lowQualScore :
lowQualScore :
lowQualScore :
consensus : ATTGAAAATCAGCATCAAACTTTTGTTACAGCCTGTAGAG
Reference ( gi|19 ) : ATTGAAAATCAGCATCAAACTTTTGTTACAGCCTGTAGAG
gi|16 : ATTGAAAATCAGCATTAAACTTTTGTTACAGCCTGTAGA
gi|15 : aaATTAAAAATCAGCATCAAACTTTTGTTACACCCTGTAGAG
gi|14 : ATTGAAAATCATCATCAAACTTTTGTTACATCCTGTAGAGa
gi|27 : aATTGAAAATCAGCATCAAACTCTTGTTACAGCCTGT
gi|25 : aATTAAAAATCGGCACCAAACTTTTGTTACAGCCTGTAG
gi|32 : gACTGAAAATCAGCATCAAACTTTTGTTACAGCC
gi|31 : ACTGAAAATCAGCATCAAACTTTTGTTACAGCC
gi|23 : ATTGAAAATCAGCATCAAACTTTTGTTACAGTC
gi|5 : aATTGAAAATCAGCACCAA-CTTTTGTTACAGACTTTAGAGgctag
gi|12 : atttcaatatgaaATTGAATATCAGCATCAAA-TTTTGTTACATTCTGTAGAGa
gi|2 : aaATTGAAAATCAGCATCAAACTTAAGTTGCAGCCTGa
gi|9 : ttctaattcatctttttcatgaaATTGAAAA-CGGCATTAAACTTTCGTTACAGCCTGc
gi|8 : tcacatttttcatgaATTGAAAA-CGGCATTAAACTTTCGTTACAGCCTG
gi|18 : tcacatttttcatgaATTGAATATCCTCGTCAAACGTTTGTTACAGCCTGTGGA
gi|1 : aACTGAAAATCAGCATCAAAATTGTGTTACAGTCT
gi|7 : atttctaattcatcttttttttttataaaATTGAAAATCAGCATCTAACTTTTGTT
gi|11 : tttctaattcgtcctttttatgaaATTGAAAATCAGCATCATACTTTAGT
gi|10 : tctaattcgcacttttatgaaATTGAAAATCAGCATCATACTTTAGT
gi|20 : tctaattcgcacttttatgaaTTAAAAATCAGCATCAAACTTTTGTTACAACCTGTAGA
gi|24 : tTTGAAAATCAGCATCAAACTTTTGTTGCATCCTATAGAG
gi|17 : TTAAAAATCAGCACTAAACTTTTGTTACATCCTGTCGAG
gi|28 : cTGAAAATTAGCATCAAACTTTTGTTACATCCTGTAGA
gi|35 : TGAAAATCAGCATCAAACTTTTGTTACAGC
gi|33 : TGAAAATCAGCACCAAACTTTTGTCACAGCCTt
gi|13 : TGACAATCAGCATCAAA-TTTTGTTACAGCCTAGAGAG
gi|4 : aaaaTGACAATCAGCATCAAA-TTTTGTTACAGCC--TAGAGa
gi|3 : ccatttcgtctttgaaaaTGAAAATCAGCATCAAACTTTTGATACGGCa
gi|22 : cttattcgtctttttaataaAAAATCAGCATCAAACTTTTGTTACAGTCTATagttgaaga
gi|29 : aaattaaAAAATCAGCACCAAAC-TTTATTACATCCTGTAGAG
gi|26 : AAATTTAAAATCAAACTTTTGTTACATCCTGTAGAGat
gi|21 : AAATCAGCGTCAAACTTTTGTTACCGTCTGTAGAGat
gi|30 : ATCAGCATCAAACTTTTGTTACATCCTGTAGAGagtc
gi|34 : CAGCATCAAACTTTTGTCACAGCCTGTAGAGat
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): TTCTAATTTGTCTTTTTTATGAAGTTGAAAGTCACCATCAAACTTAAGTTAG
Alignments
lowQualScore :
lowQualScore :
lowQualScore :
consensus : ATTGAAAATCAGCATCAAACTTTTGTTACAGCCTGTAGAG
Reference ( family-1151 ) : ATTGAAAATCAGCATCAAACTTTTGTTACAGCCTGTAGAG
gi|1 : ACTGAAAATCAGCATCAAAATTGTGTTACAGTCT
gi|10 : atttctaattcatcttttttttttataaaATTGAAAATCAGCATCATACTTTAGT
gi|11 : tctaattcgcacttttatgaaATTGAAAATCAGCATCATACTTTAGT
gi|12 : tctaattcgcacttttatgaaATTGAATATCAGCATCAAA-TTTTGTTACATTCTGTAGAG
gi|13 : aaTGACAATCAGCATCAAA-TTTTGTTACAGCCTAGAGAGa
gi|14 : aaaaATTGAAAATCATCATCAAACTTTTGTTACATCCTGTAGAGa
gi|15 : aATTAAAAATCAGCATCAAACTTTTGTTACACCCTGTAGAG
gi|16 : ATTGAAAATCAGCATTAAACTTTTGTTACAGCCTGTAGAa
gi|17 : aaTTAAAAATCAGCACTAAACTTTTGTTACATCCTGTCGAG
gi|18 : cATTGAATATCCTCGTCAAACGTTTGTTACAGCCTGTGGA
gi|19 : aATTGAAAATCAGCATCAAACTTTTGTTACAGCCTGTAGAG
gi|2 : ATTGAAAATCAGCATCAAACTTAAGTTGCAGCCTG
gi|20 : ttctaattcatctttttcatgaaTTAAAAATCAGCATCAAACTTTTGTTACAACCTGTAGAc
gi|21 : tAAATCAGCGTCAAACTTTTGTTACCGTCTGTAGAG
gi|22 : AAAATCAGCATCAAACTTTTGTTACAGTCTATagtc
gi|23 : aaattaaATTGAAAATCAGCATCAAACTTTTGTTACAGTC
gi|24 : aTTGAAAATCAGCATCAAACTTTTGTTGCATCCTATAGAGgctag
gi|25 : ATTAAAAATCGGCACCAAACTTTTGTTACAGCCTGTAG
gi|26 : gAAATTTAAAATCAAACTTTTGTTACATCCTGTAGAG
gi|27 : ATTGAAAATCAGCATCAAACTCTTGTTACAGCCTGTat
gi|28 : aTGAAAATTAGCATCAAACTTTTGTTACATCCTGTAGA
gi|29 : AAAATCAGCACCAAAC-TTTATTACATCCTGTAGAG
gi|3 : TGAAAATCAGCATCAAACTTTTGATACGGCat
gi|30 : cttattcgtctttttaataaATCAGCATCAAACTTTTGTTACATCCTGTAGAGagttgaaga
gi|31 : ACTGAAAATCAGCATCAAACTTTTGTTACAGCCat
gi|32 : ACTGAAAATCAGCATCAAACTTTTGTTACAGCC
gi|33 : TGAAAATCAGCACCAAACTTTTGTCACAGCCT
gi|34 : CAGCATCAAACTTTTGTCACAGCCTGTAGAG
gi|35 : TGAAAATCAGCATCAAACTTTTGTTACAGCa
gi|4 : TGACAATCAGCATCAAA-TTTTGTTACAGCC--TAGAGt
gi|5 : ccatttcgtctttgaaaaATTGAAAATCAGCACCAA-CTTTTGTTACAGACTTTAGAGa
gi|7 : atttcaatatgaaATTGAAAATCAGCATCTAACTTTTGTTa
gi|8 : tttctaattcgtcctttttatgaaATTGAAAA-CGGCATTAAACTTTCGTTACAGCCTG
gi|9 : tcacatttttcatgaATTGAAAA-CGGCATTAAACTTTCGTTACAGCCTG
blockSeqCons :
originalCons : ATTGAAAATCAGCATCAAACTTTTGTTACAGCCTGTAGAG
finalCons : ATTGAAAATCAGCATCAAACTTTTGTTACAGCCTGTAGAG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TTCTAATTTGTCTTTTTTATGAAGTTGAAAGTCACCATCAAACTTAAGTTAG
Alignments
lowQualScore :
lowQualScore :
lowQualScore :
consensus : ATTGAAAATCAGCATCAAACTTTTGTTACAGCCTGTAGAG
Reference ( family-1151 ) : ATTGAAAATCAGCATCAAACTTTTGTTACAGCCTGTAGAG
gi|1 : ACTGAAAATCAGCATCAAAATTGTGTTACAGTCT
gi|10 : atttctaattcatcttttttttttataaaATTGAAAATCAGCATCATACTTTAGT
gi|11 : tctaattcgcacttttatgaaATTGAAAATCAGCATCATACTTTAGT
gi|12 : tctaattcgcacttttatgaaATTGAATATCAGCATCAAA-TTTTGTTACATTCTGTAGAG
gi|13 : aaTGACAATCAGCATCAAA-TTTTGTTACAGCCTAGAGAGa
gi|14 : aaaaATTGAAAATCATCATCAAACTTTTGTTACATCCTGTAGAGa
gi|15 : aATTAAAAATCAGCATCAAACTTTTGTTACACCCTGTAGAG
gi|16 : ATTGAAAATCAGCATTAAACTTTTGTTACAGCCTGTAGAa
gi|17 : aaTTAAAAATCAGCACTAAACTTTTGTTACATCCTGTCGAG
gi|18 : cATTGAATATCCTCGTCAAACGTTTGTTACAGCCTGTGGA
gi|19 : aATTGAAAATCAGCATCAAACTTTTGTTACAGCCTGTAGAG
gi|2 : ATTGAAAATCAGCATCAAACTTAAGTTGCAGCCTG
gi|20 : ttctaattcatctttttcatgaaTTAAAAATCAGCATCAAACTTTTGTTACAACCTGTAGAc
gi|21 : tAAATCAGCGTCAAACTTTTGTTACCGTCTGTAGAG
gi|22 : AAAATCAGCATCAAACTTTTGTTACAGTCTATagtc
gi|23 : aaattaaATTGAAAATCAGCATCAAACTTTTGTTACAGTC
gi|24 : aTTGAAAATCAGCATCAAACTTTTGTTGCATCCTATAGAGgctag
gi|25 : ATTAAAAATCGGCACCAAACTTTTGTTACAGCCTGTAG
gi|26 : gAAATTTAAAATCAAACTTTTGTTACATCCTGTAGAG
gi|27 : ATTGAAAATCAGCATCAAACTCTTGTTACAGCCTGTat
gi|28 : aTGAAAATTAGCATCAAACTTTTGTTACATCCTGTAGA
gi|29 : AAAATCAGCACCAAAC-TTTATTACATCCTGTAGAG
gi|3 : TGAAAATCAGCATCAAACTTTTGATACGGCat
gi|30 : cttattcgtctttttaataaATCAGCATCAAACTTTTGTTACATCCTGTAGAGagttgaaga
gi|31 : ACTGAAAATCAGCATCAAACTTTTGTTACAGCCat
gi|32 : ACTGAAAATCAGCATCAAACTTTTGTTACAGCC
gi|33 : TGAAAATCAGCACCAAACTTTTGTCACAGCCT
gi|34 : CAGCATCAAACTTTTGTCACAGCCTGTAGAG
gi|35 : TGAAAATCAGCATCAAACTTTTGTTACAGCa
gi|4 : TGACAATCAGCATCAAA-TTTTGTTACAGCC--TAGAGt
gi|5 : ccatttcgtctttgaaaaATTGAAAATCAGCACCAA-CTTTTGTTACAGACTTTAGAGa
gi|7 : atttcaatatgaaATTGAAAATCAGCATCTAACTTTTGTTa
gi|8 : tttctaattcgtcctttttatgaaATTGAAAA-CGGCATTAAACTTTCGTTACAGCCTG
gi|9 : tcacatttttcatgaATTGAAAA-CGGCATTAAACTTTCGTTACAGCCTG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TTCTAATTTGTCTTTTTTATGAAGTTGAAAGTCACCATCAAACTTAAGTTAG