lowQualScore : 11111 1111 111 1
lowQualScore : 2 33 55555 2 2 00000 2 9 1 1 2 55 11 2 33 4 55555 0000 0 2 555 888 8 66 2 1 3 3 22 3 1 4 2 4 55 2
lowQualScore : . .. ..... . . ..... . . . . . .. .. . .. . ..... .... . . ... ... . .. . . . . .. . . . . . .. .
lowQualScore : 9 99 44444 5 4 55555 4 4 0 6 4 66 11 7 11 8 66666 2222 9 4 666 222 5 11 4 2 4 4 99 9 8 2 2 6 55 9
consensus : GATGAAAATATAAAC-AA--TAATACT----CTAC-TTCCAGAGTG-T----AT-CT-TTAAAACTAATAA-TACCNTTGCAAACATNATCATNA-----CTGAATC--AGACGNAATT---GA---TATTATNGATAC-NTTAGACC-CAAACAAANCTGTC-GGAGAAGACAAAATNAGTCACAGANT-TTTANAGTTN-ACAAAACACACTATATC
Reference ( gi|10 ) : GATGAAAATATAAAC-AA--TAATACT----CTAC-TTCCAGAGTG-T----AT-CT-TTAAAACTAATAA-TACCATTGCAAACATGATCATTA-----CTGAATC--AGACATAATT---GA---TATTATTGGTAC-TTTAGACC-CAAATAAAGCTGTC-GGAGAAGACAAAATTAGTCACAGAAT-TTTACAGTTT-ACTAAACACACTATATC
gi|9 : GATGAAAATATAAAC-AA--TAATACT----CTAC-TTCCAGAGTG-T----AT-CT-TTAAAACTAATAA-TACCATTGCAAACATGATCATTA-----CTGAATC--AGACATAATT---GA---TATTATTGGTAC-TTTAGACC-CAAAAAAAGCTGTC-GGAGAAGACAAAATTAGTCACAGAAT-TTTACAGTTT-ACTAAACACACTATATC
gi|7 : GATGAAAATATAAAC-AA--TAATACT----CTAC-TTCCAGAGTG-T----AT-CT-TTAAAACTAATAA-TACCATTGCAAACATGATCATTA-----CTGAATC--AGACATAATT---GA---TATTATCGGTAC-TTTAGACC-CAAATAAAGCTGTC-GGAGAAGACAAAAATAGTCACAGAAT-TTTACAGTTT-ACAAAACACACTATATC
gi|8 : aGATGAAAATATAAAC-AA--TAATACT----CTAC-TTCCAGAGTG-T----AT-AT-TTAAAACTAATAA-TACCATTGCAAACATGATCATTA-----CTGAATC--AGACATAATT---GA---CATTACCGGTAC-TTTAGACC-CAAATAAAGCTGTC-GGAGAAGACAAAATTAGTCACATAAT-TTTACAGTTT-ACTAAACACACTATATC
gi|14 : aGATGAAAATATAAAC-AA--TAATACT----CTAC-TTCCAGAGTG-T----AT-CT-TTAAAACTATTAA-TACCATTGCAAACATGATCATTA-----CTGAATC--AGACATAATT---GA---TATTATCGGTAC-TTTAGACC-CAAATAAAGCTGTT-GGAGAAGACAAAATTAGTCACAGAAT-TTTACAGTTT-ACAAAACACA
gi|11 : aGATGAAAATATAAAC-AA--TAATACT----CTAC-TTTCAGAGTG-T----AT-CT-TTAAAACGAATAC-TACCATTGCAAACATGATCATTAATTTACTGAATC--AGACATAATT---GA---TATTATCGGTAC-TTTAGACC-CAAATAAAGCTGTC-GGAGAAGACAAAATAAGTCACAGAAT-TTTACAGTTT-ACAAAACACAC
gi|17 : GATGAAAATATAAAC-AA--TAAAACT----CTAC-TTCCAGAGTG-T----AT-CT-TTAAAACTAATAA-TACCATTGCAAACATGATCATTA-----CTGAATC--AGACATAATT---GA---TATTATCGGTAC-TTTAGACC-CAAATAAAGCTGTC-GGAGAAGACAAAATTA
gi|19 : GATGAAAATATAAAC-AA--TAATACT----CTAC-TTCCAGAGTG-T----AT-CT-TTAAAACTAATAA-TACCATTGCAAACATGATCATTA-----CTGAATC--AGACAAAATT---
gi|1 : TAAGC-AAAACAATACA----TTAC-TACCAAATTA-T-----T-CTCTTAAAACAAACAA-TACACTAACAAATATTAGGATAA-----CTGAA-----AATGAAATT---AAGGTTATTATATATAC-ATTAAGTC-AAAGCAAATCAGTT-GGAGAAGATGAAAGCAATCAAAAACT-TTGATAATTA-ACCAAAagtcacagaattttacagtttacaaaacacactatatct
gi|13 : gtctAAAC-----TAATATT----ACAC-TTCCA-AATGAA----AA-CT-CGAAAACTTATAA-TTTTCTTTCTAATATAATTATAA-----CAAAGTC--TGAAATAGAA---GA---TACGATTGACAT-CCTTGACC-CTAACAAATCTGTT-GGGAATGATAAAATAAGTCACAAAGT-TTTGAAGTAT-ACAAAATATAGTATTTCatatgtatttctacaccattggttctgctt
gi|6 : atgAAACGAA--TATTAC-------AT-TTC-AAAATG-A----AAACT-CGAAAACTAATAA-TTTTCTTTCTAATATTATTATAA-----CTAAGTCTAAAAGAGAA-----GA---TACGATTAATAT-CCTTGACA-CTAACACATCTGTT-AGGAATGATAAAATAAGTCACAAAGT-TTGA-AGTAT-ACAGAATATAGTAtaaacc
gi|12 : agtaatgAAT-AA--TGAAACTGATATTACATTCCCGAATA---------CT-CGAAAACTAATAA-TGCTCTTTCCAATATTATTATAA-----CAAAGTC--TGAAATAGAA---AA---TATGATCGGTAT-CCTTGACC-CAAACAAATCTGTT-GGGAATGAT-AAATAAGTCACACAGT-TTTGAAGTAA-ACAAAACAattctaaacctcttgta
gi|5 : -AA--CAATACT----TTAC-TATCAACTTG-T-----T-CTCTTAAAACAAACAA-TACTCTAACAAATATCAAGATAA-----CTGAA-----AATGAAATTAAGGA---TATTATAGATACATTTAGTCC-C-AACAAATCAGTT-GGAGAAGATAAAATCAGTCATAAACT-TTTAAAATTA-AC-AAATA-ACTGTATttttttctaaacctattt
gi|4 : gcaa-AA--CAATACT----TTAC-TACCAACTTG-T-----T-CTCTTAAAACAAACAA-TACTCTAACAAATATCAAGATAA-----CTGAA-----AATGAAATTAAGGA---TATTATAGATAC-ATTAAATC-TCAACAAATCAGTT-GGAGAAGATAAAATCAATCATAAACT-TTTAAAATTA-ACAAAAttcttaaccactggttatgcttt
gi|3 : agcaa-AA--CAATACA----TTAC-TACCAAATTA-T----TT-TC-TTAAAACAAACAA-TACACTAACAAATATTAGGATAA-----CTGA-----AAATGAAATT---AAGGTTATTATATATAC-ATTAAGTC-AAAGCAAATCAGTT-GGAGAAAATGAAAGCAATCAAAAACT-TTGATAATTA-ACCAAAaaatgtatgtctaaaccattggttatgcttt
gi|16 : tcttgagcaaACT----TTAA-TTCCTGAGTT-T----AA-CT-T-AAAACTAATAA-CAGT-TTAAAAACGTGCACGTTA-----CAGAGAA--AGACATTTTA---GA---TATGATAAATAC-CATAAATCTCAAA-AAAG-TGACTGGCGATGACAAATTAAGTCACAGAATATTTAT--TTTAACCAAAatatgtatttctacaccattggttctgct
gi|2 : T----TTAC-TACCAACGTC-TTAAAAT-CT-T-AAAACAAACAAATACTA--ACAAATATCAAGATAA-----CTG---C--AAATGAAATTAAGGA---TATTATAGATAC-ATTAAATC-CCAACAAATCAATT-GAAGAAGATAAAATCAGTCATACACT-TTTAAAATTA-ACagttctatttcta
gi|15 : atcatgagcaaagtTG-T-----T-CTCTTAAAACAAACAA-TACTCTAACAAATATCAAGATAA-----CTGAA-----AATGAAATTAAGGA---TATTATAGATAC-ATTAAATC-CCAACAAATCAGTT-CAAGAAGATAAAATCAGTCATAAACT-TTTAAAATTA-AC-AAA-AAACTGTATaataagtagtatttctaaaccatcggttatgcttc
gi|20 : ctaccaactA-----CTGAGAA--AGAAATAAAC---GA---TATTATACAAAC-ATTAAATA-CAAATAAAACTGTT-GGAGAGGACATAACAAGCCATACACT-TTTttctaaaccattggttatgcttt
gi|21 : taccaaccttcaaactgttttctaataagtcgttctaGCTGTT-AGGAAAGACAAATTTAGTCACAGACC-TTTACAGTAG-TCTTAACACAGTATATCtaaaa
gi|19 : AGACAAAATTAGTCACAGAAT-TTTACAGTTT-ACAAAACACACTATATCta
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): AGTAATGAAACAAATATAACATTTCCAAATGAAAACTCGAAAACTTATAATTCTTTTTCTAATATTATTATAACAAAGTCTGAAATAGAAGATACGATTGACATCATTTACCCTAAAACATCTGTTGGGGATGATAAAA
Unaligned ( gi|22 ): AAATTAGTCACAAAGTGTAGAAGTATACAAAATATAATATTTCTAAACCTCTAGA
Alignments
lowQualScore : 1111 111
lowQualScore : 2 33 5555 2 2 99999 2 8 0 1 2 22 0 1 11 1 55555 1111 33 888 333 777 1 33 2 0 0 1 22 1 1 1 2 3 1 77 1
lowQualScore : . .. .... . . ..... . . . . . .. . . .. . ..... .... .. ... ... ... . .. . . . . .. . . . . . . .. .
lowQualScore : 7 77 0000 4 2 44444 2 9 4 0 2 88 4 0 99 0 33333 6666 66 444 999 888 0 22 2 6 4 0 22 0 2 0 1 2 0 55 0
consensus : GATGAAAATATAAAC-AA--TAATACT----CTAC-TTCCAGAGTG-T----AT-CT-TTAAAACTAATAA-TACCNTTGCAAACATGATCATNA-----CTGAATC--AGACGNAATT---G---A---TATTATNGGTAC-NTTAGACC-CAAACAAANCTGTC-GGAGAAGACAAAATNAGTCACAGANT-TTTACAGTTNA--CAAAACACACTATATC
Reference ( family-1204 ) : GATGAAAATATAAAC-AA--TAATACT----CTAC-TTCCAGAGTG-T----AT-CT-TTAAAACTAATAA-TACCNTTGCAAACATNATCATNA-----CTGAATC--AGACGNAATT---G---A---TATTATNGATAC-NTTAGACC-CAAACAAANCTGTC-GGAGAAGACAAAATNAGTCACAGANT-TTTANAGTTNA--CAAAACACACTATATC
gi|1 : TAAGC-AAAACAATACA----TTAC-TACCAAATTA-T-----T-CTCTTAAAACAAACAA-TACACTAACAAATATTAGGATAA-----CTGAA-----AATGAAATT---A---AGGTTATTATATATAC-ATTAAGTC-AAAGCAAATCAGTT-GGAGAAGATGAAAGCAATCAAAAACT-TTGATAATTAAC-CAAAATA
gi|10 : gtctGATGAAAATATAAAC-AA--TAATACT----CTAC-TTCCAGAGTG-T----AT-CT-TTAAAACTAATAA-TACCATTGCAAACATGATCATTA-----CTGAATC--AGACATAATT---G---A---TATTATTGGTAC-TTTAGACC-CAAATAAAGCTGTC-GGAGAAGACAAAATTAGTCACAGAAT-TTTACAGTTTA--CTAAACACACTATATCtgtatttctacaccattggttctgctt
gi|11 : GATGAAAATATAAAC-AA--TAATACT----CTAC-TTTCAGAGTG-T----AT-CT-TTAAAACGAATAC-TACCATTGCAAACATGATCATTAATTTACTGAATC--AGACATAATT---G---A---TATTATCGGTAC-TTTAGACC-CAAATAAAGCTGTC-GGAGAAGACAAAATAAGTCACAGAAT-TTTACAGTTTA--CAAAACACAC
gi|12 : AAT-AA--TGAAACTGATATTACATTCCCGAATA---------CT-CGAAAACTAATAA-TGCTCTTTCCAATATTATTATAA-----CAAAGTC-----TGAAATA---GAAAA---TATGATCGGTAT-CCTTGACC-CAAACAAATCTGTT-GGGAATGAT-AAATAAGTCACACAGT-TTTGAAGTAAA--CAAAACA
gi|13 : AAAC-----TAATATT----ACAC-TTCCA-AATGAA----AA-CT-CGAAAACTTATAA-TTTTCTTTCTAATATAATTATAA-----CAAAGTCTGAAATAGAA-----G---A---TACGATTGACAT-CCTTGACC-CTAACAAATCTGTT-GGGAATGATAAAATAAGTCACAAAGT-TTTGAAGTATA--CAAAATATAGTATTTCttttttctaaacctattt
gi|14 : atgGATGAAAATATAAAC-AA--TAATACT----CTAC-TTCCAGAGTG-T----AT-CT-TTAAAACTATTAA-TACCATTGCAAACATGATCATTA-----CTGAATC--AGACATAATT---G---A---TATTATCGGTAC-TTTAGACC-CAAATAAAGCTGTT-GGAGAAGACAAAATTAGTCACAGAAT-TTTACAGTTTA--CAAAACACtaaacc
gi|15 : aTG-T-----T-CTCTTAAAACAAACAA-TACTCTAACAAATATCAAGATAA-----CTGAA-----AATGAAATTAAGG---A---TATTATAGATAC-ATTAAATC-CCAACAAATCAGTT-CAAGAAGATAAAATCAGTCATAAACT-TTTAAAATTAA--CAAAA-A-ACTGTAT
gi|16 : ctaccaactACT----TTAA-TTCCTGAGTT-T----AA-CT-T-AAAACTAATAA-CAG-TTTAAAAACGTGCACGTTA-----CAGAGAA--AGAC---ATTTTAG---A---TATGATAAATAC-CATAAATCTCAAA-AAAG-TGACTGGCGATGACAAATTAAGTCACAGAATATTTAT--TTTAACCAAAAttctaaaccattggttatgcttt
gi|17 : GATGAAAATATAAAC-AA--TAAAACT----CTAC-TTCCAGAGTG-T----AT-CT-TTAAAACTAATAA-TACCATTGCAAACATGATCATTA-----CTGAATC--AGACATAATT---G---A---TATTATCGGTAC-TTTAGACC-CAAATAAAGCTGTC-GGAGAAGACAAAATTAgttctatttcta
gi|19 : GATGAAAATATAAAC-AA--TAATACT----CTAC-TTCCAGAGTG-T----AT-CT-TTAAAACTAATAA-TACCATTGCAAACATGATCATTA-----CTGAATC--AGACAAAATT---
gi|19 : AGACAAAATTAGTCACAGAAT-TTTACAGTTTA--CAAAACACACTATATCagtcacagaattttacagtttacaaaacacactatatct
gi|2 : gatgaaaatataaacaataatactctacttccagagtgtatctttaaaactaataataccattgcaaacatgatcattactgaatcT----TTAC-TACCAACGTC-TTAAAAT-CT-T-AAAACAAACAAATACTA--ACAAATATCAAGATAA-----CTG---C--AAATGAAATTAAGG---A---TATTATAGATAC-ATTAAATC-CCAACAAATCAATT-GAAGAAGATAAAATCAGTCATACACT-TTTAAAATTAA--CAAt
gi|20 : atcatgagcaaagtTAA-----CTGAGAA--AGAAATAAAC---G---A---TATTATACAAAC-ATTAAATA-CAAATAAAACTGTT-GGAGAGGACATAACAAGCCATACACT-TTTtaagtagtatttctaaaccatcggttatgcttc
gi|21 : taccaaccttcaaactgttttctaataagtcgttcCTGTT-AGGAAAGACAAATTTAGTCACAGACC-TTTACAGTAGT--CTTAACACAGTATATCtaaaa
gi|3 : g-AA--CAATACA----TTAC-TACCAAATTA-T----TT-TC-TTAAAACAAACAA-TACACTAACAAATATTAGGATAA-----CTGA-----AAATGAAATT---A---AGGTTATTATATATAC-ATTAAGTC-AAAGCAAATCAGTT-GGAGAAAATGAAAGCAATCAAAAACT-TTGATAATTAAC-CAAAATAta
gi|4 : tcttgagcaa-AA--CAATACT----TTAC-TACCAACTTG-T-----T-CTCTTAAAACAAACAA-TACTCTAACAAATATCAAGATAA-----CTGAA-----AATGAAATTAAGG---A---TATTATAGATAC-ATTAAATC-TCAACAAATCAGTT-GGAGAAGATAAAATCAATCATAAACT-TTTAAAATTAA--CAAAAtgtatttctacaccattggttctgct
gi|5 : agcaa-AA--CAATACT----TTAC-TATCAACTTG-T-----T-CTCTTAAAACAAACAA-TACTCTAACAAATATCAAGATAA-----CTGAA-----AATGAAATTAAGG---A---TATTATAGATACATTTAGTCC-C-AACAAATCAGTT-GGAGAAGATAAAATCAGTCATAAACT-TTTAAAATTAA--C-AAATA-ACTGTATaaatgtatgtctaaaccattggttatgcttt
gi|6 : gcaaAAACGAA--TATTAC-------AT-TTC-AAAATG-A----AAACT-CGAAAACTAATAA-TTTTCTTTCTAATATTATTATAA-----CTAAGTCTAAAAGAGAA-----G---A---TACGATTAATAT-CCTTGACA-CTAACACATCTGTT-AGGAATGATAAAATAAGTCACAAAGT-TTGA-AGTATA--CAGAATATAGTAttcttaaccactggttatgcttt
gi|7 : agtaatgGATGAAAATATAAAC-AA--TAATACT----CTAC-TTCCAGAGTG-T----AT-CT-TTAAAACTAATAA-TACCATTGCAAACATGATCATTA-----CTGAATC--AGACATAATT---G---A---TATTATCGGTAC-TTTAGACC-CAAATAAAGCTGTC-GGAGAAGACAAAAATAGTCACAGAAT-TTTACAGTTTA--CAAAACACACTATATCattctaaacctcttgta
gi|8 : aGATGAAAATATAAAC-AA--TAATACT----CTAC-TTCCAGAGTG-T----AT-AT-TTAAAACTAATAA-TACCATTGCAAACATGATCATTA-----CTGAATC--AGACATAATT---G---A---CATTACCGGTAC-TTTAGACC-CAAATAAAGCTGTC-GGAGAAGACAAAATTAGTCACATAAT-TTTACAGTTTA--CTAAACACACTATATC
gi|9 : aGATGAAAATATAAAC-AA--TAATACT----CTAC-TTCCAGAGTG-T----AT-CT-TTAAAACTAATAA-TACCATTGCAAACATGATCATTA-----CTGAATC--AGACATAATT---G---A---TATTATTGGTAC-TTTAGACC-CAAAAAAAGCTGTC-GGAGAAGACAAAATTAGTCACAGAAT-TTTACAGTTTA--CTAAACACACTATATC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AGTAATGAAACAAATATAACATTTCCAAATGAAAACTCGAAAACTTATAATTCTTTTTCTAATATTATTATAACAAAGTCTGAAATAGAAGATACGATTGACATCATTTACCCTAAAACATCTGTTGGGGATGATAAAA
Unaligned ( gi|22 ): AAATTAGTCACAAAGTGTAGAAGTATACAAAATATAATATTTCTAAACCTCTAGA
Alignments
lowQualScore : 1111 111
lowQualScore : 2 33 5555 2 2 99999 2 8 0 1 2 22 0 2 11 1 55555 1111 33 888 333 777 1 33 2 0 0 1 22 1 1 1 2 3 1 77 1
lowQualScore : . .. .... . . ..... . . . . . .. . . .. . ..... .... .. ... ... ... . .. . . . . .. . . . . . . .. .
lowQualScore : 7 77 0000 4 2 44444 2 9 4 0 2 88 4 0 99 0 33333 6666 66 444 999 888 0 22 2 6 4 0 22 0 2 0 1 8 0 55 0
consensus : GATGAAAATATAAAC-AA--TAATACT----CTAC-TTCCAGAGTG-T----AT-CT-TTAAAACTAATAA-TACCNTTGCAAACATGATCATNA-----CTGAATC--AGACGNAATT---G---A---TATTATNGGTAC-NTTAGACC-CAAACAAANCTGTC-GGAGAAGACAAAATNAGTCACAGANT-TTTACAGTTNA--CAAAACACACTATATC
Reference ( family-1204 ) : GATGAAAATATAAAC-AA--TAATACT----CTAC-TTCCAGAGTG-T----AT-CT-TTAAAACTAATAA-TACCNTTGCAAACATGATCATNA-----CTGAATC--AGACGNAATT---G---A---TATTATNGGTAC-NTTAGACC-CAAACAAANCTGTC-GGAGAAGACAAAATNAGTCACAGANT-TTTACAGTTNA--CAAAACACACTATATC
gi|1 : TAAGC-AAAACAATACA----TTAC-TACCAAATTA-T-----T-CTCTTAAAACAAACAA-TACACTAACAAATATTAGGATAA-----CTGAA-----AATGAAATT---A---AGGTTATTATATATAC-ATTAAGTC-AAAGCAAATCAGTT-GGAGAAGATGAAAGCAATCAAAAACT-TTGATAATTAAC-CAAAATA
gi|10 : gtctGATGAAAATATAAAC-AA--TAATACT----CTAC-TTCCAGAGTG-T----AT-CT-TTAAAACTAATAA-TACCATTGCAAACATGATCATTA-----CTGAATC--AGACATAATT---G---A---TATTATTGGTAC-TTTAGACC-CAAATAAAGCTGTC-GGAGAAGACAAAATTAGTCACAGAAT-TTTACAGTTTA--CTAAACACACTATATCtgtatttctacaccattggttctgctt
gi|11 : GATGAAAATATAAAC-AA--TAATACT----CTAC-TTTCAGAGTG-T----AT-CT-TTAAAACGAATAC-TACCATTGCAAACATGATCATTAATTTACTGAATC--AGACATAATT---G---A---TATTATCGGTAC-TTTAGACC-CAAATAAAGCTGTC-GGAGAAGACAAAATAAGTCACAGAAT-TTTACAGTTTA--CAAAACACAC
gi|12 : AAT-AA--TGAAACTGATATTACATTCCCGAATA---------CT-CGAAAACTAATAA-TGCTCTTTCCAATATTATTATAA-----CAAAGTC-----TGAAATA---GAAAA---TATGATCGGTAT-CCTTGACC-CAAACAAATCTGTT-GGGAATGAT-AAATAAGTCACACAGT-TTTGAAGTAAA--CAAAACA
gi|13 : AAAC-----TAATATT----ACAC-TTCCA-AATGAA----AA-CT-CGAAAACTTATAA-TTTTCTTTCTAATATAATTATAA-----CAAAGTCTGAAATAGAA-----G---A---TACGATTGACAT-CCTTGACC-CTAACAAATCTGTT-GGGAATGATAAAATAAGTCACAAAGT-TTTGAAGTATA--CAAAATATAGTATTTCttttttctaaacctattt
gi|14 : atgGATGAAAATATAAAC-AA--TAATACT----CTAC-TTCCAGAGTG-T----AT-CT-TTAAAACTATTAA-TACCATTGCAAACATGATCATTA-----CTGAATC--AGACATAATT---G---A---TATTATCGGTAC-TTTAGACC-CAAATAAAGCTGTT-GGAGAAGACAAAATTAGTCACAGAAT-TTTACAGTTTA--CAAAACACtaaacc
gi|15 : aTG-T-----T-CTCTTAAAACAAACAA-TACTCTAACAAATATCAAGATAA-----CTGAA-----AATGAAATTAAGG---A---TATTATAGATAC-ATTAAATC-CCAACAAATCAGTT-CAAGAAGATAAAATCAGTCATAAACT-TTTAAAATTAA--CAAAA-A-ACTGTAT
gi|16 : ctaccaactACT----TTAA-TTCCTGAGTT-T----AA-CT-T-AAAACTAATAA-CAG-TTTAAAAACGTGCACGTTA-----CAGAGAA--AGAC---ATTTTAG---A---TATGATAAATAC-CATAAATCTCAAA-AAAG-TGACTGGCGATGACAAATTAAGTCACAGAATATTTAT--TTTAACCAAAAttctaaaccattggttatgcttt
gi|17 : GATGAAAATATAAAC-AA--TAAAACT----CTAC-TTCCAGAGTG-T----AT-CT-TTAAAACTAATAA-TACCATTGCAAACATGATCATTA-----CTGAATC--AGACATAATT---G---A---TATTATCGGTAC-TTTAGACC-CAAATAAAGCTGTC-GGAGAAGACAAAATTAgttctatttcta
gi|19 : GATGAAAATATAAAC-AA--TAATACT----CTAC-TTCCAGAGTG-T----AT-CT-TTAAAACTAATAA-TACCATTGCAAACATGATCATTA-----CTGAATC--AGACAAAATT---
gi|19 : AGACAAAATTAGTCACAGAAT-TTTACAGTTTA--CAAAACACACTATATCagtcacagaattttacagtttacaaaacacactatatct
gi|2 : gatgaaaatataaacaataatactctacttccagagtgtatctttaaaactaataataccattgcaaacatgatcattactgaatcT----TTAC-TACCAACGTC-TTAAAAT-CT-T-AAAACAAACAAATACTA--ACAAATATCAAGATAA-----CTG---C--AAATGAAATTAAGG---A---TATTATAGATAC-ATTAAATC-CCAACAAATCAATT-GAAGAAGATAAAATCAGTCATACACT-TTTAAAATTAA--CAAt
gi|20 : atcatgagcaaagtTAA-----CTGAGAA--AGAAATAAAC---G---A---TATTATACAAAC-ATTAAATA-CAAATAAAACTGTT-GGAGAGGACATAACAAGCCATACACT-TTTtaagtagtatttctaaaccatcggttatgcttc
gi|21 : taccaaccttcaaactgttttctaataagtcgttcCTGTT-AGGAAAGACAAATTTAGTCACAGACC-TTTACAGTAGT--CTTAACACAGTATATCtaaaa
gi|3 : g-AA--CAATACA----TTAC-TACCAAATTA-T----TT-TC-TTAAAACAAACAA-TACACTAACAAATATTAGGATAA-----CTGA-----AAATGAAATT---A---AGGTTATTATATATAC-ATTAAGTC-AAAGCAAATCAGTT-GGAGAAAATGAAAGCAATCAAAAACT-TTGATAATTAAC-CAAAATAta
gi|4 : tcttgagcaa-AA--CAATACT----TTAC-TACCAACTTG-T-----T-CTCTTAAAACAAACAA-TACTCTAACAAATATCAAGATAA-----CTGAA-----AATGAAATTAAGG---A---TATTATAGATAC-ATTAAATC-TCAACAAATCAGTT-GGAGAAGATAAAATCAATCATAAACT-TTTAAAATTAA--CAAAAtgtatttctacaccattggttctgct
gi|5 : agcaa-AA--CAATACT----TTAC-TATCAACTTG-T-----T-CTCTTAAAACAAACAA-TACTCTAACAAATATCAAGATAA-----CTGAA-----AATGAAATTAAGG---A---TATTATAGATACATTTAGTCC-C-AACAAATCAGTT-GGAGAAGATAAAATCAGTCATAAACT-TTTAAAATTAA--C-AAATA-ACTGTATaaatgtatgtctaaaccattggttatgcttt
gi|6 : gcaaAAACGAA--TATTAC-------AT-TTC-AAAATG-A----AAACT-CGAAAACTAATAA-TTTTCTTTCTAATATTATTATAA-----CTAAGTCTAAAAGAGAA-----G---A---TACGATTAATAT-CCTTGACA-CTAACACATCTGTT-AGGAATGATAAAATAAGTCACAAAGT-TTGA-AGTATA--CAGAATATAGTAttcttaaccactggttatgcttt
gi|7 : agtaatgGATGAAAATATAAAC-AA--TAATACT----CTAC-TTCCAGAGTG-T----AT-CT-TTAAAACTAATAA-TACCATTGCAAACATGATCATTA-----CTGAATC--AGACATAATT---G---A---TATTATCGGTAC-TTTAGACC-CAAATAAAGCTGTC-GGAGAAGACAAAAATAGTCACAGAAT-TTTACAGTTTA--CAAAACACACTATATCattctaaacctcttgta
gi|8 : aGATGAAAATATAAAC-AA--TAATACT----CTAC-TTCCAGAGTG-T----AT-AT-TTAAAACTAATAA-TACCATTGCAAACATGATCATTA-----CTGAATC--AGACATAATT---G---A---CATTACCGGTAC-TTTAGACC-CAAATAAAGCTGTC-GGAGAAGACAAAATTAGTCACATAAT-TTTACAGTTTA--CTAAACACACTATATC
gi|9 : aGATGAAAATATAAAC-AA--TAATACT----CTAC-TTCCAGAGTG-T----AT-CT-TTAAAACTAATAA-TACCATTGCAAACATGATCATTA-----CTGAATC--AGACATAATT---G---A---TATTATTGGTAC-TTTAGACC-CAAAAAAAGCTGTC-GGAGAAGACAAAATTAGTCACAGAAT-TTTACAGTTTA--CTAAACACACTATATC
blockSeqs : G . GATA A A TAAAA A C T A CA G TC T ATTTA TCTG AT AAG AAA GGT T AT T G CT T G A A C T AC C
blockSeqs : . . . . . A . C G . CA G TC T . TCTA AT TTA . . C T . G C A G A . C T C T
blockSeqs : . . . . . A . C T . TC T TT A . TC GA AAG . . C T . T C A C G . A A . C
blockSeqs : . . . . . A . . T . TC A TT A . TC AG AAG . . T C . T T A A G . A T . C
blockSeqs : . . . . . A . . T . CA G TC T . TC AT AAG . . C C . G T T G A . C T . C
blockSeqs : . . . . . A . . A . TC C AG A . TC GA . . . A T . T T C A C . A A . T
blockSeqs : . . . . . A . . T . CA G AC T . AA AT . . . A A . G T A G A . T T . C
blockSeqs : . . . . . A . . T . CA G TC T . TC AA . . . C C . G C T G A . C T . C
blockSeqs : . . . . . T . . T . TA G TC T . TC GA . . . A T . T T T C C . A A . C
blockSeqs : . . . . . A . . A . AC C AG A . AA AT . . . A A . A T C C C . C G . .
blockSeqs : . . . . . A . . A . TC T GG A . TC GA . . . A A . T T A G C . T A . .
blockSeqs : . . . . . A . . A . TC C AG A . TC GA . . . A A . T T T A C . A A .
blockSeqs : . . . . . A . . A . TC C AG A . TC GA . . . A A . T T C A C . A A .
blockSeqs : . . . . . . . . T . CA T TT A . C AG . . . T C . T T C A C . C T .
blockSeqs : . . . . . . T . CA G TC A . . AT . . . C T . G T C A G . C T .
blockSeqs : . . . . . . T . CA G TC T . . AT . . . C T . G C A G A . C T .
blockSeqs : . . . . T . T G TC T . . AT . . . T T . G C T T A . . T .
blockSeqs : T . . . . C T G A .
blockSeqs : T
blockSeqCons : ** A**** TC** *** **
originalCons : GATGAAAATATAAAC-AA--TAATACT----CTAC-TTCCAGAGTG-T----AT-CT-TTAAAACTAATAA-TACCNTTGCAAACATGATCATNA-----CTGAATC--AGACGNAATT---G---A---TATTATNGGTAC-NTTAGACC-CAAACAAANCTGTC-GGAGAAGACAAAATNAGTCACAGANT-TTTACAGTTNA--CAAAACACACTATATC
finalCons : GATGAAAATATAAAC-AA--TAATACT----CTAC-TTCCAGAGTG-TA----T-CT-TTAAAACTAATAA-TACCNTTGCAAACATGATCATNA-----CTGAATC--AGACGNAATT---G---A---TATTATNGGTAC-NTTAGACC-CAAACAAANCTGTC-GGAGAAGACAAAATNAGTCACAGANT-TTTACAGTTNA--CAAAACACACTATATC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AGTAATGAAACAAATATAACATTTCCAAATGAAAACTCGAAAACTTATAATTCTTTTTCTAATATTATTATAACAAAGTCTGAAATAGAAGATACGATTGACATCATTTACCCTAAAACATCTGTTGGGGATGATAAAA
Unaligned ( gi|22 ): AAATTAGTCACAAAGTGTAGAAGTATACAAAATATAATATTTCTAAACCTCTAGA
Alignments
lowQualScore : 1111 111
lowQualScore : 2 33 5555 2 2 99999 2 8 0 1 2 22 0 2 11 1 55555 1111 33 888 333 777 1 33 2 0 0 1 22 1 1 1 2 3 1 77 1
lowQualScore : . .. .... . . ..... . . . . . .. . . .. . ..... .... .. ... ... ... . .. . . . . .. . . . . . . .. .
lowQualScore : 7 77 0000 4 2 44444 2 9 4 0 2 88 4 0 99 0 33333 6666 66 444 999 888 0 22 2 6 4 0 22 0 2 0 1 8 0 55 0
consensus : GATGAAAATATAAAC-AA--TAATACT----CTAC-TTCCAGAGTG-T----AT-CT-TTAAAACTAATAA-TACCNTTGCAAACATGATCATNA-----CTGAATC--AGACGNAATT---G---A---TATTATNGGTAC-NTTAGACC-CAAACAAANCTGTC-GGAGAAGACAAAATNAGTCACAGANT-TTTACAGTTNA--CAAAACACACTATATC
Reference ( family-1204 ) : GATGAAAATATAAAC-AA--TAATACT----CTAC-TTCCAGAGTG-T----AT-CT-TTAAAACTAATAA-TACCNTTGCAAACATGATCATNA-----CTGAATC--AGACGNAATT---G---A---TATTATNGGTAC-NTTAGACC-CAAACAAANCTGTC-GGAGAAGACAAAATNAGTCACAGANT-TTTACAGTTNA--CAAAACACACTATATC
gi|1 : TAAGC-AAAACAATACA----TTAC-TACCAAATTA-T-----T-CTCTTAAAACAAACAA-TACACTAACAAATATTAGGATAA-----CTGAA-----AATGAAATT---A---AGGTTATTATATATAC-ATTAAGTC-AAAGCAAATCAGTT-GGAGAAGATGAAAGCAATCAAAAACT-TTGATAATTAAC-CAAAATA
gi|10 : gtctGATGAAAATATAAAC-AA--TAATACT----CTAC-TTCCAGAGTG-T----AT-CT-TTAAAACTAATAA-TACCATTGCAAACATGATCATTA-----CTGAATC--AGACATAATT---G---A---TATTATTGGTAC-TTTAGACC-CAAATAAAGCTGTC-GGAGAAGACAAAATTAGTCACAGAAT-TTTACAGTTTA--CTAAACACACTATATCtgtatttctacaccattggttctgctt
gi|11 : GATGAAAATATAAAC-AA--TAATACT----CTAC-TTTCAGAGTG-T----AT-CT-TTAAAACGAATAC-TACCATTGCAAACATGATCATTAATTTACTGAATC--AGACATAATT---G---A---TATTATCGGTAC-TTTAGACC-CAAATAAAGCTGTC-GGAGAAGACAAAATAAGTCACAGAAT-TTTACAGTTTA--CAAAACACAC
gi|12 : AAT-AA--TGAAACTGATATTACATTCCCGAATA---------CT-CGAAAACTAATAA-TGCTCTTTCCAATATTATTATAA-----CAAAGTC-----TGAAATA---GAAAA---TATGATCGGTAT-CCTTGACC-CAAACAAATCTGTT-GGGAATGAT-AAATAAGTCACACAGT-TTTGAAGTAAA--CAAAACA
gi|13 : AAAC-----TAATATT----ACAC-TTCCA-AATGAA----AA-CT-CGAAAACTTATAA-TTTTCTTTCTAATATAATTATAA-----CAAAGTCTGAAATAGAA-----G---A---TACGATTGACAT-CCTTGACC-CTAACAAATCTGTT-GGGAATGATAAAATAAGTCACAAAGT-TTTGAAGTATA--CAAAATATAGTATTTCttttttctaaacctattt
gi|14 : atgGATGAAAATATAAAC-AA--TAATACT----CTAC-TTCCAGAGTG-T----AT-CT-TTAAAACTATTAA-TACCATTGCAAACATGATCATTA-----CTGAATC--AGACATAATT---G---A---TATTATCGGTAC-TTTAGACC-CAAATAAAGCTGTT-GGAGAAGACAAAATTAGTCACAGAAT-TTTACAGTTTA--CAAAACACtaaacc
gi|15 : aTG-T-----T-CTCTTAAAACAAACAA-TACTCTAACAAATATCAAGATAA-----CTGAA-----AATGAAATTAAGG---A---TATTATAGATAC-ATTAAATC-CCAACAAATCAGTT-CAAGAAGATAAAATCAGTCATAAACT-TTTAAAATTAA--CAAAA-A-ACTGTAT
gi|16 : ctaccaactACT----TTAA-TTCCTGAGTT-T----AA-CT-T-AAAACTAATAA-CAG-TTTAAAAACGTGCACGTTA-----CAGAGAA--AGAC---ATTTTAG---A---TATGATAAATAC-CATAAATCTCAAA-AAAG-TGACTGGCGATGACAAATTAAGTCACAGAATATTTAT--TTTAACCAAAAttctaaaccattggttatgcttt
gi|17 : GATGAAAATATAAAC-AA--TAAAACT----CTAC-TTCCAGAGTG-T----AT-CT-TTAAAACTAATAA-TACCATTGCAAACATGATCATTA-----CTGAATC--AGACATAATT---G---A---TATTATCGGTAC-TTTAGACC-CAAATAAAGCTGTC-GGAGAAGACAAAATTAgttctatttcta
gi|19 : GATGAAAATATAAAC-AA--TAATACT----CTAC-TTCCAGAGTG-T----AT-CT-TTAAAACTAATAA-TACCATTGCAAACATGATCATTA-----CTGAATC--AGACAAAATT---
gi|19 : AGACAAAATTAGTCACAGAAT-TTTACAGTTTA--CAAAACACACTATATCagtcacagaattttacagtttacaaaacacactatatct
gi|2 : gatgaaaatataaacaataatactctacttccagagtgtatctttaaaactaataataccattgcaaacatgatcattactgaatcT----TTAC-TACCAACGTC-TTAAAAT-CT-T-AAAACAAACAAATACTA--ACAAATATCAAGATAA-----CTG---C--AAATGAAATTAAGG---A---TATTATAGATAC-ATTAAATC-CCAACAAATCAATT-GAAGAAGATAAAATCAGTCATACACT-TTTAAAATTAA--CAAt
gi|20 : atcatgagcaaagtTAA-----CTGAGAA--AGAAATAAAC---G---A---TATTATACAAAC-ATTAAATA-CAAATAAAACTGTT-GGAGAGGACATAACAAGCCATACACT-TTTtaagtagtatttctaaaccatcggttatgcttc
gi|21 : taccaaccttcaaactgttttctaataagtcgttcCTGTT-AGGAAAGACAAATTTAGTCACAGACC-TTTACAGTAGT--CTTAACACAGTATATCtaaaa
gi|3 : g-AA--CAATACA----TTAC-TACCAAATTA-T----TT-TC-TTAAAACAAACAA-TACACTAACAAATATTAGGATAA-----CTGA-----AAATGAAATT---A---AGGTTATTATATATAC-ATTAAGTC-AAAGCAAATCAGTT-GGAGAAAATGAAAGCAATCAAAAACT-TTGATAATTAAC-CAAAATAta
gi|4 : tcttgagcaa-AA--CAATACT----TTAC-TACCAACTTG-T-----T-CTCTTAAAACAAACAA-TACTCTAACAAATATCAAGATAA-----CTGAA-----AATGAAATTAAGG---A---TATTATAGATAC-ATTAAATC-TCAACAAATCAGTT-GGAGAAGATAAAATCAATCATAAACT-TTTAAAATTAA--CAAAAtgtatttctacaccattggttctgct
gi|5 : agcaa-AA--CAATACT----TTAC-TATCAACTTG-T-----T-CTCTTAAAACAAACAA-TACTCTAACAAATATCAAGATAA-----CTGAA-----AATGAAATTAAGG---A---TATTATAGATACATTTAGTCC-C-AACAAATCAGTT-GGAGAAGATAAAATCAGTCATAAACT-TTTAAAATTAA--C-AAATA-ACTGTATaaatgtatgtctaaaccattggttatgcttt
gi|6 : gcaaAAACGAA--TATTAC-------AT-TTC-AAAATG-A----AAACT-CGAAAACTAATAA-TTTTCTTTCTAATATTATTATAA-----CTAAGTCTAAAAGAGAA-----G---A---TACGATTAATAT-CCTTGACA-CTAACACATCTGTT-AGGAATGATAAAATAAGTCACAAAGT-TTGA-AGTATA--CAGAATATAGTAttcttaaccactggttatgcttt
gi|7 : agtaatgGATGAAAATATAAAC-AA--TAATACT----CTAC-TTCCAGAGTG-T----AT-CT-TTAAAACTAATAA-TACCATTGCAAACATGATCATTA-----CTGAATC--AGACATAATT---G---A---TATTATCGGTAC-TTTAGACC-CAAATAAAGCTGTC-GGAGAAGACAAAAATAGTCACAGAAT-TTTACAGTTTA--CAAAACACACTATATCattctaaacctcttgta
gi|8 : aGATGAAAATATAAAC-AA--TAATACT----CTAC-TTCCAGAGTG-T----AT-AT-TTAAAACTAATAA-TACCATTGCAAACATGATCATTA-----CTGAATC--AGACATAATT---G---A---CATTACCGGTAC-TTTAGACC-CAAATAAAGCTGTC-GGAGAAGACAAAATTAGTCACATAAT-TTTACAGTTTA--CTAAACACACTATATC
gi|9 : aGATGAAAATATAAAC-AA--TAATACT----CTAC-TTCCAGAGTG-T----AT-CT-TTAAAACTAATAA-TACCATTGCAAACATGATCATTA-----CTGAATC--AGACATAATT---G---A---TATTATTGGTAC-TTTAGACC-CAAAAAAAGCTGTC-GGAGAAGACAAAATTAGTCACAGAAT-TTTACAGTTTA--CTAAACACACTATATC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AGTAATGAAACAAATATAACATTTCCAAATGAAAACTCGAAAACTTATAATTCTTTTTCTAATATTATTATAACAAAGTCTGAAATAGAAGATACGATTGACATCATTTACCCTAAAACATCTGTTGGGGATGATAAAA
Unaligned ( gi|22 ): AAATTAGTCACAAAGTGTAGAAGTATACAAAATATAATATTTCTAAACCTCTAGA