAAGTATAACAGGTACTGAT--------AAATTACTAATGTCAGTATACGT---CAA-TCTGCCACCATTGTATCTGATGTAGCATGCACCTGATTCACATAAATATGCTTTCATTCCAAACCCATTGCATGTCTGTGTATTATATTTTACA----GTATAT---AGAATATTACATGTAAT---TGT------ATTATATCATATAGATTTTGAAATAAGAT
gi|13 : tttgaaattatgctctgtcaataTCTCGGCATTTTACATTT-TGGCAATTGTAATCTATCTTTACAGCAAAATAATGCGATCTTTAAATCGGTTCAGAACTACATTATTAAGTGCAATCGATTCTCTTAAGGTGGTCTCTTGTAGC-CCT----------TA-T-T----------TA------GTTT--TT-TAAC-A-TG--------CATGGTC----T----------AATGTG---CCACTAGCTCATGT-CCGAGGTCTATGTTATTGCCCCCGTTATGGCTCGTCAAACTTCCCTTCGATATCAACAGAGTAAAAt
gi|14 : TACTCCAACTTGAGAAGCACAATTATGGCGAATGAACTTCGTAATATAACTACAATATCTCTCGGCATTTTACTTTT-TGGCAGTTGTAATCTATCTTTACAGCAAAATAATGCGATCTTCAAATCTATTCATAACTACATTATTAAGAGCAATCGATTCTCTTAAGGTGGCCTCTTGTAGT-CTTA--TA--TA-TA-T-TTTT-ATTT-ATA------GTTT--TA-T-AT-A-TA--------CATGTAC----T----------AATG
gi|15 : cttgc-TTCTTATTTTCTA--CA--CAC---TTTGTAAAT-GTAAATAAGGTACTGAT--------ACATTACCAATTACATTAAACGT---TTA-TCTGCCATCATTGTATCTGCTTAAGCATAGAGCGGATTTACATACACATGCTTTCAATCT-AATCCATTTTCTGTCTGTGTATCAT-TCCTACA----GTTTAT---AAAATATAACATGTTGT---TGT------ATTGTAAC--AGAGATGTTGAAATAAAATATGTTTgtg
gi|16 : tttatATAAGCATGCTTTCAATCC-AATCCATTTTCTATCTGTGTATCAT-TCTTACA----GCTTAT---AAAATATTGCATGTTAT---TGT------ATTGCAAC--ATAGATATTGAA
gi|17 : ttactgcctatttcgttactgcggacatcaaatataaaatataaagatttaaacaattgtacgttatcagtttagttttcgttcattgagtagctaagtggtatataaattAATACAACCTTT-----TTTCTC-TCCGAACTTTCTA--CT--CAG---TTTATTAAC-GTAAATTAGCTTCTGAA--------ACATTGCCAAATACATTAA-CGT---TTA-TCTGCCATCATTATATCTGTTTAAGCATGGAGCGGATTTACATAAGTATGCTTTCAATCC-AATCCAATTTCTATCTGTGTATCAT-TCTGACA----GCTTAT---ACAATATTACATGTTAT---TGT------
gi|18 : T-TC-TTCTAATTTTCTATGCATGCAG---TGTGCCAAC-GTAAATAAGGAACTGAA--------ACAGAACTAATTACATTAAACGT---TTA-TCTACTATGATTGTGTCTGTT---------------------TAAGCATGCTTATAATCA-AATCCATTTTCTGTCTGT---------------------TTAT---GAAATAGTACACGTTAT---TGC------ATTATAACATATAGAT------ATAAAATATGTTGAA
gi|19 : ttgttTACT--AACTTAAAAAATACTAA---GACGAATGAACTTCGTAACATAACTTCAATATCTCTCGACAGTTAACTTTTTTGGCAATTGCAATCTATCTTTACAGCTAAATAATGCGATCTTCAAATCGGTTCAGAATTACATTATTAGGAGCAGTCGATTCTCTTATGATGGCCCCTTGTAGTCCTTA--TA--TA-TA-T-
gi|2 : tTACTCCAACTAGAGAAATACATT---TTCAAATGAACTTCGTAATATAACTACAATATCTCTCGACATTTTACTTTT-TGGCAATTGTAATCTATCTTTACAGCAAAAAAATGCGATCTTCAAATCTGTTCATAACTACATTATTAAGAGCAATCGATGCTCTTAAAGTGGTCTCTTGTTGT-CCTAGATACTTA-TAGT-TTTT-GTTTTATA------------TA-T-AT-AGTA--------CATGGAA----TGTGAGTGTAAAATGTGGAACTACTAGCTCATTTCCCACGGTCTATG-GATCGCCCC-GGTATGGGTCGTCAGACTTCCCTTTGACATCAGC--AGTAAAAGCCC-GA-----------CAAa
gi|2 : cttgc--------------C----------AATTTAAAGTTTATATAATAAATACTA-CTTT-----TTT-TG-TCTTAATTTTCTA--CA--CAA---TATTTTCAC-GTTAATTAGGTACTGAG--------ACATTACCAATTACATTAAACGT---TTA-TCTGCCATCATTGTACTAGTTT-----TTTA-CGGTTTTACATAAGCTAGCTTTCAATCC-AATCCATTTTCTGTCTGTGTATCAT-TCTTACA----GCTTAT---AAAATATTACATGTTAT---TGTCACATGATTGTAACATATAGATACTGAAATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatttaaagtttatataataaatactactttttttgtcttaattttctacacaatattttcacgttaattaggtactgagacattaccaattacattaaacgtttatctgccatcattgtactagttttttacggttttacataagctagctttcaatccaatccattttctgtctgtgtatcattcttacagcttataaaatattacatgttattgtcacatgattgtaacatatagatactgaaata
gi|20 : cttgctactccaactagagaaatacattttcaaatgaacttcgtaatataactacaatatctctcgacattttactttttggcaattgtaatctatctttacagcaaaaaaatgcgatcttcaaatctgttcataactacattattaagagcaatcgatgctcttaaagtggtctcttgttgtcctagatacttatagtttttgttttatatatatagtacatggaatgtgagtgtaaaatgtggaactactagctcatttcccacggtctatggatcgccccggtatgggtcgtcagacttccctttgacatcagcagtaaaagcccgacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-GTTAATTAGGTACTGAA--------ACATTATCAATTACATTAAACAT---TTA-TCAGCCATCATCGT--------------GGAGCAGATTTTTATAAGCATGCTTTCAATCC-AATTCATTTTTTGTCTGTGTATCTT-TCTTACA----GCTTAT---AACAAATAACATGTTAT---TGT------ATTGTAACATACAGATATTGAAATAAAATATGTTTGAA
gi|21 : tTATGGCTCGTCAGATTTCTCTTTGGCATCAAC--AGTAAAAACCCCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------N--------------C----------CATTCCAAGTTATTATAGTAACTACAAACTTTACTTTTAT-TCCTTCTAATTTTCTA--CA--AAA---TGTATTAAC-GTGAATTTGATACTGAA--------ACAt
gi|22 : ACTTCAAC--AGTAAAAGCCC-GA-----------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------N--------------NNNNNNNNNATAATTCCAAGTTAATAAAATAACTACAA---------------------------CTA--CA--CAA---TTTGTTAAC-ATTGATAAGGTACTGAA--------ACATTACCAATTGCATTAAAC-TAAATTATTCTGTCA-GATTCTA-CCGTTT
gi|23 : taTG------GCTT--TACT-ATCG-TA---------ATGTACAGTGT----------AATGTACATCTACAAGCTCATTTCCCGCGGTCTATG-GATCGCCTGTGGCATGGCTCCTCAGGCTTCCCTTCGGAATCAAT--AGTGAAA
gi|24 : tatgtcgtatccag-TTCTAATTTTGTA--CA--CAA---TTCA---------------GTACTGAA--------ACATCACC-------------GT---CAA-TCTGCCATCATTGAATGACTCAAAGCATGGAGCGGATTTACTTAAGCATGTTTTCAATCC-AATCAATTTTTTGTCTGTGTATC
gi|25 : T---TTA-TCTGCCATAATTGTATCTGTTT
gi|25 : cTGTTAT-TCTTACACTGAGTTTAT---AAAATATTACATGTTATTATTGT------ATTGTGTCATTTAGATATTGAAATGAAATTTGTTTGAAtacaaatgtatcgatgttattcttacactgagtttataaaatattacatgttattattgtattgtgtcatttagatattgaaatgaaatttgtttgaa
gi|26 : ctttatctgccataattgtatctgttttacaaatgtatcgaCGGATTTACATAAGCACGCTTTCAATCC-AATCTATTTTCTCTCTATGTATCAT-TCTTACA----GCTTAT---AAAATA-------TTAT---TGT------ATTGCAACATATAGATATTGAAATAAAATATGTTTAAAC
gi|27 : TAAACATGCTTTCAATCC-AATCCATTTTCTGTCTGTGTATCAT-TCTTACA----GTTTATATAAAAATATTACATATTAT---TGT------ATTGTAACACATAGCTATTAAAATAAAATATGTTTAAA
gi|29 : TGGATCGGATTAACATAAGCATGT----AATCT-AATCTATTTTCTGT----GTACC-----------------TGT---G---TATTAC----------TGT------ATTGTAACATAAAGATATTAAAACAAAATATGTTTAAA
gi|3 : TACTCCAACTTGAGAAGCACAAT---GGCGAATGAACTTCGTAATATAACTACACTATCTCTTGACATTTTACTTTT-TGGCAATTGTAATCTATCTTTACAGCAAAACAATGCGATCTTCAAATCTGTTCATATCTACAGTATTAAGAGCAATCGATTCTCTTAAGGTGGCCTCTTGTAGT-CTTA--TA--TA-TA-TATTTT-ATTT-ATA------GTTT--TA-T-AT-A-TA--------CATGTAC----T----------AATGTGGAACCAATAGCTAAATTCTCACGGTCTACG-GATTGCCCCCAGTACGACTCGTCAGACTTCCCTTTGACATCAGC--AGTAAAAGNNN-NN-----------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------G--------------C----------AATTTAGAATTAATATAATAAATATAAACTTT-----AGT-TC-TACTAACTTTCTA--CA--TAA---TTTATTAAC-GTAAATTAGGTACTGAA--------ACATTACCAATAACATTAAACGT---TTA-TCTGCCATCATTGTATCTGTTTAAGCATAGAGCGGATTTACATAAGCATGCTTTCAATCC-AATCCATTTTATATCTGTGTATCAT-TCTTACA----GCTTAT---AAAATATTACATGTTAT---TGT------ATTGCAACATATAGATAATGAAATAAAATATGTTCAAACT
gi|30 : CAATAGCTAAATTCTCGCGGTCTACG-GATTGCTCCCGGTACGGCTCATCAGACTTCCCTTCGATATCAGC--AGTAAGA
gi|31 : CAATAGCTAAATTCTCGCGGTCTACG-GATTGCTCCCGGTACGGCTCATCAGACTTCCCTTCGATATCAGC--AGTAAGA
gi|32 : TCGTAGTATAACTTTAAATTCTCTAGATACTTTACATTC-TGGCAATAGTAATCTGTCATTGCAGCAAAATAAT
gi|4 : CAAAATAATGCGATCTTCAAATCTGTTTATAACTACATTAGTAAGAGCAATCGATTCTCTTAAGGTGGTCTCGTGCAGT-CTTA--TA--TA-TA-T-TTTT-ATTT-ATAATTTTTGTTC--TA-T-AT-A-TA--------CATGTAT----T----------TATGTGGAACCAATAGCTAATTACCCTCGGTCTATG-GATTGCCCCCCGTATGGCTCGTCAGACTTCCCTTTGACATCAGC--AGTAAAAGCCC-GA-----------CAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------NNNNNNNNNNNNT--C----------AATTTAGAATTAATATAATAAATACATACGTT-----TGT-TC-TCCTAACTTTCTA--CA--CAA---TTTATTAAC-GTAAATTAGGTACTGAAACATTGAAACATTACCAATTACACTAAACGT---TTA-TCTGCCACCATTGTATCTGTTTAAGCATGGAGCGGATTTACATAAGCATGCTTTCAATCC-AATCCATTTTCTATCTGTGTATCAT-TCTTACA----GCTTAT---AAAATATTACATGTTAT---TGT------ATTGCAACATATAGATATTGAAATAAAATATGTTTGAA
gi|5 : TACTCCAACTTGAGAAGCAAAAT---GACGAATGAACTTCGTAATATAACTACAATATCTCTCGACATTTTACTTTT-CGGCAATTGTAATCTATCTTTAGAGCAAAATAATGCGATCTTCAAATCTGTTCATAACTACATTATTAAGAGCAATCGATTGTCTTAAGGTGGTCTCTTGTAGT-CTTA--TA--TA-TATT-TTTT-ATTT-ATA------GTTTTATA-T-AT-A-TA--------TATGTAC----T----------TATGTGGAACCAATACATTATTTCCCGCGGTCTATG-GATCGCCCCCCGTATGGCTCGTCAGACTTCCCTTTGACATCAGC--AGTAAAAGCCC-GA-----------CAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------NNNNNNNNNNNNNNTC----------AATTTAGAATTAATATAATAAATACAAACTTT-----TGT-TC-TACTA-----------A--CAA---TTTATTAAA-GTAAATTAGGTACTGAA--------ACATTACCAATAATAT
gi|6 : gcAAGGTGGTCTTTTGTAGT-CTTC--TA--TT-TA-T-TTTTTATTG-ATA------GTTA--TA-C-AT-A-TA--------AATGTAC----T----------AATGTGGAACCAATAGCTAATTTCCCGCGGTCTATG-CATCGCCTCCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNN-NN-----------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------NNA------------C----------AATTTAGAATCAATTTAATAAATACAAACTTT-----TGT-TC-TACTAATTTTCGA--CA--CTA---TGTATTAAC-GTAAATAAGGTACTGAA--------ACATAACCAATAACATTTAACGT---TTA-TCTGCCAACTTTGTATCTGTTTAAGCATGGAGCGGATTTACATAAGCATTCTTTCAATCC-AATCCATTTTCTATCAGTGTATCAT-TCTTACA----GCTTAT---AAAATACTACATGTTAT---TGT------ATTGCAACATAAAGATATTGAAATAAAATATGTTTAAA
gi|7 : TACTCCAACTTGAGAAGCACAAT---GGCGAATGAACTTCGTAATATAACTACACTATCTCTCGACATTTTACTTTT-TGGCAATTGTAATCTATCTTTACAGCAAAATAATGCGATCTTCAAATCTGTTCATAACTACATTATTAAGAGCAATCGATTCTCTTAAGGTGGCCTCTTGTAGT-CTTA--TA--TATTT-T-TTTT-ATTT-ATA------GTTT--TA-T-AT-A-TA--------CATGTAC----T----------AATATGGAACCAATAGCTAAATTTTTGCGGTCTGCG-GATTGCCCCTGGTACGGCTCGTCTGACTTCCCTTTGACATCAGC--AGTAAA
gi|8 : gcTGAGAAGCACAAT---GGCCAATGAACTTCGTAATATAACTACAATATCTCTCGACATTTTACTTTT-TGGCAATTGTAATCTATCTTTACAGCAAAATAATGCGATCTTCAAATCTGTTCATAACTACATTATTAAGAGCAATCGATTCTCTTAAGGTGGCCTCTTGTAGT-CTAA--TA--TA-TATT-TTTT-ATTT-ATA------GTTT--TA-T-AT-A-TA--------CA--------------------AATGTGGAACCAATTACTAAATTCTCGCGGTCTAAG-GATTGCCCCCGGTACGGCTCGTCAGACTTCCCTTTGACATCAGC--AGTAAAA
gi|9 : --------------C----------AATTTAGAATTAATATAATAAATATAAACTTT-----TGT-TC-TACTAACTTTCTA--CA--TAA---TTTACAAAC-GTAAATTAGGTAATGAA--------ACATTACCAATAACATTAAAAGT---TTA-TCTGCCATCATTGTATCTGTTTAAGCATGGAGCGGATTTACATAAGCATGCTTTCAATCC-AATCCATTTTCTATCTGTGTATCAT-TCTTACA----GCTTAT---AAAATATTACATGTTAT---TGT------GTTGCAACATATAGATAATGAAACAAAATATGTTCAA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|28 ): TATAACTTATAGTGATTTTATGCATATACACGAAAGAAAAGCTTTGTAATGCCATGAAACGAAAAACGCCTATATGTTGTTAAATTACCATCAAAGTAACTATATTCATTTTGTT
Unaligned ( gi|33 ): TTACATTACTGTTAGTGATTGTCATAATTTAGACAAAAAGAAGGTGTCAGTTATGACTGATACGA
Unaligned ( gi|34 ): ACTAAATGTTTAATTAATTGAAACATAGATTCCCTAAATCAATTGCACTGTATCATGTT
Unaligned ( gi|35 ): GCCCGACAANNNNNNNNNNNNNNNNNNNNNNN
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 1 111111 11111111 111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 000 4 3 55 55 3 0 3 0 4 4 000000 55 3 3 3 3 33333333 666666666666666 1 0 3 0 0 33 5 8888888888888888888888888888888888888888888888888888888888888888888888888888888 4 99999 0 3 2 2 33 33 444 0 2 88888888 1 444 2 2 2 4444 333 333 666666
lowQualScore : ... . . .. .. . . . . . . ...... .. . . . . ........ ............... . . . . . .. . ............................................................................... . ..... . . . . .. .. ... . . ........ . ... . . . .... ... ... ......
lowQualScore : 000 4 6 00 00 6 9 6 8 0 0 555555 00 6 6 6 6 22222222 888888888888888 0 1 3 7 7 99 0 1111111111111111111111111111111111111111111111111111111111111111111111111111111 3 11111 5 3 9 0 77 77 777 3 5 55555555 9 444 5 2 2 7777 999 999 444444
consensus : TACTCCAACTTGAGAAGCACAAT---GGCGAATGAACTTCGTAATATAACTACAATATCTCTCGACATTTTACTTTT-TGGCAATTGTAATCTATCTTTACAGCAAAATAATGCGATCTTCAAATCTGTTCATAACTACATTATTAAGAGCAATCGATTCTCTTAAGGTGGCCTCTTGTAGT-CTTA--TA--TA-TA-T-TTTT-ATTT-ATA------GTTT--TA-T-AT-A-TA--------CATGTAC----T----------AATGTGGAACCAATAGCTAANTTCCCGCGGTCTACG-GATCGCCCCCGGTACGGCTCGTCAGACTTCCCTTCGACATCAGC--AGTAAAAGCCC-GA-----------CAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------G--------------C----------AATTTAGAATTAATATAATAAATACAAACTTT-----TGT-TC-TNCTAATTTTCTA--CA--CAA---TTTATTAAC-GTAAATTAGGTACTGAA--------ACATTACCAATNACATTAAACGT---TTA-TCTGCCATCATTGTATCTGTTTAAGCATGGAGCGGATTTACATAAGCATGCTTTCAATCC-AATCCATTTTCTGTCTGTGTATCAT-TCTTACA----GCTTAT---AAAATATTACATGTTAT---TGT------ATTGTAACATATAGATATTGAAATAAAATATGTTTAAACT
Reference ( family-1222 ) : TACTCCAACTTGAGAAGCACAAT---GGCGAATGAACTTCGTAATATAACTACAATATCTCTCGACATTTTACTTTT-TGGCAATTGTAATCTATCTTTACAGCAAAATAATGCGATCTTCAAATCTGTTCATAACTACATTATTAAGAGCAATCGATTCTCTTAAGGTGGCCTCTTGTAGT-CTTA--TA--TA-TA-T-TTTT-ATTT-ATA------GTTT--TA-T-AT-A-TA--------CATGTAC----T----------AATGTGGAACCAATAGCTAANTTCCCGCGGTCTACG-GATCGCCCCCGGTACGGCTCGTCAGACTTCCCTTCGACATCAGC--AGTAAAAGCCC-GA-----------CAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------G--------------C----------AATTTAGAATTAATATAATAAATACAAACTTT-----TGT-TC-TNCTAATTTTCTA--CA--CAA---TTTATTAAC-GTAAATTAGGTACTGAA--------ACATTACCAATNACATTAAACGT---TTA-TCTGCCATCATTGTATCTGTTTAAGCATGGAGCGGATTTACATAAGCATGCTTTCAATCC-AATCCATTTTCTGTCTGTGTATCAT-TCTTACA----GCTTAT---AAAATATTACATGTTAT---TGT------ATTGTAACATATAGATATTGAAATAAAATATGTTTAAACT
gi|1 : TACTCCAACTTGAGAAGCACAA
gi|1 : ttgcTCGATTCTCTTAAGGTGGCCTCTTGTAGT-CTTA--TA--TA-TA-T-T----ATTT-ATG------GTTT--TA-T-AT-A-TAATTATATACATGTAC----T----------AATGTGGAACCAATAGCTAAATTCTCGCGGTCTACG-GATTGCCCCCGGTACGGCTCGTCAGACTTCCCTTTGACATCAGC--AGTAAAAGNNN-NN-----------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG--------------C----------AATTTAGAATTAATATAATAAATATAAACTTT-----TGT-TC-TACTAACATTCTA--CG--TAA---TTTATTAAC-GTAAATTAGGTACTGAA--------ACATTACCAAAAACATTAAACGT---TTA-TCTGTCATCATTGTATCTGTTTAAGCATGGAGCGGATTTACATAAGCATGCTTTCAATCC-AATCCATTTTCTATCTATGTATCAT-TCTTACA----GCTTAT---AAAATATTACATGTTAT---TGT------ATTGCAACATAAAGATAATGAAATAAAATATGTTTAAACTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgattctcttaaggtggcctcttgtagtcttatatatattatttatggttttatatataattatatacatgtactaatgtggaaccaatagctaaattctcgcggtctacggattgcccccggtacggctcgtcagacttccctttgacatcagcagtaaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcaatttagaattaatataataaatataaacttttgttctactaacattctacgtaatttattaacgtaaattaggtactgaaacattaccaaaaacattaaacgtttatctgtcatcattgtatctgtttaagcatggagcggatttacataagcatgctttcaatccaatccattttctatctatgtatcattcttacagcttataaaatattacatgttattgtattgcaacataaagataatgaaataaaatatgtttaaactttcttaatacgagttcatttatgaaaattggaagagattggtcaccaaacagcattatatcaacagatacgttatgatgttgttgaataccggtagcagctatcattttgtttctttgaacagtgtgcaatggacattgtaaaagataatatttcgtatcttcaatacttccgcatgcacatatgggactatctattttttttttcaatacaggtgtttcttgaggttgctg
gi|10 : ttgctactccaacttgagaagcacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAGGTACTGAA--------ACATTACAAGTAACATTACATGT-----------CCATC------TCTGTTTAAGCATGGAGCGAATTTACATAAGCATGCTTTCAATCC-AGTCGATTTTCTGTCTGTGTATCAT-TCTTACA----GTTTAT---AAAATATTTCATGTTAT---TGT------ATTGTAACATATAGACATTGATATGATATATGTttcttaatacgagttcatttatgaaaattggaagagattggtcaccaaacagcattatatcaacagatacgttatgatgttgttgaataccggtagcagctatcattttgtttctttgaacagtgtgcaatggacattgtaaaagataatatttcgtatcttcaatacttccgcatgcacatatgggactatctattttttttttcaatacaggtgtttcttgaggttgctg
gi|11 : gtttcataaaaaatgaacttttacaatatttaagttctctacactaaaacgtttacaccgtctctttccttagttacatgTACAACTTTT-----TTT-TC-TTCTAATAGTCTA--CA--CAAAATTTTAT-AAA-GTAAATTAGTTTTTGAA--------ACATTACCAGTTATTTTAAATGT---TTA-TCTGCCATCATTGTATCTGTTTA-GCATGGGGCAGATTTACATAAGCATGCACTCAATCC-AATCCATTTTCTGTCTGTGTATCAT-TCTTACA----GTTTAT---ACAACATTACATGGTAT---TGT------TTTGTTACGTATAGAGAGTGAAATAAAATATGTTTGAA
gi|12 : AATTTGCTA--AG--CAA---CTTGTTAAAAGTATAACAGGTACTGAT--------AAATTACTAATGTCAGTATACGT---CAA-TCTGCCACCATTGTATCTGATGTAGCATGCACCTGATTCACATAAATATGCTTTCATTCCAAACCCATTGCATGTCTGTGTATTATATTTTACA----GTATAT---AGAATATTACATGTAAT---TGT------ATTATATCATATAGATTTTGAAATAAGAT
gi|13 : tttgaaattatgctctgtcaataTCTCGGCATTTTACATTT-TGGCAATTGTAATCTATCTTTACAGCAAAATAATGCGATCTTTAAATCGGTTCAGAACTACATTATTAAGTGCAATCGATTCTCTTAAGGTGGTCTCTTGTAGC-CCT----------TA-T-T----------TA------GTTT--TT-TAAC-A-TG--------CATGGTC----T----------AATGTG---CCACTAGCTCATGT-CCGAGGTCTATGTTATTGCCCCCGTTATGGCTCGTCAAACTTCCCTTCGATATCAACAGAGTAAAAt
gi|14 : TACTCCAACTTGAGAAGCACAATTATGGCGAATGAACTTCGTAATATAACTACAATATCTCTCGGCATTTTACTTTT-TGGCAGTTGTAATCTATCTTTACAGCAAAATAATGCGATCTTCAAATCTATTCATAACTACATTATTAAGAGCAATCGATTCTCTTAAGGTGGCCTCTTGTAGT-CTTA--TA--TA-TA-T-TTTT-ATTT-ATA------GTTT--TA-T-AT-A-TA--------CATGTAC----T----------AATG
gi|15 : cttgc-TTCTTATTTTCTA--CA--CAC---TTTGTAAAT-GTAAATAAGGTACTGAT--------ACATTACCAATTACATTAAACGT---TTA-TCTGCCATCATTGTATCTGCTTAAGCATAGAGCGGATTTACATACACATGCTTTCAATCT-AATCCATTTTCTGTCTGTGTATCAT-TCCTACA----GTTTAT---AAAATATAACATGTTGT---TGT------ATTGTAAC--AGAGATGTTGAAATAAAATATGTTTgtg
gi|16 : tttatATAAGCATGCTTTCAATCC-AATCCATTTTCTATCTGTGTATCAT-TCTTACA----GCTTAT---AAAATATTGCATGTTAT---TGT------ATTGCAAC--ATAGATATTGAA
gi|17 : ttactgcctatttcgttactgcggacatcaaatataaaatataaagatttaaacaattgtacgttatcagtttagttttcgttcattgagtagctaagtggtatataaattAATACAACCTTT-----TTTCTC-TCCGAACTTTCTA--CT--CAG---TTTATTAAC-GTAAATTAGCTTCTGAA--------ACATTGCCAAATACATTAA-CGT---TTA-TCTGCCATCATTATATCTGTTTAAGCATGGAGCGGATTTACATAAGTATGCTTTCAATCC-AATCCAATTTCTATCTGTGTATCAT-TCTGACA----GCTTAT---ACAATATTACATGTTAT---TGT------
gi|18 : T-TC-TTCTAATTTTCTATGCATGCAG---TGTGCCAAC-GTAAATAAGGAACTGAA--------ACAGAACTAATTACATTAAACGT---TTA-TCTACTATGATTGTGTCTGTT---------------------TAAGCATGCTTATAATCA-AATCCATTTTCTGTCTGT---------------------TTAT---GAAATAGTACACGTTAT---TGC------ATTATAACATATAGAT------ATAAAATATGTTGAA
gi|19 : ttgttTACT--AACTTAAAAAATACTAA---GACGAATGAACTTCGTAACATAACTTCAATATCTCTCGACAGTTAACTTTTTTGGCAATTGCAATCTATCTTTACAGCTAAATAATGCGATCTTCAAATCGGTTCAGAATTACATTATTAGGAGCAGTCGATTCTCTTATGATGGCCCCTTGTAGTCCTTA--TA--TA-TA-T-
gi|2 : tTACTCCAACTAGAGAAATACATT---TTCAAATGAACTTCGTAATATAACTACAATATCTCTCGACATTTTACTTTT-TGGCAATTGTAATCTATCTTTACAGCAAAAAAATGCGATCTTCAAATCTGTTCATAACTACATTATTAAGAGCAATCGATGCTCTTAAAGTGGTCTCTTGTTGT-CCTAGATACTTA-TAGT-TTTT-GTTTTATA------------TA-T-AT-AGTA--------CATGGAA----TGTGAGTGTAAAATGTGGAACTACTAGCTCATTTCCCACGGTCTATG-GATCGCCCC-GGTATGGGTCGTCAGACTTCCCTTTGACATCAGC--AGTAAAAGCCC-GA-----------CAAa
gi|2 : cttgc--------------C----------AATTTAAAGTTTATATAATAAATACTA-CTTT-----TTT-TG-TCTTAATTTTCTA--CA--CAA---TATTTTCAC-GTTAATTAGGTACTGAG--------ACATTACCAATTACATTAAACGT---TTA-TCTGCCATCATTGTACTAGTTT-----TTTA-CGGTTTTACATAAGCTAGCTTTCAATCC-AATCCATTTTCTGTCTGTGTATCAT-TCTTACA----GCTTAT---AAAATATTACATGTTAT---TGTCACATGATTGTAACATATAGATACTGAAATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatttaaagtttatataataaatactactttttttgtcttaattttctacacaatattttcacgttaattaggtactgagacattaccaattacattaaacgtttatctgccatcattgtactagttttttacggttttacataagctagctttcaatccaatccattttctgtctgtgtatcattcttacagcttataaaatattacatgttattgtcacatgattgtaacatatagatactgaaata
gi|20 : cttgctactccaactagagaaatacattttcaaatgaacttcgtaatataactacaatatctctcgacattttactttttggcaattgtaatctatctttacagcaaaaaaatgcgatcttcaaatctgttcataactacattattaagagcaatcgatgctcttaaagtggtctcttgttgtcctagatacttatagtttttgttttatatatatagtacatggaatgtgagtgtaaaatgtggaactactagctcatttcccacggtctatggatcgccccggtatgggtcgtcagacttccctttgacatcagcagtaaaagcccgacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-GTTAATTAGGTACTGAA--------ACATTATCAATTACATTAAACAT---TTA-TCAGCCATCATCGT--------------GGAGCAGATTTTTATAAGCATGCTTTCAATCC-AATTCATTTTTTGTCTGTGTATCTT-TCTTACA----GCTTAT---AACAAATAACATGTTAT---TGT------ATTGTAACATACAGATATTGAAATAAAATATGTTTGAA
gi|21 : tTATGGCTCGTCAGATTTCTCTTTGGCATCAAC--AGTAAAAACCCCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------N--------------C----------CATTCCAAGTTATTATAGTAACTACAAACTTTACTTTTAT-TCCTTCTAATTTTCTA--CA--AAA---TGTATTAAC-GTGAATTTGATACTGAA--------ACAt
gi|22 : ACTTCAAC--AGTAAAAGCCC-GA-----------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------N--------------NNNNNNNNNATAATTCCAAGTTAATAAAATAACTACAA---------------------------CTA--CA--CAA---TTTGTTAAC-ATTGATAAGGTACTGAA--------ACATTACCAATTGCATTAAAC-TAAATTATTCTGTCA-GATTCTA-CCGTTT
gi|23 : taTG------GCTT--TACT-ATCG-TA---------ATGTACAGTGT----------AATGTACATCTACAAGCTCATTTCCCGCGGTCTATG-GATCGCCTGTGGCATGGCTCCTCAGGCTTCCCTTCGGAATCAAT--AGTGAAA
gi|24 : tatgtcgtatccag-TTCTAATTTTGTA--CA--CAA---TTCA---------------GTACTGAA--------ACATCACC-------------GT---CAA-TCTGCCATCATTGAATGACTCAAAGCATGGAGCGGATTTACTTAAGCATGTTTTCAATCC-AATCAATTTTTTGTCTGTGTATC
gi|25 : T---TTA-TCTGCCATAATTGTATCTGTTT
gi|25 : cTGTTAT-TCTTACACTGAGTTTAT---AAAATATTACATGTTATTATTGT------ATTGTGTCATTTAGATATTGAAATGAAATTTGTTTGAAtacaaatgtatcgatgttattcttacactgagtttataaaatattacatgttattattgtattgtgtcatttagatattgaaatgaaatttgtttgaa
gi|26 : ctttatctgccataattgtatctgttttacaaatgtatcgaCGGATTTACATAAGCACGCTTTCAATCC-AATCTATTTTCTCTCTATGTATCAT-TCTTACA----GCTTAT---AAAATA-------TTAT---TGT------ATTGCAACATATAGATATTGAAATAAAATATGTTTAAAC
gi|27 : TAAACATGCTTTCAATCC-AATCCATTTTCTGTCTGTGTATCAT-TCTTACA----GTTTATATAAAAATATTACATATTAT---TGT------ATTGTAACACATAGCTATTAAAATAAAATATGTTTAAA
gi|29 : TGGATCGGATTAACATAAGCATGT----AATCT-AATCTATTTTCTGT----GTACC-----------------TGT---G---TATTAC----------TGT------ATTGTAACATAAAGATATTAAAACAAAATATGTTTAAA
gi|3 : TACTCCAACTTGAGAAGCACAAT---GGCGAATGAACTTCGTAATATAACTACACTATCTCTTGACATTTTACTTTT-TGGCAATTGTAATCTATCTTTACAGCAAAACAATGCGATCTTCAAATCTGTTCATATCTACAGTATTAAGAGCAATCGATTCTCTTAAGGTGGCCTCTTGTAGT-CTTA--TA--TA-TA-TATTTT-ATTT-ATA------GTTT--TA-T-AT-A-TA--------CATGTAC----T----------AATGTGGAACCAATAGCTAAATTCTCACGGTCTACG-GATTGCCCCCAGTACGACTCGTCAGACTTCCCTTTGACATCAGC--AGTAAAAGNNN-NN-----------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------G--------------C----------AATTTAGAATTAATATAATAAATATAAACTTT-----AGT-TC-TACTAACTTTCTA--CA--TAA---TTTATTAAC-GTAAATTAGGTACTGAA--------ACATTACCAATAACATTAAACGT---TTA-TCTGCCATCATTGTATCTGTTTAAGCATAGAGCGGATTTACATAAGCATGCTTTCAATCC-AATCCATTTTATATCTGTGTATCAT-TCTTACA----GCTTAT---AAAATATTACATGTTAT---TGT------ATTGCAACATATAGATAATGAAATAAAATATGTTCAAACT
gi|30 : CAATAGCTAAATTCTCGCGGTCTACG-GATTGCTCCCGGTACGGCTCATCAGACTTCCCTTCGATATCAGC--AGTAAGA
gi|31 : CAATAGCTAAATTCTCGCGGTCTACG-GATTGCTCCCGGTACGGCTCATCAGACTTCCCTTCGATATCAGC--AGTAAGA
gi|32 : TCGTAGTATAACTTTAAATTCTCTAGATACTTTACATTC-TGGCAATAGTAATCTGTCATTGCAGCAAAATAAT
gi|4 : CAAAATAATGCGATCTTCAAATCTGTTTATAACTACATTAGTAAGAGCAATCGATTCTCTTAAGGTGGTCTCGTGCAGT-CTTA--TA--TA-TA-T-TTTT-ATTT-ATAATTTTTGTTC--TA-T-AT-A-TA--------CATGTAT----T----------TATGTGGAACCAATAGCTAATTACCCTCGGTCTATG-GATTGCCCCCCGTATGGCTCGTCAGACTTCCCTTTGACATCAGC--AGTAAAAGCCC-GA-----------CAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------NNNNNNNNNNNNT--C----------AATTTAGAATTAATATAATAAATACATACGTT-----TGT-TC-TCCTAACTTTCTA--CA--CAA---TTTATTAAC-GTAAATTAGGTACTGAAACATTGAAACATTACCAATTACACTAAACGT---TTA-TCTGCCACCATTGTATCTGTTTAAGCATGGAGCGGATTTACATAAGCATGCTTTCAATCC-AATCCATTTTCTATCTGTGTATCAT-TCTTACA----GCTTAT---AAAATATTACATGTTAT---TGT------ATTGCAACATATAGATATTGAAATAAAATATGTTTGAA
gi|5 : TACTCCAACTTGAGAAGCAAAAT---GACGAATGAACTTCGTAATATAACTACAATATCTCTCGACATTTTACTTTT-CGGCAATTGTAATCTATCTTTAGAGCAAAATAATGCGATCTTCAAATCTGTTCATAACTACATTATTAAGAGCAATCGATTGTCTTAAGGTGGTCTCTTGTAGT-CTTA--TA--TA-TATT-TTTT-ATTT-ATA------GTTTTATA-T-AT-A-TA--------TATGTAC----T----------TATGTGGAACCAATACATTATTTCCCGCGGTCTATG-GATCGCCCCCCGTATGGCTCGTCAGACTTCCCTTTGACATCAGC--AGTAAAAGCCC-GA-----------CAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------NNNNNNNNNNNNNNTC----------AATTTAGAATTAATATAATAAATACAAACTTT-----TGT-TC-TACTA-----------A--CAA---TTTATTAAA-GTAAATTAGGTACTGAA--------ACATTACCAATAATAT
gi|6 : gcAAGGTGGTCTTTTGTAGT-CTTC--TA--TT-TA-T-TTTTTATTG-ATA------GTTA--TA-C-AT-A-TA--------AATGTAC----T----------AATGTGGAACCAATAGCTAATTTCCCGCGGTCTATG-CATCGCCTCCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNN-NN-----------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------NNA------------C----------AATTTAGAATCAATTTAATAAATACAAACTTT-----TGT-TC-TACTAATTTTCGA--CA--CTA---TGTATTAAC-GTAAATAAGGTACTGAA--------ACATAACCAATAACATTTAACGT---TTA-TCTGCCAACTTTGTATCTGTTTAAGCATGGAGCGGATTTACATAAGCATTCTTTCAATCC-AATCCATTTTCTATCAGTGTATCAT-TCTTACA----GCTTAT---AAAATACTACATGTTAT---TGT------ATTGCAACATAAAGATATTGAAATAAAATATGTTTAAA
gi|7 : TACTCCAACTTGAGAAGCACAAT---GGCGAATGAACTTCGTAATATAACTACACTATCTCTCGACATTTTACTTTT-TGGCAATTGTAATCTATCTTTACAGCAAAATAATGCGATCTTCAAATCTGTTCATAACTACATTATTAAGAGCAATCGATTCTCTTAAGGTGGCCTCTTGTAGT-CTTA--TA--TATTT-T-TTTT-ATTT-ATA------GTTT--TA-T-AT-A-TA--------CATGTAC----T----------AATATGGAACCAATAGCTAAATTTTTGCGGTCTGCG-GATTGCCCCTGGTACGGCTCGTCTGACTTCCCTTTGACATCAGC--AGTAAA
gi|8 : gcTGAGAAGCACAAT---GGCCAATGAACTTCGTAATATAACTACAATATCTCTCGACATTTTACTTTT-TGGCAATTGTAATCTATCTTTACAGCAAAATAATGCGATCTTCAAATCTGTTCATAACTACATTATTAAGAGCAATCGATTCTCTTAAGGTGGCCTCTTGTAGT-CTAA--TA--TA-TATT-TTTT-ATTT-ATA------GTTT--TA-T-AT-A-TA--------CA--------------------AATGTGGAACCAATTACTAAATTCTCGCGGTCTAAG-GATTGCCCCCGGTACGGCTCGTCAGACTTCCCTTTGACATCAGC--AGTAAAA
gi|9 : --------------C----------AATTTAGAATTAATATAATAAATATAAACTTT-----TGT-TC-TACTAACTTTCTA--CA--TAA---TTTACAAAC-GTAAATTAGGTAATGAA--------ACATTACCAATAACATTAAAAGT---TTA-TCTGCCATCATTGTATCTGTTTAAGCATGGAGCGGATTTACATAAGCATGCTTTCAATCC-AATCCATTTTCTATCTGTGTATCAT-TCTTACA----GCTTAT---AAAATATTACATGTTAT---TGT------GTTGCAACATATAGATAATGAAACAAAATATGTTCAA
blockSeqs : . T C GA CT T G A T T ATTTTT TA C A C G . TGTGAGTGTAA T T AG C CAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTC C ACTTT C C T TG TG AAT A ACATTGAA A AAA T A A CTGA ATA TAT CACATG
blockSeqs : . . . . . . T . . . . . . . . . . AGTGT T . . . CAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTC C . . . T . . . . . T . . . . . . . .
blockSeqs : . . . . . . T . . . . . . . . . . T T . . . ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC A . . . C . . . . . G . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . T A . . . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAT A . . . T . . . . . T . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . T A . . . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAC A . . . C . . . . . T . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . T A . . . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGC A . . . T . . . . . T . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . T T . . . A . . . T . . . . . T . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . T T . . A . . . A . . . . . T . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . T T . . . . . . C . . . . . T . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . A . . . . . . A . . . . . A . . . . . . . .
blockSeqs : A . . . . A . . . . . T . . . . . . . .
blockSeqs : . . A . . . . . A . . . . . . . .
blockSeqs : . . . . . . . . A . . . . . . . .
blockSeqs : . . . . . A . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . .
blockSeqCons : *** ********
originalCons : TACTCCAACTTGAGAAGCACAAT---GGCGAATGAACTTCGTAATATAACTACAATATCTCTCGACATTTTACTTTT-TGGCAATTGTAATCTATCTTTACAGCAAAATAATGCGATCTTCAAATCTGTTCATAACTACATTATTAAGAGCAATCGATTCTCTTAAGGTGGCCTCTTGTAGT-CTTA--TA--TA-TA-T-TTTT-ATTT-ATA------GTTT--TA-T-AT-A-TA--------CATGTAC----T----------AATGTGGAACCAATAGCTAANTTCCCGCGGTCTACG-GATCGCCCCCGGTACGGCTCGTCAGACTTCCCTTCGACATCAGC--AGTAAAAGCCC-GA-----------CAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------G--------------C----------AATTTAGAATTAATATAATAAATACAAACTTT-----TGT-TC-TNCTAATTTTCTA--CA--CAA---TTTATTAAC-GTAAATTAGGTACTGAA--------ACATTACCAATNACATTAAACGT---TTA-TCTGCCATCATTGTATCTGTTTAAGCATGGAGCGGATTTACATAAGCATGCTTTCAATCC-AATCCATTTTCTGTCTGTGTATCAT-TCTTACA----GCTTAT---AAAATATTACATGTTAT---TGT------ATTGTAACATATAGATATTGAAATAAAATATGTTTAAACT
finalCons : TACTCCAACTTGAGAAGCACAAT---GGCGAATGAACTTCGTAATATAACTACAATATCTCTCGACATTTTACTTTT-TGGCAATTGTAATCTATCTTTACAGCAAAATAATGCGATCTTCAAATCTGTTCATAACTACATTATTAAGAGCAATCGATTCTCTTAAGGTGGCCTCTTGTAGT-CTTA--TA--TA-TA-T-TTTT-ATTT-ATA------GTTT--TA-T-AT-A-TA--------CATGTAC----T----------AATGTGGAACCAATAGCTAANTTCCCGCGGTCTACG-GATCGCCCCCGGTACGGCTCGTCAGACTTCCCTTCGACATCAGC--AGTAAAAGCCC-GA-----------CAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------G--------------C----------AATTTAGAATTAATATAATAAATACAAACTTT-----TGT-TC-TNCTAATTTTCTA--CA--CAA---TTTATTAAC-GTAAATTAGGTACTGAA--------ACATTACCAATNACATTAAACGT---TTA-TCTGCCATCATTGTATCTGTTTAAGCATGGAGCGGATTTACATAAGCATGCTTTCAATCC-AATCCATTTTCTGTCTGTGTATCAT-TCTTACA----GCTTAT---AAAATATTACATGTTAT---TGT------ATTGTAACATATAGATATTGAAATAAAATATGTTTAAACT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|28 ): TATAACTTATAGTGATTTTATGCATATACACGAAAGAAAAGCTTTGTAATGCCATGAAACGAAAAACGCCTATATGTTGTTAAATTACCATCAAAGTAACTATATTCATTTTGTT
Unaligned ( gi|33 ): TTACATTACTGTTAGTGATTGTCATAATTTAGACAAAAAGAAGGTGTCAGTTATGACTGATACGA
Unaligned ( gi|34 ): ACTAAATGTTTAATTAATTGAAACATAGATTCCCTAAATCAATTGCACTGTATCATGTT
Unaligned ( gi|35 ): GCCCGACAANNNNNNNNNNNNNNNNNNNNNNN
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 1 111111 11111111 111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 000 4 3 55 55 3 0 3 0 4 4 000000 55 3 3 3 3 33333333 666666666666666 1 0 3 0 0 33 5 8888888888888888888888888888888888888888888888888888888888888888888888888888888 4 99999 0 3 2 2 33 33 444 0 2 88888888 1 444 2 2 2 4444 333 333 666666
lowQualScore : ... . . .. .. . . . . . . ...... .. . . . . ........ ............... . . . . . .. . ............................................................................... . ..... . . . . .. .. ... . . ........ . ... . . . .... ... ... ......
lowQualScore : 000 4 6 00 00 6 9 6 8 0 0 555555 00 6 6 6 6 22222222 888888888888888 0 1 3 7 7 99 0 1111111111111111111111111111111111111111111111111111111111111111111111111111111 3 11111 5 3 9 0 77 77 777 3 5 55555555 9 444 5 2 2 7777 999 999 444444
consensus : TACTCCAACTTGAGAAGCACAAT---GGCGAATGAACTTCGTAATATAACTACAATATCTCTCGACATTTTACTTTT-TGGCAATTGTAATCTATCTTTACAGCAAAATAATGCGATCTTCAAATCTGTTCATAACTACATTATTAAGAGCAATCGATTCTCTTAAGGTGGCCTCTTGTAGT-CTTA--TA--TA-TA-T-TTTT-ATTT-ATA------GTTT--TA-T-AT-A-TA--------CATGTAC----T----------AATGTGGAACCAATAGCTAANTTCCCGCGGTCTACG-GATCGCCCCCGGTACGGCTCGTCAGACTTCCCTTCGACATCAGC--AGTAAAAGCCC-GA-----------CAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------G--------------C----------AATTTAGAATTAATATAATAAATACAAACTTT-----TGT-TC-TNCTAATTTTCTA--CA--CAA---TTTATTAAC-GTAAATTAGGTACTGAA--------ACATTACCAATNACATTAAACGT---TTA-TCTGCCATCATTGTATCTGTTTAAGCATGGAGCGGATTTACATAAGCATGCTTTCAATCC-AATCCATTTTCTGTCTGTGTATCAT-TCTTACA----GCTTAT---AAAATATTACATGTTAT---TGT------ATTGTAACATATAGATATTGAAATAAAATATGTTTAAACT
Reference ( family-1222 ) : TACTCCAACTTGAGAAGCACAAT---GGCGAATGAACTTCGTAATATAACTACAATATCTCTCGACATTTTACTTTT-TGGCAATTGTAATCTATCTTTACAGCAAAATAATGCGATCTTCAAATCTGTTCATAACTACATTATTAAGAGCAATCGATTCTCTTAAGGTGGCCTCTTGTAGT-CTTA--TA--TA-TA-T-TTTT-ATTT-ATA------GTTT--TA-T-AT-A-TA--------CATGTAC----T----------AATGTGGAACCAATAGCTAANTTCCCGCGGTCTACG-GATCGCCCCCGGTACGGCTCGTCAGACTTCCCTTCGACATCAGC--AGTAAAAGCCC-GA-----------CAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------G--------------C----------AATTTAGAATTAATATAATAAATACAAACTTT-----TGT-TC-TNCTAATTTTCTA--CA--CAA---TTTATTAAC-GTAAATTAGGTACTGAA--------ACATTACCAATNACATTAAACGT---TTA-TCTGCCATCATTGTATCTGTTTAAGCATGGAGCGGATTTACATAAGCATGCTTTCAATCC-AATCCATTTTCTGTCTGTGTATCAT-TCTTACA----GCTTAT---AAAATATTACATGTTAT---TGT------ATTGTAACATATAGATATTGAAATAAAATATGTTTAAACT
gi|1 : TACTCCAACTTGAGAAGCACAA
gi|1 : ttgcTCGATTCTCTTAAGGTGGCCTCTTGTAGT-CTTA--TA--TA-TA-T-T----ATTT-ATG------GTTT--TA-T-AT-A-TAATTATATACATGTAC----T----------AATGTGGAACCAATAGCTAAATTCTCGCGGTCTACG-GATTGCCCCCGGTACGGCTCGTCAGACTTCCCTTTGACATCAGC--AGTAAAAGNNN-NN-----------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG--------------C----------AATTTAGAATTAATATAATAAATATAAACTTT-----TGT-TC-TACTAACATTCTA--CG--TAA---TTTATTAAC-GTAAATTAGGTACTGAA--------ACATTACCAAAAACATTAAACGT---TTA-TCTGTCATCATTGTATCTGTTTAAGCATGGAGCGGATTTACATAAGCATGCTTTCAATCC-AATCCATTTTCTATCTATGTATCAT-TCTTACA----GCTTAT---AAAATATTACATGTTAT---TGT------ATTGCAACATAAAGATAATGAAATAAAATATGTTTAAACTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgattctcttaaggtggcctcttgtagtcttatatatattatttatggttttatatataattatatacatgtactaatgtggaaccaatagctaaattctcgcggtctacggattgcccccggtacggctcgtcagacttccctttgacatcagcagtaaaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcaatttagaattaatataataaatataaacttttgttctactaacattctacgtaatttattaacgtaaattaggtactgaaacattaccaaaaacattaaacgtttatctgtcatcattgtatctgtttaagcatggagcggatttacataagcatgctttcaatccaatccattttctatctatgtatcattcttacagcttataaaatattacatgttattgtattgcaacataaagataatgaaataaaatatgtttaaactttcttaatacgagttcatttatgaaaattggaagagattggtcaccaaacagcattatatcaacagatacgttatgatgttgttgaataccggtagcagctatcattttgtttctttgaacagtgtgcaatggacattgtaaaagataatatttcgtatcttcaatacttccgcatgcacatatgggactatctattttttttttcaatacaggtgtttcttgaggttgctg
gi|10 : ttgctactccaacttgagaagcacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAGGTACTGAA--------ACATTACAAGTAACATTACATGT-----------CCATC------TCTGTTTAAGCATGGAGCGAATTTACATAAGCATGCTTTCAATCC-AGTCGATTTTCTGTCTGTGTATCAT-TCTTACA----GTTTAT---AAAATATTTCATGTTAT---TGT------ATTGTAACATATAGACATTGATATGATATATGTttcttaatacgagttcatttatgaaaattggaagagattggtcaccaaacagcattatatcaacagatacgttatgatgttgttgaataccggtagcagctatcattttgtttctttgaacagtgtgcaatggacattgtaaaagataatatttcgtatcttcaatacttccgcatgcacatatgggactatctattttttttttcaatacaggtgtttcttgaggttgctg
gi|11 : gtttcataaaaaatgaacttttacaatatttaagttctctacactaaaacgtttacaccgtctctttccttagttacatgTACAACTTTT-----TTT-TC-TTCTAATAGTCTA--CA--CAAAATTTTAT-AAA-GTAAATTAGTTTTTGAA--------ACATTACCAGTTATTTTAAATGT---TTA-TCTGCCATCATTGTATCTGTTTA-GCATGGGGCAGATTTACATAAGCATGCACTCAATCC-AATCCATTTTCTGTCTGTGTATCAT-TCTTACA----GTTTAT---ACAACATTACATGGTAT---TGT------TTTGTTACGTATAGAGAGTGAAATAAAATATGTTTGAA
gi|12 : AATTTGCTA--AG--CAA---CTTGTTAAAAGTATAACAGGTACTGAT--------AAATTACTAATGTCAGTATACGT---CAA-TCTGCCACCATTGTATCTGATGTAGCATGCACCTGATTCACATAAATATGCTTTCATTCCAAACCCATTGCATGTCTGTGTATTATATTTTACA----GTATAT---AGAATATTACATGTAAT---TGT------ATTATATCATATAGATTTTGAAATAAGAT
gi|13 : tttgaaattatgctctgtcaataTCTCGGCATTTTACATTT-TGGCAATTGTAATCTATCTTTACAGCAAAATAATGCGATCTTTAAATCGGTTCAGAACTACATTATTAAGTGCAATCGATTCTCTTAAGGTGGTCTCTTGTAGC-CCT----------TA-T-T----------TA------GTTT--TT-TAAC-A-TG--------CATGGTC----T----------AATGTG---CCACTAGCTCATGT-CCGAGGTCTATGTTATTGCCCCCGTTATGGCTCGTCAAACTTCCCTTCGATATCAACAGAGTAAAAt
gi|14 : TACTCCAACTTGAGAAGCACAATTATGGCGAATGAACTTCGTAATATAACTACAATATCTCTCGGCATTTTACTTTT-TGGCAGTTGTAATCTATCTTTACAGCAAAATAATGCGATCTTCAAATCTATTCATAACTACATTATTAAGAGCAATCGATTCTCTTAAGGTGGCCTCTTGTAGT-CTTA--TA--TA-TA-T-TTTT-ATTT-ATA------GTTT--TA-T-AT-A-TA--------CATGTAC----T----------AATG
gi|15 : cttgc-TTCTTATTTTCTA--CA--CAC---TTTGTAAAT-GTAAATAAGGTACTGAT--------ACATTACCAATTACATTAAACGT---TTA-TCTGCCATCATTGTATCTGCTTAAGCATAGAGCGGATTTACATACACATGCTTTCAATCT-AATCCATTTTCTGTCTGTGTATCAT-TCCTACA----GTTTAT---AAAATATAACATGTTGT---TGT------ATTGTAAC--AGAGATGTTGAAATAAAATATGTTTgtg
gi|16 : tttatATAAGCATGCTTTCAATCC-AATCCATTTTCTATCTGTGTATCAT-TCTTACA----GCTTAT---AAAATATTGCATGTTAT---TGT------ATTGCAAC--ATAGATATTGAA
gi|17 : ttactgcctatttcgttactgcggacatcaaatataaaatataaagatttaaacaattgtacgttatcagtttagttttcgttcattgagtagctaagtggtatataaattAATACAACCTTT-----TTTCTC-TCCGAACTTTCTA--CT--CAG---TTTATTAAC-GTAAATTAGCTTCTGAA--------ACATTGCCAAATACATTAA-CGT---TTA-TCTGCCATCATTATATCTGTTTAAGCATGGAGCGGATTTACATAAGTATGCTTTCAATCC-AATCCAATTTCTATCTGTGTATCAT-TCTGACA----GCTTAT---ACAATATTACATGTTAT---TGT------
gi|18 : T-TC-TTCTAATTTTCTATGCATGCAG---TGTGCCAAC-GTAAATAAGGAACTGAA--------ACAGAACTAATTACATTAAACGT---TTA-TCTACTATGATTGTGTCTGTT---------------------TAAGCATGCTTATAATCA-AATCCATTTTCTGTCTGT---------------------TTAT---GAAATAGTACACGTTAT---TGC------ATTATAACATATAGAT------ATAAAATATGTTGAA
gi|19 : ttgttTACT--AACTTAAAAAATACTAA---GACGAATGAACTTCGTAACATAACTTCAATATCTCTCGACAGTTAACTTTTTTGGCAATTGCAATCTATCTTTACAGCTAAATAATGCGATCTTCAAATCGGTTCAGAATTACATTATTAGGAGCAGTCGATTCTCTTATGATGGCCCCTTGTAGTCCTTA--TA--TA-TA-T-
gi|2 : tTACTCCAACTAGAGAAATACATT---TTCAAATGAACTTCGTAATATAACTACAATATCTCTCGACATTTTACTTTT-TGGCAATTGTAATCTATCTTTACAGCAAAAAAATGCGATCTTCAAATCTGTTCATAACTACATTATTAAGAGCAATCGATGCTCTTAAAGTGGTCTCTTGTTGT-CCTAGATACTTA-TAGT-TTTT-GTTTTATA------------TA-T-AT-AGTA--------CATGGAA----TGTGAGTGTAAAATGTGGAACTACTAGCTCATTTCCCACGGTCTATG-GATCGCCCC-GGTATGGGTCGTCAGACTTCCCTTTGACATCAGC--AGTAAAAGCCC-GA-----------CAAa
gi|2 : cttgc--------------C----------AATTTAAAGTTTATATAATAAATACTA-CTTT-----TTT-TG-TCTTAATTTTCTA--CA--CAA---TATTTTCAC-GTTAATTAGGTACTGAG--------ACATTACCAATTACATTAAACGT---TTA-TCTGCCATCATTGTACTAGTTT-----TTTA-CGGTTTTACATAAGCTAGCTTTCAATCC-AATCCATTTTCTGTCTGTGTATCAT-TCTTACA----GCTTAT---AAAATATTACATGTTAT---TGTCACATGATTGTAACATATAGATACTGAAATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatttaaagtttatataataaatactactttttttgtcttaattttctacacaatattttcacgttaattaggtactgagacattaccaattacattaaacgtttatctgccatcattgtactagttttttacggttttacataagctagctttcaatccaatccattttctgtctgtgtatcattcttacagcttataaaatattacatgttattgtcacatgattgtaacatatagatactgaaata
gi|20 : cttgctactccaactagagaaatacattttcaaatgaacttcgtaatataactacaatatctctcgacattttactttttggcaattgtaatctatctttacagcaaaaaaatgcgatcttcaaatctgttcataactacattattaagagcaatcgatgctcttaaagtggtctcttgttgtcctagatacttatagtttttgttttatatatatagtacatggaatgtgagtgtaaaatgtggaactactagctcatttcccacggtctatggatcgccccggtatgggtcgtcagacttccctttgacatcagcagtaaaagcccgacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-GTTAATTAGGTACTGAA--------ACATTATCAATTACATTAAACAT---TTA-TCAGCCATCATCGT--------------GGAGCAGATTTTTATAAGCATGCTTTCAATCC-AATTCATTTTTTGTCTGTGTATCTT-TCTTACA----GCTTAT---AACAAATAACATGTTAT---TGT------ATTGTAACATACAGATATTGAAATAAAATATGTTTGAA
gi|21 : tTATGGCTCGTCAGATTTCTCTTTGGCATCAAC--AGTAAAAACCCCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------N--------------C----------CATTCCAAGTTATTATAGTAACTACAAACTTTACTTTTAT-TCCTTCTAATTTTCTA--CA--AAA---TGTATTAAC-GTGAATTTGATACTGAA--------ACAt
gi|22 : ACTTCAAC--AGTAAAAGCCC-GA-----------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------N--------------NNNNNNNNNATAATTCCAAGTTAATAAAATAACTACAA---------------------------CTA--CA--CAA---TTTGTTAAC-ATTGATAAGGTACTGAA--------ACATTACCAATTGCATTAAAC-TAAATTATTCTGTCA-GATTCTA-CCGTTT
gi|23 : taTG------GCTT--TACT-ATCG-TA---------ATGTACAGTGT----------AATGTACATCTACAAGCTCATTTCCCGCGGTCTATG-GATCGCCTGTGGCATGGCTCCTCAGGCTTCCCTTCGGAATCAAT--AGTGAAA
gi|24 : tatgtcgtatccag-TTCTAATTTTGTA--CA--CAA---TTCA---------------GTACTGAA--------ACATCACC-------------GT---CAA-TCTGCCATCATTGAATGACTCAAAGCATGGAGCGGATTTACTTAAGCATGTTTTCAATCC-AATCAATTTTTTGTCTGTGTATC
gi|25 : T---TTA-TCTGCCATAATTGTATCTGTTT
gi|25 : cTGTTAT-TCTTACACTGAGTTTAT---AAAATATTACATGTTATTATTGT------ATTGTGTCATTTAGATATTGAAATGAAATTTGTTTGAAtacaaatgtatcgatgttattcttacactgagtttataaaatattacatgttattattgtattgtgtcatttagatattgaaatgaaatttgtttgaa
gi|26 : ctttatctgccataattgtatctgttttacaaatgtatcgaCGGATTTACATAAGCACGCTTTCAATCC-AATCTATTTTCTCTCTATGTATCAT-TCTTACA----GCTTAT---AAAATA-------TTAT---TGT------ATTGCAACATATAGATATTGAAATAAAATATGTTTAAAC
gi|27 : TAAACATGCTTTCAATCC-AATCCATTTTCTGTCTGTGTATCAT-TCTTACA----GTTTATATAAAAATATTACATATTAT---TGT------ATTGTAACACATAGCTATTAAAATAAAATATGTTTAAA
gi|29 : TGGATCGGATTAACATAAGCATGT----AATCT-AATCTATTTTCTGT----GTACC-----------------TGT---G---TATTAC----------TGT------ATTGTAACATAAAGATATTAAAACAAAATATGTTTAAA
gi|3 : TACTCCAACTTGAGAAGCACAAT---GGCGAATGAACTTCGTAATATAACTACACTATCTCTTGACATTTTACTTTT-TGGCAATTGTAATCTATCTTTACAGCAAAACAATGCGATCTTCAAATCTGTTCATATCTACAGTATTAAGAGCAATCGATTCTCTTAAGGTGGCCTCTTGTAGT-CTTA--TA--TA-TA-TATTTT-ATTT-ATA------GTTT--TA-T-AT-A-TA--------CATGTAC----T----------AATGTGGAACCAATAGCTAAATTCTCACGGTCTACG-GATTGCCCCCAGTACGACTCGTCAGACTTCCCTTTGACATCAGC--AGTAAAAGNNN-NN-----------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------G--------------C----------AATTTAGAATTAATATAATAAATATAAACTTT-----AGT-TC-TACTAACTTTCTA--CA--TAA---TTTATTAAC-GTAAATTAGGTACTGAA--------ACATTACCAATAACATTAAACGT---TTA-TCTGCCATCATTGTATCTGTTTAAGCATAGAGCGGATTTACATAAGCATGCTTTCAATCC-AATCCATTTTATATCTGTGTATCAT-TCTTACA----GCTTAT---AAAATATTACATGTTAT---TGT------ATTGCAACATATAGATAATGAAATAAAATATGTTCAAACT
gi|30 : CAATAGCTAAATTCTCGCGGTCTACG-GATTGCTCCCGGTACGGCTCATCAGACTTCCCTTCGATATCAGC--AGTAAGA
gi|31 : CAATAGCTAAATTCTCGCGGTCTACG-GATTGCTCCCGGTACGGCTCATCAGACTTCCCTTCGATATCAGC--AGTAAGA
gi|32 : TCGTAGTATAACTTTAAATTCTCTAGATACTTTACATTC-TGGCAATAGTAATCTGTCATTGCAGCAAAATAAT
gi|4 : CAAAATAATGCGATCTTCAAATCTGTTTATAACTACATTAGTAAGAGCAATCGATTCTCTTAAGGTGGTCTCGTGCAGT-CTTA--TA--TA-TA-T-TTTT-ATTT-ATAATTTTTGTTC--TA-T-AT-A-TA--------CATGTAT----T----------TATGTGGAACCAATAGCTAATTACCCTCGGTCTATG-GATTGCCCCCCGTATGGCTCGTCAGACTTCCCTTTGACATCAGC--AGTAAAAGCCC-GA-----------CAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------NNNNNNNNNNNNT--C----------AATTTAGAATTAATATAATAAATACATACGTT-----TGT-TC-TCCTAACTTTCTA--CA--CAA---TTTATTAAC-GTAAATTAGGTACTGAAACATTGAAACATTACCAATTACACTAAACGT---TTA-TCTGCCACCATTGTATCTGTTTAAGCATGGAGCGGATTTACATAAGCATGCTTTCAATCC-AATCCATTTTCTATCTGTGTATCAT-TCTTACA----GCTTAT---AAAATATTACATGTTAT---TGT------ATTGCAACATATAGATATTGAAATAAAATATGTTTGAA
gi|5 : TACTCCAACTTGAGAAGCAAAAT---GACGAATGAACTTCGTAATATAACTACAATATCTCTCGACATTTTACTTTT-CGGCAATTGTAATCTATCTTTAGAGCAAAATAATGCGATCTTCAAATCTGTTCATAACTACATTATTAAGAGCAATCGATTGTCTTAAGGTGGTCTCTTGTAGT-CTTA--TA--TA-TATT-TTTT-ATTT-ATA------GTTTTATA-T-AT-A-TA--------TATGTAC----T----------TATGTGGAACCAATACATTATTTCCCGCGGTCTATG-GATCGCCCCCCGTATGGCTCGTCAGACTTCCCTTTGACATCAGC--AGTAAAAGCCC-GA-----------CAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------NNNNNNNNNNNNNNTC----------AATTTAGAATTAATATAATAAATACAAACTTT-----TGT-TC-TACTA-----------A--CAA---TTTATTAAA-GTAAATTAGGTACTGAA--------ACATTACCAATAATAT
gi|6 : gcAAGGTGGTCTTTTGTAGT-CTTC--TA--TT-TA-T-TTTTTATTG-ATA------GTTA--TA-C-AT-A-TA--------AATGTAC----T----------AATGTGGAACCAATAGCTAATTTCCCGCGGTCTATG-CATCGCCTCCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNN-NN-----------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------NNA------------C----------AATTTAGAATCAATTTAATAAATACAAACTTT-----TGT-TC-TACTAATTTTCGA--CA--CTA---TGTATTAAC-GTAAATAAGGTACTGAA--------ACATAACCAATAACATTTAACGT---TTA-TCTGCCAACTTTGTATCTGTTTAAGCATGGAGCGGATTTACATAAGCATTCTTTCAATCC-AATCCATTTTCTATCAGTGTATCAT-TCTTACA----GCTTAT---AAAATACTACATGTTAT---TGT------ATTGCAACATAAAGATATTGAAATAAAATATGTTTAAA
gi|7 : TACTCCAACTTGAGAAGCACAAT---GGCGAATGAACTTCGTAATATAACTACACTATCTCTCGACATTTTACTTTT-TGGCAATTGTAATCTATCTTTACAGCAAAATAATGCGATCTTCAAATCTGTTCATAACTACATTATTAAGAGCAATCGATTCTCTTAAGGTGGCCTCTTGTAGT-CTTA--TA--TATTT-T-TTTT-ATTT-ATA------GTTT--TA-T-AT-A-TA--------CATGTAC----T----------AATATGGAACCAATAGCTAAATTTTTGCGGTCTGCG-GATTGCCCCTGGTACGGCTCGTCTGACTTCCCTTTGACATCAGC--AGTAAA
gi|8 : gcTGAGAAGCACAAT---GGCCAATGAACTTCGTAATATAACTACAATATCTCTCGACATTTTACTTTT-TGGCAATTGTAATCTATCTTTACAGCAAAATAATGCGATCTTCAAATCTGTTCATAACTACATTATTAAGAGCAATCGATTCTCTTAAGGTGGCCTCTTGTAGT-CTAA--TA--TA-TATT-TTTT-ATTT-ATA------GTTT--TA-T-AT-A-TA--------CA--------------------AATGTGGAACCAATTACTAAATTCTCGCGGTCTAAG-GATTGCCCCCGGTACGGCTCGTCAGACTTCCCTTTGACATCAGC--AGTAAAA
gi|9 : --------------C----------AATTTAGAATTAATATAATAAATATAAACTTT-----TGT-TC-TACTAACTTTCTA--CA--TAA---TTTACAAAC-GTAAATTAGGTAATGAA--------ACATTACCAATAACATTAAAAGT---TTA-TCTGCCATCATTGTATCTGTTTAAGCATGGAGCGGATTTACATAAGCATGCTTTCAATCC-AATCCATTTTCTATCTGTGTATCAT-TCTTACA----GCTTAT---AAAATATTACATGTTAT---TGT------GTTGCAACATATAGATAATGAAACAAAATATGTTCAA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|28 ): TATAACTTATAGTGATTTTATGCATATACACGAAAGAAAAGCTTTGTAATGCCATGAAACGAAAAACGCCTATATGTTGTTAAATTACCATCAAAGTAACTATATTCATTTTGTT
Unaligned ( gi|33 ): TTACATTACTGTTAGTGATTGTCATAATTTAGACAAAAAGAAGGTGTCAGTTATGACTGATACGA
Unaligned ( gi|34 ): ACTAAATGTTTAATTAATTGAAACATAGATTCCCTAAATCAATTGCACTGTATCATGTT
Unaligned ( gi|35 ): GCCCGACAANNNNNNNNNNNNNNNNNNNNNNN