lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222222222222 33333333333333 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1 1 4444444 1111111 11111 22222 1111 4444444444444444 1 111111 66666666666666666666666666 11111 33333333333333333333333333333 22222222222 222222222222222222222 1 33 1111 1 44444444 1 222222222222222 88888888888888888888888888888888
lowQualScore : 11 777777777777 0 7 99999999999999 5 3 5 7 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2 0 777 55 7777777 3333333 777 4 55 4 2 55 99999 4 55555 66666 2 99 2 6 0000 3 2222222222222222 5 111111 1 88888 22222222222222222222222222 00000 4 3 22222222222222222222222222222 2 55555555555 3 3 7 1 222222222222222222222 3 6 3 99999999999 1 3 44 6 44 3 8888 7 1 2 2 11111111 33 77777 44 0 6 4 44 555 3 44 888888888888888 3 5 6 3 444 3 5 5 2 2 3 3 4 8 66666666666666666666666666666666 6
lowQualScore : .. ............ . . .............. . . . . ....................................................................................................... . . ... .. ....... ....... ... . .. . . .. ..... . ..... ..... . .. . . .... . ................ . ...... . ..... .......................... ..... . . ............................. . ........... . . . . ..................... . . . ........... . . .. . .. . .... . . . . ........ .. ..... .. . . . .. ... . .. ............... . . . . ... . . . . . . . . . ................................ .
lowQualScore : 33 000000000000 8 8 22222222222222 7 7 0 1 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 5 0 000 55 5555555 5555555 000 4 55 0 8 55 44444 0 55555 77777 2 99 3 9 7777 8 6666666666666666 4 555555 4 33333 66666666666666666666666666 00000 0 6 77777777777777777777777777777 8 44444444444 3 3 5 0 777777777777777777777 1 8 5 77777777777 0 3 88 7 66 3 2222 2 6 1 4 33333333 88 99999 66 5 4 0 22 444 1 22 000000000000000 1 0 8 8 444 1 3 7 9 9 4 3 5 8 22222222222222222222222222222222 0
consensus : TTAATATAT--A-NATA-TA-TGTACACTCAACTCCAAAANNAA-CNTTAC-ACTTTT-TATTTCACTTGTA-----------NGT---------C----A----------------------TT-------------------AAT--------T-----------TT------TACACATAACAAGA---T--CA-TTTC--ATTT--T-AA-TAA---AATGTC--A-AAA--TAT----AACA-AA-----AGTTCATT-TAT-AGCGTTTTGACNTATTTGATCTTAAAAGTGACT---ACCCAATNACTCCATTT--TCACAGT-CAATATCGCGTGTGGCCAC------CGCGGGC----TGCT---AT-----------N---------CATTG-----CA-CGCATC-GT--------------CACTCAGCCTA-CCCATCTGTTAGTTGTTG----C-T-GGT-T-AACTTGTCTTGTGAT--T---TT---T---A-TACTGAACATGTGTTGTAACCATG----A------GTGCAACAT-TTTTT-CACG--TG-CAATTCATGATAGGCCGAGAGCGGGCGAATCGTATGTTTCGCAATATTCGT-----GCGT-TGCGTGCGTGCACG----GACACACAATC--CCAATTAAATGGTGGCAATGGATACCCAGTT--GATAATTCAGCATA---AAT-A--T-A--TT--TTT----A-TGAAATTGGATATGCAATGTAACAGATATTTAG---GAAACAA-AAC-TG-TAAGGTTTCTTTT-GGAGTTGAGTGTAG--AGNTCCCTGTNCATTTCAAAATATTAA-GTATGTATTT
Reference ( gi|3 ) : TTAACGTAT--A-CATA-TAATGTACGCTCAACTCCTCAACTAA-CCTTAC-ACCTTT-TATCTCACTTGTA-----------AAT---------C----A----------------------TT-------------------AAT--------T-----------TG------TACCCATAAGAAAA---T--CA-TGTCT-ATTT--T-GA-TAA---AATGCC--A-AGA--TAT----AACA-AA-----AGTTCATT-GAA-AGCATTTCGACTTATTTGATCTTAAAAATGACT---ACCCAATTACTCCATTT--TTACA-T-CAGTATCGCTTGTGGCCAC------CGCGGGT----TGCT---AT-----------C---------CATTA-----CA-CGCATC-GT--------------CACTCAATCTG-CTAATCTGTTAGTTGTTT----C-T-G-T-T-AACTTTTCTAGTGAT--T---TT---T---A-TACTGAACATGTGTTGTTACTATG----A------GTGCAACAT-TTGGT-CACG--TG-CCATACATAATAGGTCGAGAGCGGGCGAATAGTATGTTTCGCAATATTTG------GCGT-TGCGTGCGTGCACG----GACACACAATC--CCAATTAAATGGTGACAATGGATACACAGAT--GATAATTCAGCATA---AAT-A--T-A--TT--TTT----A-TGAAATTGGATATGCAATGTAACAAATGTTTAG---GAAACAA-AAC-TG-TAAGGTTTCTTTT-GGAATCGAATGGAG-GAGGTT--TGAACATTT----ATATTCATTTATGTGTTTGT
gi|6 : TTAACACGTTGA-AATA-TA-TGTACACTGAACTCAAAAAATA--CGTTAC-ACTTTT-TATTTCACTTGTA-----------TGT---------T----A----------------------TTTATAAGGGGAAATAAATGAAAT--------T-----------TT------CATACATAACAAGA---T--CA--ATTC-ACTT--T-AAATAA---ATTGTC--A-AAA--CAG----AACA-AA-----AGTTTGTT-TTT-AGCGTTTTGACATATTTGATCTTAAATGAGAC----AACCAATT------------------------CCGCATGTTGCCGC------CGCGTGC----TGCT---ATGCATTGCACATCTTG------CATTG-----CA-CGTATT-GT--------------AACTAAGCCTG-CATATCTGTAAGTTTTTG----C-T-GGT-T-AACTTGTTTTGTGAT--T---TT---TTTTA-TACTGAACATGTGCGGTAACCATG----A------TTGCAA-AT-TT----------------TTCATAAC---------GCGTGCGAATCGTATATTTTGATATATTCGT-----GCGT-TACGTTCGTGCATG----GACATACAATT--TCAATTAAATGCTGGCAATGAGTACACAGTT--GACAATTCAGCATA---AAT-A--T-A--TT--TTTG---A-TGAAATTGGAAATGCAATGTAAAATATATCT------AAACAT-AAC-TG-TACGGTTTCTCTT-GAAATTGAGTG
gi|2 : gctatTTAATATAT--AACTTA-TA---TACACTCAATTAC-AAACGAAACCTTAC-ACTTGT-TATTTCACTGGTA-----------TGT---------CAGAGA----------------------TT-------------------AAT--------tatatatatacaaatatgtgt
gi|8 : taATGTAT--A-TATACTAATGC-----CAAA----CAA--AA-ATTTAT-ACCTTT-TTTGCCACTTGTA-----------TGT---------CCGAAA----------------------CT-------------------AAT--------CAAGGGAAACAATGAAGATTTACATATAACAAAA---T--CA-------ATTTAAT-GA-CAATTAAATGTA--A-AAA--CAT----AAGA-AA-----AGTGCATT-CAT-AGCATTT--ATATATTTGATCTTAAAAGTGACT---ACCCAGTAACTCCATTT--TCATAGT-CAGTATCGCGTGTCGCCAC------CGCTGAC----CGCT---AT-----------G---------CATTG-----CA-C---TT-GT--------------CA----ACCC-----ATCTGTTAGTTGTTG----C-T-GAT-T-AACTTGTCTTGTGAT--TG--TT---T---AATACTTAACAAGGGTAGTAACCAGG----A------GTGCAACAT-TTT-T-CACC--TG-CGATTCATGATAAGCTAATAGCGGGCGAATCGTATATTTCGCAATATATAT-----GCAG-AGCGTATATGCACG----GACACACAATC--CCACTTAAATGATAGCAATTGATACTCAATT--GATAATCCAGCATA---AAT-A--G-C--GT--TTA----A-TGAACTTaaagggaaattaatggattttacacagaacaggatcatatcttgaaagtgactgcaactcaataactccattttcacagtcaatatcgcgtgtgaccacttcgggctgctatgcattgtacccattgtattgcacgcatcgtcactcagcctacccaactgttatttgttgctggtcaacgtgtcttgtgattgtttttatactgaacaagtgctgaaatcatgagtgcaacattttttcacgtgcagtgcatgagaagctgagggtgggcgaatggtatgtttcgcaatagtcgtgcattgcgtgcgtgacaaacatttactgaacgggttagttgttccgttcagtttacaatcagtttataatcatccaattaaatagcaataatggatacacagttgtttaatcagcatatacaattatattgtggaattgaatatgcaatatatcagatatttaagaaacaaaactgtaaggctacttttggagttgacgaatacgatacattgt
gi|4 : gtcgtgttgcagatatatTACACTCGATTCCAAAAAGAAACCTTACCACTTAT-TATTTCACGTGTATGCCAGA----AATGAAAGGAAAC----A----------------------TG-------------------ACT--------TCT---------TT------TACACAAAACAAGA---T--CA-TTT----TGT--T-GA-TAA---AATCTC--A-AAA--TTT----AACA-AA-----AGTTCATT-AAT-AGCGTTTTAACT-------------------------CCTGATAACTCAATTT--TGACAGT-CAGTGTCGCGTGTGGCCAC------TATGCATGACACACA---AT-----------G---------AACTG-----CA-TGCATC-GT--------------TACTCAGCCTA-CCGATCTGTTTGTTACCTAGTGC-T-GGT-T-TATTTGTCT--TGGT--T---TTCTTT---A-TACTGAACATGTGTTGTAACCATG----A------GTGCAACATGTTTTT-CACG--TG-CAATTCATGATTGGCCGAGAGCAGGCGAATCTTATATTTCGCAATAT---------AC-T-AGTATGTGTGCACA----GACACACAATC--C---------AGT--CCATGTATACG--------------CAGCATA---AAT-A--T-A--TC--TTTTTGAA-TGAAATTGGATATGCAATGTTACTTATATTCAG---GAAACAC-AAC-TG-TCAGCTTTCTTTT-AGAGTTGAGTGcaagttgtttctgtcggagttgaggagttgagtgta
gi|15 : aatacttattaaaatacatacttaatattttgaaatgacaggaatctggcTACACTCAACACCG-AATAAA-CGTTAC-ACTTTT-TTTTTTACTTGTATGACAGAGGTTAAT---------A----AAGATAAA---------------TA-------------------AAT--------TA----------TT------TACACATAACACGA---T--CT-TTTC--ATTT--T-GAATAA---AATGCC--A-AAT--CAT----AACA-AA-----AGTTAATT-TAT-AGCATTTTGACTTTTTTGATCTCAAAAGTTACT---ACCCAATTACTCCAATG--TCAAAGT-CAATATCGCAAGGGGCCAC------CACAGGC----TACT---GT-----------tatgtatgcccagttgaa
gi|7 : CTAAACTCCAAAAGAAA-CTTTAC-ACTTTT-TATTTCACTTGTA-----------TGT---------C----AGAGATTGATAAAAGGAAATAAATC-------------------AGT--------T-----------TT------TACACATAAGATAA---TTTCA-T------TTT--T-AA-TAA---AATGTC--G-AAACTTATCGTGAACACAACT---AGATCATTTGTATAGCTTTTTTATTTATTTGATCTTAAAGGTGACT---ACCCAATAACTGCATTT--TCACAGT-CAATATTGCGCGTGCCCAC------CATGGGC----TGTT---GT-----------G---------TATTA-----CA-CGCATT-GTATTGCATGCATTTTCACCCAGCCTA-CCCATCTGTAAGTTGTTG----CAT-G-T-T-AACTTTT-----------------------A-TACTGAACAT---TTA--ACCATG----A------GTGCAACAT-TTTTT-CACA--TG-CAATTCATTATGGATCGAGCGCGGGCGAATCCTATGTTTCACAATAATCAT-----GCAT-TGCGTGGGTGCAC------------AATC--CCATTTAAATGTTGGCAATGGATACACAGTT--TATAATTCAGTATA---AAT-A--T-AGTTT--TTT----AATGACATTAGATATGCAATGTAACAGATATTTAG---AAAA-AA-AAC-T---AAGGTTTCTTTT-GGAGTTGA
gi|5 : tacataCATCTAA-C-TTAC-ACTTTT-TATTTCACTTGTA-----------
gi|10 : aatacacataaaaaagtacatgtttaagattcaagatctcacaacgtgcatggcacatctgattgaagtaTTTATATTTCGCTTGTA-----------AGT---------C----AGAGA------------------TT-------------------AATGAAGGTATT-----------TT------TACGCATAACAAGA---T--CA-T--CTGATTTC-T-AA-TAA---AATGTCGAA-AGA--TAT------CA-AA-----AAATCATT-AAA-AG-ATTTTTGCTCATTTGATCTTAAAAGTGACT---ACCCAGTGACTCTAT---------------TATCGCGAGTGACTATGCATTGCACGTAT----TGCT---GA-----------C---------ATTTA-----CA-CGCATtgttagcaactaataaaataaggcatacaattgatttttacatacaacagattttcccgctgacccttctctcgaggtcatgcacagtcatgtataaacaccggaaatgcagaataaccgctttcactgtcatgtcagcgcgccgactcaatctacttccgatcattgatcgtctcagcctatccatctgtaacttgttgctgtgtaacttgtctagtgttgtttttatcggacatgtgttgtaaccatgcgtgcaatatttgttcacggaaaagtcatgatataccgaaagtggtcgaattatatgtatggcaatattcgtgcgatgcgtgcttgcacggacacatactcccaattaaatatgacaatggacgcccagttgacactttatcataattatatgcagtcactgtgtaacaaatactaaggaaacaaactgtaaggtttcttttcgagtggagtgtacgctacagatgaaa
gi|9 : ccagacaacaatcgcagcatttttGCA-----------AATA--------C----A----------------------TG-------------------ATT--------T-----------TT------TACACATAACAAAA---T--CA-TTTC--GTTT--T-TA-TTA---AATATC--A-AAA--TAA----AACA-AA-----TGTTAATT-TAT-AGCGTTTTGACATAATTGAATTTAAAAGTA------ACCTAGTTACTTCATTT--TCACA-TCCAATATCGCGTGTGG--AC--------TAGAT----TACC----T-----------C---------TCTCA-----CA-TCC--C-AA--------------CATTGATTGTGTTTCATCTTTTAGTTGTTG----C-TGG-T-T-AACTACTCTTATGATTGT---TT---T---A-TACTGAACATTTGATGTAACCATG----A------ATGCAACAT-TT-TT-CACG--TG-CAATTCAT----GGTCAGTAGCGAGCGAgaaataaaccaccgctctgactttattctgtgagaaagcgtgttattcttgtgtcaaatctactcatctgttgcttgttaattcttcttgtaatttttaaactgaacatgtgttgtaactatgagtcactgtggaacattttttacgtgcaattcatgataggcgaacggggaatcgtataagtaacaatattcatgcgttgtgtgtgtgaatgggcacacagtcccaagtaaaag
gi|17 : tatctatttaaacatcgccatttgttgtatagagtcaattcgtaaatattcactttatatatttcacttgtatgacagagattaatcaag----A----------------------TT-------------------AAT--------T-----------T-------TACACATAATAAGA---T--CA-T-TTT-ATTT--TTAA-TAA---AATGTC--A-AAA--TAT----AACA-AA-----ATTTTATT-cttaaaatatataataaatataaaataaatagtggcaatgaatacccaatttgataaatcagcatagatataattgttcaattaaattagttacgcaatgtaacaactattttgaaaataaaa
gi|14 : aaaagatatttaactcatgcatacactcatctctaaaaggaactttacactttttatttgactcggatggccgatattaataaagggaaatatattgattttacacatat------TACACATAACAAGA---T---A-GATTC-ATTT--TTAA-TAA---AATGTC--A-AAA--CAT----AACA-AA-----GGTGCATT-TAT-AGCGTTTTGACTTATTTGATCTTAAAAGTGAAC---ACCAGACTACTCCATTTGCTTA-G-T-TAATATCGCGTATGCCCGC------CGCGGGC----TGCT---ATG----------CATTGCATTGCATTG-----CA-TGCATC-GT--------------CACTTAGTATA-CCCGTCTGCTAGTTGTTG----C-T-GAT-T-AACTTGTCTTGTGAT--T---TT---TTG-A-TACTGAACATGTGTTGTtata
gi|1 : tcagagattaataaagggaaataaatgaacattCCAAAAGAAACCTTT--CACTTTTT-ATTT--C-AC-TCT---AACGTC--AGAGA--TA-----AATA-AATGGAAAGTTCATT-TAT-AGCGTTTTGACGTATTTGATCTTAAAAGTGATC---GTCCAAATACTCCA---------------ATATCACGTGTGGCCAC------CGCGGGC----AGAT---TT-----------A---------CATTG-----CA-CGCATC-GT--------------CACTGAGCCTA-CCCATCTGCTAGTTGTTG----C-T-GGT-T-AATTTCTTTTGCGAC--T---TT---TGTCA-TACTAAACATGTGTTGTAATCATG----A------GTGCAAATT-TTTTT-CACG--TG-CAATTTATGATAGGTCGAGAGCGGGCGAATCGTATGATTTGCAATTCTTGC-----GTGT-TGCGTGCGCGTACG----TACACACAATC--CCAATTAAATGGTGACAGTGGTTATCCAGTT--GATAATTCATCATA---ACT-A--T-A--TTG-TTTTA--A-TGAAATTGGATATACAATGTAACATATATTAAG---GAAACAA-TAC-CG-TAAGGTATCTTTT-GGAGTTGAGTG
gi|2 : gtagtccatttatatagacacttatttcataagggaagatggtgaagtttttcatacactATCTTGAAAGTGACTGCAACTCAATAACTCCATTT--TCACAGT-CAATATCGCGTGTGACCAC------TTCGGGC----TGCT---ATGCATTGTAC--C---------CATTGTATTGCA-CGCATC-GT--------------CACTCAGCCTA-CCCAACTGTTATTTGTTG----C-T-GGT-C-AACGTGTCTTGTGAT--TGTTTT---T---A-TACTGAACAAGTGCTGAAATCATG----A------GTGCAACAT-TTTTT-CACG--TG-CAGTGCATGAGAAGCTGAGGGTGGGCGAATGGTATGTTTCGCAATAGTCGT-----GCAT-TGCGTGCGTG-ACA----AACAtattaaagaaatattgtatgataattttctctactactagttgattgttattgtgtgcagcggattgcaataacgttaaatatatcagttat
gi|11 : tattaatatataacttatatacactcaattacaaacgaaaccttacacttgttatttcactggtatgtcagagattaataaagggaaattaatggattttacacagaacaggatcatGGT----TGTTTTAAT-----------A---------CATGA-----CAACGCACCCGG--------------CAC-----CTG--TG--CTGC-AATTGTTG----C-T-GAT-T-AACTTGTCTTGTGATATTG--TT---T---A-TATTGAACATGTGTTGCAACTATGTTTTA-------TGT----T-TTAAT-CACGATTAATCA-ATATAA--GGCCGAGAGCGAGCGAAAAGTATGTCTCGCAATATCCGTGCGGTGCGT--GCGTGCGTGCACG----GACACATAATC--CCAATTAAATGCTGGTAATGGATACCCAGTA--AATAATGCTGCATA---AAT-A--TCA--TTCATTTG---A-TAGAAATGGATATACAATGTAACAGATATTAAG---GAAAAAA-CAC-TG-TAAGGTATCTTTT-GGAGTTTAATATA-----CTC--TATACATTT----ATATtttactgaacgggttagttgttccgttcagtttacaatcagtttataatcatccaattaaatagcaataatggatacacagttgtttaatcagcatatacaattatattgtggaattgaatatgcaatatatcagatatttaagaaacaaaactgtaaggctacttttggagttgacgaatacgatacattgt
gi|5 : ATC-GT--------------C--TCAGCCTA-TCCATCTGTAACTTGTTG----C-T-G-TGT-AACTTGTCTAGTGTT--G---TT---T---T-TATCGGACATGTGTTGTAACCATG----C------GTGCAATAT-TTGTT-CACG--GA-AAAGTCATGATATACCGAAAGTGGTCGAATTATATGTATGGCAATATTCGT-----GCGA-TGCGTGCTTGCACG----GACACATACTC--CCAATTAAAT-ATGACAATGGACGCCCAGTT--GACACTTTATCATA---A------------T--TAT----A-TGCAGTC--AC-TG---TGTAACAAATACTAAG---GAAAC-A-AAC-TG-TAAGGTTTCTTT------TCGAGTGGAG-caatcagtaccatatcttgtatcagttcagcagatgttatacttggcttcactagtgta
gi|10 : aatacacataaaaaagtacatgtttaagattcaagatctcacaacgtgcatggcacatctgattgaagtacatctaacttacactttttatttcacttgtatgttagcaactaataaaataaggcatacaattgatttttacatacaacagattttcccgctgacccttctctcgaggtcatgcacagtcatgtataaacaccggaaatgcagaataaccgctttcactgtcatgtcagcgcgccgactcaatctacttccgatcattg-GT--------------CA---AATCTA-CTCATCTGTT----GCTT--------G-T-T-AATTCTTCTTGTAAT--T---TT---T---A-AACTGAACATGTGTTGTAACTATG----AGTCACTGTGGAACAT-TT-TT-TACG--TG-CAATTCATGATAGGC---GAACGGG-GAATCGTATAAGTAACAATATTCAT-----GCGT-TGTGTGTGTGAATG----GGCACACAGTC--CCAAGTAAAtgtacgctacagatgaaa
gi|12 : ccagacaacaatcgcagcattttttttatatttcgcttgtaagtcagagattaatgaaggtatttttacgcataacaagatcatctgatttctaataaaatgtcgaaagatatcaaaaaatcattaaaagatttttgctcatttgatcttaaaagtgactacccagtgactctattatcgcgagtgactatgcattgcacgtattgctgacatttacacgcatgaaataaaccaccgctctgactttattctgtgagaaagcgtgttattcttgtCTA-CTCGTCAGTCACTTGTTA----C-T-G-C-TGAACTTTT-TA--------------------A-TACTGAAAATGTGTTTTAACCATG----A------GTGCAACGT-TTTTTTCGCT--TG-CAATTCATGGTAGACCAAGAGTGTGCAAAGCGTATGTTTCGCAATATTCAT-----GCAT-TTCATGAATGCACA----GACACACAATC--CCAATTAAATGGTGACAATGGATACCCAGTT--GATAATTCAGCATA---CAT-A--TAA--TT--TTTTA--A-TGAAATTTGATATGCATTGTAAAAGATTAATAG---GAAACAA-AAC-TG-TAAGGTTTCTTTT-CAAGTTGAGTGCAG-Gag
gi|13 : ttgc---TT---T---A-TACTGAACCTGTTTTGTAACCATG----A------GTGCAATAT-TTTTTTCACG--TG-CAATTTATGATAGGTCGGAAACAGGCGAGTCGTATGTTTCGAAATATCCGT-----GTGT-AGCGTGCGTGCACG----TACACACAATA--ATAGTTAAA-GGTGACACTCGATAGCCAGGT--AATAATTCAGCATA---AAT-A--T-A-------------A-TTAA---GGA----------AACAAATA--------------------TG-TAAGGTTTCTTCT-GGAGTTCAGTGttcaatgaaagaataacatcacaaatatttaataaaaaataaatttgatttttcagtt
gi|16 : tttgCATGATAGACCGAGAGCAGGTGAATCGCATGTTTCGCAGCATTCGT-----GCGT-TGTGTGTGTGCACGCACGGACACGCAATC--CCAATTAAATGGTGGCAGTAGATACACAGTT--GATAATTCAG-------AAT-A--T-T--TT--TTT----tattatctaggtatatcttcacttagttttgttaaaaaacgttaaatattacgacagtta
gi|16 : tcttaaaccgaaacacgatctatgtgtaacttgctatcggacaataaatcactcaaaattagtttaatacgacattat------GCGTGTCCGTGCGTGCAC------ACACACAAttttttatgaa
gi|2 : tcttaaaccgaaacacgatctatgtgtaacttgctatcggacaataaatcactcaaaattagtttaatacgacattatcatgatagaccgagagcaggtgaatcgcatgtttcgcagcattcgtgcgATAATCATCCAATTAAATAGCAATAATGGATACACAGTT--GTTTAATCAGCATATACAATTA--T-A--TT---------G-TGGAATTGAATATGCAATATATCAGATATTTAA---GAAACAA-AAC-TG-TAAGGCTACTTTT-GGAGTTGAaatcccaattaaatggtggcagtagatacacagttgataattcagaatatttttttttttttatgaa
gi|9 : tattaatatataacttatatacactcaattacaaacgaaaccttacacttgttatttcactggtatgtcagagattaataaagggaaattaatggattttacacagaacaggatcatatcttgaaagtgactgcaactcaataactccattttcacagtcaatatcgcgtgtgaccacttcgggctgctatgcattgtacccattgtattgcacgcatcgtcactcagcctacccaactgttatttgttgctggtcaacgtgtcttgtgattgtttttatactgaacaagtgctgaaatcatgagtgcaacattttttcacgtgcagtgcatgagaagctgagggtgggcgaatggtatgtttcgcaatagtcgtgcattgcgtgcgtgacaaacatttactgaacgggttagttgttccgttcagtttacaatcagtttAAATAAATAGTGGCAATGAATACCCA-ATTTGATAAATCAGCATA---GAT-A--T-AA-TT--GTTCA--A-TTAAATTAGTTACGCAATGTAACAACTATTTTG---AAAATAA-AAcgaatacgatacattgt
gi|19 : tatctatttaaacatcgccatttgttgtatagagtcaattcgtaaatattcactttatatatttcacttgtatgacagagattaatcaaggcaaatacatgattttttacacataacaaaatcatttcgtttttattaaatatcaaaataaaacaaatgttaatttatagcgttttgacataattgaatttaaaagtaacctagttacttcattttcacatccaatatcgcgtgtggactagattacctctctcacatcccaacattgattgtgtttcatcttttagttgttgctggttaactactcttatgattgttttatactgaacatttgatgtaaccatgaatgcaacatttttcacgtgcaattcatggtcagtagcgagcgacttaaaatatataataaatataCAGTT--GATAATTCAGCATA---AAT-AAAT-G--TT--GTT----A-TGATATTGGATATGCAATGTAGCCGATATTTAG---GA
gi|18 : cT--TTA----A-TGCAATTGAATATGAAATGTAAGAGATATT-AA---GAAATAA-AAC-TG-TTAGGTTTCTTTC-TGAGTTTAGTG
gi|1 : TTAGAGTGAAATAA-AAAGTG-AAAGGTTTCTTTT-GGAGTtatattaacagtatacaggtagatttgttctactattgttta
gi|7 : gtagtccatttatatagacacttatttcataagggaagatggtgaagtttttcatac---GAAATAA-AAAGTG-TAAAGTTTCTTTT-GGAGTcgtcagagataaataaatggaaagttcatttatagcgttttgacgtatttgatcttaaaagtgatcgtccaaatactccaatatcacgtgtggccaccgcgggcagatttacattgcacgcatcgtcactgagcctacccatctgctagttgttgctggttaatttcttttgcgacttttgtcatactaaacatgtgttgtaatcatgagtgcaaatttttttcacgtgcaatttatgataggtcgagagcgggcgaatcgtatgatttgcaattcttgcgtgttgcgtgcgcgtacgtacacacaatcccaattaaatggtgacagtggttatccagttgataattcatcataactatattgttttaatgaaattggatatacaatgtaacatatattaaggaaacaataccgtaaggtatcttttggagttgagtgtattaaagaaatattgtatgataattttctctactactagttgattgttattgtgtgcagcggattgcaataacgttaaatatatcagttat
gi|4 : tacatactaa---GAAATAATAAG-TGGTAAGGTTTCTTTTTGGAATCGAGTGTAGCCAGATTCCTG-TCATTTCAAAATATTAA-GTATGTATTTacttgtatgtcagagattgataaaaggaaataaatcagtttttacacataagataatttcatttttaataaaatgtcgaaacttatcgtgaacacaactagatcatttgtatagcttttttatttatttgatcttaaaggtgactacccaataactgcattttcacagtcaatattgcgcgtgcccaccatgggctgttgtgtattacacgcattgtattgcatgcattttcacccagcctacccatctgtaagttgttgcatgttaacttttatactgaacatttaaccatgagtgcaacattttttcacatgcaattcattatggatcgagcgcgggcgaatcctatgtttcacaataatcatgcattgcgtgggtgcacaatcccatttaaatgttggcaatggatacacagtttataattcagtataaatatagttttttaatgacattagatatgcaatgtaacagatatttagaaaaaaaactaaggtttcttttggagttga
gi|2 : aatacttatta---GAAATAACAAG-TG-TAAGGTTTCGTTT-GTAATTGAGTGacgtgtatgccagaaatgaaaggaaacatgacttcttttacacaaaacaagatcattttgttgataaaatctcaaaatttaacaaaagttcattaatagcgttttaactcctgataactcaattttgacagtcagtgtcgcgtgtggccactatgcatgacacacaatgaactgcatgcatcgttactcagcctaccgatctgtttgttacctagtgctggtttatttgtcttggttttctttatactgaacatgtgttgtaaccatgagtgcaacatgtttttcacgtgcaattcatgattggccgagagcaggcgaatcttatatttcgcaatatactagtatgtgtgcacagacacacaatccagtccatgtatacgcagcataaatatatctttttgaatgaaattggatatgcaatgttacttatattcaggaaacacaactgtcagctttcttttagagttgagtgtatgtatgcccagttgaa
Alignments
lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 22222222222222222 1 11111 222222222222222222 5555555555555555555555555555555 111111111 11111111 1111111 22222222222 111 2222 3333333333 1 4444 11
lowQualScore : 1 99 22 88 5 999 3 1 222 3 4 3 2 5 1 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 55555555555555555 3 44 3 3 0 3 3 55 7777 3 44444 55 1 8888 4 3 0 2 3 1 555 0 555 3 333333333333333333 3 1111111111111111111111111111111 444444444 0 3 3 3 11111111 6666 44 44 0000000 3 44 00000000000 333 2 6666 555 33 888888 3 3 444 1 2 3 555 0 6666 44 3 2 555 2 33 888 66 5555 0 3 1 3 3 3 7777777777 4 4444 55
lowQualScore : . .. .. .. . ... . . ... . . . . . . ....................................................................................... ................. . .. . . . . . .. .... . ..... .. . .... . . . . . . ... . ... . .................. . ............................... ......... . . . . ........ .... .. .. ....... . .. ........... ... . .... ... .. ...... . . ... . . . ... . .... .. . . ... . .. ... .. .... . . . . . . .......... . .... ..
lowQualScore : 8 22 33 00 0 000 6 4 333 1 0 1 9 7 0 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 55555555555555555 3 33 6 6 9 6 6 00 7777 6 11111 00 0 9999 2 3 4 8 3 8 888 8 888 3 555555555555555555 6 5555555555555555555555555555555 555555555 8 1 1 8 22222222 5555 55 22 0000000 5 22 22222222222 999 9 1111 000 99 888888 1 1 777 2 9 1 444 8 5555 22 6 9 000 9 99 888 33 7777 7 8 4 1 3 3 4444444444 0 3333 88
consensus : TTAACATAT--ANAT-ATA-T-A-TACAC-TCAACTCCAAAAGAAA-CCTTAC-ACTTT-T-TATTTCACTTGTATGTC----A----------------------TT-------------------AAT-AAGG-AAATA-AT----T-----------------TTTACA-----------------CATAACAAGATCA-TTTC-A-TTT-T-AA-TAAAATGTCAAA-A--TAT----AACA-AA-----AGTTCATTT--ATAGCGTTTTGACTTATTTGATCTTAAAAGTGACT---ACCCAATNACTCCATTTTCAC-AGTCAATATC-GCGTGTGGCC---ACCGCG---GGC-TGCT----A----------T-GCA-TTG--------------CAC--------------GCAT---------CGTCACTCAGCCTACCCA-T-CTGTTA--------GTTGT----TGCTG-GTTAA--CT-------TGT--CTTGTGA----T--T---TTT---A-TA----CTGAAC---ATGTGT--TGTAACCATGA------GTGCAACAT-TTT-T-T-CACGTGCAATTCATGATA-GGCCGAGAGCGGGCGAATCGTATGTTTCGCAATATTCGTGCG-T---TGCGTGCGTGCACG----GACACACAATC--CCAATTAAATGGTGGCAATGGATACCCAGTT-GATAATTCAGCATA---AAT-A--T-A-TT--TTT----ATGAAATTGGATATGCAATGTAACAGATATTTAGGAAACAA-AACTG-TAAGGTTTCTTTT-GGAGTTGAGTGTA-G--AGNTCCCTGTACATTT----ATATTAA-NTATGTGTTT
Reference ( family-1101 ) : TTAATATAT--ANAT-ATA-T-G-TACAC-TCAACTCCAAAANNAA-CNTTAC-ACTTT-T-TATTTCACTTGTANGTC----A----------------------TT-------------------AAT------------------T-----------------TTTACA-----------------CATAACAAGATCA-TTTC-A-TTT-T-AA-TAAAATGTCAAA-A--TAT----AACA-AA-----AGTTCATTT--ATAGCGTTTTGACNTATTTGATCTTAAAAGTGACT---ACCCAATNACTCCATTTTCAC-AGTCAATATC-GCGTGTGGCC---ACCGCG---GGC-TGCT----A----------T-NCA-TTG--------------CAC--------------GCAT---------CGTCACTCAGCCTACCCA-T-CTGTTA--------GTTGT----TGCTG-GTTAA--CT-------TGT--CTTGTGA----T--T---TTT---A-TA----CTGAAC---ATGTGT--TGTAACCATGA------GTGCAACAT-TTT-T-T-CACGTGCAATTCATGATA-GGCCGAGAGCGGGCGAATCGTATGTTTCGCAATATTCGTGCG-T---TGCGTGCGTGCACG----GACACACAATC--CCAATTAAATGGTGGCAATGGATACCCAGTT-GATAATTCAGCATA---AAT-A--T-A-TT--TTT----ATGAAATTGGATATGCAATGTAACAGATATTTAGGAAACAA-AACTG-TAAGGTTTCTTTT-GGAGTTGAGTGTA-G--AGNTCCCTGTNCATTTCAAAATATTAA-GTATGTATTT
gi|1 : ACTCCAAAAGAAA-CCTTTC-ACTTT-T-TATTTCACTCTAACGTC----A----------------------
gi|1 : gtagtccatttatatagacacttatttcataagggaagatggtgaagtttttcatac-TTTT-A-TTT-C-AC-TCTAACGTCAGAGA--TA-----AATA-AATGGAAAGTTCATTT--ATAGCGTTTTGACGTATTTGATCTTAAAAGTGATC---GTCCAAATACTC-------------CAATATC-ACGTGTGGCC---ACCGCG---GGC-AGAT----T----------T-ACA-TTG--------------CAC--------------GCAT---------CGTCACTGAGCCTACCCA-T-CTGCTA--------GTTGT----TGCTG-GTTAA--TT-------TCT--TTTGCGA----C--T---TTTGTCA-TA----CTAAAC---ATGTGT--TGTAATCATGA------GTGCAAATT-TTT-T-T-CACGTGCAATTTATGATA-GGTCGAGAGCGGGCGAATCGTATGATTTGCAATTCTTGCGTG-T---TGCGTGCGCGTACG----TACACACAATC--CCAATTAAATGGTGACAGTGGTTATCCAGTT-GATAATTCATCATA---ACT-A--T-A-TTG-TTTTA--ATGAAATTGGATATACAATGTAACATATATTAAGGAAACAA-TACCG-TAAGGTATCTTTT-GGAGTTGAGTGTA-gagataaataaatggaaagttcatttatagcgttttgacgtatttgatcttaaaagtgatcgtccaaatactccaatatcacgtgtggccaccgcgggcagatttacattgcacgcatcgtcactgagcctacccatctgctagttgttgctggttaatttcttttgcgacttttgtcatactaaacatgtgttgtaatcatgagtgcaaatttttttcacgtgcaatttatgataggtcgagagcgggcgaatcgtatgatttgcaattcttgcgtgttgcgtgcgcgtacgtacacacaatcccaattaaatggtgacagtggttatccagttgataattcatcataactatattgttttaatgaaattggatatacaatgtaacatatattaaggaaacaataccgtaaggtatcttttggagttgagtgtattaaagaaatattgtatgataattttctctactactagttgattgttattgtgtgcagcggattgcaataacgttaaatatatcagttat
gi|10 : gtagtccatttatatagacacttatttcataagggaagatggtgaagtttttcatacactccaaaagaaacctttcactTTT-TATATTTCGCTTGTAAGTC----AGAGA------------------TT-------------------AATGAAGGTAT----------T-----------------TTTACG-----------------CATAACAAGATCA-TCTG-A-TTTCT-AA-TAAAATGTCGAA-A--GAT----ATCA-AA-----AAATCATTA--AAAGATTTTTG-CTCATTTGATCTTAAAAGTGACT---ACCCAGTGACTCTATTATCGCGAGTGACTAT--GCAT-TG--------CACG---TAT-TGCT----G------------ACATTTA--------------CAC--------------GCATGAAATAAACCACCGCTCTGACT--TTATT-CTGTGAGAAAGCGTGTTAT----TCTTGTGTCAAATCTACTCATCTGTTGCTTGTTAATTCT--T---CTT---G-TAATTTTTAAACTGAACATGTGTTGTAACTATGAGTCACTGTGGAACAT-TTT-T-T--ACGTGCAATTCATGATA-GGC---GAACGGG-GAATCGTATAAGTAACAATATTCATGCG-T---TGTGTGTGTGAATG----GGCACACAGTC--CCAAGTAAAttaaagaaatattgtatgataattttctctactactagttgattgttattgtgtgcagcggattgcaataacgttaaatatatcagttat
gi|11 : ccagacaacaatcgcagcattttCACCCGGC--ACCTG-TGCTGC-A--------ATTGT----TGCTG-ATTAA--CT-------TGT--CTTGTGA----TATTG--TTT---A-TA----TTGAAC---ATGTGT--TGCAACTATG--------TTTTATGT-TTT-AAT-CACGATTAATCAAT-ATAAGGCCGAGAGCGAGCGAAAAGTATGTCTCGCAATATCCGTGCGGTGCGTGCGTGCGTGCACG----GACACATAATC--CCAATTAAATGCTGGTAATGGATACCCAGTA-AATAATGCTGCATA---AAT-A--TCA-TTCATTTG---ATAGAAATGGATATACAATGTAACAGATATTAAGGAAAAAA-CACTG-TAAGGTATCTTTT-GGAGTTTAATATA--------CTCTATACATTT----ATATCAA-ag
gi|12 : ggttgttttaatacatgacaacgGCCTACTCG-T-CAGTCA--------CTTGT----TACTG-CTGAA--CT-------T------------------T---TTA---A-TA----CTGAAA---ATGTGT--TTTAACCATGA------GTGCAACGT-TTT-T-TTCGCTTGCAATTCATGGTA-GACCAAGAGTGTGCAAAGCGTATGTTTCGCAATATTCATGCA-T---TTCATGAATGCACA----GACACACAATC--CCAATTAAATGGTGACAATGGATACCCAGTT-GATAATTCAGCATA---CAT-A--TAA-TT--TTTTA--ATGAAATTTGATATGCATTGTAAAAGATTAATAGGAAACAA-AACTG-TAAGGTTTCTTTT-CAAGTTGAGTGCA-G---GTTCtcagtaccatatcttgtatcagttcagcagatgttatacttggcttcactagtgta
gi|13 : tt---TTT---A-TA----CTGAAC---CTGTTT--TGTAACCATGA------GTGCAATAT-TTTTT-T-CACGTGCAATTTATGATA-GGTCGGAAACAGGCGAGTCGTATGTTTCGAAATATCCGTGTG-T---AGCGTGCGTGCACG----TACACACAATA--ATAGTTAAA-GGTGACACTCGATAGCCAGGT-AATAATTCAGCATA---AAT-A--T-A------------ATTAA---GGA----------AACAAATA----------------TG-TAAGGTTTCTTCT-GGAGTTCAGTGTA-aatgaaagaataacatcacaaatatttaataaaaaataaatttgatttttcagtt
gi|13 : tttgAAGATAT--ACCT-AGA-T-AATACAC-TGAACTCCAGAAGAAA-CCTTAC-A-TAT-T-TGTTTC-CTTttatctaggtatatcttcacttagttttgttaaaaaacgttaaatattacgacagtta
gi|14 : tttgtttatactgaacctgttttgtaaccatgagtgcaatatttttttcacgtgcaatttatgataggtcggaaacaggcgagtcgtatgtttcgaaatatccgtgtgtagcgtgcgtgcacgtacacacaataatagttaaaggtgacactcgatagccaggtaataattcagcataaatataatt-----------------TTTACA-----------------CATAACAAGATAG-ATTC-A-TTT-TTAA-TAAAATGTCAAA-A--CAT----AACA-AA-----GGTGCATTT--ATAGCGTTTTGACTTATTTGATCTTAAAAGTGAAC---ACCAGACTACTCCATTTGCTT-AGTTAATATC-GCGTATGCCC---GCCGCG---GGC-TGCT----ATGCATTGCATT-GCA-TTG--------------CAT--------------GCAT---------CGTCACTTAGTATACCCG-T-CTGCTA--------GTTGT----TGCTG-ATTAA--CT-------TGT--CTTGTGA----T--T---TTTTG-A-TA----CTGAAC---ATGTGT--TGTcacttagttttgttaaaaaacgttaaatattacgacagtta
gi|15 : tcagagattaataaagggaaataaatgaaca-TACAC-TCAACACCGAA-TAAA-CGTTAC-ACTTT-T-TTTTTTACTTGTATGAC----AGAGG------------------TT-------------------AATAAAGATAAATAAAT----TA----------------TTTACA-----------------CATAACACGATCT-TTTC-A-TTT-TGAA-TAAAATGCCAAA-T--CAT----AACA-AA-----AGTTAATTT--ATAGCATTTTGACTTTTTTGATCTCAAAAGTTACT---ACCCAATTACTCCAATGTCAA-AGTCAATATC-GCAAGGGGCC---ACCACA---GGC-TACT----G----------T-
gi|16 : TCATGATA-GACCGAGAGCAGGTGAATCGCATGTTTCGCAGCATTCGTGCG-T---TGTGTGTGTGCACGCACGGACACGCAATC--CCAATTAAATGGTGGCAGTAGATACACAGTT-GATAATTCAG-------AAT-A--T-T-TT--TTT----
gi|17 : tcttaaaccgaaacacgatctatgtgtaacttgctatcggacaataaatcactcaaaattagtttaatacgacattaATATTT--AACTCATG-C-A-TACAC-TCATCTCTAAAAGGAA-CTTTAC-ACTTT-T-TATTTGACTCGGATGGCCGATA----------------------TT-------------------AATAAAGGGAAATATATTGA-T-----------------TTTACACATATATTAATTTTACACATAATAAGATCA-TTTT-ATTTT-T-AA-TAAAATGTCAAA-A--TAT----AACA-AA-----ATTTTATTT--ATAttttttatgaa
gi|18 : aaaagT--TTA----ATGCAATTGAATATGAAATGTAAGAGATATT-AAGAAATAA-AACTG-TTAGGTTTCTTTC-TGAGTTTAGTGTA-
gi|19 : CCAGTT-GATAATTCAGCATA---AAT-AAAT-G-TT--GTT----ATGATATTGGATATGCAATGTAGCCGATATTTAGGAtattaacagtatacaggtagatttgttctactattgttta
gi|2 : TTAATATAT--AACT--TA-T-A-TACAC-TCAATTACAAACGAAA-CCTTAC-ACTTG-T-TATTTCACTGGTATGTCAGAGA----------------------TT-------------------AATAAAGGGAAATTAATGGA-T-----------------TTTACA-----------------CAGAACAGGATCA-TATC-
gi|2 : taATCTTGAAAGTGACTGCAACTCAATAACTCCATTTTCAC-AGTCAATATC-GCGTGTGACC---ACTTCG---GGC-TGCT----A----------T-GCA-TTGTACCCATTGTATTGCAC--------------GCAT---------CGTCACTCAGCCTACCCA-A-CTGTTA--------TTTGT----TGCTG-GTCAA--CG-------TGT--CTTGTGA----T--TGTTTTT---A-TA----CTGAAC---AAGTGC--TGAAATCATGA------GTGCAACAT-TTT-T-T-CACGTGCAGTGCATGAGA-AGCTGAGGGTGGGCGAATGGTATGTTTCGCAATAGTCGTGCA-T---TGCGTGCGTG-ACA----AACAttgaaagtgactgcaactcaataactccattttcacagtcaatatcgcgtgtgaccacttcgggctgctatgcattgtacccattgtattgcacgcatcgtcactcagcctacccaactgttatttgttgctggtcaacgtgtcttgtgattgtttttatactgaacaagtgctgaaatcatgagtgcaacattttttcacgtgcagtgcatgagaagctgagggtgggcgaatggtatgtttcgcaatagtcgtgcattgcgtgcgtgacaaacatttactgaacgggttagttgttccgttcagtttacaatcagtttataatcatccaattaaatagcaataatggatacacagttgtttaatcagcatatacaattatattgtggaattgaatatgcaatatatcagatatttaagaaacaaaactgtaaggctacttttggagttgacgaatacgatacattgt
gi|2 : tattaatatataacttatatacactcaattacaaacgaaaccttacacttgttatttcactggtatgtcagagattaataaagggaaattaatggattttacacagaacaggatcatATAATCATCCAATTAAATAGCAATAATGGATACACAGTT-GTTTAATCAGCATATACAATTA--T-A-TT---------GTGGAATTGAATATGCAATATATCAGATATTTAAGAAACAA-AACTG-TAAGGCTACTTTT-GGAGTTGAtttactgaacgggttagttgttccgttcagtttacaatcagtttataatcatccaattaaatagcaataatggatacacagttgtttaatcagcatatacaattatattgtggaattgaatatgcaatatatcagatatttaagaaacaaaactgtaaggctacttttggagttgacgaatacgatacattgt
gi|2 : tattaatatataacttatatacactcaattacaaacgaaaccttacacttgttatttcactggtatgtcagagattaataaagggaaattaatggattttacacagaacaggatcatatcttgaaagtgactgcaactcaataactccattttcacagtcaatatcgcgtgtgaccacttcgggctgctatgcattgtacccattgtattgcacgcatcgtcactcagcctacccaactgttatttgttgctggtcaacgtgtcttgtgattgtttttatactgaacaagtgctgaaatcatgagtgcaacattttttcacgtgcagtgcatgagaagctgagggtgggcgaatggtatgtttcgcaatagtcgtgcattgcgtgcgtgacaaacatttactgaacgggttagttgttccgttcagtttacaatcagtttAT-GTA-TCG-TATTCGTCAACTCCAAAAGTAG-CCTTAC-A-GTT-T-TGTTTCcgaatacgatacattgt
gi|3 : tattaatatataacttatatacactcaattacaaacgaaaccttacacttgttatttcactggtatgtcagagattaataaagggaaattaatggattttacacagaacaggatcatatcttgaaagtgactgcaactcaataactccattttcacagtcaatatcgcgtgtgaccacttcgggctgctatgcattgtacccattgtattgcacgcatcgtcactcagcctacccaactgttatttgttgctggtcaacgtgtcttgtgattgtttttatactgaacaagtgctgaaatcatgagtgcaacattttttcacgtgcagtgcatgagaagctgagggtgggcgaatggtatgtttcgcaatagtcgtgcattgcgtgcgtgacaaacatttactgaacgggttagttgttccgttcagtttacaatcagtttataatcatccaattaaatagcaataatggatacacagttgtttaatcagcatatacaattatattgtggaattgaatatgcaatatatcagatatttaaTTAACGTAT--ACAT-ATAAT-G-TACGC-TCAACTCCTCAACTAA-CCTTAC-ACCTT-T-TATCTCACTTGTAAATC----A----------------------TT-------------------AAT------------------T-----------------TGTACC-----------------CATAAGAAAATCA-TGTCTA-TTT-T-GA-TAAAATGCCAAG-A--TAT----AACA-AA-----AGTTCATTG--AAAGCATTTCGACTTATTTGATCTTAAAAATGACT---ACCCAATTACTCCATTTTTAC-A-TCAGTATC-GCTTGTGGCC---ACCGCG---GGT-TGCT----A----------T-CCA-TTA--------------CAC--------------GCAT---------CGTCACTCAATCTGCTAA-T-CTGTTA--------GTTGT----TTCTG--TTAA--CT-------TTT--CTAGTGA----T--T---TTT---A-TA----CTGAAC---ATGTGT--TGTTACTATGA------GTGCAACAT-TTG-G-T-CACGTGCCATACATAATA-GGTCGAGAGCGGGCGAATAGTATGTTTCGCAATATTTG-GCG-T---TGCGTGCGTGCACG----GACACACAATC--CCAATTAAATGGTGACAATGGATACACAGAT-GATAATTCAGCATA---AAT-A--T-A-TT--TTT----ATGAAATTGGATATGCAATGTAACAAATGTTTAGGAAACAA-AACTG-TAAGGTTTCTTTT-GGAATCGAATGGAGG--AGGT--TTGAACATTT----ATATTCATTTATGTGTTTtgt
gi|4 : GAAATAATAAGTGGTAAGGTTTCTTTTTGGAATCGAGTGTA-GCCAGATTCCTGT-CATTTCAAAATATTAA-GTATGTATTTgt
gi|4 : aatacttatta-TACAC-TCGATTCCAAAAAGAAACCTTACCACTTA-T-TATTTCACGTGTATGCC----A----------------------GA-------------------AATGAAAGGAAACATGACTTCT-----------------TTTACA-----------------CAAAACAAGATCA-TTT----TGT-T-GA-TAAAATCTCAAA-A--TTT----AACA-AA-----AGTTCATTA--ATAGCGTTTTAACT-------------------------CCTGATAACTCAATTTTGAC-AGTCAGTGTC-GCGTGTGGCC---ACTATGCATGACACACA----A----------T-GAA-CTG--------------CAT--------------GCAT---------CGTTACTCAGCCTACCGA-T-CTGTTT--------GTTACCTAGTGCTG-GTTTA--TT-------TGT--CTTG-GT----T--TTC-TTT---A-TA----CTGAAC---ATGTGT--TGTAACCATGA------GTGCAACATGTTT-T-T-CACGTGCAATTCATGATT-GGCCGAGAGCAGGCGAATCTTATATTTCGCAATATAC------T---AGTATGTGTGCACA----GACACACAATC--C---------AGT--CCATGTATAC---G----------CAGCATA---AAT-A--T-A-TC--TTTTTGAATGAAATTGGATATGCAATGTTACTTATATTCAGGAAACAC-AACTG-TCAGCTTTCTTTT-AGAGTTGAGTGTA-acgtgtatgccagaaatgaaaggaaacatgacttcttttacacaaaacaagatcattttgttgataaaatctcaaaatttaacaaaagttcattaatagcgttttaactcctgataactcaattttgacagtcagtgtcgcgtgtggccactatgcatgacacacaatgaactgcatgcatcgttactcagcctaccgatctgtttgttacctagtgctggtttatttgtcttggttttctttatactgaacatgtgttgtaaccatgagtgcaacatgtttttcacgtgcaattcatgattggccgagagcaggcgaatcttatatttcgcaatatactagtatgtgtgcacagacacacaatccagtccatgtatacgcagcataaatatatctttttgaatgaaattggatatgcaatgttacttatattcaggaaacacaactgtcagctttcttttagagttgagtgtatgtatgcccagttgaa
gi|5 : aatacttattaaaatacatacttaatattttgaaatgacaggaatctggcAA-C-TTAC-ACTTT-T-TATTTCACTTGTATGTT----A----------------------tgtatgcccagttgaa
gi|5 : aatacacataaaaaagtacatgtttaagattcaagatctcacaacgtgcatggcacatctgattgaagtacatctAATAAC--CGCTTTCAC-TGTCA-TGTCAGCGCG---CC---GACTCA---ATC-TACTTCCGA----------T--CA-TTG---------------------------------AT---------CGTC--TCAGCCTATCCA-T-CTGTAA--------CTTGT----TGCTG-TGTAA--CT-------TGT--CTAGTGT----T--G---TTT---T-TA----TCGGAC---ATGTGT--TGTAACCATGC------GTGCAATAT-TTG-T-T-CACGGAAAAGTCATGATA-TACCGAAAGTGGTCGAATTATATGTATGGCAATATTCGTGCG-A---TGCGTGCTTGCACG----GACACATACTC--CCAATTAAAT-ATGACAATGGACGCCCAGTT-GACACTTTATCATA---A-----------T--TAT----ATGCAGTC--AC-TG---TGTAACAAATACTAAGGAAAC-A-AACTG-TAAGGTTTCTTTT-CGAGTGGAGTGTA-gcaactaataaaataaggcatacaattgatttttacatacaacagattttcccgctgacccttctctcgaggtcatgcacagtcatgtataaacaccggaaatgcagaataaccgctttcactgtcatgtcagcgcgccgactcaatctacttccgatcattgatcgtctcagcctatccatctgtaacttgttgctgtgtaacttgtctagtgttgtttttatcggacatgtgttgtaaccatgcgtgcaatatttgttcacggaaaagtcatgatataccgaaagtggtcgaattatatgtatggcaatattcgtgcgatgcgtgcttgcacggacacatactcccaattaaatatgacaatggacgcccagttgacactttatcataattatatgcagtcactgtgtaacaaatactaaggaaacaaactgtaaggtttcttttcgagtggagtgtacgctacagatgaaa
gi|6 : aatacacataaaaaagtacatgtttaagattcaagatctcacaacgtgcatggcacatctgattgaagtacatctaacttacactttttatttcacttgtatgttagcaactaataaaataaggcatacaattgatttttacatacaacagattttcccgctgacccttctctcgaggtcatgcacagtcatgtataaacaccggaaatgcagTTAACACGTTGAAAT-ATA-T-G-TACAC-TGAACTCAAAAAATA--CGTTAC-ACTTT-T-TATTTCACTTGTATGTT----A----------------------TTTATAAGGGGAAATAAATGAAAT------------------T-----------------TTCATA-----------------CATAACAAGATCA-ATTC-A-CTT-T-AAATAAATTGTCAAA-A--CAG----AACA-AA-----AGTTTGTTT--TTAGCGTTTTGACATATTTGATCTTAAATGAGAC----AACCAAT-----------------TC-----C-GCATGTTGCC---GCCGCG---TGC-TGCT----A----------T-GCA-TTGCACATCTTGCATTGCAC--------------GTAT---------TGTAACTAAGCCTGCATA-T-CTGTAA--------GTTTT----TGCTG-GTTAA--CT-------TGT--TTTGTGA----T--T---TTTTTTA-TA----CTGAAC---ATGTGC--GGTAACCATGA------TTGCAA-AT-TTT-T--------------CATAAC----------GCGTGCGAATCGTATATTTTGATATATTCGTGCG-T---TACGTTCGTGCATG----GACATACAATT--TCAATTAAATGCTGGCAATGAGTACACAGTT-GACAATTCAGCATA---AAT-A--T-A-TT--TTTG---ATGAAATTGGAAATGCAATGTAAAATATATCT---AAACAT-AACTG-TACGGTTTCTCTT-GAAATTGAGTGTA-cgctacagatgaaa
gi|7 : gctatATAC-TAAACTCCAAAAGAAA-CTTTAC-ACTTT-T-TATTTCACTTGTATGTC----AGAGATTGATAAAAGGAAATAAATC-------------------AGT------------------T-----------------TTTACA-----------------CATAA---GATAA-TTTC-A-TTT-TTAA-TAAAATGTCGAA-ACTTATCGTGAACACAACT---AGATCATTTGTATAGCTTTTTTATTTATTTGATCTTAAAGGTGACT---ACCCAATAACTGCATTTTCAC-AGTCAATATT-GCGCGTGCCC---ACCATG---GGC-TGTT----G----------T-GTA-TTA--------------CACGCATTGTATTGCATGCAT---------TTTCACCCAGCCTACCCA-T-CTGTAA--------GTTGT----TGCAT-GTTAA--CT-------T-----------------------TT---A-TA----CTGAAC---AT------T-TAACCATGA------GTGCAACAT-TTT-T-T-CACATGCAATTCATTATG-GATCGAGCGCGGGCGAATCCTATGTTTCACAATAATCATGCA-T---TGCGTGGGTG------------CACAATC--CCATTTAAATGTTGGCAATGGATACACAGTT-TATAATTCAGTATA---AAT-A--T-AGTT--TTTTA--ATGACATTAGATATGCAATGTAACAGATATTTAGAAAA-AA-AAC---TAAGGTTTCTTTT-GGAGTTGAtatatatacaaatatgtgt
gi|8 : tacATAT--ATAT-GTA-T-A-TATAC-T-AATGCCAAACAAAA-ATTTAT-ACCTT-T-TTTGCCACTTGTATGTCCGAAA----------------------CT-------------------AAT------------------CAAGGGAAACAATGAAGATTTACA-----------------TATAACAAAATCAATTTA-A-TGA-C-AA-TTAAATGTAAAA-A--CAT----AAGA-AA-----AGTGCATTC--ATAGCATTT--ATATATTTGATCTTAAAAGTGACT---ACCCAGTAACTCCATTTTCAT-AGTCAGTATC-GCGTGTCGCC---ACCGCT---GAC-CGCT----A----------T-GCA-TTG--------------CAC-----------------T---------TGTCA--------ACCCA-T-CTGTTA--------GTTGT----TGCTG-ATTAA--CT-------TGT--CTTGTGA----T--TG--TTT---AATA----CTTAAC---AAGGGT--AGTAACCAGGA------GTGCAACAT-TTT-T---CACCTGCGATTCATGATA-AGCTAATAGCGGGCGAATCGTATATTTCGCAATATATATGCA-G---AGCGTATATGCACG----GACACACAATC--CCACTTAAATGATAGCAATTGATACTCAATT-GATAATCCAGCATA---AAT-A--G-C-GT--TTA----ATGAACTT
gi|9 : gtcgtgttgcagTG-T-A-TAGAG-TCAATTC----GTAAA-TATT-C-ACTTTATATATTTCACTTGTATGAC----AGAGA------------------TT-------------------AATCAAGGCAAATACATGATTT-----------------TTTACA-----------------CATAACAAAATCA-TTTC-G-TTT-T-TA-TTAAATATCAAA-A--TAA----AACA-AA-----TGTTAATTT--ATAGCGTTTTGACATAATTGAATTTAAAAGTA------ACCTAGTTACTTCATTTTCAC-ATCCAATATC-GCGTGTGGACTAGATTAC------C-T-CT----C----------TCACA-TCC--------------CA---------------ACAT---------TG--ATTGTGTTT---CA-T-CTTTTA--------GTTGT----TGCTG-GTTAA--CT-------ACT--CTTATGA----TTGT---TTT---A-TA----CTGAAC---ATTTGA--TGTAACCATGA------ATGCAACA--TTT-T-T-CACGTGCAATTCAT-----GGTCAGTAGCGAGCGAcaagttgtttctgtcggagttgaggagttgagtgta
gi|9 : tatctatttaaacatcgccatttgtAAATAAATAGTGGCAATGAATACCCAATTTGATAAATCAGCATA---GAT-A--T-AATT--GTTCA--ATTAAATTAGTTACGCAATGTAACAACTATTTTGAAAATAA-AActtaaaatatataataaatataaaataaatagtggcaatgaatacccaatttgataaatcagcatagatataattgttcaattaaattagttacgcaatgtaacaactattttgaaaataaaa
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 11111 1111111111 55555555555555555555555555555 11111111 111 2222 55555555555 2222 11
lowQualScore : 99 7 0 4 11111 3 1 3 0 0 3 3 5 555 3 44 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666 555 3 555 0 888888 77 33 3 3 0 3 3 55 7777 3 44444 55 1 8888 4 222 2 3 1 555 1 6666 3 7777 7777777777 66666666666666666666666666666 1 0 3 1 6666 1 5 00000000 33 333 2 888888 3 3 444 1 2 3 555 0 6666 44 3 2 555 2 33 888 66 5555 0 3 1 3 3 3 77777777777 55 1111 3 11
lowQualScore : .. . . . ..... . . . . . . . . ... . .. ..................................................................................... ... . ... . ...... .. .. . . . . . .. .... . ..... .. . .... . ... . . . ... . .... . .... .......... ............................. . . . . .... . . ........ .. ... . ...... . . ... . . . ... . .... .. . . ... . .. ... .. .... . . . . . . ........... .. .... . ..
lowQualScore : 22 5 1 4 11111 6 4 6 2 2 3 1 7 000 1 22 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888 444 1 444 8 888888 33 22 6 6 9 6 6 00 7777 6 11111 00 2 9999 2 777 8 3 8 888 6 8888 3 1111 9999999999 55555555555555555555555555555 2 5 1 9 5555 4 4 11111111 99 999 9 888888 1 1 777 2 9 1 444 8 5555 22 6 9 000 9 99 888 33 7777 7 8 4 1 3 3 55555555555 88 2222 2 00
consensus : TTAACATAT--ANATATA-T-----A-TACACTCAACTCCAAAA-GAAACCTTAC-ACTTT-T-TATTTCACT---TGTAT-GT--C----A----TT-----A----AT--AA--GG------A--AA-----T--A------------------A-----T---T-----T---T-TACACAT---AACAAGA------TCA--TTTC-A-TTT-T-AA-TAAAATGTCAAA-A--TAT----AACA-AA-----AGTTCATTT--ATAGCGTTTTGACTTATTTGATCTTAAAAGTGACT---ACCCAATNACTCCATTTTCACAGTCAATATC-GCGTGTGGCC---ACCGCG---GGC-TGCT----AT----------GCAT--------------T--------------GCACGCATCGTCACTCAGCCTACCCAT-CTGTTAGTTGT----TGCTGGTTAACTTGTCTTGTGA---T--T-T--TT---A-TACTGAACATGTGTTGTAACCATGA------GTGCAACAT-TTT-T-T-CACGTGCAATTCATGATA-GGCCGAGAGCGGGCGAATCGTATGTTTCGCAATATTCGTGCG-T---TGCGTGCGTGCACG----GACACACAATC--CCAATTAAATGGTGGCAATGGATACCCAGTT-GATAATTCAGCATA---AAT-A--T-A-TT--TTT----ATGAAATTGGATATGCAATGTAACAGATATTTAGGAAACAA-AACTG-TAAGGTTTCTTTT-GGAGTTGAGTGTA-G--AG-TCCCTGTACATTT----ATATCAA-NTATGTGTTT
Reference ( family-1101 ) : TTAACATAT--ANATATA-T-----A-TACACTCAACTCCAAAA-GAAACCTTAC-ACTTT-T-TATTTCACT---TGTAT-GT--C----A----TT-----A----AT--AA--GG------A--AA-----T--A------------------A-----T---T-----T---T-TACACAT---AACAAGA------TCA--TTTC-A-TTT-T-AA-TAAAATGTCAAA-A--TAT----AACA-AA-----AGTTCATTT--ATAGCGTTTTGACTTATTTGATCTTAAAAGTGACT---ACCCAATNACTCCATTTTCACAGTCAATATC-GCGTGTGGCC---ACCGCG---GGC-TGCT----AT----------GCAT--------------T--------------GCACGCATCGTCACTCAGCCTACCCAT-CTGTTAGTTGT----TGCTGGTTAACTTGTCTTGTGA---T--T-T--TT---A-TACTGAACATGTGTTGTAACCATGA------GTGCAACAT-TTT-T-T-CACGTGCAATTCATGATA-GGCCGAGAGCGGGCGAATCGTATGTTTCGCAATATTCGTGCG-T---TGCGTGCGTGCACG----GACACACAATC--CCAATTAAATGGTGGCAATGGATACCCAGTT-GATAATTCAGCATA---AAT-A--T-A-TT--TTT----ATGAAATTGGATATGCAATGTAACAGATATTTAGGAAACAA-AACTG-TAAGGTTTCTTTT-GGAGTTGAGTGTA-G--AGNTCCCTGTACATTT----ATATTAA-NTATGTGTTT
gi|1 : -TAGTCCATT---TATATAGA--C----AC---TT-----ATTTCAT--AA--GG------G--AAGATGGT--G------------------AAGT--T---T-----T---T-CATACACTCCAA-AAGAAACCTTTCACTTTTT-A-TTT-C-AC-TCTAACGTCAGAGA--TA-----AATA-AATGGAAAGTTCATTT--ATAGCGTTTTGACGTATTTGATCTTAAAAGTGATC---GTCCAAATACTC------------CAATATC-ACGTGTGGCC---ACCGCG---GGC-AGAT----TT----------ACAT--------------T--------------GCACGCATCGTCACTGAGCCTACCCAT-CTGCTAGTTGT----TGCTGGTTAATTTCTTTTGCGA---C--T-T--TTGTCA-TACTAAACATGTGTTGTAATCATGA------GTGCAAATT-TTT-T-T-CACGTGCAATTTATGATA-GGTCGAGAGCGGGCGAATCGTATGATTTGCAATTCTTGCGTG-T---TGCGTGCGCGTACG----TACACACAATC--CCAATTAAATGGTGACAGTGGTTATCCAGTT-GATAATTCATCATA---ACT-A--T-A-TTG-TTTTA--ATGAAATTGGATATACAATGTAACATATATTAAGGAAACAA-TACCG-TAAGGTATCTTTT-GGAGTTGAGTGTA-
gi|1 : gTTATCATAC--A-ATATT-TCTTTAA-TACACTCAACTCCAAAA-GATACCTTAC-G-GTA-T-TGTTTC-CTTAATATAT-GTTAC----A----TT-----ttaaagaaatattgtatgataattttctctactactagttgattgttattgtgtgcagcggattgcaataacgttaaatatatcagttat
gi|10 : gtagtccatttatatagacacttatttcataagggaagatggtgaagtttttcatacactccaaaagaaacctttcactttttatttcactctaacgtcagagataaataaatggaaagttcatttatagcgttttgacgtatttgatcttaaaagtgatcgtccaaatactccaatatcacgtgtggccaccgcgggcagatttacattgcacgcatcgtcactgagcctacccatctgctagttgttgctggttaatttcttttgcgacttttgtcatactaaacatgtgttgtaatcatgagtgcaaatttttttcacgtgcaatttatgataggtcgagagcgggcgaatcgtatgatttgcaattcttgcgtgttgcgtgcgcgtacgtacacacaatcccaattaaatggtgacagtggttatccagttgataattcatcataactatattgttttaatgaaattggatatacTTT-TATATTTCGCT---TGTAA-GT--C----AGAGATT-----A----ATG-AA--GG----------------T--A------------------------T---T-----T---T-TACGCAT---AACAAGA------TCA--TCTG-A-TTTCT-AA-TAAAATGTCGAA-A--GAT----ATCA-AA-----AAATCATTA--AAAGATTTTTG-CTCATTTGATCTTAAAAGTGACT---ACCCAGTGACTCTAT------------TATC-GCGAGTG--------------------ACT----AT----------GCAT--------------T--------------GCACGTATTGttttctctactactagttgattgttattgtgtgcagcggattgcaataacgttaaatatatcagttat
gi|10 : ccagacaacaatcgcagcattttCTACTCAT-CTGTT-----------GCTTGTTAATTCTTCTTGTAA---T--T-T--TT---A-AACTGAACATGTGTTGTAACTATGAGTCACTGTGGAACAT-TTT-T-T--ACGTGCAATTCATGATA-GGC---GAACGGG-GAATCGTATAAGTAACAATATTCATGCG-T---TGTGTGTGTGAATG----GGCACACAGTC--CCAAGTAAActgacatttacacgcatgaaataaaccaccgctctgactttattctgtgagaaagcgtgttattcttgtgtcaaatctactcatctgttgcttgttaattcttcttgtaatttttaaactgaacatgtgttgtaactatgagtcactgtggaacattttttacgtgcaattcatgataggcgaacggggaatcgtataagtaacaatattcatgcgttgtgtgtgtgaatgggcacacagtcccaagtaaaag
gi|11 : ccagacaacaatcgcagcattttttttatatttcgcttgtaagtcagagattaatgaaggtatttttacgcataacaagatcatctgatttctaataaaatgtcgaaagatatcaaaaaatcattaaaagatttttgctcatttgatcttaaaagtgactacccagtgactctattatcgcgagtgactatgcattgcacgtattgctgacatttacacgcatgaaataaaccaccgctctgactttattctgtgagaaagcgtgttattcttgtgtcaaatCACCCGGC--ACCTGTGCTGC-AATTGT----TGCTGATTAACTTGTCTTGTGA---TATTGT--TT---A-TATTGAACATGTGTTGCAACTATG--------TTTTATGT-TTT-AAT-CACGATTAATCAAT-ATAAGGCCGAGAGCGAGCGAAAAGTATGTCTCGCAATATCCGTGCGGTGCGTGCGTGCGTGCACG----GACACATAATC--CCAATTAAATGCTGGTAATGGATACCCAGTA-AATAATGCTGCATA---AAT-A--TCA-TTCATTTG---ATAGAAATGGATATACAATGTAACAGATATTAAGGAAAAAA-CACTG-TAAGGTATCTTTT-GGAGTTTAATATA--------CTCTATACATTT----ATATCAA-TCAag
gi|12 : ggttgttttaatacatgacaacgGCCTACTCGT-CAGTCACTTGT----TACTGCTGAACTT---------------T-T--TA---A-TACTGAAAATGTGTTTTAACCATGA------GTGCAACGT-TTT-T-TTCGCTTGCAATTCATGGTA-GACCAAGAGTGTGCAAAGCGTATGTTTCGCAATATTCATGCA-T---TTCATGAATGCACA----GACACACAATC--CCAATTAAATGGTGACAATGGATACCCAGTT-GATAATTCAGCATA---CAT-A--TAA-TT--TTTTA--ATGAAATTTGATATGCATTGTAAAAGATTAATAGGAAACAA-AACTG-TAAGGTTTCTTTT-CAAGTTGAGTGCA-G---GTTCgtaccatatcttgtatcagttcagcagatgttatacttggcttcactagtgta
gi|13 : tt-T--TT---A-TACTGAACCTGTTTTGTAACCATGA------GTGCAATAT-TTTTT-T-CACGTGCAATTTATGATA-GGTCGGAAACAGGCGAGTCGTATGTTTCGAAATATCCGTGTG-T---AGCGTGCGTGCACG----TACACACAATA--ATAGTTAAA-GGTGACACTCGATAGCCAGGT-AATAATTCAGCATA---AAT-A--T-A------------ATTAA---GGA----------AACAAATA----------------TG-TAAGGTTTCTTCT-GGAGTTCAGTGTA-aatgaaagaataacatcacaaatatttaataaaaaataaatttgatttttcagtt
gi|13 : tttgAAGATAT--ACCTAGA-T-----AATACACTGAACTCCAGAA-GAAACCTTAC-A-TAT-T-TGTTTC-CT---Tttatctaggtatatcttcacttagttttgttaaaaaacgttaaatattacgacagtta
gi|14 : tttgtttatactgaacctgttttgtaaccatgagtgcaatatttttttcacgtgcaatttatgataggtcggaaacaggcgagtcgtatgtttcgaaatatccgtgtgtagcgtgcgtgcacgtacacacaataatagttaaaggtgacactcgatagccaggtaataattcagcataaatataatt----A----TT-----A----AT--AAAGGG------A--AA-----T--A------------------A-----A---TGAACAT---T-TACACAT---AACAAGA------TAG--ATTC-A-TTT-TTAA-TAAAATGTCAAA-A--CAT----AACA-AA-----GGTGCATTT--ATAGCGTTTTGACTTATTTGATCTTAAAAGTGAAC---ACCAGACTACTCCATTTGCTTAGTTAATATC-GCGTATGCCC---GCCGCG---GGC-TGCT----ATGCATTGCATTGCAT--------------T--------------GCATGCATCGTCACTTAGTATACCCGT-CTGCTAGTTGT----TGCTGATTAACTTGTCTTGTGA---T--T-T--TTTG-A-TACTGAACATGTGTTGTcacttagttttgttaaaaaacgttaaatattacgacagtta
gi|15 : tcagag-TACACTCAACACCGAA--TAAACGTTAC-ACTTT-T-TTTTTTACT---TGTAT-GA--C----AGAGGTT-----A----AT--AA--AG------ATAAA-----T--A------------------AA----T---TA----T---T-TACACAT---AACACGA------TCT--TTTC-A-TTT-TGAA-TAAAATGCCAAA-T--CAT----AACA-AA-----AGTTAATTT--ATAGCATTTTGACTTTTTTGATCTCAAAAGTTACT---ACCCAATTACTCCAATGTCAAAGTCAATATC-GCAAGGGGCC---ACCACA---GGC-TACT----GT----------
gi|16 : TCATGATA-GACCGAGAGCAGGTGAATCGCATGTTTCGCAGCATTCGTGCG-T---TGTGTGTGTGCACGCACGGACACGCAATC--CCAATTAAATGGTGGCAGTAGATACACAGTT-GATAATTCAG-------AAT-A--T-T-TT--TTT----
gi|17 : tcttaaaccgaaacacgatctatgtgtaacttgctatcggacaataaatcactcaaaattagtttaatacgacattaATG-C-----A-TACACTCATCTCTAAAA-GGAACTTTAC-ACTTT-T-TATTTGACT---CGGAT-GG--CCGATA----TT-----A----AT--AAAGGG------A--AA-----T--ATATTGATTTTACACATATA-----T---TAAT--T---T-TACACAT---AATAAGA------TCA--TTTT-ATTTT-T-AA-TAAAATGTCAAA-A--TAT----AACA-AA-----ATTTTATTT--ATAttttttatgaa
gi|18 : aaaagatatttaactcT--TTA----ATGCAATTGAATATGAAATGTAAGAGATATT-AAGAAATAA-AACTG-TTAGGTTTCTTTC-TGAGTTTAGTGTA-
gi|19 : CCAGTT-GATAATTCAGCATA---AAT-AAAT-G-TT--GTT----ATGATATTGGATATGCAATGTAGCCGATATTTAGGAtattaacagtatacaggtagatttgttctactattgttta
gi|2 : TTAATATAT--AACT-TA-T-----A-TACACTCAATTACAAAC-GAAACCTTAC-ACTTG-T-TATTTCACT---GGTAT-GT--CAGAGA----TT-----A----AT--AAAGGG------A--AAT----T--A------------------A-----TGGAT-----T---T-TACACAG---AACAGGA------TCA--TATC-
gi|2 : taATCTTGAAAGTGACTGCAACTCAATAACTCCATTTTCACAGTCAATATC-GCGTGTGACC---ACTTCG---GGC-TGCT----AT----------GCATTGTACCCATTGTATT--------------GCACGCATCGTCACTCAGCCTACCCAA-CTGTTATTTGT----TGCTGGTCAACGTGTCTTGTGATTGT--T-T--TT---A-TACTGAACAAGTGCTGAAATCATGA------GTGCAACAT-TTT-T-T-CACGTGCAGTGCATGAGA-AGCTGAGGGTGGGCGAATGGTATGTTTCGCAATAGTCGTGCA-T---TGCGTGCGTG-ACA----AACAttgaaagtgactgcaactcaataactccattttcacagtcaatatcgcgtgtgaccacttcgggctgctatgcattgtacccattgtattgcacgcatcgtcactcagcctacccaactgttatttgttgctggtcaacgtgtcttgtgattgtttttatactgaacaagtgctgaaatcatgagtgcaacattttttcacgtgcagtgcatgagaagctgagggtgggcgaatggtatgtttcgcaatagtcgtgcattgcgtgcgtgacaaacatttactgaacgggttagttgttccgttcagtttacaatcagtttataatcatccaattaaatagcaataatggatacacagttgtttaatcagcatatacaattatattgtggaattgaatatgcaatatatcagatatttaagaaacaaaactgtaaggctacttttggagttgacgaatacgatacattgt
gi|2 : tattaatatataacttatatacactcaattacaaacgaaaccttacacttgttatttcactggtatgtcagagattaataaagggaaattaatggattttacacagaacaggatcatATAATCATCCAATTAAATAGCAATAATGGATACACAGTT-GTTTAATCAGCATATACAATTA--T-A-TT---------GTGGAATTGAATATGCAATATATCAGATATTTAAGAAACAA-AACTG-TAAGGCTACTTTT-GGAGTTGAtttactgaacgggttagttgttccgttcagtttacaatcagtttataatcatccaattaaatagcaataatggatacacagttgtttaatcagcatatacaattatattgtggaattgaatatgcaatatatcagatatttaagaaacaaaactgtaaggctacttttggagttgacgaatacgatacattgt
gi|3 : tattaatatataacttatatacactcaattacaaacgaaaccttacacttgttatttcactggtatgtcagagattaataaagggaaattaatggattttacacagaacaggatcatatcttgaaagtgactgcaactcaataactccattttcacagtcaatatcgcgtgtgaccacttcgggctgctatgcattgtacccattgtattgcacgcatcgtcactcagcctacccaactgttatttgttgctggtcaacgtgtcttgtgattgtttttatactgaacaagtgctgaaatcatgagtgcaacattttttcacgtgcagtgcatgagaagctgagggtgggcgaatggtatgtttcgcaatagtcgtgcattgcgtgcgtgacaaacatttactgaacgggttagttgttccgttcagtttacaatcagtttTTAACGTAT--ACATATAAT-----G-TACGCTCAACTCCTCAA-CTAACCTTAC-ACCTT-T-TATCTCACT---TGTAA-AT--C----A----TT-----A----AT--------------------------------------------------------T-----T---G-TACCCAT---AAGAAAA------TCA--TGTCTA-TTT-T-GA-TAAAATGCCAAG-A--TAT----AACA-AA-----AGTTCATTG--AAAGCATTTCGACTTATTTGATCTTAAAAATGACT---ACCCAATTACTCCATTTTTACA-TCAGTATC-GCTTGTGGCC---ACCGCG---GGT-TGCT----AT----------CCAT--------------T--------------ACACGCATCGTCACTCAATCTGCTAAT-CTGTTAGTTGT----TTCTG-TTAACTTTTCTAGTGA---T--T-T--TT---A-TACTGAACATGTGTTGTTACTATGA------GTGCAACAT-TTG-G-T-CACGTGCCATACATAATA-GGTCGAGAGCGGGCGAATAGTATGTTTCGCAATATTTG-GCG-T---TGCGTGCGTGCACG----GACACACAATC--CCAATTAAATGGTGACAATGGATACACAGAT-GATAATTCAGCATA---AAT-A--T-A-TT--TTT----ATGAAATTGGATATGCAATGTAACAAATGTTTAGGAAACAA-AACTG-TAAGGTTTCTTTT-GGAATCGAATGGAGG--AGGT--TTGAACATTT----ATATTCATTTATGTGTTTcgaatacgatacattgt
gi|4 : GAAATAATAAGTGGTAAGGTTTCTTTTTGGAATCGAGTGTA-GCCAGATTCCTGT-CATTTCAAAATATTAA-GTATGTATTTgt
gi|4 : aatacttatta-TACACTCGATTCCAAAAAGAAACCTTACCACTTA-T-TATTTCACG---TGTAT-GC--C----A----GA-----A----ATGAAA--GG------A--AA-----C--ATG----------------A-----C---T-----TCTTT-TACACAA---AACAAGA------TCA--TTT----TGT-T-GA-TAAAATCTCAAA-A--TTT----AACA-AA-----AGTTCATTA--ATAGCGTTTTAACT-------------------------CCTGATAACTCAATTTTGACAGTCAGTGTC-GCGTGTGGCC---ACTATGCATGACACACA----AT----------GAAC--------------T--------------GCATGCATCGTTACTCAGCCTACCGAT-CTGTTTGTTACCTAGTGCTGGTTTATTTGTCTTG-GT---T--T-TCTTT---A-TACTGAACATGTGTTGTAACCATGA------GTGCAACATGTTT-T-T-CACGTGCAATTCATGATT-GGCCGAGAGCAGGCGAATCTTATATTTCGCAATATAC------T---AGTATGTGTGCACA----GACACACAATC--C---------AGT--CCATGTATAC---G----------CAGCATA---AAT-A--T-A-TC--TTTTTGAATGAAATTGGATATGCAATGTTACTTATATTCAGGAAACAC-AACTG-TCAGCTTTCTTTT-AGAGTTGAGTGTA-acgtgtatgccagaaatgaaaggaaacatgacttcttttacacaaaacaagatcattttgttgataaaatctcaaaatttaacaaaagttcattaatagcgttttaactcctgataactcaattttgacagtcagtgtcgcgtgtggccactatgcatgacacacaatgaactgcatgcatcgttactcagcctaccgatctgtttgttacctagtgctggtttatttgtcttggttttctttatactgaacatgtgttgtaaccatgagtgcaacatgtttttcacgtgcaattcatgattggccgagagcaggcgaatcttatatttcgcaatatactagtatgtgtgcacagacacacaatccagtccatgtatacgcagcataaatatatctttttgaatgaaattggatatgcaatgttacttatattcaggaaacacaactgtcagctttcttttagagttgagtgtatgtatgcccagttgaa
gi|5 : aatacttattaaaatacatacttaatattttgaaatgacaggaatctggcCTTAC-ACTTT-T-TATTTCACT---TGTAT-GT--TAGCAA----CTAATAAA----AT--AA--GGCATAC-A--AT-----T--G------------------A-----T---T-----T---T-TACATAC---AAC-AGA------T----TTTC-tgtatgcccagttgaa
gi|5 : aatacacataaaaaagtacatgtttaagattcaagatctcacaacgtgcatggcacatctgattgaagtacatctaaAATAAC--CGCTTTCACTGTCA-TGTCAGCGCG---CC---GACTCA---ATC-TACTTCCGAT-----------CAT--------------T--------------G-----ATCGTC--TCAGCCTATCCAT-CTGTAACTTGT----TGCTGTGTAACTTGTCTAGTGT---T--G-T--TT---T-TATCGGACATGTGTTGTAACCATGC------GTGCAATAT-TTG-T-T-CACGGAAAAGTCATGATA-TACCGAAAGTGGTCGAATTATATGTATGGCAATATTCGTGCG-A---TGCGTGCTTGCACG----GACACATACTC--CCAATTAAAT-ATGACAATGGACGCCCAGTT-GACACTTTATCATA---A-----------T--TAT----ATGCAGTC--AC-TG---TGTAACAAATACTAAGGAAAC-A-AACTG-TAAGGTTTCTTTT-CGAGTGGAGTGTA-ccgctgacccttctctcgaggtcatgcacagtcatgtataaacaccggaaatgcagaataaccgctttcactgtcatgtcagcgcgccgactcaatctacttccgatcattgatcgtctcagcctatccatctgtaacttgttgctgtgtaacttgtctagtgttgtttttatcggacatgtgttgtaaccatgcgtgcaatatttgttcacggaaaagtcatgatataccgaaagtggtcgaattatatgtatggcaatattcgtgcgatgcgtgcttgcacggacacatactcccaattaaatatgacaatggacgcccagttgacactttatcataattatatgcagtcactgtgtaacaaatactaaggaaacaaactgtaaggtttcttttcgagtggagtgtacgctacagatgaaa
gi|6 : aatacacataaaaaagtacatgtttaagattcaagatctcacaacgtgcatggcacatctgattgaagtacatctaacttacactttttatttcacttgtatgttagcaactaataaaataaggcatacaattgatttttacatacaacagattttcccgctgacccttctctcgaggtcatgcacagtcatgtataaacaccggaaatgcagTTAACACGTTGAAATATA-T-----G-TACACTGAACTC-AAAA-AATACGTTAC-ACTTT-T-TATTTCACT---TGTAT-GT--T----A----TT-----T----AT--AA--GGGGAAATA--AA-----TGAA------------------A-----T---T-----T---T-CATACAT---AACAAGA------TCA--ATTC-A-CTT-T-AAATAAATTGTCAAA-A--CAG----AACA-AA-----AGTTTGTTT--TTAGCGTTTTGACATATTTGATCTTAAATGAGAC----AACCAAT----------------TC-----C-GCATGTTGCC---GCCGCG---TGC-TGCT----AT----------GCAT--------------TGCACATCTTGCATTGCACGTATTGTAACTAAGCCTGCATAT-CTGTAAGTTTT----TGCTGGTTAACTTGTTTTGTGA---T--T-T--TTTTTA-TACTGAACATGTGCGGTAACCATGA------TTGCAA-AT-TTT-T--------------CATAAC----------GCGTGCGAATCGTATATTTTGATATATTCGTGCG-T---TACGTTCGTGCATG----GACATACAATT--TCAATTAAATGCTGGCAATGAGTACACAGTT-GACAATTCAGCATA---AAT-A--T-A-TT--TTTG---ATGAAATTGGAAATGCAATGTAAAATATATCT---AAACAT-AACTG-TACGGTTTCTCTT-GAAATTGAGTGTA-----------TATA----T----ATA-CAA-ATATGTGTcgctacagatgaaa
gi|7 : gctat-T-----A-CATACTAAACTCCAAAA-GAAACTTTAC-ACTTT-T-TATTTCACT---TGTAT-GT--C----AGAGATT-----G----AT--AAAAGG------A--AA-----T--A------------------AATCAGT---T-----T---T-TACACAT---AA---GA------TAA--TTTC-A-TTT-TTAA-TAAAATGTCGAA-ACTTATCGTGAACACAACT---AGATCATTTGTATAGCTTTTTTATTTATTTGATCTTAAAGGTGACT---ACCCAATAACTGCATTTTCACAGTCAATATT-GCGCGTGCCC---ACCATG---GGC-TGTT----GT----------GTAT--------------TACACGCATTGTATTGCATGCATTTTCACCCAGCCTACCCAT-CTGTAAGTTGT----TGCATGTTAACTT--------------------TT---A-TACTGAACAT----T-TAACCATGA------GTGCAACAT-TTT-T-T-CACATGCAATTCATTATG-GATCGAGCGCGGGCGAATCCTATGTTTCACAATAATCATGCA-T---TGCGTGGGTG------------CACAATC--CCATTTAAATGTTGGCAATGGATACACAGTT-TATAATTCAGTATA---AAT-A--T-AGTT--TTTTA--ATGACATTAGATATGCAATGTAACAGATATTTAGAAAA-AA-AAC---TAAGGTTTCTTTT-GGAGTTGA
gi|8 : ATAT--ATATGTA-T-----A-TATACT-AATGCCAAAC-AAAAATTTAT-ACCTT-T-TTTGCCACT---TGTAT-GT--CCGAAA----CT-----A----ATCAAG--GG------A--AA-----C--A------------------A-----T---GAAGA-T---T-TACATAT---AACAAAA------TCAA-TTTA-A-TGA-C-AA-TTAAATGTAAAA-A--CAT----AAGA-AA-----AGTGCATTC--ATAGCATTT--ATATATTTGATCTTAAAAGTGACT---ACCCAGTAACTCCATTTTCATAGTCAGTATC-GCGTGTCGCC---ACCGCT---GAC-CGCT----AT----------GCAT--------------T--------------GCAC---TTGTCA--------ACCCAT-CTGTTAGTTGT----TGCTGATTAACTTGTCTTGTGA---T--TGT--TT---AATACTTAACAAGGGTAGTAACCAGGA------GTGCAACAT-TTT-T---CACCTGCGATTCATGATA-AGCTAATAGCGGGCGAATCGTATATTTCGCAATATATATGCA-G---AGCGTATATGCACG----GACACACAATC--CCACTTAAATGATAGCAATTGATACTCAATT-GATAATCCAGCATA---AAT-A--G-C-GT--TTA----ATGAACTT
gi|9 : gtcgtgttgcagTG-T-----A-TAGAGTCAATTCGTAAA-TA----TT-C-ACTTTATATATTTCACT---TGTAT-GA--C----AGAGATT-----A----ATC-AA--GGC-----A--AA-----T--ACATG--------------A-----T---T-----T---TTTACACAT---AACAAAA------TCA--TTTC-G-TTT-T-TA-TTAAATATCAAA-A--TAA----AACA-AA-----TGTTAATTT--ATAGCGTTTTGACATAATTGAATTTAAAAGTA------ACCTAGTTACTTCATTTTCACATCCAATATC-GCGTGTGGACTAGATTAC------C-T-CT----CTC---------ACAT--------------C--------------CCA-ACATTG--ATTGTGTTT---CAT-CTTTTAGTTGT----TGCTGGTTAACTACTCTTATGA---TTGT-T--TT---A-TACTGAACATTTGATGTAACCATGA------ATGCAACA--TTT-T-T-CACGTGCAATTCAT-----GGTCAGTAGCGAGCGAcaagttgtttctgtcggagttgaggagttgagtgta
gi|9 : tatctatttaaacatcgccatttgtAAATAAATAGTGGCAATGAATACCCAATTTGATAAATCAGCATA---GAT-A--T-AATT--GTTCA--ATTAAATTAGTTACGCAATGTAACAACTATTTTGAAAATAA-AActtaaaatatataataaatataaaataaatagtggcaatgaatacccaatttgataaatcagcatagatataattgttcaattaaattagttacgcaatgtaacaactattttgaaaataaaa
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 11111 1111111111 55555555555555555555555555555 11111111 111 2222 7777777777 2222 11
lowQualScore : 99 7 0 4 11111 3 1 3 0 0 3 3 5 555 3 44 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666 555 3 555 0 888888 77 33 3 3 0 3 3 55 7777 3 44444 55 1 8888 4 222 2 3 1 555 1 6666 3 7777 7777777777 66666666666666666666666666666 1 0 3 1 6666 1 5 00000000 33 333 2 888888 3 3 444 1 2 3 555 0 6666 44 3 2 555 2 33 888 66 5555 0 3 1 3 3 3 3333333333 55 1111 33 1
lowQualScore : .. . . . ..... . . . . . . . . ... . .. ..................................................................................... ... . ... . ...... .. .. . . . . . .. .... . ..... .. . .... . ... . . . ... . .... . .... .......... ............................. . . . . .... . . ........ .. ... . ...... . . ... . . . ... . .... .. . . ... . .. ... .. .... . . . . . . .......... .. .... .. .
lowQualScore : 22 5 1 4 11111 6 4 6 2 2 3 1 7 000 1 22 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888 444 1 444 8 888888 33 22 6 6 9 6 6 00 7777 6 11111 00 2 9999 2 777 8 3 8 888 6 8888 3 1111 9999999999 55555555555555555555555555555 2 5 1 9 5555 4 4 11111111 99 999 9 888888 1 1 777 2 9 1 444 8 5555 22 6 9 000 9 99 888 33 7777 7 8 4 1 3 3 8888888888 88 2222 22 0
consensus : TTAACATAT--ANATATA-T-----A-TACACTCAACTCCAAAA-GAAACCTTAC-ACTTT-T-TATTTCACT---TGTAT-GT--C----A----TT-----A----AT--AA--GG------A--AA-----T--A------------------A-----T---T-----T---T-TACACAT---AACAAGA------TCA--TTTC-A-TTT-T-AA-TAAAATGTCAAA-A--TAT----AACA-AA-----AGTTCATTT--ATAGCGTTTTGACTTATTTGATCTTAAAAGTGACT---ACCCAATNACTCCATTTTCACAGTCAATATC-GCGTGTGGCC---ACCGCG---GGC-TGCT----AT----------GCAT--------------T--------------GCACGCATCGTCACTCAGCCTACCCAT-CTGTTAGTTGT----TGCTGGTTAACTTGTCTTGTGA---T--T-T--TT---A-TACTGAACATGTGTTGTAACCATGA------GTGCAACAT-TTT-T-T-CACGTGCAATTCATGATA-GGCCGAGAGCGGGCGAATCGTATGTTTCGCAATATTCGTGCG-T---TGCGTGCGTGCACG----GACACACAATC--CCAATTAAATGGTGGCAATGGATACCCAGTT-GATAATTCAGCATA---AAT-A--T-A-TT--TTT----ATGAAATTGGATATGCAATGTAACAGATATTTAGGAAACAA-AACTG-TAAGGTTTCTTTT-GGAGTTGAGTGTAG--GG-TCCCTGTACATTT----ATA-TCAANTATGTGTTT
Reference ( family-1101 ) : TTAACATAT--ANATATA-T-----A-TACACTCAACTCCAAAA-GAAACCTTAC-ACTTT-T-TATTTCACT---TGTAT-GT--C----A----TT-----A----AT--AA--GG------A--AA-----T--A------------------A-----T---T-----T---T-TACACAT---AACAAGA------TCA--TTTC-A-TTT-T-AA-TAAAATGTCAAA-A--TAT----AACA-AA-----AGTTCATTT--ATAGCGTTTTGACTTATTTGATCTTAAAAGTGACT---ACCCAATNACTCCATTTTCACAGTCAATATC-GCGTGTGGCC---ACCGCG---GGC-TGCT----AT----------GCAT--------------T--------------GCACGCATCGTCACTCAGCCTACCCAT-CTGTTAGTTGT----TGCTGGTTAACTTGTCTTGTGA---T--T-T--TT---A-TACTGAACATGTGTTGTAACCATGA------GTGCAACAT-TTT-T-T-CACGTGCAATTCATGATA-GGCCGAGAGCGGGCGAATCGTATGTTTCGCAATATTCGTGCG-T---TGCGTGCGTGCACG----GACACACAATC--CCAATTAAATGGTGGCAATGGATACCCAGTT-GATAATTCAGCATA---AAT-A--T-A-TT--TTT----ATGAAATTGGATATGCAATGTAACAGATATTTAGGAAACAA-AACTG-TAAGGTTTCTTTT-GGAGTTGAGTGTAG--AG-TCCCTGTACATTT----ATA-TCAANTATGTGTTT
gi|1 : -TAGTCCATT---TATATAGA--C----AC---TT-----ATTTCAT--AA--GG------G--AAGATGGT--G------------------AAGT--T---T-----T---T-CATACACTCCAA-AAGAAACCTTTCACTTTTT-A-TTT-C-AC-TCTAACGTCAGAGA--TA-----AATA-AATGGAAAGTTCATTT--ATAGCGTTTTGACGTATTTGATCTTAAAAGTGATC---GTCCAAATACTC------------CAATATC-ACGTGTGGCC---ACCGCG---GGC-AGAT----TT----------ACAT--------------T--------------GCACGCATCGTCACTGAGCCTACCCAT-CTGCTAGTTGT----TGCTGGTTAATTTCTTTTGCGA---C--T-T--TTGTCA-TACTAAACATGTGTTGTAATCATGA------GTGCAAATT-TTT-T-T-CACGTGCAATTTATGATA-GGTCGAGAGCGGGCGAATCGTATGATTTGCAATTCTTGCGTG-T---TGCGTGCGCGTACG----TACACACAATC--CCAATTAAATGGTGACAGTGGTTATCCAGTT-GATAATTCATCATA---ACT-A--T-A-TTG-TTTTA--ATGAAATTGGATATACAATGTAACATATATTAAGGAAACAA-TACCG-TAAGGTATCTTTT-GGAGTTGAGTGTA
gi|1 : gTTATCATAC--A-ATATT-TCTTTAA-TACACTCAACTCCAAAA-GATACCTTAC-G-GTA-T-TGTTTC-CTTAATATAT-GTTAC----A----TT-----ttaaagaaatattgtatgataattttctctactactagttgattgttattgtgtgcagcggattgcaataacgttaaatatatcagttat
gi|10 : gtagtccatttatatagacacttatttcataagggaagatggtgaagtttttcatacactccaaaagaaacctttcactttttatttcactctaacgtcagagataaataaatggaaagttcatttatagcgttttgacgtatttgatcttaaaagtgatcgtccaaatactccaatatcacgtgtggccaccgcgggcagatttacattgcacgcatcgtcactgagcctacccatctgctagttgttgctggttaatttcttttgcgacttttgtcatactaaacatgtgttgtaatcatgagtgcaaatttttttcacgtgcaatttatgataggtcgagagcgggcgaatcgtatgatttgcaattcttgcgtgttgcgtgcgcgtacgtacacacaatcccaattaaatggtgacagtggttatccagttgataattcatcataactatattgttttaatgaaattggatatacTTT-TATATTTCGCT---TGTAA-GT--C----AGAGATT-----A----ATG-AA--GG----------------T--A------------------------T---T-----T---T-TACGCAT---AACAAGA------TCA--TCTG-A-TTTCT-AA-TAAAATGTCGAA-A--GAT----ATCA-AA-----AAATCATTA--AAAGATTTTTG-CTCATTTGATCTTAAAAGTGACT---ACCCAGTGACTCTAT------------TATC-GCGAGTG--------------------ACT----AT----------GCAT--------------T--------------GCACGTATTGttttctctactactagttgattgttattgtgtgcagcggattgcaataacgttaaatatatcagttat
gi|10 : ccagacaacaatcgcagcattttCTACTCAT-CTGTT-----------GCTTGTTAATTCTTCTTGTAA---T--T-T--TT---A-AACTGAACATGTGTTGTAACTATGAGTCACTGTGGAACAT-TTT-T-T--ACGTGCAATTCATGATA-GGC---GAACGGG-GAATCGTATAAGTAACAATATTCATGCG-T---TGTGTGTGTGAATG----GGCACACAGTC--CCAAGTAAActgacatttacacgcatgaaataaaccaccgctctgactttattctgtgagaaagcgtgttattcttgtgtcaaatctactcatctgttgcttgttaattcttcttgtaatttttaaactgaacatgtgttgtaactatgagtcactgtggaacattttttacgtgcaattcatgataggcgaacggggaatcgtataagtaacaatattcatgcgttgtgtgtgtgaatgggcacacagtcccaagtaaaag
gi|11 : ccagacaacaatcgcagcattttttttatatttcgcttgtaagtcagagattaatgaaggtatttttacgcataacaagatcatctgatttctaataaaatgtcgaaagatatcaaaaaatcattaaaagatttttgctcatttgatcttaaaagtgactacccagtgactctattatcgcgagtgactatgcattgcacgtattgctgacatttacacgcatgaaataaaccaccgctctgactttattctgtgagaaagcgtgttattcttgtgtcaaatCACCCGGC--ACCTGTGCTGC-AATTGT----TGCTGATTAACTTGTCTTGTGA---TATTGT--TT---A-TATTGAACATGTGTTGCAACTATG--------TTTTATGT-TTT-AAT-CACGATTAATCAAT-ATAAGGCCGAGAGCGAGCGAAAAGTATGTCTCGCAATATCCGTGCGGTGCGTGCGTGCGTGCACG----GACACATAATC--CCAATTAAATGCTGGTAATGGATACCCAGTA-AATAATGCTGCATA---AAT-A--TCA-TTCATTTG---ATAGAAATGGATATACAATGTAACAGATATTAAGGAAAAAA-CACTG-TAAGGTATCTTTT-GGAGTTTAATATA-------CTCTATACATTT----ATA-TCAATCAag
gi|12 : ggttgttttaatacatgacaacgGCCTACTCGT-CAGTCACTTGT----TACTGCTGAACTT---------------T-T--TA---A-TACTGAAAATGTGTTTTAACCATGA------GTGCAACGT-TTT-T-TTCGCTTGCAATTCATGGTA-GACCAAGAGTGTGCAAAGCGTATGTTTCGCAATATTCATGCA-T---TTCATGAATGCACA----GACACACAATC--CCAATTAAATGGTGACAATGGATACCCAGTT-GATAATTCAGCATA---CAT-A--TAA-TT--TTTTA--ATGAAATTTGATATGCATTGTAAAAGATTAATAGGAAACAA-AACTG-TAAGGTTTCTTTT-CAAGTTGAGTGCAG--gtaccatatcttgtatcagttcagcagatgttatacttggcttcactagtgta
gi|13 : tt-T--TT---A-TACTGAACCTGTTTTGTAACCATGA------GTGCAATAT-TTTTT-T-CACGTGCAATTTATGATA-GGTCGGAAACAGGCGAGTCGTATGTTTCGAAATATCCGTGTG-T---AGCGTGCGTGCACG----TACACACAATA--ATAGTTAAA-GGTGACACTCGATAGCCAGGT-AATAATTCAGCATA---AAT-A--T-A------------ATTAA---GGA----------AACAAATA----------------TG-TAAGGTTTCTTCT-GGAGTTCAGTGTAgttcaatgaaagaataacatcacaaatatttaataaaaaataaatttgatttttcagtt
gi|13 : tttgAAGATAT--ACCTAGA-T-----AATACACTGAACTCCAGAA-GAAACCTTAC-A-TAT-T-TGTTTC-CT---Tttatctaggtatatcttcacttagttttgttaaaaaacgttaaatattacgacagtta
gi|14 : tttgtttatactgaacctgttttgtaaccatgagtgcaatatttttttcacgtgcaatttatgataggtcggaaacaggcgagtcgtatgtttcgaaatatccgtgtgtagcgtgcgtgcacgtacacacaataatagttaaaggtgacactcgatagccaggtaataattcagcataaatataatt----A----TT-----A----AT--AAAGGG------A--AA-----T--A------------------A-----A---TGAACAT---T-TACACAT---AACAAGA------TAG--ATTC-A-TTT-TTAA-TAAAATGTCAAA-A--CAT----AACA-AA-----GGTGCATTT--ATAGCGTTTTGACTTATTTGATCTTAAAAGTGAAC---ACCAGACTACTCCATTTGCTTAGTTAATATC-GCGTATGCCC---GCCGCG---GGC-TGCT----ATGCATTGCATTGCAT--------------T--------------GCATGCATCGTCACTTAGTATACCCGT-CTGCTAGTTGT----TGCTGATTAACTTGTCTTGTGA---T--T-T--TTTG-A-TACTGAACATGTGTTGTcacttagttttgttaaaaaacgttaaatattacgacagtta
gi|15 : tcagag-TACACTCAACACCGAA--TAAACGTTAC-ACTTT-T-TTTTTTACT---TGTAT-GA--C----AGAGGTT-----A----AT--AA--AG------ATAAA-----T--A------------------AA----T---TA----T---T-TACACAT---AACACGA------TCT--TTTC-A-TTT-TGAA-TAAAATGCCAAA-T--CAT----AACA-AA-----AGTTAATTT--ATAGCATTTTGACTTTTTTGATCTCAAAAGTTACT---ACCCAATTACTCCAATGTCAAAGTCAATATC-GCAAGGGGCC---ACCACA---GGC-TACT----GT----------
gi|16 : TCATGATA-GACCGAGAGCAGGTGAATCGCATGTTTCGCAGCATTCGTGCG-T---TGTGTGTGTGCACGCACGGACACGCAATC--CCAATTAAATGGTGGCAGTAGATACACAGTT-GATAATTCAG-------AAT-A--T-T-TT--TTT----
gi|17 : tcttaaaccgaaacacgatctatgtgtaacttgctatcggacaataaatcactcaaaattagtttaatacgacattaATG-C-----A-TACACTCATCTCTAAAA-GGAACTTTAC-ACTTT-T-TATTTGACT---CGGAT-GG--CCGATA----TT-----A----AT--AAAGGG------A--AA-----T--ATATTGATTTTACACATATA-----T---TAAT--T---T-TACACAT---AATAAGA------TCA--TTTT-ATTTT-T-AA-TAAAATGTCAAA-A--TAT----AACA-AA-----ATTTTATTT--ATAttttttatgaa
gi|18 : aaaagatatttaactcT--TTA----ATGCAATTGAATATGAAATGTAAGAGATATT-AAGAAATAA-AACTG-TTAGGTTTCTTTC-TGAGTTTAGTGTA
gi|19 : CCAGTT-GATAATTCAGCATA---AAT-AAAT-G-TT--GTT----ATGATATTGGATATGCAATGTAGCCGATATTTAGGAtattaacagtatacaggtagatttgttctactattgttta
gi|2 : TTAATATAT--AACT-TA-T-----A-TACACTCAATTACAAAC-GAAACCTTAC-ACTTG-T-TATTTCACT---GGTAT-GT--CAGAGA----TT-----A----AT--AAAGGG------A--AAT----T--A------------------A-----TGGAT-----T---T-TACACAG---AACAGGA------TCA--TATC-
gi|2 : taATCTTGAAAGTGACTGCAACTCAATAACTCCATTTTCACAGTCAATATC-GCGTGTGACC---ACTTCG---GGC-TGCT----AT----------GCATTGTACCCATTGTATT--------------GCACGCATCGTCACTCAGCCTACCCAA-CTGTTATTTGT----TGCTGGTCAACGTGTCTTGTGATTGT--T-T--TT---A-TACTGAACAAGTGCTGAAATCATGA------GTGCAACAT-TTT-T-T-CACGTGCAGTGCATGAGA-AGCTGAGGGTGGGCGAATGGTATGTTTCGCAATAGTCGTGCA-T---TGCGTGCGTG-ACA----AACAttgaaagtgactgcaactcaataactccattttcacagtcaatatcgcgtgtgaccacttcgggctgctatgcattgtacccattgtattgcacgcatcgtcactcagcctacccaactgttatttgttgctggtcaacgtgtcttgtgattgtttttatactgaacaagtgctgaaatcatgagtgcaacattttttcacgtgcagtgcatgagaagctgagggtgggcgaatggtatgtttcgcaatagtcgtgcattgcgtgcgtgacaaacatttactgaacgggttagttgttccgttcagtttacaatcagtttataatcatccaattaaatagcaataatggatacacagttgtttaatcagcatatacaattatattgtggaattgaatatgcaatatatcagatatttaagaaacaaaactgtaaggctacttttggagttgacgaatacgatacattgt
gi|2 : tattaatatataacttatatacactcaattacaaacgaaaccttacacttgttatttcactggtatgtcagagattaataaagggaaattaatggattttacacagaacaggatcatATAATCATCCAATTAAATAGCAATAATGGATACACAGTT-GTTTAATCAGCATATACAATTA--T-A-TT---------GTGGAATTGAATATGCAATATATCAGATATTTAAGAAACAA-AACTG-TAAGGCTACTTTT-GGAGTTGAtttactgaacgggttagttgttccgttcagtttacaatcagtttataatcatccaattaaatagcaataatggatacacagttgtttaatcagcatatacaattatattgtggaattgaatatgcaatatatcagatatttaagaaacaaaactgtaaggctacttttggagttgacgaatacgatacattgt
gi|3 : tattaatatataacttatatacactcaattacaaacgaaaccttacacttgttatttcactggtatgtcagagattaataaagggaaattaatggattttacacagaacaggatcatatcttgaaagtgactgcaactcaataactccattttcacagtcaatatcgcgtgtgaccacttcgggctgctatgcattgtacccattgtattgcacgcatcgtcactcagcctacccaactgttatttgttgctggtcaacgtgtcttgtgattgtttttatactgaacaagtgctgaaatcatgagtgcaacattttttcacgtgcagtgcatgagaagctgagggtgggcgaatggtatgtttcgcaatagtcgtgcattgcgtgcgtgacaaacatttactgaacgggttagttgttccgttcagtttacaatcagtttTTAACGTAT--ACATATAAT-----G-TACGCTCAACTCCTCAA-CTAACCTTAC-ACCTT-T-TATCTCACT---TGTAA-AT--C----A----TT-----A----AT--------------------------------------------------------T-----T---G-TACCCAT---AAGAAAA------TCA--TGTCTA-TTT-T-GA-TAAAATGCCAAG-A--TAT----AACA-AA-----AGTTCATTG--AAAGCATTTCGACTTATTTGATCTTAAAAATGACT---ACCCAATTACTCCATTTTTACA-TCAGTATC-GCTTGTGGCC---ACCGCG---GGT-TGCT----AT----------CCAT--------------T--------------ACACGCATCGTCACTCAATCTGCTAAT-CTGTTAGTTGT----TTCTG-TTAACTTTTCTAGTGA---T--T-T--TT---A-TACTGAACATGTGTTGTTACTATGA------GTGCAACAT-TTG-G-T-CACGTGCCATACATAATA-GGTCGAGAGCGGGCGAATAGTATGTTTCGCAATATTTG-GCG-T---TGCGTGCGTGCACG----GACACACAATC--CCAATTAAATGGTGACAATGGATACACAGAT-GATAATTCAGCATA---AAT-A--T-A-TT--TTT----ATGAAATTGGATATGCAATGTAACAAATGTTTAGGAAACAA-AACTG-TAAGGTTTCTTTT-GGAATCGAATGGAGGAGG-T--TTGAACATTT----ATATTCATTTATGTGTTTcgaatacgatacattgt
gi|4 : GAAATAATAAGTGGTAAGGTTTCTTTTTGGAATCGAGTGTAGCCAGATTCCTGT-CATTTCAAAATA-TTAAGTATGTATTTgt
gi|4 : aatacttatta-TACACTCGATTCCAAAAAGAAACCTTACCACTTA-T-TATTTCACG---TGTAT-GC--C----A----GA-----A----ATGAAA--GG------A--AA-----C--ATG----------------A-----C---T-----TCTTT-TACACAA---AACAAGA------TCA--TTT----TGT-T-GA-TAAAATCTCAAA-A--TTT----AACA-AA-----AGTTCATTA--ATAGCGTTTTAACT-------------------------CCTGATAACTCAATTTTGACAGTCAGTGTC-GCGTGTGGCC---ACTATGCATGACACACA----AT----------GAAC--------------T--------------GCATGCATCGTTACTCAGCCTACCGAT-CTGTTTGTTACCTAGTGCTGGTTTATTTGTCTTG-GT---T--T-TCTTT---A-TACTGAACATGTGTTGTAACCATGA------GTGCAACATGTTT-T-T-CACGTGCAATTCATGATT-GGCCGAGAGCAGGCGAATCTTATATTTCGCAATATAC------T---AGTATGTGTGCACA----GACACACAATC--C---------AGT--CCATGTATAC---G----------CAGCATA---AAT-A--T-A-TC--TTTTTGAATGAAATTGGATATGCAATGTTACTTATATTCAGGAAACAC-AACTG-TCAGCTTTCTTTT-AGAGTTGAGTGTAacgtgtatgccagaaatgaaaggaaacatgacttcttttacacaaaacaagatcattttgttgataaaatctcaaaatttaacaaaagttcattaatagcgttttaactcctgataactcaattttgacagtcagtgtcgcgtgtggccactatgcatgacacacaatgaactgcatgcatcgttactcagcctaccgatctgtttgttacctagtgctggtttatttgtcttggttttctttatactgaacatgtgttgtaaccatgagtgcaacatgtttttcacgtgcaattcatgattggccgagagcaggcgaatcttatatttcgcaatatactagtatgtgtgcacagacacacaatccagtccatgtatacgcagcataaatatatctttttgaatgaaattggatatgcaatgttacttatattcaggaaacacaactgtcagctttcttttagagttgagtgtatgtatgcccagttgaa
gi|5 : aatacttattaaaatacatacttaatattttgaaatgacaggaatctggcCTTAC-ACTTT-T-TATTTCACT---TGTAT-GT--TAGCAA----CTAATAAA----AT--AA--GGCATAC-A--AT-----T--G------------------A-----T---T-----T---T-TACATAC---AAC-AGA------T----TTTC-tgtatgcccagttgaa
gi|5 : aatacacataaaaaagtacatgtttaagattcaagatctcacaacgtgcatggcacatctgattgaagtacatctaaAATAAC--CGCTTTCACTGTCA-TGTCAGCGCG---CC---GACTCA---ATC-TACTTCCGAT-----------CAT--------------T--------------G-----ATCGTC--TCAGCCTATCCAT-CTGTAACTTGT----TGCTGTGTAACTTGTCTAGTGT---T--G-T--TT---T-TATCGGACATGTGTTGTAACCATGC------GTGCAATAT-TTG-T-T-CACGGAAAAGTCATGATA-TACCGAAAGTGGTCGAATTATATGTATGGCAATATTCGTGCG-A---TGCGTGCTTGCACG----GACACATACTC--CCAATTAAAT-ATGACAATGGACGCCCAGTT-GACACTTTATCATA---A-----------T--TAT----ATGCAGTC--AC-TG---TGTAACAAATACTAAGGAAAC-A-AACTG-TAAGGTTTCTTTT-CGAGTGGAGTGTAccgctgacccttctctcgaggtcatgcacagtcatgtataaacaccggaaatgcagaataaccgctttcactgtcatgtcagcgcgccgactcaatctacttccgatcattgatcgtctcagcctatccatctgtaacttgttgctgtgtaacttgtctagtgttgtttttatcggacatgtgttgtaaccatgcgtgcaatatttgttcacggaaaagtcatgatataccgaaagtggtcgaattatatgtatggcaatattcgtgcgatgcgtgcttgcacggacacatactcccaattaaatatgacaatggacgcccagttgacactttatcataattatatgcagtcactgtgtaacaaatactaaggaaacaaactgtaaggtttcttttcgagtggagtgtacgctacagatgaaa
gi|6 : aatacacataaaaaagtacatgtttaagattcaagatctcacaacgtgcatggcacatctgattgaagtacatctaacttacactttttatttcacttgtatgttagcaactaataaaataaggcatacaattgatttttacatacaacagattttcccgctgacccttctctcgaggtcatgcacagtcatgtataaacaccggaaatgcagTTAACACGTTGAAATATA-T-----G-TACACTGAACTC-AAAA-AATACGTTAC-ACTTT-T-TATTTCACT---TGTAT-GT--T----A----TT-----T----AT--AA--GGGGAAATA--AA-----TGAA------------------A-----T---T-----T---T-CATACAT---AACAAGA------TCA--ATTC-A-CTT-T-AAATAAATTGTCAAA-A--CAG----AACA-AA-----AGTTTGTTT--TTAGCGTTTTGACATATTTGATCTTAAATGAGAC----AACCAAT----------------TC-----C-GCATGTTGCC---GCCGCG---TGC-TGCT----AT----------GCAT--------------TGCACATCTTGCATTGCACGTATTGTAACTAAGCCTGCATAT-CTGTAAGTTTT----TGCTGGTTAACTTGTTTTGTGA---T--T-T--TTTTTA-TACTGAACATGTGCGGTAACCATGA------TTGCAA-AT-TTT-T--------------CATAAC----------GCGTGCGAATCGTATATTTTGATATATTCGTGCG-T---TACGTTCGTGCATG----GACATACAATT--TCAATTAAATGCTGGCAATGAGTACACAGTT-GACAATTCAGCATA---AAT-A--T-A-TT--TTTG---ATGAAATTGGAAATGCAATGTAAAATATATCT---AAACAT-AACTG-TACGGTTTCTCTT-GAAATTGAGTGTA----------TATA----T----ATA--CAAATATGTGTcgctacagatgaaa
gi|7 : gctat-T-----A-CATACTAAACTCCAAAA-GAAACTTTAC-ACTTT-T-TATTTCACT---TGTAT-GT--C----AGAGATT-----G----AT--AAAAGG------A--AA-----T--A------------------AATCAGT---T-----T---T-TACACAT---AA---GA------TAA--TTTC-A-TTT-TTAA-TAAAATGTCGAA-ACTTATCGTGAACACAACT---AGATCATTTGTATAGCTTTTTTATTTATTTGATCTTAAAGGTGACT---ACCCAATAACTGCATTTTCACAGTCAATATT-GCGCGTGCCC---ACCATG---GGC-TGTT----GT----------GTAT--------------TACACGCATTGTATTGCATGCATTTTCACCCAGCCTACCCAT-CTGTAAGTTGT----TGCATGTTAACTT--------------------TT---A-TACTGAACAT----T-TAACCATGA------GTGCAACAT-TTT-T-T-CACATGCAATTCATTATG-GATCGAGCGCGGGCGAATCCTATGTTTCACAATAATCATGCA-T---TGCGTGGGTG------------CACAATC--CCATTTAAATGTTGGCAATGGATACACAGTT-TATAATTCAGTATA---AAT-A--T-AGTT--TTTTA--ATGACATTAGATATGCAATGTAACAGATATTTAGAAAA-AA-AAC---TAAGGTTTCTTTT-GGAGTTGA
gi|8 : ATAT--ATATGTA-T-----A-TATACT-AATGCCAAAC-AAAAATTTAT-ACCTT-T-TTTGCCACT---TGTAT-GT--CCGAAA----CT-----A----ATCAAG--GG------A--AA-----C--A------------------A-----T---GAAGA-T---T-TACATAT---AACAAAA------TCAA-TTTA-A-TGA-C-AA-TTAAATGTAAAA-A--CAT----AAGA-AA-----AGTGCATTC--ATAGCATTT--ATATATTTGATCTTAAAAGTGACT---ACCCAGTAACTCCATTTTCATAGTCAGTATC-GCGTGTCGCC---ACCGCT---GAC-CGCT----AT----------GCAT--------------T--------------GCAC---TTGTCA--------ACCCAT-CTGTTAGTTGT----TGCTGATTAACTTGTCTTGTGA---T--TGT--TT---AATACTTAACAAGGGTAGTAACCAGGA------GTGCAACAT-TTT-T---CACCTGCGATTCATGATA-AGCTAATAGCGGGCGAATCGTATATTTCGCAATATATATGCA-G---AGCGTATATGCACG----GACACACAATC--CCACTTAAATGATAGCAATTGATACTCAATT-GATAATCCAGCATA---AAT-A--G-C-GT--TTA----ATGAACTT
gi|9 : gtcgtgttgcagTG-T-----A-TAGAGTCAATTCGTAAA-TA----TT-C-ACTTTATATATTTCACT---TGTAT-GA--C----AGAGATT-----A----ATC-AA--GGC-----A--AA-----T--ACATG--------------A-----T---T-----T---TTTACACAT---AACAAAA------TCA--TTTC-G-TTT-T-TA-TTAAATATCAAA-A--TAA----AACA-AA-----TGTTAATTT--ATAGCGTTTTGACATAATTGAATTTAAAAGTA------ACCTAGTTACTTCATTTTCACATCCAATATC-GCGTGTGGACTAGATTAC------C-T-CT----CTC---------ACAT--------------C--------------CCA-ACATTG--ATTGTGTTT---CAT-CTTTTAGTTGT----TGCTGGTTAACTACTCTTATGA---TTGT-T--TT---A-TACTGAACATTTGATGTAACCATGA------ATGCAACA--TTT-T-T-CACGTGCAATTCAT-----GGTCAGTAGCGAGCGAcaagttgtttctgtcggagttgaggagttgagtgta
gi|9 : tatctatttaaacatcgccatttgtAAATAAATAGTGGCAATGAATACCCAATTTGATAAATCAGCATA---GAT-A--T-AATT--GTTCA--ATTAAATTAGTTACGCAATGTAACAACTATTTTGAAAATAA-AActtaaaatatataataaatataaaataaatagtggcaatgaatacccaatttgataaatcagcatagatataattgttcaattaaattagttacgcaatgtaacaactattttgaaaataaaa
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 11111 1111111111 55555555555555555555555555555 11111111 111 2222 5555555555 2222 11
lowQualScore : 99 7 0 4 11111 3 1 3 0 0 3 3 5 555 3 44 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666 555 3 555 0 888888 77 33 3 3 0 3 3 55 7777 3 44444 55 1 8888 4 222 2 3 1 555 1 6666 3 7777 7777777777 66666666666666666666666666666 1 0 3 1 6666 1 5 00000000 33 333 2 888888 3 3 444 1 2 3 555 0 6666 44 3 2 555 2 33 888 66 5555 0 3 1 3 3 3 8888888888 55 1111 33 1
lowQualScore : .. . . . ..... . . . . . . . . ... . .. ..................................................................................... ... . ... . ...... .. .. . . . . . .. .... . ..... .. . .... . ... . . . ... . .... . .... .......... ............................. . . . . .... . . ........ .. ... . ...... . . ... . . . ... . .... .. . . ... . .. ... .. .... . . . . . . .......... .. .... .. .
lowQualScore : 22 5 1 4 11111 6 4 6 2 2 3 1 7 000 1 22 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888 444 1 444 8 888888 33 22 6 6 9 6 6 00 7777 6 11111 00 2 9999 2 777 8 3 8 888 6 8888 3 1111 9999999999 55555555555555555555555555555 2 5 1 9 5555 4 4 11111111 99 999 9 888888 1 1 777 2 9 1 444 8 5555 22 6 9 000 9 99 888 33 7777 7 8 4 1 3 3 7777777777 88 2222 22 0
consensus : TTAACATAT--ANATATA-T-----A-TACACTCAACTCCAAAA-GAAACCTTAC-ACTTT-T-TATTTCACT---TGTAT-GT--C----A----TT-----A----AT--AA--GG------A--AA-----T--A------------------A-----T---T-----T---T-TACACAT---AACAAGA------TCA--TTTC-A-TTT-T-AA-TAAAATGTCAAA-A--TAT----AACA-AA-----AGTTCATTT--ATAGCGTTTTGACTTATTTGATCTTAAAAGTGACT---ACCCAATNACTCCATTTTCACAGTCAATATC-GCGTGTGGCC---ACCGCG---GGC-TGCT----AT----------GCAT--------------T--------------GCACGCATCGTCACTCAGCCTACCCAT-CTGTTAGTTGT----TGCTGGTTAACTTGTCTTGTGA---T--T-T--TT---A-TACTGAACATGTGTTGTAACCATGA------GTGCAACAT-TTT-T-T-CACGTGCAATTCATGATA-GGCCGAGAGCGGGCGAATCGTATGTTTCGCAATATTCGTGCG-T---TGCGTGCGTGCACG----GACACACAATC--CCAATTAAATGGTGGCAATGGATACCCAGTT-GATAATTCAGCATA---AAT-A--T-A-TT--TTT----ATGAAATTGGATATGCAATGTAACAGATATTTAGGAAACAA-AACTG-TAAGGTTTCTTTT-GGAGTTGAGTGTAG---G-TCCCTGTACATTT----ATA-TCAANTATGTGTTT
Reference ( family-1101 ) : TTAACATAT--ANATATA-T-----A-TACACTCAACTCCAAAA-GAAACCTTAC-ACTTT-T-TATTTCACT---TGTAT-GT--C----A----TT-----A----AT--AA--GG------A--AA-----T--A------------------A-----T---T-----T---T-TACACAT---AACAAGA------TCA--TTTC-A-TTT-T-AA-TAAAATGTCAAA-A--TAT----AACA-AA-----AGTTCATTT--ATAGCGTTTTGACTTATTTGATCTTAAAAGTGACT---ACCCAATNACTCCATTTTCACAGTCAATATC-GCGTGTGGCC---ACCGCG---GGC-TGCT----AT----------GCAT--------------T--------------GCACGCATCGTCACTCAGCCTACCCAT-CTGTTAGTTGT----TGCTGGTTAACTTGTCTTGTGA---T--T-T--TT---A-TACTGAACATGTGTTGTAACCATGA------GTGCAACAT-TTT-T-T-CACGTGCAATTCATGATA-GGCCGAGAGCGGGCGAATCGTATGTTTCGCAATATTCGTGCG-T---TGCGTGCGTGCACG----GACACACAATC--CCAATTAAATGGTGGCAATGGATACCCAGTT-GATAATTCAGCATA---AAT-A--T-A-TT--TTT----ATGAAATTGGATATGCAATGTAACAGATATTTAGGAAACAA-AACTG-TAAGGTTTCTTTT-GGAGTTGAGTGTAG---GGTCCCTGTACATTT----ATA-TCAANTATGTGTTT
gi|1 : -TAGTCCATT---TATATAGA--C----AC---TT-----ATTTCAT--AA--GG------G--AAGATGGT--G------------------AAGT--T---T-----T---T-CATACACTCCAA-AAGAAACCTTTCACTTTTT-A-TTT-C-AC-TCTAACGTCAGAGA--TA-----AATA-AATGGAAAGTTCATTT--ATAGCGTTTTGACGTATTTGATCTTAAAAGTGATC---GTCCAAATACTC------------CAATATC-ACGTGTGGCC---ACCGCG---GGC-AGAT----TT----------ACAT--------------T--------------GCACGCATCGTCACTGAGCCTACCCAT-CTGCTAGTTGT----TGCTGGTTAATTTCTTTTGCGA---C--T-T--TTGTCA-TACTAAACATGTGTTGTAATCATGA------GTGCAAATT-TTT-T-T-CACGTGCAATTTATGATA-GGTCGAGAGCGGGCGAATCGTATGATTTGCAATTCTTGCGTG-T---TGCGTGCGCGTACG----TACACACAATC--CCAATTAAATGGTGACAGTGGTTATCCAGTT-GATAATTCATCATA---ACT-A--T-A-TTG-TTTTA--ATGAAATTGGATATACAATGTAACATATATTAAGGAAACAA-TACCG-TAAGGTATCTTTT-GGAGTTGAGTGTA
gi|1 : gTTATCATAC--A-ATATT-TCTTTAA-TACACTCAACTCCAAAA-GATACCTTAC-G-GTA-T-TGTTTC-CTTAATATAT-GTTAC----A----TT-----ttaaagaaatattgtatgataattttctctactactagttgattgttattgtgtgcagcggattgcaataacgttaaatatatcagttat
gi|10 : gtagtccatttatatagacacttatttcataagggaagatggtgaagtttttcatacactccaaaagaaacctttcactttttatttcactctaacgtcagagataaataaatggaaagttcatttatagcgttttgacgtatttgatcttaaaagtgatcgtccaaatactccaatatcacgtgtggccaccgcgggcagatttacattgcacgcatcgtcactgagcctacccatctgctagttgttgctggttaatttcttttgcgacttttgtcatactaaacatgtgttgtaatcatgagtgcaaatttttttcacgtgcaatttatgataggtcgagagcgggcgaatcgtatgatttgcaattcttgcgtgttgcgtgcgcgtacgtacacacaatcccaattaaatggtgacagtggttatccagttgataattcatcataactatattgttttaatgaaattggatatacTTT-TATATTTCGCT---TGTAA-GT--C----AGAGATT-----A----ATG-AA--GG----------------T--A------------------------T---T-----T---T-TACGCAT---AACAAGA------TCA--TCTG-A-TTTCT-AA-TAAAATGTCGAA-A--GAT----ATCA-AA-----AAATCATTA--AAAGATTTTTG-CTCATTTGATCTTAAAAGTGACT---ACCCAGTGACTCTAT------------TATC-GCGAGTG--------------------ACT----AT----------GCAT--------------T--------------GCACGTATTGttttctctactactagttgattgttattgtgtgcagcggattgcaataacgttaaatatatcagttat
gi|10 : ccagacaacaatcgcagcattttCTACTCAT-CTGTT-----------GCTTGTTAATTCTTCTTGTAA---T--T-T--TT---A-AACTGAACATGTGTTGTAACTATGAGTCACTGTGGAACAT-TTT-T-T--ACGTGCAATTCATGATA-GGC---GAACGGG-GAATCGTATAAGTAACAATATTCATGCG-T---TGTGTGTGTGAATG----GGCACACAGTC--CCAAGTAAActgacatttacacgcatgaaataaaccaccgctctgactttattctgtgagaaagcgtgttattcttgtgtcaaatctactcatctgttgcttgttaattcttcttgtaatttttaaactgaacatgtgttgtaactatgagtcactgtggaacattttttacgtgcaattcatgataggcgaacggggaatcgtataagtaacaatattcatgcgttgtgtgtgtgaatgggcacacagtcccaagtaaaag
gi|11 : ccagacaacaatcgcagcattttttttatatttcgcttgtaagtcagagattaatgaaggtatttttacgcataacaagatcatctgatttctaataaaatgtcgaaagatatcaaaaaatcattaaaagatttttgctcatttgatcttaaaagtgactacccagtgactctattatcgcgagtgactatgcattgcacgtattgctgacatttacacgcatgaaataaaccaccgctctgactttattctgtgagaaagcgtgttattcttgtgtcaaatCACCCGGC--ACCTGTGCTGC-AATTGT----TGCTGATTAACTTGTCTTGTGA---TATTGT--TT---A-TATTGAACATGTGTTGCAACTATG--------TTTTATGT-TTT-AAT-CACGATTAATCAAT-ATAAGGCCGAGAGCGAGCGAAAAGTATGTCTCGCAATATCCGTGCGGTGCGTGCGTGCGTGCACG----GACACATAATC--CCAATTAAATGCTGGTAATGGATACCCAGTA-AATAATGCTGCATA---AAT-A--TCA-TTCATTTG---ATAGAAATGGATATACAATGTAACAGATATTAAGGAAAAAA-CACTG-TAAGGTATCTTTT-GGAGTTTAATATA-------CTCTATACATTT----ATA-TCAATCAag
gi|12 : ggttgttttaatacatgacaacgGCCTACTCGT-CAGTCACTTGT----TACTGCTGAACTT---------------T-T--TA---A-TACTGAAAATGTGTTTTAACCATGA------GTGCAACGT-TTT-T-TTCGCTTGCAATTCATGGTA-GACCAAGAGTGTGCAAAGCGTATGTTTCGCAATATTCATGCA-T---TTCATGAATGCACA----GACACACAATC--CCAATTAAATGGTGACAATGGATACCCAGTT-GATAATTCAGCATA---CAT-A--TAA-TT--TTTTA--ATGAAATTTGATATGCATTGTAAAAGATTAATAGGAAACAA-AACTG-TAAGGTTTCTTTT-CAAGTTGAGTGCAG---GTTCgtaccatatcttgtatcagttcagcagatgttatacttggcttcactagtgta
gi|13 : tt-T--TT---A-TACTGAACCTGTTTTGTAACCATGA------GTGCAATAT-TTTTT-T-CACGTGCAATTTATGATA-GGTCGGAAACAGGCGAGTCGTATGTTTCGAAATATCCGTGTG-T---AGCGTGCGTGCACG----TACACACAATA--ATAGTTAAA-GGTGACACTCGATAGCCAGGT-AATAATTCAGCATA---AAT-A--T-A------------ATTAA---GGA----------AACAAATA----------------TG-TAAGGTTTCTTCT-GGAGTTCAGTGTAaatgaaagaataacatcacaaatatttaataaaaaataaatttgatttttcagtt
gi|13 : tttgAAGATAT--ACCTAGA-T-----AATACACTGAACTCCAGAA-GAAACCTTAC-A-TAT-T-TGTTTC-CT---Tttatctaggtatatcttcacttagttttgttaaaaaacgttaaatattacgacagtta
gi|14 : tttgtttatactgaacctgttttgtaaccatgagtgcaatatttttttcacgtgcaatttatgataggtcggaaacaggcgagtcgtatgtttcgaaatatccgtgtgtagcgtgcgtgcacgtacacacaataatagttaaaggtgacactcgatagccaggtaataattcagcataaatataatt----A----TT-----A----AT--AAAGGG------A--AA-----T--A------------------A-----A---TGAACAT---T-TACACAT---AACAAGA------TAG--ATTC-A-TTT-TTAA-TAAAATGTCAAA-A--CAT----AACA-AA-----GGTGCATTT--ATAGCGTTTTGACTTATTTGATCTTAAAAGTGAAC---ACCAGACTACTCCATTTGCTTAGTTAATATC-GCGTATGCCC---GCCGCG---GGC-TGCT----ATGCATTGCATTGCAT--------------T--------------GCATGCATCGTCACTTAGTATACCCGT-CTGCTAGTTGT----TGCTGATTAACTTGTCTTGTGA---T--T-T--TTTG-A-TACTGAACATGTGTTGTcacttagttttgttaaaaaacgttaaatattacgacagtta
gi|15 : tcagag-TACACTCAACACCGAA--TAAACGTTAC-ACTTT-T-TTTTTTACT---TGTAT-GA--C----AGAGGTT-----A----AT--AA--AG------ATAAA-----T--A------------------AA----T---TA----T---T-TACACAT---AACACGA------TCT--TTTC-A-TTT-TGAA-TAAAATGCCAAA-T--CAT----AACA-AA-----AGTTAATTT--ATAGCATTTTGACTTTTTTGATCTCAAAAGTTACT---ACCCAATTACTCCAATGTCAAAGTCAATATC-GCAAGGGGCC---ACCACA---GGC-TACT----GT----------
gi|16 : TCATGATA-GACCGAGAGCAGGTGAATCGCATGTTTCGCAGCATTCGTGCG-T---TGTGTGTGTGCACGCACGGACACGCAATC--CCAATTAAATGGTGGCAGTAGATACACAGTT-GATAATTCAG-------AAT-A--T-T-TT--TTT----
gi|17 : tcttaaaccgaaacacgatctatgtgtaacttgctatcggacaataaatcactcaaaattagtttaatacgacattaATG-C-----A-TACACTCATCTCTAAAA-GGAACTTTAC-ACTTT-T-TATTTGACT---CGGAT-GG--CCGATA----TT-----A----AT--AAAGGG------A--AA-----T--ATATTGATTTTACACATATA-----T---TAAT--T---T-TACACAT---AATAAGA------TCA--TTTT-ATTTT-T-AA-TAAAATGTCAAA-A--TAT----AACA-AA-----ATTTTATTT--ATAttttttatgaa
gi|18 : aaaagatatttaactcT--TTA----ATGCAATTGAATATGAAATGTAAGAGATATT-AAGAAATAA-AACTG-TTAGGTTTCTTTC-TGAGTTTAGTGTA
gi|19 : CCAGTT-GATAATTCAGCATA---AAT-AAAT-G-TT--GTT----ATGATATTGGATATGCAATGTAGCCGATATTTAGGAtattaacagtatacaggtagatttgttctactattgttta
gi|2 : TTAATATAT--AACT-TA-T-----A-TACACTCAATTACAAAC-GAAACCTTAC-ACTTG-T-TATTTCACT---GGTAT-GT--CAGAGA----TT-----A----AT--AAAGGG------A--AAT----T--A------------------A-----TGGAT-----T---T-TACACAG---AACAGGA------TCA--TATC-
gi|2 : taATCTTGAAAGTGACTGCAACTCAATAACTCCATTTTCACAGTCAATATC-GCGTGTGACC---ACTTCG---GGC-TGCT----AT----------GCATTGTACCCATTGTATT--------------GCACGCATCGTCACTCAGCCTACCCAA-CTGTTATTTGT----TGCTGGTCAACGTGTCTTGTGATTGT--T-T--TT---A-TACTGAACAAGTGCTGAAATCATGA------GTGCAACAT-TTT-T-T-CACGTGCAGTGCATGAGA-AGCTGAGGGTGGGCGAATGGTATGTTTCGCAATAGTCGTGCA-T---TGCGTGCGTG-ACA----AACAttgaaagtgactgcaactcaataactccattttcacagtcaatatcgcgtgtgaccacttcgggctgctatgcattgtacccattgtattgcacgcatcgtcactcagcctacccaactgttatttgttgctggtcaacgtgtcttgtgattgtttttatactgaacaagtgctgaaatcatgagtgcaacattttttcacgtgcagtgcatgagaagctgagggtgggcgaatggtatgtttcgcaatagtcgtgcattgcgtgcgtgacaaacatttactgaacgggttagttgttccgttcagtttacaatcagtttataatcatccaattaaatagcaataatggatacacagttgtttaatcagcatatacaattatattgtggaattgaatatgcaatatatcagatatttaagaaacaaaactgtaaggctacttttggagttgacgaatacgatacattgt
gi|2 : tattaatatataacttatatacactcaattacaaacgaaaccttacacttgttatttcactggtatgtcagagattaataaagggaaattaatggattttacacagaacaggatcatATAATCATCCAATTAAATAGCAATAATGGATACACAGTT-GTTTAATCAGCATATACAATTA--T-A-TT---------GTGGAATTGAATATGCAATATATCAGATATTTAAGAAACAA-AACTG-TAAGGCTACTTTT-GGAGTTGAtttactgaacgggttagttgttccgttcagtttacaatcagtttataatcatccaattaaatagcaataatggatacacagttgtttaatcagcatatacaattatattgtggaattgaatatgcaatatatcagatatttaagaaacaaaactgtaaggctacttttggagttgacgaatacgatacattgt
gi|3 : tattaatatataacttatatacactcaattacaaacgaaaccttacacttgttatttcactggtatgtcagagattaataaagggaaattaatggattttacacagaacaggatcatatcttgaaagtgactgcaactcaataactccattttcacagtcaatatcgcgtgtgaccacttcgggctgctatgcattgtacccattgtattgcacgcatcgtcactcagcctacccaactgttatttgttgctggtcaacgtgtcttgtgattgtttttatactgaacaagtgctgaaatcatgagtgcaacattttttcacgtgcagtgcatgagaagctgagggtgggcgaatggtatgtttcgcaatagtcgtgcattgcgtgcgtgacaaacatttactgaacgggttagttgttccgttcagtttacaatcagtttTTAACGTAT--ACATATAAT-----G-TACGCTCAACTCCTCAA-CTAACCTTAC-ACCTT-T-TATCTCACT---TGTAA-AT--C----A----TT-----A----AT--------------------------------------------------------T-----T---G-TACCCAT---AAGAAAA------TCA--TGTCTA-TTT-T-GA-TAAAATGCCAAG-A--TAT----AACA-AA-----AGTTCATTG--AAAGCATTTCGACTTATTTGATCTTAAAAATGACT---ACCCAATTACTCCATTTTTACA-TCAGTATC-GCTTGTGGCC---ACCGCG---GGT-TGCT----AT----------CCAT--------------T--------------ACACGCATCGTCACTCAATCTGCTAAT-CTGTTAGTTGT----TTCTG-TTAACTTTTCTAGTGA---T--T-T--TT---A-TACTGAACATGTGTTGTTACTATGA------GTGCAACAT-TTG-G-T-CACGTGCCATACATAATA-GGTCGAGAGCGGGCGAATAGTATGTTTCGCAATATTTG-GCG-T---TGCGTGCGTGCACG----GACACACAATC--CCAATTAAATGGTGACAATGGATACACAGAT-GATAATTCAGCATA---AAT-A--T-A-TT--TTT----ATGAAATTGGATATGCAATGTAACAAATGTTTAGGAAACAA-AACTG-TAAGGTTTCTTTT-GGAATCGAATGGAGGA-GGT--TTGAACATTT----ATATTCATTTATGTGTTTcgaatacgatacattgt
gi|4 : GAAATAATAAGTGGTAAGGTTTCTTTTTGGAATCGAGTGTAGCCAGATTCCTGT-CATTTCAAAATA-TTAAGTATGTATTTgt
gi|4 : aatacttatta-TACACTCGATTCCAAAAAGAAACCTTACCACTTA-T-TATTTCACG---TGTAT-GC--C----A----GA-----A----ATGAAA--GG------A--AA-----C--ATG----------------A-----C---T-----TCTTT-TACACAA---AACAAGA------TCA--TTT----TGT-T-GA-TAAAATCTCAAA-A--TTT----AACA-AA-----AGTTCATTA--ATAGCGTTTTAACT-------------------------CCTGATAACTCAATTTTGACAGTCAGTGTC-GCGTGTGGCC---ACTATGCATGACACACA----AT----------GAAC--------------T--------------GCATGCATCGTTACTCAGCCTACCGAT-CTGTTTGTTACCTAGTGCTGGTTTATTTGTCTTG-GT---T--T-TCTTT---A-TACTGAACATGTGTTGTAACCATGA------GTGCAACATGTTT-T-T-CACGTGCAATTCATGATT-GGCCGAGAGCAGGCGAATCTTATATTTCGCAATATAC------T---AGTATGTGTGCACA----GACACACAATC--C---------AGT--CCATGTATAC---G----------CAGCATA---AAT-A--T-A-TC--TTTTTGAATGAAATTGGATATGCAATGTTACTTATATTCAGGAAACAC-AACTG-TCAGCTTTCTTTT-AGAGTTGAGTGTAacgtgtatgccagaaatgaaaggaaacatgacttcttttacacaaaacaagatcattttgttgataaaatctcaaaatttaacaaaagttcattaatagcgttttaactcctgataactcaattttgacagtcagtgtcgcgtgtggccactatgcatgacacacaatgaactgcatgcatcgttactcagcctaccgatctgtttgttacctagtgctggtttatttgtcttggttttctttatactgaacatgtgttgtaaccatgagtgcaacatgtttttcacgtgcaattcatgattggccgagagcaggcgaatcttatatttcgcaatatactagtatgtgtgcacagacacacaatccagtccatgtatacgcagcataaatatatctttttgaatgaaattggatatgcaatgttacttatattcaggaaacacaactgtcagctttcttttagagttgagtgtatgtatgcccagttgaa
gi|5 : aatacttattaaaatacatacttaatattttgaaatgacaggaatctggcCTTAC-ACTTT-T-TATTTCACT---TGTAT-GT--TAGCAA----CTAATAAA----AT--AA--GGCATAC-A--AT-----T--G------------------A-----T---T-----T---T-TACATAC---AAC-AGA------T----TTTC-tgtatgcccagttgaa
gi|5 : aatacacataaaaaagtacatgtttaagattcaagatctcacaacgtgcatggcacatctgattgaagtacatctaaAATAAC--CGCTTTCACTGTCA-TGTCAGCGCG---CC---GACTCA---ATC-TACTTCCGAT-----------CAT--------------T--------------G-----ATCGTC--TCAGCCTATCCAT-CTGTAACTTGT----TGCTGTGTAACTTGTCTAGTGT---T--G-T--TT---T-TATCGGACATGTGTTGTAACCATGC------GTGCAATAT-TTG-T-T-CACGGAAAAGTCATGATA-TACCGAAAGTGGTCGAATTATATGTATGGCAATATTCGTGCG-A---TGCGTGCTTGCACG----GACACATACTC--CCAATTAAAT-ATGACAATGGACGCCCAGTT-GACACTTTATCATA---A-----------T--TAT----ATGCAGTC--AC-TG---TGTAACAAATACTAAGGAAAC-A-AACTG-TAAGGTTTCTTTT-CGAGTGGAGTGTAccgctgacccttctctcgaggtcatgcacagtcatgtataaacaccggaaatgcagaataaccgctttcactgtcatgtcagcgcgccgactcaatctacttccgatcattgatcgtctcagcctatccatctgtaacttgttgctgtgtaacttgtctagtgttgtttttatcggacatgtgttgtaaccatgcgtgcaatatttgttcacggaaaagtcatgatataccgaaagtggtcgaattatatgtatggcaatattcgtgcgatgcgtgcttgcacggacacatactcccaattaaatatgacaatggacgcccagttgacactttatcataattatatgcagtcactgtgtaacaaatactaaggaaacaaactgtaaggtttcttttcgagtggagtgtacgctacagatgaaa
gi|6 : aatacacataaaaaagtacatgtttaagattcaagatctcacaacgtgcatggcacatctgattgaagtacatctaacttacactttttatttcacttgtatgttagcaactaataaaataaggcatacaattgatttttacatacaacagattttcccgctgacccttctctcgaggtcatgcacagtcatgtataaacaccggaaatgcagTTAACACGTTGAAATATA-T-----G-TACACTGAACTC-AAAA-AATACGTTAC-ACTTT-T-TATTTCACT---TGTAT-GT--T----A----TT-----T----AT--AA--GGGGAAATA--AA-----TGAA------------------A-----T---T-----T---T-CATACAT---AACAAGA------TCA--ATTC-A-CTT-T-AAATAAATTGTCAAA-A--CAG----AACA-AA-----AGTTTGTTT--TTAGCGTTTTGACATATTTGATCTTAAATGAGAC----AACCAAT----------------TC-----C-GCATGTTGCC---GCCGCG---TGC-TGCT----AT----------GCAT--------------TGCACATCTTGCATTGCACGTATTGTAACTAAGCCTGCATAT-CTGTAAGTTTT----TGCTGGTTAACTTGTTTTGTGA---T--T-T--TTTTTA-TACTGAACATGTGCGGTAACCATGA------TTGCAA-AT-TTT-T--------------CATAAC----------GCGTGCGAATCGTATATTTTGATATATTCGTGCG-T---TACGTTCGTGCATG----GACATACAATT--TCAATTAAATGCTGGCAATGAGTACACAGTT-GACAATTCAGCATA---AAT-A--T-A-TT--TTTG---ATGAAATTGGAAATGCAATGTAAAATATATCT---AAACAT-AACTG-TACGGTTTCTCTT-GAAATTGAGTGTA----------TATA----T----ATA--CAAATATGTGTcgctacagatgaaa
gi|7 : gctat-T-----A-CATACTAAACTCCAAAA-GAAACTTTAC-ACTTT-T-TATTTCACT---TGTAT-GT--C----AGAGATT-----G----AT--AAAAGG------A--AA-----T--A------------------AATCAGT---T-----T---T-TACACAT---AA---GA------TAA--TTTC-A-TTT-TTAA-TAAAATGTCGAA-ACTTATCGTGAACACAACT---AGATCATTTGTATAGCTTTTTTATTTATTTGATCTTAAAGGTGACT---ACCCAATAACTGCATTTTCACAGTCAATATT-GCGCGTGCCC---ACCATG---GGC-TGTT----GT----------GTAT--------------TACACGCATTGTATTGCATGCATTTTCACCCAGCCTACCCAT-CTGTAAGTTGT----TGCATGTTAACTT--------------------TT---A-TACTGAACAT----T-TAACCATGA------GTGCAACAT-TTT-T-T-CACATGCAATTCATTATG-GATCGAGCGCGGGCGAATCCTATGTTTCACAATAATCATGCA-T---TGCGTGGGTG------------CACAATC--CCATTTAAATGTTGGCAATGGATACACAGTT-TATAATTCAGTATA---AAT-A--T-AGTT--TTTTA--ATGACATTAGATATGCAATGTAACAGATATTTAGAAAA-AA-AAC---TAAGGTTTCTTTT-GGAGTTGA
gi|8 : ATAT--ATATGTA-T-----A-TATACT-AATGCCAAAC-AAAAATTTAT-ACCTT-T-TTTGCCACT---TGTAT-GT--CCGAAA----CT-----A----ATCAAG--GG------A--AA-----C--A------------------A-----T---GAAGA-T---T-TACATAT---AACAAAA------TCAA-TTTA-A-TGA-C-AA-TTAAATGTAAAA-A--CAT----AAGA-AA-----AGTGCATTC--ATAGCATTT--ATATATTTGATCTTAAAAGTGACT---ACCCAGTAACTCCATTTTCATAGTCAGTATC-GCGTGTCGCC---ACCGCT---GAC-CGCT----AT----------GCAT--------------T--------------GCAC---TTGTCA--------ACCCAT-CTGTTAGTTGT----TGCTGATTAACTTGTCTTGTGA---T--TGT--TT---AATACTTAACAAGGGTAGTAACCAGGA------GTGCAACAT-TTT-T---CACCTGCGATTCATGATA-AGCTAATAGCGGGCGAATCGTATATTTCGCAATATATATGCA-G---AGCGTATATGCACG----GACACACAATC--CCACTTAAATGATAGCAATTGATACTCAATT-GATAATCCAGCATA---AAT-A--G-C-GT--TTA----ATGAACTT
gi|9 : gtcgtgttgcagTG-T-----A-TAGAGTCAATTCGTAAA-TA----TT-C-ACTTTATATATTTCACT---TGTAT-GA--C----AGAGATT-----A----ATC-AA--GGC-----A--AA-----T--ACATG--------------A-----T---T-----T---TTTACACAT---AACAAAA------TCA--TTTC-G-TTT-T-TA-TTAAATATCAAA-A--TAA----AACA-AA-----TGTTAATTT--ATAGCGTTTTGACATAATTGAATTTAAAAGTA------ACCTAGTTACTTCATTTTCACATCCAATATC-GCGTGTGGACTAGATTAC------C-T-CT----CTC---------ACAT--------------C--------------CCA-ACATTG--ATTGTGTTT---CAT-CTTTTAGTTGT----TGCTGGTTAACTACTCTTATGA---TTGT-T--TT---A-TACTGAACATTTGATGTAACCATGA------ATGCAACA--TTT-T-T-CACGTGCAATTCAT-----GGTCAGTAGCGAGCGAcaagttgtttctgtcggagttgaggagttgagtgta
gi|9 : tatctatttaaacatcgccatttgtAAATAAATAGTGGCAATGAATACCCAATTTGATAAATCAGCATA---GAT-A--T-AATT--GTTCA--ATTAAATTAGTTACGCAATGTAACAACTATTTTGAAAATAA-AActtaaaatatataataaatataaaataaatagtggcaatgaatacccaatttgataaatcagcatagatataattgttcaattaaattagttacgcaatgtaacaactattttgaaaataaaa
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 11111 1111111111 55555555555555555555555555555 11111111 111 2222 222222 2222 11
lowQualScore : 99 7 0 4 11111 3 1 3 0 0 3 3 5 555 3 44 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666 555 3 555 0 888888 77 33 3 3 0 3 3 55 7777 3 44444 55 1 8888 4 222 2 3 1 555 1 6666 3 7777 7777777777 66666666666666666666666666666 1 0 3 1 6666 1 5 00000000 33 333 2 888888 3 3 444 1 2 3 555 0 6666 44 3 2 555 2 33 888 66 5555 0 3 1 3 3 3 777 8888 555555 55 1111 33 1
lowQualScore : .. . . . ..... . . . . . . . . ... . .. ..................................................................................... ... . ... . ...... .. .. . . . . . .. .... . ..... .. . .... . ... . . . ... . .... . .... .......... ............................. . . . . .... . . ........ .. ... . ...... . . ... . . . ... . .... .. . . ... . .. ... .. .... . . . . . . ... .... ...... .. .... .. .
lowQualScore : 22 5 1 4 11111 6 4 6 2 2 3 1 7 000 1 22 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888 444 1 444 8 888888 33 22 6 6 9 6 6 00 7777 6 11111 00 2 9999 2 777 8 3 8 888 6 8888 3 1111 9999999999 55555555555555555555555555555 2 5 1 9 5555 4 4 11111111 99 999 9 888888 1 1 777 2 9 1 444 8 5555 22 6 9 000 9 99 888 33 7777 7 8 4 1 3 3 000 5555 777777 88 2222 22 0
consensus : TTAACATAT--ANATATA-T-----A-TACACTCAACTCCAAAA-GAAACCTTAC-ACTTT-T-TATTTCACT---TGTAT-GT--C----A----TT-----A----AT--AA--GG------A--AA-----T--A------------------A-----T---T-----T---T-TACACAT---AACAAGA------TCA--TTTC-A-TTT-T-AA-TAAAATGTCAAA-A--TAT----AACA-AA-----AGTTCATTT--ATAGCGTTTTGACTTATTTGATCTTAAAAGTGACT---ACCCAATNACTCCATTTTCACAGTCAATATC-GCGTGTGGCC---ACCGCG---GGC-TGCT----AT----------GCAT--------------T--------------GCACGCATCGTCACTCAGCCTACCCAT-CTGTTAGTTGT----TGCTGGTTAACTTGTCTTGTGA---T--T-T--TT---A-TACTGAACATGTGTTGTAACCATGA------GTGCAACAT-TTT-T-T-CACGTGCAATTCATGATA-GGCCGAGAGCGGGCGAATCGTATGTTTCGCAATATTCGTGCG-T---TGCGTGCGTGCACG----GACACACAATC--CCAATTAAATGGTGGCAATGGATACCCAGTT-GATAATTCAGCATA---AAT-A--T-A-TT--TTT----ATGAAATTGGATATGCAATGTAACAGATATTTAGGAAACAA-AACTG-TAAGGTTTCTTTT-GGAGTTGAGT---GT----AGGTTCCTGTACATTT----ATA-TCAANTATGTGTTT
Reference ( family-1101 ) : TTAACATAT--ANATATA-T-----A-TACACTCAACTCCAAAA-GAAACCTTAC-ACTTT-T-TATTTCACT---TGTAT-GT--C----A----TT-----A----AT--AA--GG------A--AA-----T--A------------------A-----T---T-----T---T-TACACAT---AACAAGA------TCA--TTTC-A-TTT-T-AA-TAAAATGTCAAA-A--TAT----AACA-AA-----AGTTCATTT--ATAGCGTTTTGACTTATTTGATCTTAAAAGTGACT---ACCCAATNACTCCATTTTCACAGTCAATATC-GCGTGTGGCC---ACCGCG---GGC-TGCT----AT----------GCAT--------------T--------------GCACGCATCGTCACTCAGCCTACCCAT-CTGTTAGTTGT----TGCTGGTTAACTTGTCTTGTGA---T--T-T--TT---A-TACTGAACATGTGTTGTAACCATGA------GTGCAACAT-TTT-T-T-CACGTGCAATTCATGATA-GGCCGAGAGCGGGCGAATCGTATGTTTCGCAATATTCGTGCG-T---TGCGTGCGTGCACG----GACACACAATC--CCAATTAAATGGTGGCAATGGATACCCAGTT-GATAATTCAGCATA---AAT-A--T-A-TT--TTT----ATGAAATTGGATATGCAATGTAACAGATATTTAGGAAACAA-AACTG-TAAGGTTTCTTTT-GGAGTTGAGT---GT----AGGTCCCTGTACATTT----ATA-TCAANTATGTGTTT
gi|1 : -TAGTCCATT---TATATAGA--C----AC---TT-----ATTTCAT--AA--GG------G--AAGATGGT--G------------------AAGT--T---T-----T---T-CATACACTCCAA-AAGAAACCTTTCACTTTTT-A-TTT-C-AC-TCTAACGTCAGAGA--TA-----AATA-AATGGAAAGTTCATTT--ATAGCGTTTTGACGTATTTGATCTTAAAAGTGATC---GTCCAAATACTC------------CAATATC-ACGTGTGGCC---ACCGCG---GGC-AGAT----TT----------ACAT--------------T--------------GCACGCATCGTCACTGAGCCTACCCAT-CTGCTAGTTGT----TGCTGGTTAATTTCTTTTGCGA---C--T-T--TTGTCA-TACTAAACATGTGTTGTAATCATGA------GTGCAAATT-TTT-T-T-CACGTGCAATTTATGATA-GGTCGAGAGCGGGCGAATCGTATGATTTGCAATTCTTGCGTG-T---TGCGTGCGCGTACG----TACACACAATC--CCAATTAAATGGTGACAGTGGTTATCCAGTT-GATAATTCATCATA---ACT-A--T-A-TTG-TTTTA--ATGAAATTGGATATACAATGTAACATATATTAAGGAAACAA-TACCG-TAAGGTATCTTTT-GGAGTTGAGT---GT----A
gi|1 : gTTATCATAC--A-ATATT-TCTTTAA-TACACTCAACTCCAAAA-GATACCTTAC-G-GTA-T-TGTTTC-CTTAATATAT-GTTAC----A----TT-----ttaaagaaatattgtatgataattttctctactactagttgattgttattgtgtgcagcggattgcaataacgttaaatatatcagttat
gi|10 : gtagtccatttatatagacacttatttcataagggaagatggtgaagtttttcatacactccaaaagaaacctttcactttttatttcactctaacgtcagagataaataaatggaaagttcatttatagcgttttgacgtatttgatcttaaaagtgatcgtccaaatactccaatatcacgtgtggccaccgcgggcagatttacattgcacgcatcgtcactgagcctacccatctgctagttgttgctggttaatttcttttgcgacttttgtcatactaaacatgtgttgtaatcatgagtgcaaatttttttcacgtgcaatttatgataggtcgagagcgggcgaatcgtatgatttgcaattcttgcgtgttgcgtgcgcgtacgtacacacaatcccaattaaatggtgacagtggttatccagttgataattcatcataactatattgttttaatgaaattggatatacTTT-TATATTTCGCT---TGTAA-GT--C----AGAGATT-----A----ATG-AA--GG----------------T--A------------------------T---T-----T---T-TACGCAT---AACAAGA------TCA--TCTG-A-TTTCT-AA-TAAAATGTCGAA-A--GAT----ATCA-AA-----AAATCATTA--AAAGATTTTTG-CTCATTTGATCTTAAAAGTGACT---ACCCAGTGACTCTAT------------TATC-GCGAGTG--------------------ACT----AT----------GCAT--------------T--------------GCACGTATTGttttctctactactagttgattgttattgtgtgcagcggattgcaataacgttaaatatatcagttat
gi|10 : ccagacaacaatcgcagcattttCTACTCAT-CTGTT-----------GCTTGTTAATTCTTCTTGTAA---T--T-T--TT---A-AACTGAACATGTGTTGTAACTATGAGTCACTGTGGAACAT-TTT-T-T--ACGTGCAATTCATGATA-GGC---GAACGGG-GAATCGTATAAGTAACAATATTCATGCG-T---TGTGTGTGTGAATG----GGCACACAGTC--CCAAGTAAActgacatttacacgcatgaaataaaccaccgctctgactttattctgtgagaaagcgtgttattcttgtgtcaaatctactcatctgttgcttgttaattcttcttgtaatttttaaactgaacatgtgttgtaactatgagtcactgtggaacattttttacgtgcaattcatgataggcgaacggggaatcgtataagtaacaatattcatgcgttgtgtgtgtgaatgggcacacagtcccaagtaaaag
gi|11 : ccagacaacaatcgcagcattttttttatatttcgcttgtaagtcagagattaatgaaggtatttttacgcataacaagatcatctgatttctaataaaatgtcgaaagatatcaaaaaatcattaaaagatttttgctcatttgatcttaaaagtgactacccagtgactctattatcgcgagtgactatgcattgcacgtattgctgacatttacacgcatgaaataaaccaccgctctgactttattctgtgagaaagcgtgttattcttgtgtcaaatCACCCGGC--ACCTGTGCTGC-AATTGT----TGCTGATTAACTTGTCTTGTGA---TATTGT--TT---A-TATTGAACATGTGTTGCAACTATG--------TTTTATGT-TTT-AAT-CACGATTAATCAAT-ATAAGGCCGAGAGCGAGCGAAAAGTATGTCTCGCAATATCCGTGCGGTGCGTGCGTGCGTGCACG----GACACATAATC--CCAATTAAATGCTGGTAATGGATACCCAGTA-AATAATGCTGCATA---AAT-A--TCA-TTCATTTG---ATAGAAATGGATATACAATGTAACAGATATTAAGGAAAAAA-CACTG-TAAGGTATCTTTT-GGAGTTTAAT---AT----A---CTCTATACATTT----ATA-TCAATCAag
gi|12 : ggttgttttaatacatgacaacgGCCTACTCGT-CAGTCACTTGT----TACTGCTGAACTT---------------T-T--TA---A-TACTGAAAATGTGTTTTAACCATGA------GTGCAACGT-TTT-T-TTCGCTTGCAATTCATGGTA-GACCAAGAGTGTGCAAAGCGTATGTTTCGCAATATTCATGCA-T---TTCATGAATGCACA----GACACACAATC--CCAATTAAATGGTGACAATGGATACCCAGTT-GATAATTCAGCATA---CAT-A--TAA-TT--TTTTA--ATGAAATTTGATATGCATTGTAAAAGATTAATAGGAAACAA-AACTG-TAAGGTTTCTTTT-CAAGTTGAGT---GC----AGGTTCgtaccatatcttgtatcagttcagcagatgttatacttggcttcactagtgta
gi|13 : tt-T--TT---A-TACTGAACCTGTTTTGTAACCATGA------GTGCAATAT-TTTTT-T-CACGTGCAATTTATGATA-GGTCGGAAACAGGCGAGTCGTATGTTTCGAAATATCCGTGTG-T---AGCGTGCGTGCACG----TACACACAATA--ATAGTTAAA-GGTGACACTCGATAGCCAGGT-AATAATTCAGCATA---AAT-A--T-A------------ATTAA---GGA----------AACAAATA----------------TG-TAAGGTTTCTTCT-GGAGTTCAGT---GT----Aaatgaaagaataacatcacaaatatttaataaaaaataaatttgatttttcagtt
gi|13 : tttgAAGATAT--ACCTAGA-T-----AATACACTGAACTCCAGAA-GAAACCTTAC-A-TAT-T-TGTTTC-CT---Tttatctaggtatatcttcacttagttttgttaaaaaacgttaaatattacgacagtta
gi|14 : tttgtttatactgaacctgttttgtaaccatgagtgcaatatttttttcacgtgcaatttatgataggtcggaaacaggcgagtcgtatgtttcgaaatatccgtgtgtagcgtgcgtgcacgtacacacaataatagttaaaggtgacactcgatagccaggtaataattcagcataaatataatt----A----TT-----A----AT--AAAGGG------A--AA-----T--A------------------A-----A---TGAACAT---T-TACACAT---AACAAGA------TAG--ATTC-A-TTT-TTAA-TAAAATGTCAAA-A--CAT----AACA-AA-----GGTGCATTT--ATAGCGTTTTGACTTATTTGATCTTAAAAGTGAAC---ACCAGACTACTCCATTTGCTTAGTTAATATC-GCGTATGCCC---GCCGCG---GGC-TGCT----ATGCATTGCATTGCAT--------------T--------------GCATGCATCGTCACTTAGTATACCCGT-CTGCTAGTTGT----TGCTGATTAACTTGTCTTGTGA---T--T-T--TTTG-A-TACTGAACATGTGTTGTcacttagttttgttaaaaaacgttaaatattacgacagtta
gi|15 : tcagag-TACACTCAACACCGAA--TAAACGTTAC-ACTTT-T-TTTTTTACT---TGTAT-GA--C----AGAGGTT-----A----AT--AA--AG------ATAAA-----T--A------------------AA----T---TA----T---T-TACACAT---AACACGA------TCT--TTTC-A-TTT-TGAA-TAAAATGCCAAA-T--CAT----AACA-AA-----AGTTAATTT--ATAGCATTTTGACTTTTTTGATCTCAAAAGTTACT---ACCCAATTACTCCAATGTCAAAGTCAATATC-GCAAGGGGCC---ACCACA---GGC-TACT----GT----------
gi|16 : TCATGATA-GACCGAGAGCAGGTGAATCGCATGTTTCGCAGCATTCGTGCG-T---TGTGTGTGTGCACGCACGGACACGCAATC--CCAATTAAATGGTGGCAGTAGATACACAGTT-GATAATTCAG-------AAT-A--T-T-TT--TTT----
gi|17 : tcttaaaccgaaacacgatctatgtgtaacttgctatcggacaataaatcactcaaaattagtttaatacgacattaATG-C-----A-TACACTCATCTCTAAAA-GGAACTTTAC-ACTTT-T-TATTTGACT---CGGAT-GG--CCGATA----TT-----A----AT--AAAGGG------A--AA-----T--ATATTGATTTTACACATATA-----T---TAAT--T---T-TACACAT---AATAAGA------TCA--TTTT-ATTTT-T-AA-TAAAATGTCAAA-A--TAT----AACA-AA-----ATTTTATTT--ATAttttttatgaa
gi|18 : aaaagatatttaactcT--TTA----ATGCAATTGAATATGAAATGTAAGAGATATT-AAGAAATAA-AACTG-TTAGGTTTCTTTC-TGAGTTTAGT---GT----A
gi|19 : CCAGTT-GATAATTCAGCATA---AAT-AAAT-G-TT--GTT----ATGATATTGGATATGCAATGTAGCCGATATTTAGGAtattaacagtatacaggtagatttgttctactattgttta
gi|2 : TTAATATAT--AACT-TA-T-----A-TACACTCAATTACAAAC-GAAACCTTAC-ACTTG-T-TATTTCACT---GGTAT-GT--CAGAGA----TT-----A----AT--AAAGGG------A--AAT----T--A------------------A-----TGGAT-----T---T-TACACAG---AACAGGA------TCA--TATC-
gi|2 : taATCTTGAAAGTGACTGCAACTCAATAACTCCATTTTCACAGTCAATATC-GCGTGTGACC---ACTTCG---GGC-TGCT----AT----------GCATTGTACCCATTGTATT--------------GCACGCATCGTCACTCAGCCTACCCAA-CTGTTATTTGT----TGCTGGTCAACGTGTCTTGTGATTGT--T-T--TT---A-TACTGAACAAGTGCTGAAATCATGA------GTGCAACAT-TTT-T-T-CACGTGCAGTGCATGAGA-AGCTGAGGGTGGGCGAATGGTATGTTTCGCAATAGTCGTGCA-T---TGCGTGCGTG-ACA----AACAttgaaagtgactgcaactcaataactccattttcacagtcaatatcgcgtgtgaccacttcgggctgctatgcattgtacccattgtattgcacgcatcgtcactcagcctacccaactgttatttgttgctggtcaacgtgtcttgtgattgtttttatactgaacaagtgctgaaatcatgagtgcaacattttttcacgtgcagtgcatgagaagctgagggtgggcgaatggtatgtttcgcaatagtcgtgcattgcgtgcgtgacaaacatttactgaacgggttagttgttccgttcagtttacaatcagtttataatcatccaattaaatagcaataatggatacacagttgtttaatcagcatatacaattatattgtggaattgaatatgcaatatatcagatatttaagaaacaaaactgtaaggctacttttggagttgacgaatacgatacattgt
gi|2 : tattaatatataacttatatacactcaattacaaacgaaaccttacacttgttatttcactggtatgtcagagattaataaagggaaattaatggattttacacagaacaggatcatATAATCATCCAATTAAATAGCAATAATGGATACACAGTT-GTTTAATCAGCATATACAATTA--T-A-TT---------GTGGAATTGAATATGCAATATATCAGATATTTAAGAAACAA-AACTG-TAAGGCTACTTTT-GGAGTTGAtttactgaacgggttagttgttccgttcagtttacaatcagtttataatcatccaattaaatagcaataatggatacacagttgtttaatcagcatatacaattatattgtggaattgaatatgcaatatatcagatatttaagaaacaaaactgtaaggctacttttggagttgacgaatacgatacattgt
gi|3 : tattaatatataacttatatacactcaattacaaacgaaaccttacacttgttatttcactggtatgtcagagattaataaagggaaattaatggattttacacagaacaggatcatatcttgaaagtgactgcaactcaataactccattttcacagtcaatatcgcgtgtgaccacttcgggctgctatgcattgtacccattgtattgcacgcatcgtcactcagcctacccaactgttatttgttgctggtcaacgtgtcttgtgattgtttttatactgaacaagtgctgaaatcatgagtgcaacattttttcacgtgcagtgcatgagaagctgagggtgggcgaatggtatgtttcgcaatagtcgtgcattgcgtgcgtgacaaacatttactgaacgggttagttgttccgttcagtttacaatcagtttTTAACGTAT--ACATATAAT-----G-TACGCTCAACTCCTCAA-CTAACCTTAC-ACCTT-T-TATCTCACT---TGTAA-AT--C----A----TT-----A----AT--------------------------------------------------------T-----T---G-TACCCAT---AAGAAAA------TCA--TGTCTA-TTT-T-GA-TAAAATGCCAAG-A--TAT----AACA-AA-----AGTTCATTG--AAAGCATTTCGACTTATTTGATCTTAAAAATGACT---ACCCAATTACTCCATTTTTACA-TCAGTATC-GCTTGTGGCC---ACCGCG---GGT-TGCT----AT----------CCAT--------------T--------------ACACGCATCGTCACTCAATCTGCTAAT-CTGTTAGTTGT----TTCTG-TTAACTTTTCTAGTGA---T--T-T--TT---A-TACTGAACATGTGTTGTTACTATGA------GTGCAACAT-TTG-G-T-CACGTGCCATACATAATA-GGTCGAGAGCGGGCGAATAGTATGTTTCGCAATATTTG-GCG-T---TGCGTGCGTGCACG----GACACACAATC--CCAATTAAATGGTGACAATGGATACACAGAT-GATAATTCAGCATA---AAT-A--T-A-TT--TTT----ATGAAATTGGATATGCAATGTAACAAATGTTTAGGAAACAA-AACTG-TAAGGTTTCTTTT-GGAATCGAATGGAGG----AGGT--TTGAACATTT----ATATTCATTTATGTGTTTcgaatacgatacattgt
gi|4 : GAAATAATAAGTGGTAAGGTTTCTTTTTGGAATCGAGT---GTAGCCAGATTCCTGT-CATTTCAAAATA-TTAAGTATGTATTTgt
gi|4 : aatacttatta-TACACTCGATTCCAAAAAGAAACCTTACCACTTA-T-TATTTCACG---TGTAT-GC--C----A----GA-----A----ATGAAA--GG------A--AA-----C--ATG----------------A-----C---T-----TCTTT-TACACAA---AACAAGA------TCA--TTT----TGT-T-GA-TAAAATCTCAAA-A--TTT----AACA-AA-----AGTTCATTA--ATAGCGTTTTAACT-------------------------CCTGATAACTCAATTTTGACAGTCAGTGTC-GCGTGTGGCC---ACTATGCATGACACACA----AT----------GAAC--------------T--------------GCATGCATCGTTACTCAGCCTACCGAT-CTGTTTGTTACCTAGTGCTGGTTTATTTGTCTTG-GT---T--T-TCTTT---A-TACTGAACATGTGTTGTAACCATGA------GTGCAACATGTTT-T-T-CACGTGCAATTCATGATT-GGCCGAGAGCAGGCGAATCTTATATTTCGCAATATAC------T---AGTATGTGTGCACA----GACACACAATC--C---------AGT--CCATGTATAC---G----------CAGCATA---AAT-A--T-A-TC--TTTTTGAATGAAATTGGATATGCAATGTTACTTATATTCAGGAAACAC-AACTG-TCAGCTTTCTTTT-AGAGTTGAGT---GT----ATGTacgtgtatgccagaaatgaaaggaaacatgacttcttttacacaaaacaagatcattttgttgataaaatctcaaaatttaacaaaagttcattaatagcgttttaactcctgataactcaattttgacagtcagtgtcgcgtgtggccactatgcatgacacacaatgaactgcatgcatcgttactcagcctaccgatctgtttgttacctagtgctggtttatttgtcttggttttctttatactgaacatgtgttgtaaccatgagtgcaacatgtttttcacgtgcaattcatgattggccgagagcaggcgaatcttatatttcgcaatatactagtatgtgtgcacagacacacaatccagtccatgtatacgcagcataaatatatctttttgaatgaaattggatatgcaatgttacttatattcaggaaacacaactgtcagctttcttttagagttgagtgtatgtatgcccagttgaa
gi|5 : aatacttattaaaatacatacttaatattttgaaatgacaggaatctggcCTTAC-ACTTT-T-TATTTCACT---TGTAT-GT--TAGCAA----CTAATAAA----AT--AA--GGCATAC-A--AT-----T--G------------------A-----T---T-----T---T-TACATAC---AAC-AGA------T----TTTC-atgcccagttgaa
gi|5 : aatacacataaaaaagtacatgtttaagattcaagatctcacaacgtgcatggcacatctgattgaagtacatctaaAATAAC--CGCTTTCACTGTCA-TGTCAGCGCG---CC---GACTCA---ATC-TACTTCCGAT-----------CAT--------------T--------------G-----ATCGTC--TCAGCCTATCCAT-CTGTAACTTGT----TGCTGTGTAACTTGTCTAGTGT---T--G-T--TT---T-TATCGGACATGTGTTGTAACCATGC------GTGCAATAT-TTG-T-T-CACGGAAAAGTCATGATA-TACCGAAAGTGGTCGAATTATATGTATGGCAATATTCGTGCG-A---TGCGTGCTTGCACG----GACACATACTC--CCAATTAAAT-ATGACAATGGACGCCCAGTT-GACACTTTATCATA---A-----------T--TAT----ATGCAGTC--AC-TG---TGTAACAAATACTAAGGAAAC-A-AACTG-TAAGGTTTCTTTT-CGAGTGGAGT---GT----Accgctgacccttctctcgaggtcatgcacagtcatgtataaacaccggaaatgcagaataaccgctttcactgtcatgtcagcgcgccgactcaatctacttccgatcattgatcgtctcagcctatccatctgtaacttgttgctgtgtaacttgtctagtgttgtttttatcggacatgtgttgtaaccatgcgtgcaatatttgttcacggaaaagtcatgatataccgaaagtggtcgaattatatgtatggcaatattcgtgcgatgcgtgcttgcacggacacatactcccaattaaatatgacaatggacgcccagttgacactttatcataattatatgcagtcactgtgtaacaaatactaaggaaacaaactgtaaggtttcttttcgagtggagtgtacgctacagatgaaa
gi|6 : aatacacataaaaaagtacatgtttaagattcaagatctcacaacgtgcatggcacatctgattgaagtacatctaacttacactttttatttcacttgtatgttagcaactaataaaataaggcatacaattgatttttacatacaacagattttcccgctgacccttctctcgaggtcatgcacagtcatgtataaacaccggaaatgcagTTAACACGTTGAAATATA-T-----G-TACACTGAACTC-AAAA-AATACGTTAC-ACTTT-T-TATTTCACT---TGTAT-GT--T----A----TT-----T----AT--AA--GGGGAAATA--AA-----TGAA------------------A-----T---T-----T---T-CATACAT---AACAAGA------TCA--ATTC-A-CTT-T-AAATAAATTGTCAAA-A--CAG----AACA-AA-----AGTTTGTTT--TTAGCGTTTTGACATATTTGATCTTAAATGAGAC----AACCAAT----------------TC-----C-GCATGTTGCC---GCCGCG---TGC-TGCT----AT----------GCAT--------------TGCACATCTTGCATTGCACGTATTGTAACTAAGCCTGCATAT-CTGTAAGTTTT----TGCTGGTTAACTTGTTTTGTGA---T--T-T--TTTTTA-TACTGAACATGTGCGGTAACCATGA------TTGCAA-AT-TTT-T--------------CATAAC----------GCGTGCGAATCGTATATTTTGATATATTCGTGCG-T---TACGTTCGTGCATG----GACATACAATT--TCAATTAAATGCTGGCAATGAGTACACAGTT-GACAATTCAGCATA---AAT-A--T-A-TT--TTTG---ATGAAATTGGAAATGCAATGTAAAATATATCT---AAACAT-AACTG-TACGGTTTCTCTT-GAAATTGAGT---GT----A------TATA----T----ATA--CAAATATGTGTcgctacagatgaaa
gi|7 : gctat-T-----A-CATACTAAACTCCAAAA-GAAACTTTAC-ACTTT-T-TATTTCACT---TGTAT-GT--C----AGAGATT-----G----AT--AAAAGG------A--AA-----T--A------------------AATCAGT---T-----T---T-TACACAT---AA---GA------TAA--TTTC-A-TTT-TTAA-TAAAATGTCGAA-ACTTATCGTGAACACAACT---AGATCATTTGTATAGCTTTTTTATTTATTTGATCTTAAAGGTGACT---ACCCAATAACTGCATTTTCACAGTCAATATT-GCGCGTGCCC---ACCATG---GGC-TGTT----GT----------GTAT--------------TACACGCATTGTATTGCATGCATTTTCACCCAGCCTACCCAT-CTGTAAGTTGT----TGCATGTTAACTT--------------------TT---A-TACTGAACAT----T-TAACCATGA------GTGCAACAT-TTT-T-T-CACATGCAATTCATTATG-GATCGAGCGCGGGCGAATCCTATGTTTCACAATAATCATGCA-T---TGCGTGGGTG------------CACAATC--CCATTTAAATGTTGGCAATGGATACACAGTT-TATAATTCAGTATA---AAT-A--T-AGTT--TTTTA--ATGACATTAGATATGCAATGTAACAGATATTTAGAAAA-AA-AAC---TAAGGTTTCTTTT-GGAGTTGA
gi|8 : ATAT--ATATGTA-T-----A-TATACT-AATGCCAAAC-AAAAATTTAT-ACCTT-T-TTTGCCACT---TGTAT-GT--CCGAAA----CT-----A----ATCAAG--GG------A--AA-----C--A------------------A-----T---GAAGA-T---T-TACATAT---AACAAAA------TCAA-TTTA-A-TGA-C-AA-TTAAATGTAAAA-A--CAT----AAGA-AA-----AGTGCATTC--ATAGCATTT--ATATATTTGATCTTAAAAGTGACT---ACCCAGTAACTCCATTTTCATAGTCAGTATC-GCGTGTCGCC---ACCGCT---GAC-CGCT----AT----------GCAT--------------T--------------GCAC---TTGTCA--------ACCCAT-CTGTTAGTTGT----TGCTGATTAACTTGTCTTGTGA---T--TGT--TT---AATACTTAACAAGGGTAGTAACCAGGA------GTGCAACAT-TTT-T---CACCTGCGATTCATGATA-AGCTAATAGCGGGCGAATCGTATATTTCGCAATATATATGCA-G---AGCGTATATGCACG----GACACACAATC--CCACTTAAATGATAGCAATTGATACTCAATT-GATAATCCAGCATA---AAT-A--G-C-GT--TTA----ATGAACTT
gi|9 : gtcgtgttgcagTG-T-----A-TAGAGTCAATTCGTAAA-TA----TT-C-ACTTTATATATTTCACT---TGTAT-GA--C----AGAGATT-----A----ATC-AA--GGC-----A--AA-----T--ACATG--------------A-----T---T-----T---TTTACACAT---AACAAAA------TCA--TTTC-G-TTT-T-TA-TTAAATATCAAA-A--TAA----AACA-AA-----TGTTAATTT--ATAGCGTTTTGACATAATTGAATTTAAAAGTA------ACCTAGTTACTTCATTTTCACATCCAATATC-GCGTGTGGACTAGATTAC------C-T-CT----CTC---------ACAT--------------C--------------CCA-ACATTG--ATTGTGTTT---CAT-CTTTTAGTTGT----TGCTGGTTAACTACTCTTATGA---TTGT-T--TT---A-TACTGAACATTTGATGTAACCATGA------ATGCAACA--TTT-T-T-CACGTGCAATTCAT-----GGTCAGTAGCGAGCGAcaagttgtttctgtcggagttgaggagttgagtgta
gi|9 : tatctatttaaacatcgccatttgtAAATAAATAGTGGCAATGAATACCCAATTTGATAAATCAGCATA---GAT-A--T-AATT--GTTCA--ATTAAATTAGTTACGCAATGTAACAACTATTTTGAAAATAA-AActtaaaatatataataaatataaaataaatagtggcaatgaatacccaatttgataaatcagcatagatataattgttcaattaaattagttacgcaatgtaacaactattttgaaaataaaa
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 11111 1111111111 55555555555555555555555555555 11111111 111 2222 222222 2222 11
lowQualScore : 99 7 0 4 11111 3 1 3 0 0 3 3 5 555 3 44 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666 555 3 555 0 888888 77 33 3 3 0 3 3 55 7777 3 44444 55 1 8888 4 222 2 3 1 555 1 6666 3 7777 7777777777 66666666666666666666666666666 1 0 3 1 6666 1 5 00000000 33 333 2 888888 3 3 444 1 2 3 555 0 6666 44 3 2 555 2 33 888 66 5555 0 3 1 3 3 3 777 8888 000000 55 1111 33 1
lowQualScore : .. . . . ..... . . . . . . . . ... . .. ..................................................................................... ... . ... . ...... .. .. . . . . . .. .... . ..... .. . .... . ... . . . ... . .... . .... .......... ............................. . . . . .... . . ........ .. ... . ...... . . ... . . . ... . .... .. . . ... . .. ... .. .... . . . . . . ... .... ...... .. .... .. .
lowQualScore : 22 5 1 4 11111 6 4 6 2 2 3 1 7 000 1 22 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888 444 1 444 8 888888 33 22 6 6 9 6 6 00 7777 6 11111 00 2 9999 2 777 8 3 8 888 6 8888 3 1111 9999999999 55555555555555555555555555555 2 5 1 9 5555 4 4 11111111 99 999 9 888888 1 1 777 2 9 1 444 8 5555 22 6 9 000 9 99 888 33 7777 7 8 4 1 3 3 000 5555 333333 88 2222 22 0
consensus : TTAACATAT--ANATATA-T-----A-TACACTCAACTCCAAAA-GAAACCTTAC-ACTTT-T-TATTTCACT---TGTAT-GT--C----A----TT-----A----AT--AA--GG------A--AA-----T--A------------------A-----T---T-----T---T-TACACAT---AACAAGA------TCA--TTTC-A-TTT-T-AA-TAAAATGTCAAA-A--TAT----AACA-AA-----AGTTCATTT--ATAGCGTTTTGACTTATTTGATCTTAAAAGTGACT---ACCCAATNACTCCATTTTCACAGTCAATATC-GCGTGTGGCC---ACCGCG---GGC-TGCT----AT----------GCAT--------------T--------------GCACGCATCGTCACTCAGCCTACCCAT-CTGTTAGTTGT----TGCTGGTTAACTTGTCTTGTGA---T--T-T--TT---A-TACTGAACATGTGTTGTAACCATGA------GTGCAACAT-TTT-T-T-CACGTGCAATTCATGATA-GGCCGAGAGCGGGCGAATCGTATGTTTCGCAATATTCGTGCG-T---TGCGTGCGTGCACG----GACACACAATC--CCAATTAAATGGTGGCAATGGATACCCAGTT-GATAATTCAGCATA---AAT-A--T-A-TT--TTT----ATGAAATTGGATATGCAATGTAACAGATATTTAGGAAACAA-AACTG-TAAGGTTTCTTTT-GGAGTTGAGT---GT----AGGTTCCTGTACATTT----ATA-TCAANTATGTGTTT
Reference ( family-1101 ) : TTAACATAT--ANATATA-T-----A-TACACTCAACTCCAAAA-GAAACCTTAC-ACTTT-T-TATTTCACT---TGTAT-GT--C----A----TT-----A----AT--AA--GG------A--AA-----T--A------------------A-----T---T-----T---T-TACACAT---AACAAGA------TCA--TTTC-A-TTT-T-AA-TAAAATGTCAAA-A--TAT----AACA-AA-----AGTTCATTT--ATAGCGTTTTGACTTATTTGATCTTAAAAGTGACT---ACCCAATNACTCCATTTTCACAGTCAATATC-GCGTGTGGCC---ACCGCG---GGC-TGCT----AT----------GCAT--------------T--------------GCACGCATCGTCACTCAGCCTACCCAT-CTGTTAGTTGT----TGCTGGTTAACTTGTCTTGTGA---T--T-T--TT---A-TACTGAACATGTGTTGTAACCATGA------GTGCAACAT-TTT-T-T-CACGTGCAATTCATGATA-GGCCGAGAGCGGGCGAATCGTATGTTTCGCAATATTCGTGCG-T---TGCGTGCGTGCACG----GACACACAATC--CCAATTAAATGGTGGCAATGGATACCCAGTT-GATAATTCAGCATA---AAT-A--T-A-TT--TTT----ATGAAATTGGATATGCAATGTAACAGATATTTAGGAAACAA-AACTG-TAAGGTTTCTTTT-GGAGTTGAGT---GT----AGGTTCCTGTACATTT----ATA-TCAANTATGTGTTT
gi|1 : -TAGTCCATT---TATATAGA--C----AC---TT-----ATTTCAT--AA--GG------G--AAGATGGT--G------------------AAGT--T---T-----T---T-CATACACTCCAA-AAGAAACCTTTCACTTTTT-A-TTT-C-AC-TCTAACGTCAGAGA--TA-----AATA-AATGGAAAGTTCATTT--ATAGCGTTTTGACGTATTTGATCTTAAAAGTGATC---GTCCAAATACTC------------CAATATC-ACGTGTGGCC---ACCGCG---GGC-AGAT----TT----------ACAT--------------T--------------GCACGCATCGTCACTGAGCCTACCCAT-CTGCTAGTTGT----TGCTGGTTAATTTCTTTTGCGA---C--T-T--TTGTCA-TACTAAACATGTGTTGTAATCATGA------GTGCAAATT-TTT-T-T-CACGTGCAATTTATGATA-GGTCGAGAGCGGGCGAATCGTATGATTTGCAATTCTTGCGTG-T---TGCGTGCGCGTACG----TACACACAATC--CCAATTAAATGGTGACAGTGGTTATCCAGTT-GATAATTCATCATA---ACT-A--T-A-TTG-TTTTA--ATGAAATTGGATATACAATGTAACATATATTAAGGAAACAA-TACCG-TAAGGTATCTTTT-GGAGTTGAGT---GT----A
gi|1 : gTTATCATAC--A-ATATT-TCTTTAA-TACACTCAACTCCAAAA-GATACCTTAC-G-GTA-T-TGTTTC-CTTAATATAT-GTTAC----A----TT-----ttaaagaaatattgtatgataattttctctactactagttgattgttattgtgtgcagcggattgcaataacgttaaatatatcagttat
gi|10 : gtagtccatttatatagacacttatttcataagggaagatggtgaagtttttcatacactccaaaagaaacctttcactttttatttcactctaacgtcagagataaataaatggaaagttcatttatagcgttttgacgtatttgatcttaaaagtgatcgtccaaatactccaatatcacgtgtggccaccgcgggcagatttacattgcacgcatcgtcactgagcctacccatctgctagttgttgctggttaatttcttttgcgacttttgtcatactaaacatgtgttgtaatcatgagtgcaaatttttttcacgtgcaatttatgataggtcgagagcgggcgaatcgtatgatttgcaattcttgcgtgttgcgtgcgcgtacgtacacacaatcccaattaaatggtgacagtggttatccagttgataattcatcataactatattgttttaatgaaattggatatacTTT-TATATTTCGCT---TGTAA-GT--C----AGAGATT-----A----ATG-AA--GG----------------T--A------------------------T---T-----T---T-TACGCAT---AACAAGA------TCA--TCTG-A-TTTCT-AA-TAAAATGTCGAA-A--GAT----ATCA-AA-----AAATCATTA--AAAGATTTTTG-CTCATTTGATCTTAAAAGTGACT---ACCCAGTGACTCTAT------------TATC-GCGAGTG--------------------ACT----AT----------GCAT--------------T--------------GCACGTATTGttttctctactactagttgattgttattgtgtgcagcggattgcaataacgttaaatatatcagttat
gi|10 : ccagacaacaatcgcagcattttCTACTCAT-CTGTT-----------GCTTGTTAATTCTTCTTGTAA---T--T-T--TT---A-AACTGAACATGTGTTGTAACTATGAGTCACTGTGGAACAT-TTT-T-T--ACGTGCAATTCATGATA-GGC---GAACGGG-GAATCGTATAAGTAACAATATTCATGCG-T---TGTGTGTGTGAATG----GGCACACAGTC--CCAAGTAAActgacatttacacgcatgaaataaaccaccgctctgactttattctgtgagaaagcgtgttattcttgtgtcaaatctactcatctgttgcttgttaattcttcttgtaatttttaaactgaacatgtgttgtaactatgagtcactgtggaacattttttacgtgcaattcatgataggcgaacggggaatcgtataagtaacaatattcatgcgttgtgtgtgtgaatgggcacacagtcccaagtaaaag
gi|11 : ccagacaacaatcgcagcattttttttatatttcgcttgtaagtcagagattaatgaaggtatttttacgcataacaagatcatctgatttctaataaaatgtcgaaagatatcaaaaaatcattaaaagatttttgctcatttgatcttaaaagtgactacccagtgactctattatcgcgagtgactatgcattgcacgtattgctgacatttacacgcatgaaataaaccaccgctctgactttattctgtgagaaagcgtgttattcttgtgtcaaatCACCCGGC--ACCTGTGCTGC-AATTGT----TGCTGATTAACTTGTCTTGTGA---TATTGT--TT---A-TATTGAACATGTGTTGCAACTATG--------TTTTATGT-TTT-AAT-CACGATTAATCAAT-ATAAGGCCGAGAGCGAGCGAAAAGTATGTCTCGCAATATCCGTGCGGTGCGTGCGTGCGTGCACG----GACACATAATC--CCAATTAAATGCTGGTAATGGATACCCAGTA-AATAATGCTGCATA---AAT-A--TCA-TTCATTTG---ATAGAAATGGATATACAATGTAACAGATATTAAGGAAAAAA-CACTG-TAAGGTATCTTTT-GGAGTTTAAT---AT----A---CTCTATACATTT----ATA-TCAATCAag
gi|12 : ggttgttttaatacatgacaacgGCCTACTCGT-CAGTCACTTGT----TACTGCTGAACTT---------------T-T--TA---A-TACTGAAAATGTGTTTTAACCATGA------GTGCAACGT-TTT-T-TTCGCTTGCAATTCATGGTA-GACCAAGAGTGTGCAAAGCGTATGTTTCGCAATATTCATGCA-T---TTCATGAATGCACA----GACACACAATC--CCAATTAAATGGTGACAATGGATACCCAGTT-GATAATTCAGCATA---CAT-A--TAA-TT--TTTTA--ATGAAATTTGATATGCATTGTAAAAGATTAATAGGAAACAA-AACTG-TAAGGTTTCTTTT-CAAGTTGAGT---GC----AGGTTCgtaccatatcttgtatcagttcagcagatgttatacttggcttcactagtgta
gi|13 : tt-T--TT---A-TACTGAACCTGTTTTGTAACCATGA------GTGCAATAT-TTTTT-T-CACGTGCAATTTATGATA-GGTCGGAAACAGGCGAGTCGTATGTTTCGAAATATCCGTGTG-T---AGCGTGCGTGCACG----TACACACAATA--ATAGTTAAA-GGTGACACTCGATAGCCAGGT-AATAATTCAGCATA---AAT-A--T-A------------ATTAA---GGA----------AACAAATA----------------TG-TAAGGTTTCTTCT-GGAGTTCAGT---GT----Aaatgaaagaataacatcacaaatatttaataaaaaataaatttgatttttcagtt
gi|13 : tttgAAGATAT--ACCTAGA-T-----AATACACTGAACTCCAGAA-GAAACCTTAC-A-TAT-T-TGTTTC-CT---Tttatctaggtatatcttcacttagttttgttaaaaaacgttaaatattacgacagtta
gi|14 : tttgtttatactgaacctgttttgtaaccatgagtgcaatatttttttcacgtgcaatttatgataggtcggaaacaggcgagtcgtatgtttcgaaatatccgtgtgtagcgtgcgtgcacgtacacacaataatagttaaaggtgacactcgatagccaggtaataattcagcataaatataatt----A----TT-----A----AT--AAAGGG------A--AA-----T--A------------------A-----A---TGAACAT---T-TACACAT---AACAAGA------TAG--ATTC-A-TTT-TTAA-TAAAATGTCAAA-A--CAT----AACA-AA-----GGTGCATTT--ATAGCGTTTTGACTTATTTGATCTTAAAAGTGAAC---ACCAGACTACTCCATTTGCTTAGTTAATATC-GCGTATGCCC---GCCGCG---GGC-TGCT----ATGCATTGCATTGCAT--------------T--------------GCATGCATCGTCACTTAGTATACCCGT-CTGCTAGTTGT----TGCTGATTAACTTGTCTTGTGA---T--T-T--TTTG-A-TACTGAACATGTGTTGTcacttagttttgttaaaaaacgttaaatattacgacagtta
gi|15 : tcagag-TACACTCAACACCGAA--TAAACGTTAC-ACTTT-T-TTTTTTACT---TGTAT-GA--C----AGAGGTT-----A----AT--AA--AG------ATAAA-----T--A------------------AA----T---TA----T---T-TACACAT---AACACGA------TCT--TTTC-A-TTT-TGAA-TAAAATGCCAAA-T--CAT----AACA-AA-----AGTTAATTT--ATAGCATTTTGACTTTTTTGATCTCAAAAGTTACT---ACCCAATTACTCCAATGTCAAAGTCAATATC-GCAAGGGGCC---ACCACA---GGC-TACT----GT----------
gi|16 : TCATGATA-GACCGAGAGCAGGTGAATCGCATGTTTCGCAGCATTCGTGCG-T---TGTGTGTGTGCACGCACGGACACGCAATC--CCAATTAAATGGTGGCAGTAGATACACAGTT-GATAATTCAG-------AAT-A--T-T-TT--TTT----
gi|17 : tcttaaaccgaaacacgatctatgtgtaacttgctatcggacaataaatcactcaaaattagtttaatacgacattaATG-C-----A-TACACTCATCTCTAAAA-GGAACTTTAC-ACTTT-T-TATTTGACT---CGGAT-GG--CCGATA----TT-----A----AT--AAAGGG------A--AA-----T--ATATTGATTTTACACATATA-----T---TAAT--T---T-TACACAT---AATAAGA------TCA--TTTT-ATTTT-T-AA-TAAAATGTCAAA-A--TAT----AACA-AA-----ATTTTATTT--ATAttttttatgaa
gi|18 : aaaagatatttaactcT--TTA----ATGCAATTGAATATGAAATGTAAGAGATATT-AAGAAATAA-AACTG-TTAGGTTTCTTTC-TGAGTTTAGT---GT----A
gi|19 : CCAGTT-GATAATTCAGCATA---AAT-AAAT-G-TT--GTT----ATGATATTGGATATGCAATGTAGCCGATATTTAGGAtattaacagtatacaggtagatttgttctactattgttta
gi|2 : TTAATATAT--AACT-TA-T-----A-TACACTCAATTACAAAC-GAAACCTTAC-ACTTG-T-TATTTCACT---GGTAT-GT--CAGAGA----TT-----A----AT--AAAGGG------A--AAT----T--A------------------A-----TGGAT-----T---T-TACACAG---AACAGGA------TCA--TATC-
gi|2 : taATCTTGAAAGTGACTGCAACTCAATAACTCCATTTTCACAGTCAATATC-GCGTGTGACC---ACTTCG---GGC-TGCT----AT----------GCATTGTACCCATTGTATT--------------GCACGCATCGTCACTCAGCCTACCCAA-CTGTTATTTGT----TGCTGGTCAACGTGTCTTGTGATTGT--T-T--TT---A-TACTGAACAAGTGCTGAAATCATGA------GTGCAACAT-TTT-T-T-CACGTGCAGTGCATGAGA-AGCTGAGGGTGGGCGAATGGTATGTTTCGCAATAGTCGTGCA-T---TGCGTGCGTG-ACA----AACAttgaaagtgactgcaactcaataactccattttcacagtcaatatcgcgtgtgaccacttcgggctgctatgcattgtacccattgtattgcacgcatcgtcactcagcctacccaactgttatttgttgctggtcaacgtgtcttgtgattgtttttatactgaacaagtgctgaaatcatgagtgcaacattttttcacgtgcagtgcatgagaagctgagggtgggcgaatggtatgtttcgcaatagtcgtgcattgcgtgcgtgacaaacatttactgaacgggttagttgttccgttcagtttacaatcagtttataatcatccaattaaatagcaataatggatacacagttgtttaatcagcatatacaattatattgtggaattgaatatgcaatatatcagatatttaagaaacaaaactgtaaggctacttttggagttgacgaatacgatacattgt
gi|2 : tattaatatataacttatatacactcaattacaaacgaaaccttacacttgttatttcactggtatgtcagagattaataaagggaaattaatggattttacacagaacaggatcatATAATCATCCAATTAAATAGCAATAATGGATACACAGTT-GTTTAATCAGCATATACAATTA--T-A-TT---------GTGGAATTGAATATGCAATATATCAGATATTTAAGAAACAA-AACTG-TAAGGCTACTTTT-GGAGTTGAtttactgaacgggttagttgttccgttcagtttacaatcagtttataatcatccaattaaatagcaataatggatacacagttgtttaatcagcatatacaattatattgtggaattgaatatgcaatatatcagatatttaagaaacaaaactgtaaggctacttttggagttgacgaatacgatacattgt
gi|3 : tattaatatataacttatatacactcaattacaaacgaaaccttacacttgttatttcactggtatgtcagagattaataaagggaaattaatggattttacacagaacaggatcatatcttgaaagtgactgcaactcaataactccattttcacagtcaatatcgcgtgtgaccacttcgggctgctatgcattgtacccattgtattgcacgcatcgtcactcagcctacccaactgttatttgttgctggtcaacgtgtcttgtgattgtttttatactgaacaagtgctgaaatcatgagtgcaacattttttcacgtgcagtgcatgagaagctgagggtgggcgaatggtatgtttcgcaatagtcgtgcattgcgtgcgtgacaaacatttactgaacgggttagttgttccgttcagtttacaatcagtttTTAACGTAT--ACATATAAT-----G-TACGCTCAACTCCTCAA-CTAACCTTAC-ACCTT-T-TATCTCACT---TGTAA-AT--C----A----TT-----A----AT--------------------------------------------------------T-----T---G-TACCCAT---AAGAAAA------TCA--TGTCTA-TTT-T-GA-TAAAATGCCAAG-A--TAT----AACA-AA-----AGTTCATTG--AAAGCATTTCGACTTATTTGATCTTAAAAATGACT---ACCCAATTACTCCATTTTTACA-TCAGTATC-GCTTGTGGCC---ACCGCG---GGT-TGCT----AT----------CCAT--------------T--------------ACACGCATCGTCACTCAATCTGCTAAT-CTGTTAGTTGT----TTCTG-TTAACTTTTCTAGTGA---T--T-T--TT---A-TACTGAACATGTGTTGTTACTATGA------GTGCAACAT-TTG-G-T-CACGTGCCATACATAATA-GGTCGAGAGCGGGCGAATAGTATGTTTCGCAATATTTG-GCG-T---TGCGTGCGTGCACG----GACACACAATC--CCAATTAAATGGTGACAATGGATACACAGAT-GATAATTCAGCATA---AAT-A--T-A-TT--TTT----ATGAAATTGGATATGCAATGTAACAAATGTTTAGGAAACAA-AACTG-TAAGGTTTCTTTT-GGAATCGAATGGAGG----AGGTT--TGAACATTT----ATATTCATTTATGTGTTTcgaatacgatacattgt
gi|4 : GAAATAATAAGTGGTAAGGTTTCTTTTTGGAATCGAGT---GTAGCCAGATTCCTGT-CATTTCAAAATA-TTAAGTATGTATTTgt
gi|4 : aatacttatta-TACACTCGATTCCAAAAAGAAACCTTACCACTTA-T-TATTTCACG---TGTAT-GC--C----A----GA-----A----ATGAAA--GG------A--AA-----C--ATG----------------A-----C---T-----TCTTT-TACACAA---AACAAGA------TCA--TTT----TGT-T-GA-TAAAATCTCAAA-A--TTT----AACA-AA-----AGTTCATTA--ATAGCGTTTTAACT-------------------------CCTGATAACTCAATTTTGACAGTCAGTGTC-GCGTGTGGCC---ACTATGCATGACACACA----AT----------GAAC--------------T--------------GCATGCATCGTTACTCAGCCTACCGAT-CTGTTTGTTACCTAGTGCTGGTTTATTTGTCTTG-GT---T--T-TCTTT---A-TACTGAACATGTGTTGTAACCATGA------GTGCAACATGTTT-T-T-CACGTGCAATTCATGATT-GGCCGAGAGCAGGCGAATCTTATATTTCGCAATATAC------T---AGTATGTGTGCACA----GACACACAATC--C---------AGT--CCATGTATAC---G----------CAGCATA---AAT-A--T-A-TC--TTTTTGAATGAAATTGGATATGCAATGTTACTTATATTCAGGAAACAC-AACTG-TCAGCTTTCTTTT-AGAGTTGAGT---GT----ATGTacgtgtatgccagaaatgaaaggaaacatgacttcttttacacaaaacaagatcattttgttgataaaatctcaaaatttaacaaaagttcattaatagcgttttaactcctgataactcaattttgacagtcagtgtcgcgtgtggccactatgcatgacacacaatgaactgcatgcatcgttactcagcctaccgatctgtttgttacctagtgctggtttatttgtcttggttttctttatactgaacatgtgttgtaaccatgagtgcaacatgtttttcacgtgcaattcatgattggccgagagcaggcgaatcttatatttcgcaatatactagtatgtgtgcacagacacacaatccagtccatgtatacgcagcataaatatatctttttgaatgaaattggatatgcaatgttacttatattcaggaaacacaactgtcagctttcttttagagttgagtgtatgtatgcccagttgaa
gi|5 : aatacttattaaaatacatacttaatattttgaaatgacaggaatctggcCTTAC-ACTTT-T-TATTTCACT---TGTAT-GT--TAGCAA----CTAATAAA----AT--AA--GGCATAC-A--AT-----T--G------------------A-----T---T-----T---T-TACATAC---AAC-AGA------T----TTTC-atgcccagttgaa
gi|5 : aatacacataaaaaagtacatgtttaagattcaagatctcacaacgtgcatggcacatctgattgaagtacatctaaAATAAC--CGCTTTCACTGTCA-TGTCAGCGCG---CC---GACTCA---ATC-TACTTCCGAT-----------CAT--------------T--------------G-----ATCGTC--TCAGCCTATCCAT-CTGTAACTTGT----TGCTGTGTAACTTGTCTAGTGT---T--G-T--TT---T-TATCGGACATGTGTTGTAACCATGC------GTGCAATAT-TTG-T-T-CACGGAAAAGTCATGATA-TACCGAAAGTGGTCGAATTATATGTATGGCAATATTCGTGCG-A---TGCGTGCTTGCACG----GACACATACTC--CCAATTAAAT-ATGACAATGGACGCCCAGTT-GACACTTTATCATA---A-----------T--TAT----ATGCAGTC--AC-TG---TGTAACAAATACTAAGGAAAC-A-AACTG-TAAGGTTTCTTTT-CGAGTGGAGT---GT----Accgctgacccttctctcgaggtcatgcacagtcatgtataaacaccggaaatgcagaataaccgctttcactgtcatgtcagcgcgccgactcaatctacttccgatcattgatcgtctcagcctatccatctgtaacttgttgctgtgtaacttgtctagtgttgtttttatcggacatgtgttgtaaccatgcgtgcaatatttgttcacggaaaagtcatgatataccgaaagtggtcgaattatatgtatggcaatattcgtgcgatgcgtgcttgcacggacacatactcccaattaaatatgacaatggacgcccagttgacactttatcataattatatgcagtcactgtgtaacaaatactaaggaaacaaactgtaaggtttcttttcgagtggagtgtacgctacagatgaaa
gi|6 : aatacacataaaaaagtacatgtttaagattcaagatctcacaacgtgcatggcacatctgattgaagtacatctaacttacactttttatttcacttgtatgttagcaactaataaaataaggcatacaattgatttttacatacaacagattttcccgctgacccttctctcgaggtcatgcacagtcatgtataaacaccggaaatgcagTTAACACGTTGAAATATA-T-----G-TACACTGAACTC-AAAA-AATACGTTAC-ACTTT-T-TATTTCACT---TGTAT-GT--T----A----TT-----T----AT--AA--GGGGAAATA--AA-----TGAA------------------A-----T---T-----T---T-CATACAT---AACAAGA------TCA--ATTC-A-CTT-T-AAATAAATTGTCAAA-A--CAG----AACA-AA-----AGTTTGTTT--TTAGCGTTTTGACATATTTGATCTTAAATGAGAC----AACCAAT----------------TC-----C-GCATGTTGCC---GCCGCG---TGC-TGCT----AT----------GCAT--------------TGCACATCTTGCATTGCACGTATTGTAACTAAGCCTGCATAT-CTGTAAGTTTT----TGCTGGTTAACTTGTTTTGTGA---T--T-T--TTTTTA-TACTGAACATGTGCGGTAACCATGA------TTGCAA-AT-TTT-T--------------CATAAC----------GCGTGCGAATCGTATATTTTGATATATTCGTGCG-T---TACGTTCGTGCATG----GACATACAATT--TCAATTAAATGCTGGCAATGAGTACACAGTT-GACAATTCAGCATA---AAT-A--T-A-TT--TTTG---ATGAAATTGGAAATGCAATGTAAAATATATCT---AAACAT-AACTG-TACGGTTTCTCTT-GAAATTGAGT---GT----A------TATA----T----ATA--CAAATATGTGTcgctacagatgaaa
gi|7 : gctat-T-----A-CATACTAAACTCCAAAA-GAAACTTTAC-ACTTT-T-TATTTCACT---TGTAT-GT--C----AGAGATT-----G----AT--AAAAGG------A--AA-----T--A------------------AATCAGT---T-----T---T-TACACAT---AA---GA------TAA--TTTC-A-TTT-TTAA-TAAAATGTCGAA-ACTTATCGTGAACACAACT---AGATCATTTGTATAGCTTTTTTATTTATTTGATCTTAAAGGTGACT---ACCCAATAACTGCATTTTCACAGTCAATATT-GCGCGTGCCC---ACCATG---GGC-TGTT----GT----------GTAT--------------TACACGCATTGTATTGCATGCATTTTCACCCAGCCTACCCAT-CTGTAAGTTGT----TGCATGTTAACTT--------------------TT---A-TACTGAACAT----T-TAACCATGA------GTGCAACAT-TTT-T-T-CACATGCAATTCATTATG-GATCGAGCGCGGGCGAATCCTATGTTTCACAATAATCATGCA-T---TGCGTGGGTG------------CACAATC--CCATTTAAATGTTGGCAATGGATACACAGTT-TATAATTCAGTATA---AAT-A--T-AGTT--TTTTA--ATGACATTAGATATGCAATGTAACAGATATTTAGAAAA-AA-AAC---TAAGGTTTCTTTT-GGAGTTGA
gi|8 : ATAT--ATATGTA-T-----A-TATACT-AATGCCAAAC-AAAAATTTAT-ACCTT-T-TTTGCCACT---TGTAT-GT--CCGAAA----CT-----A----ATCAAG--GG------A--AA-----C--A------------------A-----T---GAAGA-T---T-TACATAT---AACAAAA------TCAA-TTTA-A-TGA-C-AA-TTAAATGTAAAA-A--CAT----AAGA-AA-----AGTGCATTC--ATAGCATTT--ATATATTTGATCTTAAAAGTGACT---ACCCAGTAACTCCATTTTCATAGTCAGTATC-GCGTGTCGCC---ACCGCT---GAC-CGCT----AT----------GCAT--------------T--------------GCAC---TTGTCA--------ACCCAT-CTGTTAGTTGT----TGCTGATTAACTTGTCTTGTGA---T--TGT--TT---AATACTTAACAAGGGTAGTAACCAGGA------GTGCAACAT-TTT-T---CACCTGCGATTCATGATA-AGCTAATAGCGGGCGAATCGTATATTTCGCAATATATATGCA-G---AGCGTATATGCACG----GACACACAATC--CCACTTAAATGATAGCAATTGATACTCAATT-GATAATCCAGCATA---AAT-A--G-C-GT--TTA----ATGAACTT
gi|9 : gtcgtgttgcagTG-T-----A-TAGAGTCAATTCGTAAA-TA----TT-C-ACTTTATATATTTCACT---TGTAT-GA--C----AGAGATT-----A----ATC-AA--GGC-----A--AA-----T--ACATG--------------A-----T---T-----T---TTTACACAT---AACAAAA------TCA--TTTC-G-TTT-T-TA-TTAAATATCAAA-A--TAA----AACA-AA-----TGTTAATTT--ATAGCGTTTTGACATAATTGAATTTAAAAGTA------ACCTAGTTACTTCATTTTCACATCCAATATC-GCGTGTGGACTAGATTAC------C-T-CT----CTC---------ACAT--------------C--------------CCA-ACATTG--ATTGTGTTT---CAT-CTTTTAGTTGT----TGCTGGTTAACTACTCTTATGA---TTGT-T--TT---A-TACTGAACATTTGATGTAACCATGA------ATGCAACA--TTT-T-T-CACGTGCAATTCAT-----GGTCAGTAGCGAGCGAcaagttgtttctgtcggagttgaggagttgagtgta
gi|9 : tatctatttaaacatcgccatttgtAAATAAATAGTGGCAATGAATACCCAATTTGATAAATCAGCATA---GAT-A--T-AATT--GTTCA--ATTAAATTAGTTACGCAATGTAACAACTATTTTGAAAATAA-AActtaaaatatataataaatataaaataaatagtggcaatgaatacccaatttgataaatcagcatagatataattgttcaattaaattagttacgcaatgtaacaactattttgaaaataaaa
blockSeqs : TG C A . A G A C A A TAA . TA CGATATTAATAAAGGGAAATATATTGATTTTACACATATATTAAT CTT T . . A CT T C T A . CT CGTG C CT GT T TGCA G TAG A A C TAG G GCAT A TCCG GCATTGCATT TGTACCCATTGTATT C G T CTAG G T TATTG CT TTT A GTCACT G T AT G A G GCG CACG AT C T TAC T AA CA CA TTGA A A T G T GGA AGCC GATTCC AC CAAA TT T
blockSeqs : . A . . . C . . . A . . . AGCAACTAATAAAATAAGGCATACAATTGATT . . . . . G . . G . . . . . . . T T T AAG A . G . A G . . C TGCACATCTTGCATT T . C . A G TTGTT . TG . . . . TT G . . . . . C . . . . AA . TA T C . . . . . GGTT C . T G
blockSeqs : . C . . . C . . . . . . . AGAGATTGATAAAAGGAAATAAATCAGTT . . . . . C . . T . . . . . . . T C T CAG A . A . T A . . . TACACGCATTGTATT C . T . C G TTGT . . . . . . T G . . . . . C . . . . AG . TA T T . . . . . . A . . A
blockSeqs : . A . . . C . . . . . . . AGAGATTAATAAAGGGAAATTAATGGAT . . . . . C . . . . . . . . . . T T A CAG G . G . G G . . . T C . T . A G TTG . . . . . . T G . . . . . A . . . . AA . CA T C . . . . .
blockSeqs : . T . . . C . . . . . . . CGAAACTAATCAAGGGAAACAATGAAGA . . . . . T . . . . . . . . . . T T T CTG G . G . A G . . . T T . T . G T TT . . . . . . T G . . . . . C . . . . A . G T C . . . . .
blockSeqs : . . . C . . . . . . . AGAGATTAATCAAGGCAAATACATGATT . . . . . C . . . . . . . . . . A T A CAG A . G . T A . . . T C . T . G G TT . . . . . . T A . . . . . A . . . . T . G C T . . . . .
blockSeqs : . . . G . . . . . . . AGAGGTTAATAAAGATAAATAAATTA . . . . . C . . . . . . . . . . T T A TAG G . C . G G . . . T T . A . T G TT . . . . . . T G . . . . . A . . . . G . . A C . . . . .
blockSeqs : . . . A . . . . . . . ATTTATAAGGGGAAATAAATGAAATT . . . . . C . . . . . . . . . . A . A CAT A . G . A G . . . T C . A . G G TT . . . . . . T G . . . . . C . . . . A . . T C . . . . .
blockSeqs : . C . . . . . . . ATTAATAAAGGGAAATAAATGAACA . . . . . C . . . . . . . . . . A . A CA . . G . G T . . . T . . A . G G TG . . . . . . T A . . . . . A . . . . A . . T C . . . . .
blockSeqs : . . . . . . . . . AGAAATGAAAGGAAACATGACT . . . . . A . . . . . . . . . . . T . . . . . A . . . . C . . T . A C TT . . . . . . T T . . . . . A . . . . A . . T T . . .
blockSeqs : . . . . . . AGAGATTAATGAAGGTATT . . . . . C . . . . . . . . . . . . T . G . T . . . . . . . G . . . . . T . . . . A . . . . . . .
blockSeqs : . . . . . ATTAATT . . . . . . . . . . . . . . . . . . . . . . . . . C . . . . C . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . .
blockSeqCons : ***** *** ****** ** ***** CAG *** ** ****
originalCons : TTAACATAT--ANATATA-T-----A-TACACTCAACTCCAAAA-GAAACCTTAC-ACTTT-T-TATTTCACT---TGTAT-GT--C----A----TT-----A----AT--AA--GG------A--AA-----T--A------------------A-----T---T-----T---T-TACACAT---AACAAGA------TCA--TTTC-A-TTT-T-AA-TAAAATGTCAAA-A--TAT----AACA-AA-----AGTTCATTT--ATAGCGTTTTGACTTATTTGATCTTAAAAGTGACT---ACCCAATNACTCCATTTTCACAGTCAATATC-GCGTGTGGCC---ACCGCG---GGC-TGCT----AT----------GCAT--------------T--------------GCACGCATCGTCACTCAGCCTACCCAT-CTGTTAGTTGT----TGCTGGTTAACTTGTCTTGTGA---T--T-T--TT---A-TACTGAACATGTGTTGTAACCATGA------GTGCAACAT-TTT-T-T-CACGTGCAATTCATGATA-GGCCGAGAGCGGGCGAATCGTATGTTTCGCAATATTCGTGCG-T---TGCGTGCGTGCACG----GACACACAATC--CCAATTAAATGGTGGCAATGGATACCCAGTT-GATAATTCAGCATA---AAT-A--T-A-TT--TTT----ATGAAATTGGATATGCAATGTAACAGATATTTAGGAAACAA-AACTG-TAAGGTTTCTTTT-GGAGTTGAGT---GT----AGGTTCCTGTACATTT----ATA-TCAANTATGTGTTT
finalCons : TTAACATAT--ANATATA-T-----A-TACACTCAACTCCAAAA-GAAACCTTAC-ACTTT-T-TATTTCACT---TGTAT-GT--C----A----TT-----A----AT--AA--GG------A--AA-----T--A------------------A-----T---T-----T---T-TACACAT---AACAAGA------TCA--TTTC-A-TTT-T-AA-TAAAATGTCAAA-A--TAT----AACA-AA-----AGTTCATTT--ATAGCGTTTTGACTTATTTGATCTTAAAAGTGACT---ACCCAATNACTCCATTTTCACAGTCAATATC-GCGTGTGGCC---ACCGCG---GGC-TGCT----AT----------GCAT--------------T--------------GCACGCATCGTCACTCAGCCTACCCAT-CTGTTAGTTGT----TGCTGGTTAACTTGTCTTGTGA---T--T-T--TT---A-TACTGAACATGTGTTGTAACCATGA------GTGCAACAT-TTT-T-T-CACGTGCAATTCATGATA-GGCCGAGAGCGGGCGAATCGTATGTTTCGCAATATTCGTGCG-T---TGCGTGCGTGCACG----GACACACAATC--CCAATTAAATGGTGGCAATGGATACCCAGTT-GATAATTCAGCATA---AAT-A--T-A-TT--TTT----ATGAAATTGGATATGCAATGTAACAGATATTTAGGAAACAA-AACTG-TAAGGTTTCTTTT-GGAGTTGAGT---GT----AGGTTCCTGTACATTT----ATA-TCAANTATGTGTTT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 11111 1111111111 55555555555555555555555555555 11111111 111 2222 222222 2222 11
lowQualScore : 99 7 0 4 11111 3 1 3 0 0 3 3 5 555 3 44 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666 555 3 555 0 888888 77 33 3 3 0 3 3 55 7777 3 44444 55 1 8888 4 222 2 3 1 555 1 6666 3 7777 7777777777 66666666666666666666666666666 1 0 3 1 6666 1 5 00000000 33 333 2 888888 3 3 444 1 2 3 555 0 6666 44 3 2 555 2 33 888 66 5555 0 3 1 3 3 3 777 8888 000000 55 1111 33 1
lowQualScore : .. . . . ..... . . . . . . . . ... . .. ..................................................................................... ... . ... . ...... .. .. . . . . . .. .... . ..... .. . .... . ... . . . ... . .... . .... .......... ............................. . . . . .... . . ........ .. ... . ...... . . ... . . . ... . .... .. . . ... . .. ... .. .... . . . . . . ... .... ...... .. .... .. .
lowQualScore : 22 5 1 4 11111 6 4 6 2 2 3 1 7 000 1 22 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888 444 1 444 8 888888 33 22 6 6 9 6 6 00 7777 6 11111 00 2 9999 2 777 8 3 8 888 6 8888 3 1111 9999999999 55555555555555555555555555555 2 5 1 9 5555 4 4 11111111 99 999 9 888888 1 1 777 2 9 1 444 8 5555 22 6 9 000 9 99 888 33 7777 7 8 4 1 3 3 000 5555 333333 88 2222 22 0
consensus : TTAACATAT--ANATATA-T-----A-TACACTCAACTCCAAAA-GAAACCTTAC-ACTTT-T-TATTTCACT---TGTAT-GT--C----A----TT-----A----AT--AA--GG------A--AA-----T--A------------------A-----T---T-----T---T-TACACAT---AACAAGA------TCA--TTTC-A-TTT-T-AA-TAAAATGTCAAA-A--TAT----AACA-AA-----AGTTCATTT--ATAGCGTTTTGACTTATTTGATCTTAAAAGTGACT---ACCCAATNACTCCATTTTCACAGTCAATATC-GCGTGTGGCC---ACCGCG---GGC-TGCT----AT----------GCAT--------------T--------------GCACGCATCGTCACTCAGCCTACCCAT-CTGTTAGTTGT----TGCTGGTTAACTTGTCTTGTGA---T--T-T--TT---A-TACTGAACATGTGTTGTAACCATGA------GTGCAACAT-TTT-T-T-CACGTGCAATTCATGATA-GGCCGAGAGCGGGCGAATCGTATGTTTCGCAATATTCGTGCG-T---TGCGTGCGTGCACG----GACACACAATC--CCAATTAAATGGTGGCAATGGATACCCAGTT-GATAATTCAGCATA---AAT-A--T-A-TT--TTT----ATGAAATTGGATATGCAATGTAACAGATATTTAGGAAACAA-AACTG-TAAGGTTTCTTTT-GGAGTTGAGT---GT----AGGTTCCTGTACATTT----ATA-TCAANTATGTGTTT
Reference ( family-1101 ) : TTAACATAT--ANATATA-T-----A-TACACTCAACTCCAAAA-GAAACCTTAC-ACTTT-T-TATTTCACT---TGTAT-GT--C----A----TT-----A----AT--AA--GG------A--AA-----T--A------------------A-----T---T-----T---T-TACACAT---AACAAGA------TCA--TTTC-A-TTT-T-AA-TAAAATGTCAAA-A--TAT----AACA-AA-----AGTTCATTT--ATAGCGTTTTGACTTATTTGATCTTAAAAGTGACT---ACCCAATNACTCCATTTTCACAGTCAATATC-GCGTGTGGCC---ACCGCG---GGC-TGCT----AT----------GCAT--------------T--------------GCACGCATCGTCACTCAGCCTACCCAT-CTGTTAGTTGT----TGCTGGTTAACTTGTCTTGTGA---T--T-T--TT---A-TACTGAACATGTGTTGTAACCATGA------GTGCAACAT-TTT-T-T-CACGTGCAATTCATGATA-GGCCGAGAGCGGGCGAATCGTATGTTTCGCAATATTCGTGCG-T---TGCGTGCGTGCACG----GACACACAATC--CCAATTAAATGGTGGCAATGGATACCCAGTT-GATAATTCAGCATA---AAT-A--T-A-TT--TTT----ATGAAATTGGATATGCAATGTAACAGATATTTAGGAAACAA-AACTG-TAAGGTTTCTTTT-GGAGTTGAGT---GT----AGGTTCCTGTACATTT----ATA-TCAANTATGTGTTT
gi|1 : -TAGTCCATT---TATATAGA--C----AC---TT-----ATTTCAT--AA--GG------G--AAGATGGT--G------------------AAGT--T---T-----T---T-CATACACTCCAA-AAGAAACCTTTCACTTTTT-A-TTT-C-AC-TCTAACGTCAGAGA--TA-----AATA-AATGGAAAGTTCATTT--ATAGCGTTTTGACGTATTTGATCTTAAAAGTGATC---GTCCAAATACTC------------CAATATC-ACGTGTGGCC---ACCGCG---GGC-AGAT----TT----------ACAT--------------T--------------GCACGCATCGTCACTGAGCCTACCCAT-CTGCTAGTTGT----TGCTGGTTAATTTCTTTTGCGA---C--T-T--TTGTCA-TACTAAACATGTGTTGTAATCATGA------GTGCAAATT-TTT-T-T-CACGTGCAATTTATGATA-GGTCGAGAGCGGGCGAATCGTATGATTTGCAATTCTTGCGTG-T---TGCGTGCGCGTACG----TACACACAATC--CCAATTAAATGGTGACAGTGGTTATCCAGTT-GATAATTCATCATA---ACT-A--T-A-TTG-TTTTA--ATGAAATTGGATATACAATGTAACATATATTAAGGAAACAA-TACCG-TAAGGTATCTTTT-GGAGTTGAGT---GT----A
gi|1 : gTTATCATAC--A-ATATT-TCTTTAA-TACACTCAACTCCAAAA-GATACCTTAC-G-GTA-T-TGTTTC-CTTAATATAT-GTTAC----A----TT-----ttaaagaaatattgtatgataattttctctactactagttgattgttattgtgtgcagcggattgcaataacgttaaatatatcagttat
gi|10 : gtagtccatttatatagacacttatttcataagggaagatggtgaagtttttcatacactccaaaagaaacctttcactttttatttcactctaacgtcagagataaataaatggaaagttcatttatagcgttttgacgtatttgatcttaaaagtgatcgtccaaatactccaatatcacgtgtggccaccgcgggcagatttacattgcacgcatcgtcactgagcctacccatctgctagttgttgctggttaatttcttttgcgacttttgtcatactaaacatgtgttgtaatcatgagtgcaaatttttttcacgtgcaatttatgataggtcgagagcgggcgaatcgtatgatttgcaattcttgcgtgttgcgtgcgcgtacgtacacacaatcccaattaaatggtgacagtggttatccagttgataattcatcataactatattgttttaatgaaattggatatacTTT-TATATTTCGCT---TGTAA-GT--C----AGAGATT-----A----ATG-AA--GG----------------T--A------------------------T---T-----T---T-TACGCAT---AACAAGA------TCA--TCTG-A-TTTCT-AA-TAAAATGTCGAA-A--GAT----ATCA-AA-----AAATCATTA--AAAGATTTTTG-CTCATTTGATCTTAAAAGTGACT---ACCCAGTGACTCTAT------------TATC-GCGAGTG--------------------ACT----AT----------GCAT--------------T--------------GCACGTATTGttttctctactactagttgattgttattgtgtgcagcggattgcaataacgttaaatatatcagttat
gi|10 : ccagacaacaatcgcagcattttCTACTCAT-CTGTT-----------GCTTGTTAATTCTTCTTGTAA---T--T-T--TT---A-AACTGAACATGTGTTGTAACTATGAGTCACTGTGGAACAT-TTT-T-T--ACGTGCAATTCATGATA-GGC---GAACGGG-GAATCGTATAAGTAACAATATTCATGCG-T---TGTGTGTGTGAATG----GGCACACAGTC--CCAAGTAAActgacatttacacgcatgaaataaaccaccgctctgactttattctgtgagaaagcgtgttattcttgtgtcaaatctactcatctgttgcttgttaattcttcttgtaatttttaaactgaacatgtgttgtaactatgagtcactgtggaacattttttacgtgcaattcatgataggcgaacggggaatcgtataagtaacaatattcatgcgttgtgtgtgtgaatgggcacacagtcccaagtaaaag
gi|11 : ccagacaacaatcgcagcattttttttatatttcgcttgtaagtcagagattaatgaaggtatttttacgcataacaagatcatctgatttctaataaaatgtcgaaagatatcaaaaaatcattaaaagatttttgctcatttgatcttaaaagtgactacccagtgactctattatcgcgagtgactatgcattgcacgtattgctgacatttacacgcatgaaataaaccaccgctctgactttattctgtgagaaagcgtgttattcttgtgtcaaatCACCCGGC--ACCTGTGCTGC-AATTGT----TGCTGATTAACTTGTCTTGTGA---TATTGT--TT---A-TATTGAACATGTGTTGCAACTATG--------TTTTATGT-TTT-AAT-CACGATTAATCAAT-ATAAGGCCGAGAGCGAGCGAAAAGTATGTCTCGCAATATCCGTGCGGTGCGTGCGTGCGTGCACG----GACACATAATC--CCAATTAAATGCTGGTAATGGATACCCAGTA-AATAATGCTGCATA---AAT-A--TCA-TTCATTTG---ATAGAAATGGATATACAATGTAACAGATATTAAGGAAAAAA-CACTG-TAAGGTATCTTTT-GGAGTTTAAT---AT----A---CTCTATACATTT----ATA-TCAATCAag
gi|12 : ggttgttttaatacatgacaacgGCCTACTCGT-CAGTCACTTGT----TACTGCTGAACTT---------------T-T--TA---A-TACTGAAAATGTGTTTTAACCATGA------GTGCAACGT-TTT-T-TTCGCTTGCAATTCATGGTA-GACCAAGAGTGTGCAAAGCGTATGTTTCGCAATATTCATGCA-T---TTCATGAATGCACA----GACACACAATC--CCAATTAAATGGTGACAATGGATACCCAGTT-GATAATTCAGCATA---CAT-A--TAA-TT--TTTTA--ATGAAATTTGATATGCATTGTAAAAGATTAATAGGAAACAA-AACTG-TAAGGTTTCTTTT-CAAGTTGAGT---GC----AGGTTCgtaccatatcttgtatcagttcagcagatgttatacttggcttcactagtgta
gi|13 : tt-T--TT---A-TACTGAACCTGTTTTGTAACCATGA------GTGCAATAT-TTTTT-T-CACGTGCAATTTATGATA-GGTCGGAAACAGGCGAGTCGTATGTTTCGAAATATCCGTGTG-T---AGCGTGCGTGCACG----TACACACAATA--ATAGTTAAA-GGTGACACTCGATAGCCAGGT-AATAATTCAGCATA---AAT-A--T-A------------ATTAA---GGA----------AACAAATA----------------TG-TAAGGTTTCTTCT-GGAGTTCAGT---GT----Aaatgaaagaataacatcacaaatatttaataaaaaataaatttgatttttcagtt
gi|13 : tttgAAGATAT--ACCTAGA-T-----AATACACTGAACTCCAGAA-GAAACCTTAC-A-TAT-T-TGTTTC-CT---Tttatctaggtatatcttcacttagttttgttaaaaaacgttaaatattacgacagtta
gi|14 : tttgtttatactgaacctgttttgtaaccatgagtgcaatatttttttcacgtgcaatttatgataggtcggaaacaggcgagtcgtatgtttcgaaatatccgtgtgtagcgtgcgtgcacgtacacacaataatagttaaaggtgacactcgatagccaggtaataattcagcataaatataatt----A----TT-----A----AT--AAAGGG------A--AA-----T--A------------------A-----A---TGAACAT---T-TACACAT---AACAAGA------TAG--ATTC-A-TTT-TTAA-TAAAATGTCAAA-A--CAT----AACA-AA-----GGTGCATTT--ATAGCGTTTTGACTTATTTGATCTTAAAAGTGAAC---ACCAGACTACTCCATTTGCTTAGTTAATATC-GCGTATGCCC---GCCGCG---GGC-TGCT----ATGCATTGCATTGCAT--------------T--------------GCATGCATCGTCACTTAGTATACCCGT-CTGCTAGTTGT----TGCTGATTAACTTGTCTTGTGA---T--T-T--TTTG-A-TACTGAACATGTGTTGTcacttagttttgttaaaaaacgttaaatattacgacagtta
gi|15 : tcagag-TACACTCAACACCGAA--TAAACGTTAC-ACTTT-T-TTTTTTACT---TGTAT-GA--C----AGAGGTT-----A----AT--AA--AG------ATAAA-----T--A------------------AA----T---TA----T---T-TACACAT---AACACGA------TCT--TTTC-A-TTT-TGAA-TAAAATGCCAAA-T--CAT----AACA-AA-----AGTTAATTT--ATAGCATTTTGACTTTTTTGATCTCAAAAGTTACT---ACCCAATTACTCCAATGTCAAAGTCAATATC-GCAAGGGGCC---ACCACA---GGC-TACT----GT----------
gi|16 : TCATGATA-GACCGAGAGCAGGTGAATCGCATGTTTCGCAGCATTCGTGCG-T---TGTGTGTGTGCACGCACGGACACGCAATC--CCAATTAAATGGTGGCAGTAGATACACAGTT-GATAATTCAG-------AAT-A--T-T-TT--TTT----
gi|17 : tcttaaaccgaaacacgatctatgtgtaacttgctatcggacaataaatcactcaaaattagtttaatacgacattaATG-C-----A-TACACTCATCTCTAAAA-GGAACTTTAC-ACTTT-T-TATTTGACT---CGGAT-GG--CCGATA----TT-----A----AT--AAAGGG------A--AA-----T--ATATTGATTTTACACATATA-----T---TAAT--T---T-TACACAT---AATAAGA------TCA--TTTT-ATTTT-T-AA-TAAAATGTCAAA-A--TAT----AACA-AA-----ATTTTATTT--ATAttttttatgaa
gi|18 : aaaagatatttaactcT--TTA----ATGCAATTGAATATGAAATGTAAGAGATATT-AAGAAATAA-AACTG-TTAGGTTTCTTTC-TGAGTTTAGT---GT----A
gi|19 : CCAGTT-GATAATTCAGCATA---AAT-AAAT-G-TT--GTT----ATGATATTGGATATGCAATGTAGCCGATATTTAGGAtattaacagtatacaggtagatttgttctactattgttta
gi|2 : TTAATATAT--AACT-TA-T-----A-TACACTCAATTACAAAC-GAAACCTTAC-ACTTG-T-TATTTCACT---GGTAT-GT--CAGAGA----TT-----A----AT--AAAGGG------A--AAT----T--A------------------A-----TGGAT-----T---T-TACACAG---AACAGGA------TCA--TATC-
gi|2 : taATCTTGAAAGTGACTGCAACTCAATAACTCCATTTTCACAGTCAATATC-GCGTGTGACC---ACTTCG---GGC-TGCT----AT----------GCATTGTACCCATTGTATT--------------GCACGCATCGTCACTCAGCCTACCCAA-CTGTTATTTGT----TGCTGGTCAACGTGTCTTGTGATTGT--T-T--TT---A-TACTGAACAAGTGCTGAAATCATGA------GTGCAACAT-TTT-T-T-CACGTGCAGTGCATGAGA-AGCTGAGGGTGGGCGAATGGTATGTTTCGCAATAGTCGTGCA-T---TGCGTGCGTG-ACA----AACAttgaaagtgactgcaactcaataactccattttcacagtcaatatcgcgtgtgaccacttcgggctgctatgcattgtacccattgtattgcacgcatcgtcactcagcctacccaactgttatttgttgctggtcaacgtgtcttgtgattgtttttatactgaacaagtgctgaaatcatgagtgcaacattttttcacgtgcagtgcatgagaagctgagggtgggcgaatggtatgtttcgcaatagtcgtgcattgcgtgcgtgacaaacatttactgaacgggttagttgttccgttcagtttacaatcagtttataatcatccaattaaatagcaataatggatacacagttgtttaatcagcatatacaattatattgtggaattgaatatgcaatatatcagatatttaagaaacaaaactgtaaggctacttttggagttgacgaatacgatacattgt
gi|2 : tattaatatataacttatatacactcaattacaaacgaaaccttacacttgttatttcactggtatgtcagagattaataaagggaaattaatggattttacacagaacaggatcatATAATCATCCAATTAAATAGCAATAATGGATACACAGTT-GTTTAATCAGCATATACAATTA--T-A-TT---------GTGGAATTGAATATGCAATATATCAGATATTTAAGAAACAA-AACTG-TAAGGCTACTTTT-GGAGTTGAtttactgaacgggttagttgttccgttcagtttacaatcagtttataatcatccaattaaatagcaataatggatacacagttgtttaatcagcatatacaattatattgtggaattgaatatgcaatatatcagatatttaagaaacaaaactgtaaggctacttttggagttgacgaatacgatacattgt
gi|3 : tattaatatataacttatatacactcaattacaaacgaaaccttacacttgttatttcactggtatgtcagagattaataaagggaaattaatggattttacacagaacaggatcatatcttgaaagtgactgcaactcaataactccattttcacagtcaatatcgcgtgtgaccacttcgggctgctatgcattgtacccattgtattgcacgcatcgtcactcagcctacccaactgttatttgttgctggtcaacgtgtcttgtgattgtttttatactgaacaagtgctgaaatcatgagtgcaacattttttcacgtgcagtgcatgagaagctgagggtgggcgaatggtatgtttcgcaatagtcgtgcattgcgtgcgtgacaaacatttactgaacgggttagttgttccgttcagtttacaatcagtttTTAACGTAT--ACATATAAT-----G-TACGCTCAACTCCTCAA-CTAACCTTAC-ACCTT-T-TATCTCACT---TGTAA-AT--C----A----TT-----A----AT--------------------------------------------------------T-----T---G-TACCCAT---AAGAAAA------TCA--TGTCTA-TTT-T-GA-TAAAATGCCAAG-A--TAT----AACA-AA-----AGTTCATTG--AAAGCATTTCGACTTATTTGATCTTAAAAATGACT---ACCCAATTACTCCATTTTTACA-TCAGTATC-GCTTGTGGCC---ACCGCG---GGT-TGCT----AT----------CCAT--------------T--------------ACACGCATCGTCACTCAATCTGCTAAT-CTGTTAGTTGT----TTCTG-TTAACTTTTCTAGTGA---T--T-T--TT---A-TACTGAACATGTGTTGTTACTATGA------GTGCAACAT-TTG-G-T-CACGTGCCATACATAATA-GGTCGAGAGCGGGCGAATAGTATGTTTCGCAATATTTG-GCG-T---TGCGTGCGTGCACG----GACACACAATC--CCAATTAAATGGTGACAATGGATACACAGAT-GATAATTCAGCATA---AAT-A--T-A-TT--TTT----ATGAAATTGGATATGCAATGTAACAAATGTTTAGGAAACAA-AACTG-TAAGGTTTCTTTT-GGAATCGAATGGAGG----AGGTT--TGAACATTT----ATATTCATTTATGTGTTTcgaatacgatacattgt
gi|4 : GAAATAATAAGTGGTAAGGTTTCTTTTTGGAATCGAGT---GTAGCCAGATTCCTGT-CATTTCAAAATA-TTAAGTATGTATTTgt
gi|4 : aatacttatta-TACACTCGATTCCAAAAAGAAACCTTACCACTTA-T-TATTTCACG---TGTAT-GC--C----A----GA-----A----ATGAAA--GG------A--AA-----C--ATG----------------A-----C---T-----TCTTT-TACACAA---AACAAGA------TCA--TTT----TGT-T-GA-TAAAATCTCAAA-A--TTT----AACA-AA-----AGTTCATTA--ATAGCGTTTTAACT-------------------------CCTGATAACTCAATTTTGACAGTCAGTGTC-GCGTGTGGCC---ACTATGCATGACACACA----AT----------GAAC--------------T--------------GCATGCATCGTTACTCAGCCTACCGAT-CTGTTTGTTACCTAGTGCTGGTTTATTTGTCTTG-GT---T--T-TCTTT---A-TACTGAACATGTGTTGTAACCATGA------GTGCAACATGTTT-T-T-CACGTGCAATTCATGATT-GGCCGAGAGCAGGCGAATCTTATATTTCGCAATATAC------T---AGTATGTGTGCACA----GACACACAATC--C---------AGT--CCATGTATAC---G----------CAGCATA---AAT-A--T-A-TC--TTTTTGAATGAAATTGGATATGCAATGTTACTTATATTCAGGAAACAC-AACTG-TCAGCTTTCTTTT-AGAGTTGAGT---GT----ATGTacgtgtatgccagaaatgaaaggaaacatgacttcttttacacaaaacaagatcattttgttgataaaatctcaaaatttaacaaaagttcattaatagcgttttaactcctgataactcaattttgacagtcagtgtcgcgtgtggccactatgcatgacacacaatgaactgcatgcatcgttactcagcctaccgatctgtttgttacctagtgctggtttatttgtcttggttttctttatactgaacatgtgttgtaaccatgagtgcaacatgtttttcacgtgcaattcatgattggccgagagcaggcgaatcttatatttcgcaatatactagtatgtgtgcacagacacacaatccagtccatgtatacgcagcataaatatatctttttgaatgaaattggatatgcaatgttacttatattcaggaaacacaactgtcagctttcttttagagttgagtgtatgtatgcccagttgaa
gi|5 : aatacttattaaaatacatacttaatattttgaaatgacaggaatctggcCTTAC-ACTTT-T-TATTTCACT---TGTAT-GT--TAGCAA----CTAATAAA----AT--AA--GGCATAC-A--AT-----T--G------------------A-----T---T-----T---T-TACATAC---AAC-AGA------T----TTTC-atgcccagttgaa
gi|5 : aatacacataaaaaagtacatgtttaagattcaagatctcacaacgtgcatggcacatctgattgaagtacatctaaAATAAC--CGCTTTCACTGTCA-TGTCAGCGCG---CC---GACTCA---ATC-TACTTCCGAT-----------CAT--------------T--------------G-----ATCGTC--TCAGCCTATCCAT-CTGTAACTTGT----TGCTGTGTAACTTGTCTAGTGT---T--G-T--TT---T-TATCGGACATGTGTTGTAACCATGC------GTGCAATAT-TTG-T-T-CACGGAAAAGTCATGATA-TACCGAAAGTGGTCGAATTATATGTATGGCAATATTCGTGCG-A---TGCGTGCTTGCACG----GACACATACTC--CCAATTAAAT-ATGACAATGGACGCCCAGTT-GACACTTTATCATA---A-----------T--TAT----ATGCAGTC--AC-TG---TGTAACAAATACTAAGGAAAC-A-AACTG-TAAGGTTTCTTTT-CGAGTGGAGT---GT----Accgctgacccttctctcgaggtcatgcacagtcatgtataaacaccggaaatgcagaataaccgctttcactgtcatgtcagcgcgccgactcaatctacttccgatcattgatcgtctcagcctatccatctgtaacttgttgctgtgtaacttgtctagtgttgtttttatcggacatgtgttgtaaccatgcgtgcaatatttgttcacggaaaagtcatgatataccgaaagtggtcgaattatatgtatggcaatattcgtgcgatgcgtgcttgcacggacacatactcccaattaaatatgacaatggacgcccagttgacactttatcataattatatgcagtcactgtgtaacaaatactaaggaaacaaactgtaaggtttcttttcgagtggagtgtacgctacagatgaaa
gi|6 : aatacacataaaaaagtacatgtttaagattcaagatctcacaacgtgcatggcacatctgattgaagtacatctaacttacactttttatttcacttgtatgttagcaactaataaaataaggcatacaattgatttttacatacaacagattttcccgctgacccttctctcgaggtcatgcacagtcatgtataaacaccggaaatgcagTTAACACGTTGAAATATA-T-----G-TACACTGAACTC-AAAA-AATACGTTAC-ACTTT-T-TATTTCACT---TGTAT-GT--T----A----TT-----T----AT--AA--GGGGAAATA--AA-----TGAA------------------A-----T---T-----T---T-CATACAT---AACAAGA------TCA--ATTC-A-CTT-T-AAATAAATTGTCAAA-A--CAG----AACA-AA-----AGTTTGTTT--TTAGCGTTTTGACATATTTGATCTTAAATGAGAC----AACCAAT----------------TC-----C-GCATGTTGCC---GCCGCG---TGC-TGCT----AT----------GCAT--------------TGCACATCTTGCATTGCACGTATTGTAACTAAGCCTGCATAT-CTGTAAGTTTT----TGCTGGTTAACTTGTTTTGTGA---T--T-T--TTTTTA-TACTGAACATGTGCGGTAACCATGA------TTGCAA-AT-TTT-T--------------CATAAC----------GCGTGCGAATCGTATATTTTGATATATTCGTGCG-T---TACGTTCGTGCATG----GACATACAATT--TCAATTAAATGCTGGCAATGAGTACACAGTT-GACAATTCAGCATA---AAT-A--T-A-TT--TTTG---ATGAAATTGGAAATGCAATGTAAAATATATCT---AAACAT-AACTG-TACGGTTTCTCTT-GAAATTGAGT---GT----A------TATA----T----ATA--CAAATATGTGTcgctacagatgaaa
gi|7 : gctat-T-----A-CATACTAAACTCCAAAA-GAAACTTTAC-ACTTT-T-TATTTCACT---TGTAT-GT--C----AGAGATT-----G----AT--AAAAGG------A--AA-----T--A------------------AATCAGT---T-----T---T-TACACAT---AA---GA------TAA--TTTC-A-TTT-TTAA-TAAAATGTCGAA-ACTTATCGTGAACACAACT---AGATCATTTGTATAGCTTTTTTATTTATTTGATCTTAAAGGTGACT---ACCCAATAACTGCATTTTCACAGTCAATATT-GCGCGTGCCC---ACCATG---GGC-TGTT----GT----------GTAT--------------TACACGCATTGTATTGCATGCATTTTCACCCAGCCTACCCAT-CTGTAAGTTGT----TGCATGTTAACTT--------------------TT---A-TACTGAACAT----T-TAACCATGA------GTGCAACAT-TTT-T-T-CACATGCAATTCATTATG-GATCGAGCGCGGGCGAATCCTATGTTTCACAATAATCATGCA-T---TGCGTGGGTG------------CACAATC--CCATTTAAATGTTGGCAATGGATACACAGTT-TATAATTCAGTATA---AAT-A--T-AGTT--TTTTA--ATGACATTAGATATGCAATGTAACAGATATTTAGAAAA-AA-AAC---TAAGGTTTCTTTT-GGAGTTGA
gi|8 : ATAT--ATATGTA-T-----A-TATACT-AATGCCAAAC-AAAAATTTAT-ACCTT-T-TTTGCCACT---TGTAT-GT--CCGAAA----CT-----A----ATCAAG--GG------A--AA-----C--A------------------A-----T---GAAGA-T---T-TACATAT---AACAAAA------TCAA-TTTA-A-TGA-C-AA-TTAAATGTAAAA-A--CAT----AAGA-AA-----AGTGCATTC--ATAGCATTT--ATATATTTGATCTTAAAAGTGACT---ACCCAGTAACTCCATTTTCATAGTCAGTATC-GCGTGTCGCC---ACCGCT---GAC-CGCT----AT----------GCAT--------------T--------------GCAC---TTGTCA--------ACCCAT-CTGTTAGTTGT----TGCTGATTAACTTGTCTTGTGA---T--TGT--TT---AATACTTAACAAGGGTAGTAACCAGGA------GTGCAACAT-TTT-T---CACCTGCGATTCATGATA-AGCTAATAGCGGGCGAATCGTATATTTCGCAATATATATGCA-G---AGCGTATATGCACG----GACACACAATC--CCACTTAAATGATAGCAATTGATACTCAATT-GATAATCCAGCATA---AAT-A--G-C-GT--TTA----ATGAACTT
gi|9 : gtcgtgttgcagTG-T-----A-TAGAGTCAATTCGTAAA-TA----TT-C-ACTTTATATATTTCACT---TGTAT-GA--C----AGAGATT-----A----ATC-AA--GGC-----A--AA-----T--ACATG--------------A-----T---T-----T---TTTACACAT---AACAAAA------TCA--TTTC-G-TTT-T-TA-TTAAATATCAAA-A--TAA----AACA-AA-----TGTTAATTT--ATAGCGTTTTGACATAATTGAATTTAAAAGTA------ACCTAGTTACTTCATTTTCACATCCAATATC-GCGTGTGGACTAGATTAC------C-T-CT----CTC---------ACAT--------------C--------------CCA-ACATTG--ATTGTGTTT---CAT-CTTTTAGTTGT----TGCTGGTTAACTACTCTTATGA---TTGT-T--TT---A-TACTGAACATTTGATGTAACCATGA------ATGCAACA--TTT-T-T-CACGTGCAATTCAT-----GGTCAGTAGCGAGCGAcaagttgtttctgtcggagttgaggagttgagtgta
gi|9 : tatctatttaaacatcgccatttgtAAATAAATAGTGGCAATGAATACCCAATTTGATAAATCAGCATA---GAT-A--T-AATT--GTTCA--ATTAAATTAGTTACGCAATGTAACAACTATTTTGAAAATAA-AActtaaaatatataataaatataaaataaatagtggcaatgaatacccaatttgataaatcagcatagatataattgttcaattaaattagttacgcaatgtaacaactattttgaaaataaaa