lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111 2222222222222222222222222222222222222222222222 11111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111
lowQualScore : 00000000000000000000000000000000000000000000000000000000000000000000000000 1 11 111 444444444444444 1111 22222 222222222222 1111 1 1111111111111111111111111111111111111111111111 11111 222 1111111 1 5555555555555555555555555555555 11 2222 11111 777777777777777777777777777777777777 2 11 1 2 11111 00000000000000000000000000000000000000000000000000000000000000000000000000000 1 11111111111111111111111111111111111111111111111111 66666666666666666666666666666 1 1 1 1
lowQualScore : 3 777 44444444444444444444444444444444444444444444444444444444444444444444444444 666666666 33 6666 77777 555 5 2 0 3 66 55 5 8888 7 888 444 888888888888888 1 1111 3 3 0 3 44444 3 3 3 666666666666 5555 0 5 6 6666 0 1 4 7777777777777777777777777777777777777777777777 88 4 4 66 99 66 99999 2 888 4 22 555 5 8888888 4 7777777777777777777777777777777 0 9999 33 5 3333 0 5 11111 66 8 6 1 000000000000000000000000000000000000 5 4 8 4 4 66 0 5 4 0 0 8 6 4 55 11111 2 0 11 88888888888888888888888888888888888888888888888888888888888888888888888888888 3 2 2 6 3 88888888888888888888888888888888888888888888888888 4 1 9999 88888888888888888888888888888 2 3 3 3 5 3 6 5
lowQualScore : . ... .......................................................................... ......... .. .... ..... ... . . . . .. .. . .... . ... ... ............... . .... . . . . ..... . . . ............ .... . . . .... . . . .............................................. .. . . .. .. .. ..... . ... . .. ... . ....... . ............................... . .... .. . .... . . ..... .. . . . .................................... . . . . . .. . . . . . . . . .. ..... . . .. ............................................................................. . . . . . .................................................. . . .... ............................. . . . . . . . .
lowQualScore : 1 222 22222222222222222222222222222222222222222222222222222222222222222222222222 666666666 99 1111 11111 000 8 3 2 1 00 55 7 5555 9 222 000 888888888888888 3 7777 3 3 2 3 99999 3 0 3 222222222222 8888 4 2 8 2222 3 6 3 8888888888888888888888888888888888888888888888 11 3 4 88 22 99 55555 0 888 1 33 333 7 6666666 0 7777777777777777777777777777777 7 1111 33 7 9999 5 0 11111 11 2 0 4 555555555555555555555555555555555555 0 0 0 0 0 55 9 5 0 3 1 8 5 3 00 00000 6 8 66 77777777777777777777777777777777777777777777777777777777777777777777777777777 6 8 7 0 6 33333333333333333333333333333333333333333333333333 4 0 4444 66666666666666666666666666666 1 9 5 3 0 7 7 0
consensus : AGGCAGGANTAACGGACCTTGGTTGGT--CCCT------------C-----------------N-----ACCCCA-------T---CTG---ATT-----------TTTTTTT----T----T--C----A-----A---TTNT-TTT-TCAATCC--ATCGTAT----ANAACAA-ACA---AACAAA-AAAG-----TAA--AAAAAA----A-G-TGAC-AAACATA--AGTT-GAGTAAAG-G-------CCTTTTACTTCAA-GGNACGGCCCACATACCCCCAACTGTCTTCAGACACCCGCTGTG-C-AAAAACTATAACGAATATTCTTATACGGCATACAC----T----A---CC-A-AGGAAGC---AGNAG-------GGTATTACGTG-ACAAA-ATAAGCCCAACAACA--GAA---ATATT---GAGCCAGCCGTTCCTG-AATAAG-ACC-------CTTTCAAATCGCCCATT--N-NGAG-CTAANA-AGT-----N--N---AGTCG---TAAATAAAGTGGC-ATAAATTTTAA-CGGGTT-----AT--TACAAGACTAAAACGGCTCAACACAACTGTAG---NC-TGG-T-A-T------G----A---CA---TGTTTCAAGGNAAGTCAACAACAAA-TGAACTC-T-TT-CATGCTCACTTACTTATT-TCAATATCGTCT-AAAACAGCTGATNA--GAN----CAATTTCCTAATCCGTAAC----GAACAT----G-CTGAA-----------ATTTTCT---ATT----TG------AATT---CTGT--A------TT-ATGTATNAAGCGCGCTGATTGGT-CCT----TC------------CTCGGGG--AAGTG----TATTT---------AGG-ACCAATCAGCGCGCTT----CATAC----AT-AA-----T-TA-C-GAATTNAAATAGAAAATGGCAGACNTTGTTCAACATGTTCGTTACGGATTA-GAAAANTGGTCTCATA
Reference ( gi|1 ) : AGGCAGGAGTAACGGACCTTGGTTAGT--TCCT------------C-----------------A-----ACCCCA-------T---CTG---ACT----------GTTTTTTT----T----T--C----A-----A---TTCT-TTT-TCGGTCC--ATCGTAT----AAAACAA-ACA---AACAAACAAAG-----CAA--AAAAAA----A-G-TGAC-AAACATA--AAAT-GAATAAAG-G-------CTGTATACTTCAA-GACACAGCCCACATACCACCAGCTGTCTTCAGACACCCGCTGTG-C-AAAAACTATAACGAATATTCTTATACAGCATACAC----T----A---CT-A-AGGAATTTTCAATAGT-TCCTTGGTATAACGTA-ATAAA-ATAAGCCTAACCACA--GAA---AAACT---GAGTCAGCCGTTCCTG-A-TAAG-ACC-------CTTTCAAATCGCCTATT--T-GGAG-CTAATA-AAT-----A--A---AGTCG---TAACTAAAGTGGT-ACAACTTTTAA-CGGATT-----AT--TACAAGACTAAACCGGCCCAACACAACTGTAA---GT-TGA-T-A-T------G----T---TA---TGTTTCAAGGAAAGTCAACAACAAA-TGAA-TC-T-TG-CATGCTCACTTACTAATT-TCAATATCATCTAAAAACAGCTCATGA--GAC----CAATTTCCTAATCCATAAC----AAACAT----G-ATGAA-----------ATTTTCT---ATT----TG------AATT---CTGT--A------TT-ATGTATCAAGGGCACTGACTGGT-CCT----TG------------CTCGGGA--AAGTG----TATTTT--------AGG-ACCAATCAGCGCACTT----CATTT----AT-AA-----T-TA-T-GACTTGAAATAGAAAATGGCAGACTTTGTTTAACATCTTTGTTACGGATTA-GAACACTGGTGTCATAGACCATATTT
gi|3 : AGGCAGGAGAAACGGACTTTGGTTGGTCCTCCT------------T------------------------CCCAA-------T---CAG---A--------------TTATAT----T----T--C----A-----AAACTTAT-TTT-TC
gi|8 : cAGGCCGGATTAATGGACCTTGGTTGAT--CCCT------------CCCTACC-----------ACCCTTACCCCA-------TACCCCA---AAT-----------TTTTTTT----G----T--C----A-----A---TTTT-TTTGTCAAATC--TTTGTTC----AATCCAT-CCA---AAAAATAAAAG-----TAA--AATAAATGATA-G-TGAG-AAACATA--TATTTGAGTAAAG-G-------CCTTTCACTTCAACGA-ACGGCCCATATACC-CCAACTGTCTTTACACACCGGCTGTG-C-AAAAACTATTAAGATTATTCTTACACGGCATGCAC------------------AGAAAGCTAGAGGA--------GGTATTACGTG-ACAAA-ATAAGCCTAACATCA--GAA---CTATC---GAGCCAGCCGTTCttgtttttttcttttttttttttttcaaattcacatatattttcaattatatgttcaatccatcatacacattacacgaagaaagaaacaaaaatggtaacaaacataaagctttttacttcgaagcacagcccatataccccaactgtcttcagacaaccgctttgcaaaaactatgacgaatattcttatacgaaatgcttagccaggtggtcgatgtattacgtgacaaaataagcccaacaacagaaatattgagccaaccattcctgaataagaccctttcaaatcgcccatttaggtgctaaaatgtttagtcgtaaataaagtgacacacattttaacggattattgcaagactaaaccggctcaacacaactgtagtctggtatgacaacgtcatgtttcaaggaaagtcaacaacaaatgaactctttcatgctcactttcttattttaatatcatctaaaacagctcataaaata
gi|9 : AGACAGGAATAACGGACATTGG-------TCCC------------C-----------------C-----ACCCCT-------T---C-----ATA----------TTTTTTTT----T----T--C----AGAAATA---TTTT-TTT-a
gi|15 : cacAGGCAGGATTAATGAACCTTGGATGGT--CCCT------------CTACCACCCCCTCCCTC-AT----ACCCCAATTTT--T---TTGTCAAAT----------GTTTTTTG----G----T--C----A-----A---ATCTATGT-TCAATCC--ATC---C----AAAACAC-CCATTTAACAAAAAAA-------AAT-AAAAAA----A-A-T-AG-AAACATT-----T-GAGTAAAG-G-------CCTTTCACTTCAACGA-ACGGCCCATATGCCCCCAACTGTCTatatatatatatttttttcaatctgtgttcaatccacaggacgtatcttacttatcttttggatagctatcgatataaagtaaattaactacatatagctatccaaaaggtatagtaagatagggcctgtggttcaatcaacaaagtttaaaacataagttgagtaaaacctttttactactagcaacagtccacatacccccaactgttttctgatacccgctgtgtaaaaactataacgaatat
gi|30 : acAGACAGAAGTAACGGACCTTGGCTAGT--ACCT------------T-----------------------ACCCCA-------T---CTG---AC--------------TTTTT----T----C--C----A-----A---TTGT-TTT-TC
gi|18 : ccatAAGCAGGATAAATGGACCTTGGTTGGT--CCCT------------CTCTACCACCCCCCCCCCAT----ACCCCAATTTCTTT---TTC---ATT----------TTTTTTTT----T----TGTC----A-----A---ATCTATGT-TCAATCC--ATC---C----AAAACAC-CCATTTAACAAA------------A--AAAAAT----A-G-TGAG-AAACATA--aaattgt
gi|31 : acAGGCAGGCGTAACGGACATTAGTTAGT--ACCG------------C-----------------T-----GCCCCG-------T---CTG---A-------------TTTTTTtatt
gi|22 : attcacAGGCAGGATTAGTTGACCTTGGTTGGT--CCCT------------C-----------------cc
gi|21 : acAGCCAGAAATAACGGGCTGTTGTTATT--CTCT------------C-----------------T-----ATCCCG-------T---CT---------------------TTTT----T----T--C----A-----C---TTTT-TTT-cctaccactccaaccgcccagttacaaatttgtggttatatattttattttaaaattaaatatgcgcagatcctctcaatacac
gi|2 : gaccacGGCAGTAGCAATGAACCATAGTCAGT--TCCC------------C-----------------C-----ATTCTA-------T---CTG---ATT-----------TTTTTTT----TAAAAT--CTTAAA-----A---TTTA-TGT-TCAATCC--ATCGTAT----ATAACAA-AGA---AACGAACAAAAAATGATAA--TAATAA----A-G-TGAC-AAACATC--AGTT-GAGAAAAG-G-------CATTTTACTTCAA-AGCACAGCCCACATACCACCAACTGTCTTCACACACCCGCTGT-----------ATAACGAATGTTCTGATACGGCATACAC----AGACAA---CC-AGAGGAG-----AA-------------ATCACGTG-ACAAA-ATAAGCCGAACGACA--GAA---ATATT---GAGCCAACCGTTCATG-AATAAG-ACC-------CTTTCAAATCGCCCTTTAAT-GGAG-CTAAAA-AGT-----T--A---AGTCG---TAAATAAAGTTGC-ACAAATATTTA-CGGATT-----AT--TACAAGACAGAACTGACTCAACACAACTGTAG---TC-TGG-T-ACT------A----CAA-CA---TTTTTCAAGGAGAGTCAACAACAAA-TGAACTC-T-TT-CATGCTCACTTACCTATT-TAAATATCATCT-AAAACAGCTCATGA--GAC----AGTTTTCCTAAATCGTAAC----AATCAA----A-TTGAACAATGTCTCCCATTTTCT---ATT----TG------AATT---TTGT--A------TT-GTACATGAAGCACGCTGATTGGT-CCTAAAATACCCCCACCCCACCCCGAGA--A--TG--------------------G-ACCAATCAGTGCGCTT----AATAC----AT-AA-----T-caaaattttatcaaaattttctttaaaattttttttcaattctatgttcaatccatcct
gi|16 : GCATGAGTAACGGACCTTGGTTAGT--TCCC------------C-----------------T-----ATCTCA-------T---TTG---A--------------TTTTTT----T----T--C----A-----A---TTTT-GTT-TC--TCCAAAT-GTATGTTCAGTTCAA-TCT---ATCAA--AGAT-----CTATTAAACAA----A-GATGCCAAAACATATTAAGT-ATATTTAT-GTATTTTATTGT-TACTTCAA-GGCATAGCTCACATACCCACAACTG
gi|5 : acatGGATTAATGGACCTTGGTTGGT--CTCTCCCTACCACACCC-----------------A-----CCCCCACAC----C---CCA---ATT----------A--TTTTT----T----T--C----A-----A---TT
gi|28 : GGTTAGT--CCCC------------C-----------------T-----ACCTCA-------T---CTG---ATTTTAGTTTTCAGTTTTTTTCTTCT----T--C----A-----G---ATCT-GTG-TTGTTCC--ATCATAT----ATAATAtatatatatatttgagtaaaggcctttcacttcaacgaacggcccatatacccccaactgtctttagacacccgctgtggcaaaaactattaaaactattcttacacggcatacacagaaagctagaggaggtattacgtgacaaaataagcctaacattagaactatcgagccagccgttcaggaataagaccctttcaagtcgcaacttcagcggctaaatcgcttaaacgacaataaagtggcatattattttacgggttaatacaggactaaaacggctcgaaacaactgtagcctgtgattataacacattttaaggtaagtcaacatcaaattaattctttcgtgctcacttacttatttcattatcgcctagaacagctgatcatcggccattccagaataacga
gi|17 : GTTAGT--CTCC------------C-----------------C-----ACCCCT-------T---CTG---ATT----------TTTTTTTC----T----T--C----A-----A---TT-T-TTT-TTAATCC--ATTGTAT----ATAACAATAAA---AACttagggtcaaaacat
gi|29 : gcagttaaaaatTTTTT----T----T--C----A-----A---TTCTATGT-TCAATCC--ATCCTAT----ATAACAA-ACA---AACAGACA---------TT--AAAATC----C-G-TAAC-AAACAT----TTT-GAACAAAG-T-------CTGttcaaggattagcccacataccctcaactgtcttcagacactcacaaaaattagaatgaatgttcttatatggtatacatgtacaatgaaagga
gi|3 : TT----T----T--C----A-----A---TTATATGT-TCAATCC--ATCATAC----ACATTAC-ACG---AAGAAAGAAA------CAA--AAATG-------G-TAAC-AAACATA--AA------------G-------CTTTTTACTTCGA-AGCACAGCCCATATACC-CCAACTGTCTTCAGACAACCGCTTTG-C-AAAAACTATGACGAATATTCTTATACGAAATGC-T----T----A---GC-C-AGG--TGGTCGAT----------GTATTACGTG-ACAAA-ATAAGCCCAACAACA--GAA---ATATT---GAGCCAACCATTCCTG-AATAAG-ACC-------CTTTCAAATCGCCCATT--TAGGTG-CTAAAA-TGT-----T--T---AGTCG---TAAATAAAGTGAC-ACACATTTTAA-CGGATT-----AT--TGCAAGACTAAACCGGCTCAACACAACTGTAG---TC-TGG-T-A-TGACAACG----T---CA---TGTTTCAAGGAAAGTCAACAACAAA-TGAACTC-T-TT-CATGCTCACTTTCTTATT-TTAATATCATCT-AAAACAGCTCATAA--AA
gi|11 : caggcaggagaaacggactttggttggtcctccttcccaatcagattatatttcaaaacttatttttcttgtttttttcttttttttttttttcaaattcacatataCC--ATCGTAT----ATAACAA-ACA---CACAAA--AAG-----TGG--GGAAAA----ACG-TGAC-AAACATA--AGTT-GAGTAAAA-G-------TCGTTTAC---AA-GACTCAGCCC---------TAACTGTCTTCAGACACCCGCTGTG-CAAAAAACTATTAAGAGTATTCTTATACGGCATACAC----ta
gi|23 : atttatgtttaacA---AACAAAGAAAG-------A--AGAAAA----A-G-TGAC-CAACATA--AGTT-GAGTAAAG-A-------TCTTTTACTTCAA-Gagacataagcccaacaacagaaatactaagccagccgttcctgaacaagactctttcaaatcgctaattaagaaactaaacagtttagtcgtaaagt
gi|4 : aattttatttggtcaaatctatgcccaaaattattgaaagtaccaacttatt--AAACAA----A-G-TGAC-AAACATA--AGTC-GAATAAAGTG-------CTTT-TATTTCAA-GGAATAA--------------------TTCATACGCC----GTT-C-AAAAACTATAACGGATATTTTAATACGACATACACA---T----AAATCT-A-GGAAA-----------------GGTATTGCGTA-ACAAA-ATAA------TCACA--AAATTAAAACTATTGAGTCAGCCGTTCCGGAA-TAAG-ACC-------CTTTCACATCGCCAATA--T-CG-G-CTAAAC-AGT-----T--T---AGTCG---TAAATAAAGTGGT-ATA---TTTAA-C-TATTTTGACAT--TTTAAGAATAGAACTGCTCAAAACAACCCTAG---CC-TGG-T-A-T------G----GCAACA---TGTTTCAAGGTAAGTCAACAACACA--GCA-TT-TCTGTCATGCTCACTTA-TGTTTATCAATATCATCT-GAAACAGCTGATGA--G-CTCCACAACTTGTT--TGCTGAAC----A---AT----GTCTGCC-----------ATTTTCC---AGT----CA------A--T---ATGTAGA------GT-ATATACGAAGCGCACTGATTGGT-CCT----TC------------CTTGGG-------G----TGTTTA--------AAG-ACCAATCAGCGCGCTT----CATAC----AT-AA-----T-TC-A-GAAATCAAACAAAAAATGGCAGACTATG--TAACATTTgaa
gi|9 : AACAA----A-G-TTTA-AAACATA--AGTT-GAGTAAAA-C-------CTTTTTACTACTA-GCAACAGTCCACATACCCCCAACTGTTTTCTGATACCCGCTGTG-T-AAAAACTATAACGAATAT
gi|25 : cacagacaggaataacggacattggtcccccaccccttcatattttttttttcagaaatatttttttatatatatatatttttttcaatctgtgttcaatccacaggacgtatcttacttatcttttggatagctatcgatataaagtaaattaactacatatagctatccaaaaggtatagtaagatagggcctgtggttcaatcAAAAACT--A-G-TAAC-AAACATA--AATT-GAGTAAAG-G-------CCTTCTACGTCAA-G
gi|5 : ttttttttctcacggaccctgttttgtcaaatttaatccatgttcagtccattT-GAGTAAAG-G-------CCTTTCACTTCAACGA-ACGGCCCATATACCCCCAACTGTCTTTAGACACCCGCTGTGGC-AAAAACTATTAAAACTATTCTTACACGGCATACAC------------------AGAAAGCTAGAGGAG--------GTATTACGTG-ACAAA-ATAAGCCTAACATTA--GAA---CTATC---GAGCCAGCCGTTCAGG-AATAAG-ACC-------CTTTCAAGTCGCA-ACT--T-C-AG-CGGCTA-AATCGCTTA--A---A--CG---ACAATAAAGTGGC-ATATTATTTTA-CGGGTT-----AA--TACAGGACTAAAACGGCTCGAAACAACTGTAGCCTG--TGATT-A-T------A----A---CA---CATTTTAAGGTAAGTCAACATCAAA-TTAATTC-T-TT-CGTGCTCACTTACTTATT-TCATTATCGCCT-AGAACAGCTGATCATCGGC----CA--TTCCgaaaggc
gi|17 : ggattaatggaccttggttggtctctccctaccacacccacccccacaccccaattatttttttcaatttatatatatattACTTCAA-GGATTAGCCCACATACCCTCAACTGTCTTCAGACACTC-----A-C-AAAAATTAGAATGAATGTTCTTATATGGTATACATG---T----A---C--A-ATGAAagaataacga
gi|19 : gcagttaaaaatgttagtctccccaccccttctgatttttttttcttcaattttttttaatccattgtatataacaataaaaAA-GGAACGGTCCACTTACCACCGACTGTCTTCAGACAT-------------AAACGATAAAGGATATTCATAAACACTATACAC------------------AGAAAGCT--AGCGG------AAGTATTACGTG-ACAAA-ATAAGCACAACagga
gi|13 : CTGTCTTCAGCCACCCGCTGTG-C-AAAAACTATAACGAATATTCCTTTACGTCATACACAGAAC----G---CTGA-AGGAGGT---AATA-----CTTG-----------ATAGA-ATAAG-----CCATATTGAC---ATATT---GAGCCAGCCGTTCCTGCA-TATG-ACCCTAAAGGCTTTCAAATCATCCATTA-A-AGGG-TTATTACAAT-----ATTA---ATTCGGCTTAACACAACTGGT-ATGACgggttattataagactattatgcc
gi|11 : tcta-A-AAAAACTATTAAGAGTATTCTTA-TACGGCATACACAGACATAAGCCCAACAACA--GAA---ATACT---AAGCCAGCCGTTCCTGAA-CAAG-ACT-------CTTTCAAATCGCTAATT--A-AGAA---ACTA-AAC-----A--GTTTAGTCG---TAAaacatgttccaaggaaagtcagcaat
gi|7 : atttatgtttaacccatcgtatataacaaacacacaaaaagtggggaaaaacgtgacaaacataagttgagtaaaagtcgtttacaagactcagccctaactgtcttcagacacccgctgtgcGGTATCACGTG-ACAAA-GTAAGCACAACACCA--GAA---TAATA---GAGCCAAACGTTCAAG-A-AAAATACG-------TTTTCAAATCGTCCATT--A-AGGGACTAAAA-CGT-----T--T---AGTCG-----ACAATAATGGT-A--A-TTTTCA-CGGGTT-----AT--TCCAATGCTACAACGGTTTGAAAGAAATGTAG---CC-TGG-T-A-T------G----A---CAACATGTTTCAAAGTAAGTTAACAACATT-TGAACTC-T-TT-CATGCTCACTTACTTATA-TCAATGTCGCCT-GGAACAGCTGATTA--GAG----CAAATTCCTGATCCGCAAT----ATGTTT----G-CTG-A-----------CTGTTC----ATTGACATGTCTAGCAAAT---CAGTAGA------TT-ATGTATCAAGCCCGCTTATTGGT-agt
gi|14 : taacgactattctaaaacgccagaaggctagacgaG---TAA--AAAGTGGTTGTGAATTTTAAACGGATT-----ATATTACACGATTATAACGACTTAAAACAACTCTTG---TC-TGA-T-A-T------GACA-G---CA---TGTTTCAAGACAAATCAACAATAAA-TGAACTC-T-TT-CATGCTTACTT-C---TT-TCAATATCATC-AAGTACAGCTTATCA--GAG----CAGTTTCCTATTCCACAAaatttcctttggatgttt
gi|6 : cgctgactagacagttaTTAA-AGGGTT-----AT--TACAATATTAATTCGGCTTAACACAACTG------GTATGA-C-A-------------A---CA---TGTTCCAAGGAAAGTCAGCAATAAattatttgctgaacatagtctgccatgt
gi|13 : TTAA-AGGGTT-----AT--TACAATATTAATTCGGCTTAACACAACTG------GTATGA-C-A-------------A---CA---TGTTCCAAGGAAAGTCAGCAAtaagtagattatgtttcaaatgtatcaagcacactgattggtccttcttcgaggcggggcaccaatcaacttcattcgtgcataatacagaatttaaatagaaaataacagactttgttcaacatgttcattatggattaggaaaatggtctcataagctgttttagatgatactgaaataagtgagtcaacatgaaagggttcatctgttgttggcattccttgaaacaaattgtcataacaggttacagctgtgtttttcgacaagaactcattttacatggatggaatagaaaatgtgaaaagtaaacaattatataaacg
gi|12 : tctactgtcttcagccacccgctgtgcaaaaactataacgaatattcctttacgtcatacacagaacgctgaaggaggtaatacttgatagaataagccatattgacatattgagccagccgttcctgcatatgaccctaaaggctttcaaatcatccaT-----AA--TACAGGACTAAAACGGTTCGAAACAACTGTAGCCTG--TGA-TGA-T------A----A---CA---CGTTTTAAGGTAAGTCAACATCAAATTTTT-TC-T-TT-CGTGCTCAC--------T-TCATTATCGCAT-AGAACAGCTGATCA--GAG----CAATTTTCTACTTCGCAAC----t
gi|27 : aACAAGACTAAAACGGCTTAACACAACTATAG---CC-TGG-T-A-T------G----A---CA---TGTTTCAATGTAAGTCAACAACAAA-TGAACTC-T-TT-CATATACATTTttgtttgctgaacgatgtccgccctgttccagccaataaaaagattgatgtatcaagcgtgctgattggtcctaaatacccccccccccccccacacacacacacacacaca
gi|6 : tacttcaaggaagAACACAGCTGTAA---CC-TGT-T-A-T------GACAAT---T----TGTTTCAAGGAATGCCAACAACAGA-TGAA-CCCT-TT-CATGTTGACTCACTTATT-TCAGTATCATCTAAAA-CAGCTTATGA--GAC----CATTTTCCTAATCCATAAT----GAACAT----G-TTGAACAAAGTCTGTTATTTTCT---ATT----TA------AATT---CTGT--A------TT-ATGCACGAATGAAGTTGATTGGTGCCC----CGC-----------CTCG-----AAG-------A------------AGG-ACCAATCAGTGTGCTTGATACATTT----ctt
gi|10 : ttaaagggttattacaatattaattcggcttaacacaactggtatgacaacatgttccaaggaaagtcagcaataataagtagattatgtttcGTCAACAACAAA-TGAACTC-G-TT-CATTCTCACTTACTTATT-TCAATGTCATCTTAAA-CAGATCACAA--AAC----CAATTTTCTAATCCATAAT----TTGCTT----------------------ATTGTCA---AT--------------ATA---CTGC--AATT---TT-ACGTCTCAAGTGCACTGATTGGT-CCT----TC------------CCCGGAG--GAGTG----TATTTT--------AGG-ACCAATCAGCGCACTT----CAT----------------G-CA-T-GAC-----ATAGAAAATGGCAGACTTTGTTCAAAATGTTTGTTACGGATTtttcgacaagaactcattttacatggatggaatagaaaatgtgaaaagtaaacaattatataaacg
gi|24 : ACTTATA-TCATTATCGCCTAGAA-CAGCTGATCA--GAA----CAATTTTCTACTCCGAAAC----aatagtaataaacaagttatattacacataaaaactgttataa
gi|20 : TATCATCTAGAA-CAGCCGATGA--GAG----AAATTTCCATATCCATAACTTGTTAAC---------TGAAT----------GTTTACTGCCATT----T--------ACTAGCCAAT--AAGGAGTTT-ACGTACCAAACGCACCGATTGGT-CCT----TC------------CTTGGGT--A--TG----TATTttgtttgctgaacgatgtccaccatgttccggccaataaaaagattgatgtatcaagcg
gi|10 : AATCCGTAAC----AAACATTTTGA-ACAAA-----------GTCTGCC---ATT--------------TT---CTAT--G------TC-ATGCATGAAGTGCGCTGATTGGT-CCT------------------------A--AAATA----CACTCCTCCGGGGAAGG-ACCAATCAGTGCACTT----
gi|4 : -----------ATTTTTT---GTT----TG------ATTT---CTGA--A------TT-ATGTATGAAGCGCGCTGATTGGT-CTT----TAAACAC-------CCCAAGG--AAG----------------------G-ACCAATCAGTGCGCTT----CGTAT----AT-AC-----TCTA-C-ATATTGAC-TGGAAAATGGCAGACATTGTTCAGCAgagacgtaaaattgcagtatattgacaataagcaaattatggattagaaaattggttttgtgatctgtttaagatgacattgaaataagtaagtgagaatgaacgagttcatttgttgttgacaatagtaataaacaagttatattacacataaaaactgttataa
gi|2 : aaacaaagtgacaaacataagtcgaataaagtgcttttatttcaaggaataattcatacgccgttcaaaaactataacggatattttaatacgacatacacataaatctaggaaaggtattgcgtaacaaaataatcacaaaattaaaactattgagtcagccgttccggaataagaccctttcacatcgccaatatcggctaaacagtttagtcgtaaataaagtggtatatttaactattttgacattttaagaatagaactgctcaaaacaaccctagcctggtatggcaacatgtttcaaggtaagtcaacaacacagcatttctgtcatgctcacttatgtttatcaatatcatctgaaacagctgatgagctccacaacttgtt--A------TT-ATGTATTAAGCGCACTGATTGGT-CCA----TT------------CTCGGGGTGGGGTGGGGGTATTTT--------AGG-ACCAATCAGCGTGCTT----CATGT----AC-AA-----TACA---AAATTCAAATAGAAAATGGGAGACATTGTTCAATTTGATTGTTACGATTTAGGAAAACT-GTCTCATggcagactatgtaacattt
gi|12 : ggcagtagcaatgaaccatagtcagttcccccattctatctgattttttttttaaaatcttaaaatttatgttcaatccatcgtatataacaaagaaacgaacaaaaaatgataataataaagtgacaaacatcagttgagaaaaggcattttacttcaaagcacagcccacataccaccaactgtcttcacacacccgctgtataacgaatgttctgatacggcatacacagacaaccagaggagaaatcacgtgacaaaataagccgaacgacagaaatattgagccaaccgttcatgaataagaccctttcaaatcgccctttaatggagctaaaaagttaagtcgtaaataaagttgcacaaatatttacggattattacaagacagaactgactcaacacaactgtagtctggtactacaacatttttcaaggagagtcaacaacaaatgaactctttcatgctcacttacctatttaaatatcatctaaaacagctc--A------TTGATGTATCAAGCGTGCTGATTGGT-CCT----
gi|6 : ataatacaggactaaaacggttcgaaacaactgtagcctgtgatgataacacgttttaaggtaagtcaacatcaaattttttctttcgtgctcacttcattatcgcatagaacagctgatcagagcaattttctacttcgcaacttgtttgctgaacgatgtccgccctgttccagccaataaaaag-ATGTATCAAGCACACTGATTGGT-CCT----TC------------TTCGAG-----GCG------------------GGGCACCAATCA----ACTT----CATTCGTGCAT-AA-----T--A-CAGAATTTAAATAGAAAATAACAGACTTTGTTCAACATGTTCATTATGGATTA-GGAAAATGGTCTCATAaaatacccccccccccccccacacacacacacacacaca
gi|12 : ttaaagggttattacaatattaattcggcttaacacaactggtatgacaacatgttccaaggaaagtcagcaataataagtagattatgtttcaaGGGG--GGGGG----TATTT---------AGG-ACCAATCAGCACGCTT----GATAC----ATCAATCTTTT-TATT-GGC-TGGAACAG-----GGCGGACATCGTTCAGCAAACAAGTTGCGAAGTA-GAAAATTGagctgttttagatgatactgaaataagtgagtcaacatgaaagggttcatctgttgttggcattccttgaaacaaattgtcataacaggttacagctgtgtttttcgacaagaactcattttacatggatggaatagaaaatgtgaaaagtaaacaattatataaacg
gi|29 : ataatacaggactaaaacggttcgaaacaactgtagcctgtgatgataacacgttttaaggtaagtcaacatcaaattttttctttcgtgctcacttcattatcgcatagaacagctgatcagagCAGACTTTGTTCAAAATGTTTGTTACGGATTccccccacacacacacacacacaca
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|26 ): CAAAGGCAAGATTAACGAACCTTGAGCGTTCTCATCCTCTCTTTTTTTATTTATTTATATTTTTTTATTGTCAAATCTATGTTCAAATCAGTCAAAATGCCCCTTT
Alignments
lowQualScore : 111111111111111111111111111111111
lowQualScore : 5555555555555555555555555555555555555555555555555 11111111111 22222222222222222 11111111111 22222222222222 22222222222 1111 000000000000000000000000000000000 1111111 222 1111 2222222222 111 88888888888888888888888888888888888888888888888888888888888888888888888888888888888 11 111111 666666666666666666666666 444444444 11111
lowQualScore : 1 33 444 4444444444444444444444444444444444444444444444444 0 99 2 444 22222222222 2 9999 5555 66666 1 8 55555555555555555 2 2 33333333333 44 4 555 55 11111111111111 666 4 33333333333 3333 3 3 4444 3 555 999999 1 2 0 1 44 3 0 4 555555555555555555555555555555555 4 4 2 2 66 1 0 6666666 1 9999 000 5 444 22 5 5 5555 0 4 7777 55 0 3 0 0 3 4444 555 6666666666 777 1 0 3 2 1 44 555 4 44 0 1 55555555555555555555555555555555555555555555555555555555555555555555555555555555555 5 1 11 444444 000000000000000000000000 333333333 22 0 44444 1 3 1 6 6
lowQualScore : . .. ... ................................................. . .. . ... ........... . .... .... ..... . . ................. . . ........... .. . ... .. .............. ... . ........... .... . . .... . ... ...... . . . . .. . . . ................................. . . . . .. . . ....... . .... ... . ... .. . . .... . . .... .. . . . . . .... ... .......... ... . . . . . .. ... . .. . . ................................................................................... . . .. ...... ........................ ......... .. . ..... . . . . .
lowQualScore : 0 77 777 5555555555555555555555555555555555555555555555555 6 11 9 777 77777777777 7 3333 7777 22222 0 0 33333333333333333 7 9 66666666666 66 4 666 00 11111111111111 444 0 88888888888 8888 1 1 9999 1 444 666666 0 5 4 8 22 6 6 3 666666666666666666666666666666666 0 0 3 3 11 9 2 2222222 4 9999 999 0 888 00 0 7 3333 9 0 7777 00 1 6 4 4 3 7777 888 1111111111 555 0 7 3 5 0 66 888 5 22 5 0 99999999999999999999999999999999999999999999999999999999999999999999999999999999999 0 0 99 444444 111111111111111111111111 000000000 44 8 99999 2 5 0 7 7
consensus : AGGCAGGAGTAACGGACCTTGGTTGGTC--CCT---CC-----------ACC----------CC------A-----------T---CCGAT-T-TT---TTT-----------TT-T----TC----A-----ATTTT-TT-----------------T-TC-AA-----------TCC--ATCGTATA--NAA--CA-------A-A----CA---AACAA-A-AA---A--GTAAAAAAAA----A-GTGAC-AAACATA-AGTTGAGTA-A---AGGCCTT------TTACTTCAAGGAACGGCCCACATACCCCCAACTGTCTTCAGACACCCGCTGT-GCAAAAA-CTATAACGAATATTCTTATACGGCATACAC--------AGA-AAG---CTAGAGG------G-GTA-TTACGTGACAAA-ATAAGCCCAACANCA--GAAATATTGAGCCAGCCGTTCCTGAATAAGACC-------CTTTCAAATCGCCCATTNA--G-G-G-CTAAANAGTTTAGTC-GTAAATAAAGTGGC-ACA-AATTTTAA-CGGGTT----AT--TACAAGACTAAAAC-GGCTCAACACAACTGTAGCCTG-G--TAT---G---A------CA---TGTTTCAAGGNAAGTCAACAACAAATGAACTCTTTCATGCTCACTTACTTATTTCAATATCGTCT-AGAACAGCTNATNA--G---ANCAA-TTTCCTAATCCGTAAC--G--AAC-NTG-CTGAA-----------ATTTTCT---ATT----TG------AATT---CT-GT----------A------TT-ATGTATCAAGCGCGCTGATTGGT--CCT------TCCTCG---------GGGAAGTGTA-TTT-AGGACCAATCAGCGCGCTTCATACATAATT--GA--T-AAATAGAAAATGGCAGACTTTGTTCAACATATNNGTTACGGANTAGAAAACTGNTCTGATA
Reference ( family-1098 ) : AGGCAGGANTAACGGACCTTGGTTGGTC--CCT---CN-----------ACC----------CC------A-----------T---CTGAT-T-TT---TTT-----------TT-T----TC----A-----ATTNT-TT-----------------T-TC-AA-----------TCC--ATCGTATA--NAA--CA-------A-A----CA---AACAA-A-AA---A--GTAAAAAAAA----A-GTGAC-AAACATA-AGTTGAGTA-A---AGGCCTT------TTACTTCAAGGNACGGCCCACATACCCCCAACTGTCTTCAGACACCCGCTGT-GCAAAAA-CTATAACGAATATTCTTATACGGCATACAC-TA--CCAAGG-AAG---C-AGNAG------G-GTA-TTACGTGACAAA-ATAAGCCCAACAACA--GAAATATTGAGCCAGCCGTTCCTGAATAAGACC-------CTTTCAAATCGCCCATTNN--G-A-G-CTAANAAGTNNAGTC-GTAAATAAAGTGGC-ATA-AATTTTAA-CGGGTT----AT--TACAAGACTAAAAC-GGCTCAACACAACTGTAGNCTG-G--TAT---G---A------CA---TGTTTCAAGGNAAGTCAACAACAAATGAACTCTTTCATGCTCACTTACTTATTTCAATATCGTCT-AAAACAGCTGATNA--G---ANCAA-TTTCCTAATCCGTAAC--G--AAC-ATG-CTGAA-----------ATTTTCT---ATT----TG------AATT---CT-GT----------A------TT-ATGTATNAAGCGCGCTGATTGGT--CCT------TCCTCG---------GGGAAGTGTA-TTT-AGGACCAATCAGCGCGCTTCATACATAATTACGAATTNAAATAGAAAATGGCAGACNTTGTTCAACATGTTCGTTACGGATTAGAAAANTGGTCTCATA
gi|1 : AGGCAGGAGTAACGGACCTTGGTTAGTT--CCT---CA-----------ACC----------CC------A-----------T---CTGAC-TGTT---TTT-----------TT-T----TC----A-----ATTCT-TT-----------------T-TC-GG-----------TCC--ATCGTATA--AAA--CA-------A-A----CA---AACAA-ACAA---A--GCAAAAAAAA----A-GTGAC-AAACATA-AAATGAATA-A---AGGCTGT------ATACTTCAAGACACAGCCCACATACCACCAGCTGTCTTCAGACACCCGCTGT-GCAAAAA-CTATAACGAATATTCTTATACAGCATACAC-TA--CTAAGG-AATTTTC-AATAGTTCCTTG-GTA-TAACGTAATAAA-ATAAGCCTAACCACA--GAAAAACTGAGTCAGCCGTTCCTGA-TAAGACC-------CTTTCAAATCGCCTATTTG--G-A-G-CTAATAAATAAAGTC-GTAACTAAAGTGGT-ACA-ACTTTTAA-CGGATT----AT--TACAAGACTAAACC-GGCCCAACACAACTGTAAGTTG-A--TAT---G---T------TA---TGTTTCAAGGAAAGTCAACAACAAATGAA-TCTTGCATGCTCACTTACTAATTTCAATATCATCTAAAAACAGCTCATGA--G---ACCAA-TTTCCTAATCCATAAC--A--AAC-ATG-ATGAA-----------ATTTTCT---ATT----TG------AATT---CT-GT----------A------TT-ATGTATCAAGGGCACTGACTGGT--CCT------TGCTCG---------GGAAAGTGTATTTT-AGGACCAATCAGCGCACTTCATTTATAATTATGACTTGAAATAGAAAATGGCAGACTTTGTTTAACATCTTTGTTACGGATTAGAACACTGGTGTCATA
gi|10 : GTCAACAACAAATGAACTCGTTCATTCTCACTTACTTATTTCAATGTCATCT-TAAACAGATCACAA--A---ACCAA-TTTTCTAATCCATAAT--T-------TG-CTTA-------------TTGTCA---AT--------------ATA---CT-GC----------AATT---TT-ACGTCTCAAGTGCACTGATTGGT--CCT------TCCCCG---------GAGGAGTGTA-TTTTAGGACCAATCAGCGCACTTCATGCATGAC-----------ATAGAAAATGGCAGACTTTGTTCAAAATGTTTGTTACGGATTgaccatattt
gi|11 : -----ATTTA-TG-----------------T-TT-AA-----------CCC--ATCGTATA--TAA--CA-------A-A----CA---CACAA-A-AA------GTGGGGAAAA----ACGTGAC-AAACATA-AGTTGAGTA-A---AAGTCGT------TTAC---AAGACTCAGCCC---------TAACTGTCTTCAGACACCCGCTGT-GCAAAAAACTATTAAGAGTATTCTT-------ATACG---------------G---C-A-----------------TAC---ACAGACATAAGCCCAACAACA--GAAATACTAAGCCAGCCGTTCCTGAACAAGACT-------CTTTCAAATCGCTAATTAA--GAA-A-CTAAACAGTTTAGTC-GTAAAaatagtaataaacaagttatattacacataaaaactgttataa
gi|12 : T----AA--TACAGGACTAAAAC-GGTTCGAAACAACTGTAGCCTG-T--GAT---G---ATAA---CA---CGTTTTAAGGTAAGTCAACATCAAATTTTTTCTTTCGTGCTCAC--------TTCATTATCGCAT-AGAACAGCTGATCA--G---AGCAA-TTTTCTACTTCGCAAC--T--TGT-TTG-CTGAACG---------ATGTCCG---CCC----TG--------TT---CCAGCCAATAAAAAGA------TTGATGTATCAAGCGTGCTGATTGGT--CCT------gt
gi|13 : aACTGTCTTCAGCCACCCGCTGT-GCAAAAA-CTATAACGAATATTCCTTTACGTCATACAC--------AGA-ACG---C-TGAAGGA----G-GTA-ATACTTGATAGA-ATAAGCC-----ATATTGACATATTGAGCCAGCCGTTCCTGCATATGACCCTAAAGGCTTTCAAATCATCCATTaaatacccccccccccccccacacacacacacacacaca
gi|13 : tctTTAA-AGGGTT----AT--TACAATATTAATTC-GGCTTAACACAA-------CTG-G--TAT---GACAA------CA---TGTTCCAAGGAAAGTCAGCAAaaagggttattacaatattaattcggcttaacacaactggtatgacaacatgttccaaggaaagtcagcaat
gi|14 : tctactgtcttcagccacccgctgtgcaaaaactataacgaatattcctttacgtcatacacagaacgctgaaggaggtaatacttgatagaataagccatattgacatattgagccagccgttcctgcatatgaccctaaaggctttcaaatcatcca-G-CTGACTAG-ACAGTTAGTAAA--AAGTGGTTGTG-AATTTTAAACGGATT----ATATTACACGATTATAAC-GACTTAAAACAACTCTTGTCTG-A--TAT---G---A------CAGCATGTTTCAAGACAAATCAACAATAAATGAACTCTTTCATG----CTTACTTCTTTCAATATCATCA-AGTACAGCTTATCA--G---AGCAG-TTTCCTATTCCACAAA--T--TAT-TTG-CTGAA-----------t
gi|14 : cATGGCAGACTATGTTCAGCAAATAATTTGTGGAATAGGAAACTGCTCTGATAcatagtctgccatgt
gi|15 : cgctgactagacagttagtaaaaagtggttgtgaattttaaacggattatattacacgattataacgacttaaaacaactcttgtctgatatgacagcatgtttcaagacaaatcaacaataaatgaactctttcatgcttacttctttcaatatcatcaagtacagctAGGCAGGATTAATGAACCTTGGATGGTC--CCT---CT-----------ACCACCCCCTCCCTC------A-----------TACCCCAAT-T-TT---TTTGTCAAATGTTTTT-TGG--TC----A-----AATCTATG-----------------T-TC-AA-----------TCC--ATC---CA--AAA--CACCCATTTA-A----CA---AA--A-A-AA---A--ATAAAAAAAAT---A-G-----AAACAT----TTGAGTA-A---AGGCCTT------TCACTTCAACGAACGGCCCATATGCCCCCAACTGTCTgt
gi|16 : acGCATGAGTAACGGACCTTGGTTAGTT--CCC---CT-----------ATC----------TC------A-----------T---TTGA-----T---TTT-----------TT-T----TC----A-----ATTTT-GT-----------------T-TC--------------TCCAAAT-GTATGTTCAGTTCA-------A-T----CT---ATCAA-A-GATCTA--TTAAACAAAG----A--TGCCAAAACATA---TTAAGTATATTTATGTATTTTATTGTTACTTCAAGGCATAGCTCACATACCCACAACTG
gi|17 : acatGTTAGTC--TCC---CC-----------ACC----------CC------T-----------T---CTGAT-T-TT---TTT-----------TTCT----TC----A-----ATTTT-TT-----------------T-T--AA-----------TCC--ATTGTATA--TAA--CA-------ATA----AA---AAC
gi|17 : gcagttaaaaatACTTCAAGGATTAGCCCACATACCCTCAACTGTCTTCAGACACTC------ACAAAAA-TTAGAATGAATGTTCTTATATGGTATACATGTA--CAATGA-AAG---ttcaaggattagcccacataccctcaactgtcttcagacactcacaaaaattagaatgaatgttcttatatggtatacatgtacaatgaaagga
gi|18 : gcagttaaaaatgttagtctccccaccccttctgatttttttttcttcaattttttttaatccattgtatataacaataaaaAAGCAGGATAAATGGACCTTGGTTGGTC--CCT---CTCTACC------ACC----------CCCCCCCCA-----------TACCCCAAT-T-TC---TTT-----------TT-------C----A-----TTTTT-TTTTTTTGTCAAATCTATGT-TC-AA-----------TCC--ATC---CA--AAA--CA-------C-C----CATTTAACAA-------------AAAAAAAT----A-GTGAG-AAACATA-ga
gi|19 : acAAGGAACGGTCCACTTACCACCGACTGTCTTCAGACAT------------AAA-CGATAAAGGATATTCATAAACACTATACAC--------AGA-AAG---CTAGCGG------AAGTA-TTACGTGACAAA-ATAAGCACAACtatt
gi|19 : AA-CGGGTT----AT--TATAAGACTAgggttattataagactattatgcc
gi|2 : aaggaacggtccacttaccaccgactgtcttcagacataaacgataaaggatattcataaacactatacacagaaagctagcggaagtattacgtgacaaaataagcacGGCAGTAGCAATGAACCATAGTCAGTT--CCC---CC-----------ATT----------CT------A-----------T---CTGAT-T-TT---TTT-----------TT-TAAAATCTTAAA-----ATTTA-TG-----------------T-TC-AA-----------TCC--ATCGTATA--TAA--CA-------A-AGAAACG---AACAA-A-AA---ATGATAATAATAA----A-GTGAC-AAACATC-AGTTGAGAA-A---AGGCATT------TTACTTCAAAGCACAGCCCACATACCACCAACTGTCTTCACACACCCGCTGT-----------ATAACGAATGTTCTGATACGGCATACAC--------AGACAAC---C-AGAGG------A-GAAATCACGTGACAAA-ATAAGCCGAACGACA--GAAATATTGAGCCAACCGTTCATGAATAAGACC-------CTTTCAAATCGCCCTTTAATGG-A-G-CTAAAAAGTTAAGTC-GTAAATAAAGTTGC-ACA-AATATTTA-CGGATT----AT--TACAAGAC-AGAACTGACTCAACACAACTGTAGTCTG-G--TACTACA---A------CA---TTTTTCAAGGAGAGTCAACAACAAATGAACTCTTTCATGCTCACTTACCTATTTAAATATCATCT-AAAACAGCTCATGA--G---A-CAGTTTTCCTAAATCGTAAC--A--ATC-AAA-TTGAACAATGTCTCCCATTTTCT---ATT----TG------AATT---TT-GT----------A------TT-GTACATGAAGCACGCTGATTGGT--CCTAAAATACCCCCACCCCACCCCGAGAA-T---------GGACCAATCAGTGCGCTTAATACATAATttatgcc
gi|20 : TATCATCT-AGAACAGCCGATGA--G---AGAAA-TTTCCATATCCATAACTTGTTAAC------TGAAT----------GTTTACTGCCATT----T--------ACTAGCCA-AT----------AAGGAGTTT-ACGTACCAAACGCACCGATTGGT--CCT------TCCTTG---------GGTA--TGTA-TT
gi|21 : AGCCAGAAATAACGGGCTGTTGTTATTC--TCT---CT-----------ATC----------CC------G-----------T---CTTTT-T-TTCACTTT-----------TT-T----TC----A-----AAATT-TT-----------------A-TC-AA-----------
gi|22 : gaccacAGGCAGGATTAGTTGACCTTGGTTGGTC--CCT---Caattttctttaaaattttttttcaattctatgttcaatccatcct
gi|23 : acA---AACAA-AGAA---A--G--AAGAAAA----A-GTGAC-CAACATA-AGTTGAGTA-A---AGATCTT------TTACTTCAAGGAAcctaccactccaaccgcccagttacaaatttgtggttatatattttattttaaaattaaatatgcgcagatcctctcaatacac
gi|24 : aattttatttggtcaaatctatgcccaaaattattgaaagtaccaacttattACTTATATCATTATCGCCT-AGAACAGCTGATCA--G---AACAA-TTTTCTACTCCGAAAC--T--TGT-TTG-CTGAA-----------
gi|24 : GAACATGGTGGACATCGTTCAGCAAACAAGTTTCGGAGTAGAAAATTGTTCTGATcgatgtccaccatgttccggccaataaaaagattgatgtatcaagcg
gi|25 : acttatatcattatcgcctagaacagctgAAAAACT--A-GTAAC-AAACATA-AATTGAGTA-A---AGGCCTT------CTACGTCAAGGAAAGGCcggccaataaaaagattgatgtatcaagcg
gi|27 : ttttttttctcacggaccctgttttgtcaaatttaatccatgttcagtccattACAAGACTAAAAC-GGCTTAACACAACTATAGCCTG-G--TAT---G---A------CA---TGTTTCAATGTAAGTCAACAACAAATGAACTCTTTCATATACATTT-CTT
gi|28 : tacttcaaggaagGGTTAGTC--CCC---CT-----------ACC----------TC------A-----------T---CTGA--T-TT---TAG-----------TT-T----TC----A-----GTTTT-TTTCTTC------------T-TC-AGATCTGTGTTGTTCC--ATCATATA--TAA--TA-------
gi|29 : ---TTT-----------TT-T----TC----A-----ATTCTATG-----------------T-TC-AA-----------TCC--ATCCTATA--TAA--CA-------A-A----CA---AACAG-A-CA------TTAAAATCC-------GTAAC-AAACAT---TTTGAACA-A---AGttagggtcaaaacat
gi|3 : AGGCAGGAGAAACGGACTTTGGTTGGTCCTCCTTCCCA-----------ATCAGATTATATTTC------AAAACTTATTTTT---CTTGT-T-TT---TTT-----------CT-T----TT----T-----TTTTT-TT-----------------T-TCAAA-----------TTC--A-CATATA--tctg
gi|3 : c-----------TT-T----TC----A-----ATTATATG-----------------T-TC-AA-----------TCC--ATCATACA--CAT--TA-------C-A----CG---AAGAA-A-GA---A----ACAAAAAT----G-GTAAC-AAACATA-AA--------------GCTTT------TTACTTCGAAGCACAGCCCATATACCCC-AACTGTCTTCAGACAACCGCTTT-GCAAAAA-CTATGACGAATATTCTTATACGAAATGC-T-TA--GCCAGG-TGG---T-CGA--------T-GTA-TTACGTGACAAA-ATAAGCCCAACAACA--GAAATATTGAGCCAACCATTCCTGAATAAGACC-------CTTTCAAATCGCCCATTTA--G-GTG-CTAAAATGTTTAGTC-GTAAATAAAGTGAC-ACA-CATTTTAA-CGGATT----AT--TGCAAGACTAAACC-GGCTCAACACAACTGTAGTCTG-G--TAT---G---ACAACGTCA---TGTTTCAAGGAAAGTCAACAACAAATGAACTCTTTCATGCTCACTTTCTTATTTTAATATCATCT-AAAACAGCTCATAA--A---Attttcaattatatgttcaatccatcatacacattacacgaagaaagaaacaaaaatggtaacaaacataaagctttttacttcgaagcacagcccatataccccaactgtcttcagacaaccgctttgcaaaaactatgacgaatattcttatacgaaatgcttagccaggtggtcgatgtattacgtgacaaaataagcccaacaacagaaatattgagccaaccattcctgaataagaccctttcaaatcgcccatttaggtgctaaaatgtttagtcgtaaataaagtgacacacattttaacggattattgcaagactaaaccggctcaacacaactgtagtctggtatgacaacgtcatgtttcaaggaaagtcaacaacaaatgaactctttcatgctcactttcttattttaatatcatctaaaacagctcataaaata
gi|30 : caggcaggagaaacggactttggttggtcctccttcccaatcagattatatttcaaaacttatttttcttgtttttttcttttttttttttttcaaattcacatataAGACAGAAGTAACGGACCTTGGCTAGTA--CCT----T-----------ACC----------CC------A-----------T---CTGA-----C---TTT-----------TT-T----CC----A-----ATTGT-TT-----------------T-TC-AA-----------ta
gi|31 : ccatAGGCAGGCGTAACGGACATTAGTTAGTA--CCG---CT-----------GCC----------CC------G-----------T---CTGAT-T-TT---TTattgt
gi|4 : attcacAAACAA----A-GTGAC-AAACATA-AGTCGAATA-A---AGTGCTT------TTATTTCAAGGAAT---------------AA-----TTCATACGCC----GT-TCAAAAA-CTATAACGGATATTTTAATACGACATACACATAAATCTAGG-AAA----------------G-GTA-TTGCGTAACAAA-ATAATCACAAAATTA--AAACTATTGAGTCAGCCGTTCCGGAATAAGACC-------CTTTCACATCGCCAATATC--G---G-CTAAACAGTTTAGTC-GTAAATAAAGTGGT-ATA----TTTAA-CTATTTTGACAT--TTTAAGAATAGAAC-TGCTCAAAACAACCCTAGCCTG-G--TAT---GGCAA------CA---TGTTTCAAGGTAAGTCAACAACACAGCATTTCTGTCATGCTCACTTATGTTTATCAATATCATCT-GAAACAGCTGATGA--GCTCCACAA-CTTGTT------TGCT--G--AACAATGTCTGCC-----------ATTTTCC---AGT----CA------A--T---AT-GTAG--------A------GT-ATATACGAAGCGCACTGATTGGT--CCT------TCCTTG---------GG---GTGT--TTA-AAGACCAATCAGCGCGCTTCATACATAATTCAGAAATCAAACAAAAAATGGCAGACTATGT--AACATcc
gi|5 : GGATTAATGGACCTTGGTTGGTC--TCT---CCCTACCACACCCACC----------CCCAC---A-----------C---CCCAA-T-TA---TTT-----------TT-T----TC----A-----ATTtt
gi|5 : TTGAGTA-A---AGGCCTT------TCACTTCAACGAACGGCCCATATACCCCCAACTGTCTTTAGACACCCGCTGTGGCAAAAA-CTATTAAAACTATTCTTACACGGCATACAC--------AGA-AAG---CTAGAGGA-----G-GTA-TTACGTGACAAA-ATAAGCCTAACATTA--GAACTATCGAGCCAGCCGTTCAGGAATAAGACC-------CTTTCAAGTCGCAACTTCA--GCG-G-CTAAATCGCTTAAAC-GACAATAAAGTGGC-ATATTATTTT-A-CGGGTT----AA--TACAGGACTAAAAC-GGCTCGAAACAACTGTAGCCTGTGATTAT---A---A------CA---CATTTTAAGGTAAGTCAACATCAAATTAATTCTTTCGTGCTCACTTACTTATTTCATTATCGCCT-AGAACAGCTGATCATCG---GCCA---TTCCAGA---ATAAC--G--Atatatatatatttgagtaaaggcctttcacttcaacgaacggcccatatacccccaactgtctttagacacccgctgtggcaaaaactattaaaactattcttacacggcatacacagaaagctagaggaggtattacgtgacaaaataagcctaacattagaactatcgagccagccgttcaggaataagaccctttcaagtcgcaacttcagcggctaaatcgcttaaacgacaataaagtggcatattattttacgggttaatacaggactaaaacggctcgaaacaactgtagcctgtgattataacacattttaaggtaagtcaacatcaaattaattctttcgtgctcacttacttatttcattatcgcctagaacagctgatcatcggccattccagaataacga
gi|6 : ggattaatggaccttggttggtctctccctaccacacccacccccacaccccaattatttttttcaatttatatatatatTTAA-AGGGTT----AT--TACAATATTAATTC-GGCTTAACACAA-------CTG-G--TAT---GACAA------CA---TGTTCCAAGGAAAGTCAGCAATAA
gi|6 : AACACAGCTGTAACCTG-T--TAT---G---A------CAATTTGTTTCAAGGAATGCCAACAACAGATGAACCCTTTCATGTTGACTCACTTATTTCAGTATCATCT-AAAACAGCTTATGA--G---ACCAT-TTTCCTAATCCATAAT--G--AAC-ATG-TTGAACAAAGTCTGTTATTTTCT---ATT----TA------AATT---CT-GT----------A------TT-ATGCACGAATGAAGTTGATTGGTGCCCC------GCCTCG---------AAGA-----------AGGACCAATCAGTGTGCTTGATACATtaagtagattatgtttcaaatgtatcaagcacactgattggtccttcttcgaggcggggcaccaatcaacttcattcgtgcataatacagaatttaaatagaaaataacagactttgttcaacatgttcattatggattaggaaaatggtctcataagctgttttagatgatactgaaataagtgagtcaacatgaaagggttcatctgttgttggcattccttgaaacaaattgtcataacaggttacagctgtgtttttcgacaagaactcattttacatggatggaatagaaaatgtgaaaagtaaacaattatataaacg
gi|7 : ttaaagggttattacaatattaattcggcttaacacaactggtatgacaacatgttccaaggaaagtcagcaataataagtagattatgtttcaaTAACGACTATTCTAAAACG-------------CCA-GA-AGG---CTAGACGA-----G-GTA-TCACGTGACAAA-GTAAGCACAACACCA--GAATAATAGAGCCAAACGTTCAAGAAAAATACG-------TTTTCAAATCGTCCATTAA--G-G-GACTAAAACGTTTAGTC-GACAATAA--TGGT-A----ATTTTCA-CGGGTT----AT--TCCAATGCTACAAC-GGTTTGAAAGAAATGTAGCCTG-G--TAT---G---A------CAACATGTTTCAAAGTAAGTTAACAACATTTGAACTCTTTCATGCTCACTTACTTATATCAATGTCGCCT-GGAACAGCTGATTA--G---AGCAA-ATTCCTGATCCGCAAT--A--TGT-TTG-CTG-A-----------CTGTTC----ATTGACATGTCTAGCAAAT---CA-GTAG--------A------TT-ATGTATCAAGCCCGCTTATTGGTA-ATT------TCCTtttcgacaagaactcattttacatggatggaatagaaaatgtgaaaagtaaacaattatataaacg
gi|8 : AGGCCGGATTAATGGACCTTGGTTGATC--CCT---CCCTACCACCCTTACC----------CC------A-----------TACCCCAAA-T-TT---TTT-----------TT-G----TC----A-----ATTTT-TT-----------------TGTC-AA-----------ATC--TTTGTTCA--ATC--CA-------T-C----CA---AAAAATA-AA---A--GTAAAATAAATGATA-GTGAG-AAACATATATTTGAGTA-A---AGGCCTT------TCACTTCAACGAACGGCCCATATACCCC-AACTGTCTTTACACACCGGCTGT-GCAAAAA-CTATTAAGATTATTCTTACACGGCATGCAC--------AGA-AAG---CTAGAGGA-----G-GTA-TTACGTGACAAA-ATAAGCCTAACATCA--GAACTATCGAGCCAGCCGTTCttggatgttt
gi|9 : AGACAGGAATAACGGAC----ATTGGTC--CC----CC-----------ACC----------CC------T-----------T---C--ATAT-TT---TTT-----------TT-T----TC----AGAAATATTTT-TT-----------------T-a
gi|9 : cacAACAA----A-GTTTA-AAACATA-AGTTGAGTA-A---AACCTTT------TTACTACTAGCAACAGTCCACATACCCCCAACTGTTTTCTGATACCCGCTGT-GTAAAAA-CTATAACGAATATatatatatatatttttttcaatctgtgttcaatccacaggacgtatcttacttatcttttggatagctatcgatataaagtaaattaactacatatagctatccaaaaggtatagtaagatagggcctgtggttcaatcaacaaagtttaaaacataagttgagtaaaacctttttactactagcaacagtccacatacccccaactgttttctgatacccgctgtgtaaaaactataacgaatat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): CAAAGGCAAGATTAACGAACCTTGAGCGTTCTCATCCTCTCTTTTTTTATTTATTTATATTTTTTTATTGTCAAATCTATGTTCAAATCAGTCAAAATGCCCCTTT
Alignments
lowQualScore : 33333333333333333333333333333 11111111111111111111 111111111 11111111111 22222222222222222 11111111111 22222222222222 22222222222 1111 11111 3333333333333333 1111111 1111111 1111 2222222222 111 11111 88888888888888888888888888888888888888888888888888888888888888888 11 111111 55555555555555555555555 666666666666666666666
lowQualScore : 2 77777777777777777777777777777 99999999999999999999 000000000 2 5555 33333333333 444 5 33333333333333333 2 2 33333333333 44 4 555 55 11111111111111 666 4 33333333333 3333 3 3 4444 3 555 999999 3 1 44 3 2 00000 1 777 1111111111111111 4 2 1 1 0 6666666 1 5 3333333 4 4 11 3 0 5 4444 4 7777 55 0 3 0 0 0 4444 555 6666666666 777 1 1 0 0 3 1 1 44 555 4 44 0 1 88888 8888 3 00000000000000000000000000000000000000000000000000000000000000000 5 11 444444 88888888888888888888888 2 88 555555555555555555555 1 0 22 22 1 1 1
lowQualScore : . ............................. .................... ......... . .... ........... ... . ................. . . ........... .. . ... .. .............. ... . ........... .... . . .... . ... ...... . . .. . . ..... . ... ................ . . . . . ....... . . ....... . . .. . . . .... . .... .. . . . . . .... ... .......... ... . . . . . . . .. ... . .. . . ..... .... . ................................................................. . .. ...... ....................... . .. ..................... . . .. .. . . .
lowQualScore : 1 00000000000000000000000000000 88888888888888888888 000000000 5 3333 00000000000 111 0 88888888888888888 5 7 66666666666 66 4 666 00 11111111111111 444 0 88888888888 8888 1 1 9999 1 444 666666 2 8 22 6 0 00000 6 000 8888888888888888 0 3 0 9 2 2222222 4 0 9999999 4 4 22 6 5 7 9999 0 7777 00 1 6 4 4 2 7777 888 1111111111 555 0 3 3 7 3 0 0 66 888 5 22 5 0 88888 5555 2 00000000000000000000000000000000000000000000000000000000000000000 0 99 444444 88888888888888888888888 5 33 888888888888888888888 4 8 22 00 2 0 0
consensus : AGGCAGGAGTAACGGACCTTGGTTGGTCCCT-----C---C-----------A------CCCC-------AT---CCGAT-T-TTTTT---------TT-T----TC-----A-----A---TTTT-TT-----------------T-TC-AA-----------TCC--ATCGTATA--NAA--CA-------A-A----CA---AACAA-A-AA---A--GTAAAAAAAA----A-GTGAC-AAACATA-AGTTGAGTA-A---AGGCCTT------TTACTTCAAGGAACGGCCCACATACCCCCAACTGTCTTCAGACACCCGCTGTG-C-AAAAACTATAACGAATATTCTTATACGGCATACAC-----AGAAAGCT---AG-A-GGA----G-----GTA-TTACGTGACAAAATAAGCCCAACANCAGAAATATTGAGCCAGCCGTTCCTGAATAAGACC-------CTTTCAAATCGCCCAT-T-NA--G-G-G-CTAAANAGTTTAGTCGTAAATAAAGTGGC-ACAA-ATTTTAA-CGGGTT----AT--TACAAGACTAAAAC-GGCTCAACACAACTGTAGCCTG-G--TAT---G---A------CA---TGTTTCAAGGNAAGTCAACAACAAATGAACTCTTTCATGCTCACTTACTTATTTCAATATCGTCT-AGAACAGCTNATNA--G---ANCAA-TTTCCTAATCCGTAACNAATTTG----CTGAA-----------ATTTTCT---ATT----TG------AATT---CT-GT----------A------TT-ATGTATCAAGCGCGCTGATTGGT--CCT------TCCTCG---------GGGAAGTGTA-TTTAGGACCAATCAGCGCGCTTNATACAT-AAT-----TGAN---AAAT-----AGAAAATGGCAGACTTTGTTCAACATATNNGTTACGGANTAGAAAACTGNTCTGATA
Reference ( family-1098 ) : AGGCAGGAGTAACGGACCTTGGTTGGTCCCT-----C---C-----------A------CCCC-------AT---CCGAT-T-TTTTT---------TT-T----TC-----A-----A---TTTT-TT-----------------T-TC-AA-----------TCC--ATCGTATA--NAA--CA-------A-A----CA---AACAA-A-AA---A--GTAAAAAAAA----A-GTGAC-AAACATA-AGTTGAGTA-A---AGGCCTT------TTACTTCAAGGAACGGCCCACATACCCCCAACTGTCTTCAGACACCCGCTGTG-C-AAAAACTATAACGAATATTCTTATACGGCATACAC-----AGAAAGCT---AG-A-GG-----G-----GTA-TTACGTGACAAAATAAGCCCAACANCAGAAATATTGAGCCAGCCGTTCCTGAATAAGACC-------CTTTCAAATCGCCCAT-T-NA--G-G-G-CTAAANAGTTTAGTCGTAAATAAAGTGGC-ACAA-ATTTTAA-CGGGTT----AT--TACAAGACTAAAAC-GGCTCAACACAACTGTAGCCTG-G--TAT---G---A------CA---TGTTTCAAGGNAAGTCAACAACAAATGAACTCTTTCATGCTCACTTACTTATTTCAATATCGTCT-AGAACAGCTNATNA--G---ANCAA-TTTCCTAATCCGTAACGAACNTG----CTGAA-----------ATTTTCT---ATT----TG------AATT---CT-GT----------A------TT-ATGTATCAAGCGCGCTGATTGGT--CCT------TCCTCG---------GGGAAGTGTA-TTTAGGACCAATCAGCGCGCTTCATACAT-AAT-----TGAT---AAAT-----AGAAAATGGCAGACTTTGTTCAACATATNNGTTACGGANTAGAAAACTGNTCTGATA
gi|1 : AGGCAGGAGTAACGGACCTTGGTTAGTTCCT-----C---A-----------A------CCCC-------AT---CTGAC-TGTTTTT---------TT-T----TC-----A-----A---TTCT-TT-----------------T-TC-GG-----------TCC--ATCGTATA--AAA--CA-------A-A----CA---AACAA-ACAA---A--GCAAAAAAAA----A-GTGAC-AAACATA-AAATGAATA-A---AGGCTGT------ATACTTCAAGACACAGCCCACATACCACCAGCTGTCTTCAGACACCCGCTGTG-C-AAAAACTATAACGAATATTCTTATACAGCATACACTACTAAGGAATTTTCAAT-A-GTTCCTTG-----GTA-TAACGTAATAAAATAAGCCTAACCACAGAAAAACTGAGTCAGCCGTTCCTGA-TAAGACC-------CTTTCAAATCGCCTAT-T-TG--G-A-G-CTAATAAATAAAGTCGTAACTAAAGTGGT-ACAA-CTTTTAA-CGGATT----AT--TACAAGACTAAACC-GGCCCAACACAACTGTAAGTTG-A--TAT---G---T------TA---TGTTTCAAGGAAAGTCAACAACAAATGAA-TCTTGCATGCTCACTTACTAATTTCAATATCATCTAAAAACAGCTCATGA--G---ACCAA-TTTCCTAATCCATAACAAACATG----ATGAA-----------ATTTTCT---ATT----TG------AATT---CT-GT----------A------TT-ATGTATCAAGGGCACTGACTGGT--CCT------TGCTCG---------GGAAAGTGTATTTTAGGACCAATCAGCGCACTTCATTTAT-AATTA---TGACTTGAAAT-----AGAAAATGGCAGACTTTGTTTAACATCTTTGTTACGGATTAGAACACTGGTGTCATA
gi|10 : GTCAACAACAAATGAACTCGTTCATTCTCACTTACTTATTTCAATGTCATCT-TAAACAGATCACAA--A---ACCAA-TTTTCTAATCCAT----AATTTG----CTT-------------ATTGTCA---AT--------------ATA---CT-GC----------AATT---TT-ACGTCTCAAGTGCACTGATTGGT--CCT------TCCCCG---------GAGGAGTGTATTTTAGGACCAATCAGCGCACTTCATGCAT-GAC--------------AT-----AGAAAATGGCAGACTTTGTTCAAAATGTTTGTTACGGATTgaccatattt
gi|11 : -----A---TTTA-TG-----------------T-TT-AA-----------CCC--ATCGTATA--TAA--CA-------A-A----CA---CACAA-A-AA------GTGGGGAAAA----ACGTGAC-AAACATA-AGTTGAGTA-A---AAGTCGT------TTA---CAAG---------ACTCAGCCCTAACTGTCTTCAGACACCCGCTGTG-CAAAAAACTATTAAGAGTATTCTTATACGGCATACAC-----A--------------------------------------GACA---TAAGCCCAACAACAGAAATACTAAGCCAGCCGTTCCTGAACAAGACT-------CTTTCAAATCGCTAAT-T-AA--GAA-A-CTAAACAGTTTAGTCGTAAAaatagtaataaacaagttatattacacataaaaactgttataa
gi|12 : T----AA--TACAGGACTAAAAC-GGTTCGAAACAACTGTAGCCTG-T--GAT---G---ATAA---CA---CGTTTTAAGGTAAGTCAACATCAAATTTTTTCTTTCGTGCTCACTT--------CATTATCGCAT-AGAACAGCTGATCA--G---AGCAA-TTTTCTACTTCGCAACTTGTTTG----CTGAACG---------ATGTCCG---CCC----TG--------TT---CCAGCCAATAAAAAGA------TTGATGTATCAAGCGTGCTGATTGGT--CCT------gt
gi|13 : aACTGTCTTCAGCCACCCGCTGTG-C-AAAAACTATAACGAATATTCCTTTACGTCATACAC-----AGAACGCT---GA-A-GGA----G-----GTA-ATACTTGATAGAATAAGCC--ATATT-GACATATTGAGCCAGCCGTTCCTGCATATGACCCTAAAGGCTTTCAAATCATCCAT-TAAA--G-G-G-TTAaaatacccccccccccccccacacacacacacacacaca
gi|13 : tctTTAA-AGGGTT----AT--TACAATATTAATTC-GGCTTAACACAA-------CTG-G--TAT---GACAA------CA---TGTTCCAAGGAAAGTCAGCAAttacaatattaattcggcttaacacaactggtatgacaacatgttccaaggaaagtcagcaat
gi|14 : tctactgtcttcagccacccgctgtgcaaaaactataacgaatattcctttacgtcatacacagaacgctgaaggaggtaatacttgatagaataagccatattgacatattgagccagccgttcctgcatatgaccctaaaggctttcaaatcatcca-G-A-CTAGACAGTT-AGT----AA-AAAGTGGTTGTGA-ATTTTAAACGGATT----ATATTACACGATTATAAC-GACTTAAAACAACTCTTGTCTG-A--TAT---G---A------CAGCATGTTTCAAGACAAATCAACAATAAATGAACTCTTTCATG----CTTACTTCTTTCAATATCATCA-AGTACAGCTTATCA--G---AGCAG-TTTCCTATTCCACAAATTATTTG----CTGAA-----------t
gi|14 : cgctATGGCAGACTATGTTCAGCAAATAATTTGTGGAATAGGAAACTGCTCTGATAcatagtctgccatgt
gi|15 : cgctgactagacagttagtaaaaagtggttgtgaattttaaacggattatattacacgattataacgacttaaaacaactcttgtctgatatgacagcatgtttcaagacaaatcaacaataaatgaactctttcatgcttacttctttcaatatcatcaagtacagctAGGCAGGATTAATGAACCTTGGATGGTCCCT-----CTACC-----------A------CCCCCTCCCTCATACCCCAAT-T-TTTTTGTCAAATGTTT-T----TTGGTCAA-----A---TCTA-TG-----------------T-TC-AA-----------TCC--ATC---CA--AAA--CACCCATTTA-A----CA---AA--A-A-AA---A--ATAAAAAAAAT---A-G-----AAACAT----TTGAGTA-A---AGGCCTT------TCACTTCAACGAACGGCCCATATGCCCCCAACTGTCTgt
gi|16 : acGCATGAGTAACGGACCTTGGTTAGTTCCC-----C---T-----------A------TCTC-------AT---TTGA-----TTTT---------TT-T----TC-----A-----A---TTTT-GT-----------------T-TC--------------TCCAAAT-GTATGTTCAGTTCA-------A-T----CT---ATCAA-A-GATCTA--TTAAACAAAG----A--TGCCAAAACATA---TTAAGTATATTTATGTATTTTATTGTTACTTCAAGGCATAGCTCACATACCCACAACTG
gi|17 : acatGTTAGTCTCC-----C---C-----------A------CCCC-------TT---CTGAT-T-TTTTT---------TTCT----TC-----A-----A---TTTT-TT-----------------T-T--AA-----------TCC--ATTGTATA--TAA--CA-------ATA----AA---AAC
gi|17 : gcagttaaaaatACTTCAAGGATTAGCCCACATACCCTCAACTGTCTTCAGACACTC-----A-C-AAAAATTAGAATGAATGTTCTTATATGGTATACAttcaaggattagcccacataccctcaactgtcttcagacactcacaaaaattagaatgaatgttcttatatggtatacatgtacaatgaaagga
gi|18 : gcagttaaaaatgttagtctccccaccccttctgatttttttttcttcaattttttttaatccattgtatataacaataaaaAAGCAGGATAAATGGACCTTGGTTGGTCCCTCTCTAC---C-----------ACCCCCCCCCC-------ATACCCCAA----TTTCT---------TT-T----TC-----A-----T---TTTT-TTTTTTTGTCAAATCTATGT-TC-AA-----------TCC--ATC---CA--AAA--CA-------C-C----CATTTAACAA-------------AAAAAAAT----A-GTGAG-AAACATA-tgtacaatgaaagga
gi|19 : acAAGGAACGGTCCACTTACCACCGACTGTCTTCAGACAT-------------AAACGATAAAGGATATTCATAAACACTATACAC-----AGAAAGCT---AG-C-GGA----A-----GTA-TTACGTGACAAAATAAGCACAACtatt
gi|19 : AA-CGGGTT----AT--TATAAGACTAgggttattataagactattatgcc
gi|2 : aaggaacggtccacttaccaccgactgtcttcagacataaacgataaaggatattcataaacactatacacagaaagctagcggaagtattacgtgacaaaataagcacGGCAGTAGCAATGAACCATAGTCAGTTCCC-----C---C-----------A------TTCT-------AT---CTGAT-T-TTTTT---------TT-TAAAATCTTAA-A-----A---TTTA-TG-----------------T-TC-AA-----------TCC--ATCGTATA--TAA--CA-------A-AGAAACG---AACAA-A-AA---ATGATAATAATAA----A-GTGAC-AAACATC-AGTTGAGAA-A---AGGCATT------TTACTTCAAAGCACAGCCCACATACCACCAACTGTCTTCACACACCCGCTGT-----------ATAACGAATGTTCTGATACGGCATACAC-----AGACAACC---AG-A-GG-----A-----GAAATCACGTGACAAAATAAGCCGAACGACAGAAATATTGAGCCAACCGTTCATGAATAAGACC-------CTTTCAAATCGCCCTT-T-AATGG-A-G-CTAAAAAGTTAAGTCGTAAATAAAGTTGC-ACAA-ATATTTA-CGGATT----AT--TACAAGAC-AGAACTGACTCAACACAACTGTAGTCTG-G--TACTACA---A------CA---TTTTTCAAGGAGAGTCAACAACAAATGAACTCTTTCATGCTCACTTACCTATTTAAATATCATCT-AAAACAGCTCATGA--G---A-CAGTTTTCCTAAATCGTAACAATCAAA----TTGAACAATGTCTCCCATTTTCT---ATT----TG------AATT---TT-GT----------A------TT-GTACATGAAGCACGCTGATTGGT--CCTAAAATACCCCCACCCCACCCCGAGAA-T--------GGACCAATCAGTGCGCTTAATACAT-AAT-----ttatgcc
gi|20 : TATCATCT-AGAACAGCCGATGA--G---AGAAA-TTTCCATATCCATAAC----TTGTTAACTGAAT----------GTTTACTGCCATT----T--------ACTAGCCA-AT----------AAGGAGTTT-ACGTACCAAACGCACCGATTGGT--CCT------TCCTTG---------GGTA--TGTA-TT
gi|21 : AGCCAGAAATAACGGGCTGTTGTTATTCTCT-----C---T-----------A------TCCC-------GT---C---------TTT---------TT-T----TC-----------A---CTTT-TT-----------------T-TC-AA-----------
gi|22 : gaccacAGGCAGGATTAGTTGACCTTGGTTGGTCCCTCCCTAC---C-----------A------CTCC-------AA---CCGaattttatcaaaattttctttaaaattttttttcaattctatgttcaatccatcct
gi|23 : acA---AACAA-AGAA---A--G--AAGAAAA----A-GTGAC-CAACATA-AGTTGAGTA-A---AGATCTT------TTACTTCAAGGAAcccagttacaaatttgtggttatatattttattttaaaattaaatatgcgcagatcctctcaatacac
gi|24 : aattttatttggtcaaatctatgcccaaaattattgaaagtaccaacttattACTTATATCATTATCGCCT-AGAACAGCTGATCA--G---AACAA-TTTTCTACTCCGAAACTTGTTTG----CTGAA-----------
gi|24 : CGCTTGATACATCAATCTTTTTATT---GGCC-----GGAACATGGTGGACATCGTTCAGCAAACAAGTTTCGGAGTAGAAAATTGTTCTGATcgatgtccaccatgttccggccaataaaaagattgatgtatcaagcg
gi|25 : acttatatcattatcgcctagaacagctgAAAAACT--A-GTAAC-AAACATA-AATTGAGTA-A---AGGCCTT------CTACGTCAAGGAAAGGC
gi|27 : ttttttttctcacggaccctgttttgtcaaatttaatccatgttcagtccattACAAGACTAAAAC-GGCTTAACACAACTATAGCCTG-G--TAT---G---A------CA---TGTTTCAATGTAAGTCAACAACAAATGAACTCTTTCATATACATTT-CTT
gi|28 : tacttcaaggaagGGTTAGTCCCC-----C---T-----------A------CCTC-------AT---CTGAT-T-TTAGT---------TT-T-----C-----A-----G---TTTT-TTTCTTC------------T-TC-AGATCTGTGTTGTTCC--ATCATATA--TAA--TA-------
gi|29 : TTT---------TT-T----TC-----A-----A---TTCTATG-----------------T-TC-AA-----------TCC--ATCCTATA--TAA--CA-------A-A----CA---AACAG-A-CA------TTAAAATCC-------GTAAC-AAACAT---TTTGAACA-A---AGttagggtcaaaacat
gi|3 : AGGCAGGAGAAACGGACTTTGGTTGGTCCTC-----C---T-----------T------CCCA-------AT---CAGA-----TTAT---------AT-T----TC-----A-----AAACTTAT-TT-----------------T-TC-tctg
gi|3 : cT-T-TTCTT---------TT-T----T----------------TTTT-TT-----------------T-TCAAA-----------TTC--A-CATATA--ttgtttttttcttttttttttttttcaaattcacatatattttcaattatatgttcaatccatcatacacattacacgaagaaagaaacaaaaatggtaacaaacataaagctttttacttcgaagcacagcccatataccccaactgtcttcagacaaccgctttgcaaaaactatgacgaatattcttatacgaaatgcttagccaggtggtcgatgtattacgtgacaaaataagcccaacaacagaaatattgagccaaccattcctgaataagaccctttcaaatcgcccatttaggtgctaaaatgtttagtcgtaaataaagtgacacacattttaacggattattgcaagactaaaccggctcaacacaactgtagtctggtatgacaacgtcatgtttcaaggaaagtcaacaacaaatgaactctttcatgctcactttcttattttaatatcatctaaaacagctcataaaata
gi|3 : caggcaggagaaacggactttggttggtcctccttcccaatcagattatatttcaaaacttatttttcttgttt---------TT-T----TC-----A-----A---TTATATG-----------------T-TC-AA-----------TCC--ATCATACA--CAT--TA-------C-A----CG---AAGAA-A-GA---A----ACAAAAAT----G-GTAAC-AAACATA-AA--------------GCTTT------TTACTTCGAAGCACAGCCCATATACCCC-AACTGTCTTCAGACAACCGCTTTG-C-AAAAACTATGACGAATATTCTTATACGAAATGCTT-----AG----CC---AG-G-TG-----GTCGATGTA-TTACGTGACAAAATAAGCCCAACAACAGAAATATTGAGCCAACCATTCCTGAATAAGACC-------CTTTCAAATCGCCCAT-T-TA--G-GTG-CTAAAATGTTTAGTCGTAAATAAAGTGAC-ACAC-ATTTTAA-CGGATT----AT--TGCAAGACTAAACC-GGCTCAACACAACTGTAGTCTG-G--TAT---G---ACAACGTCA---TGTTTCAAGGAAAGTCAACAACAAATGAACTCTTTCATGCTCACTTTCTTATTTTAATATCATCT-AAAACAGCTCATAA--A---Attttcaattatatgttcaatccatcatacacattacacgaagaaagaaacaaaaatggtaacaaacataaagctttttacttcgaagcacagcccatataccccaactgtcttcagacaaccgctttgcaaaaactatgacgaatattcttatacgaaatgcttagccaggtggtcgatgtattacgtgacaaaataagcccaacaacagaaatattgagccaaccattcctgaataagaccctttcaaatcgcccatttaggtgctaaaatgtttagtcgtaaataaagtgacacacattttaacggattattgcaagactaaaccggctcaacacaactgtagtctggtatgacaacgtcatgtttcaaggaaagtcaacaacaaatgaactctttcatgctcactttcttattttaatatcatctaaaacagctcataaaata
gi|30 : caggcaggagaaacggactttggttggtcctccttcccaatcagattatatttcaaaacttatttttcttgtttttttcttttttttttttttcaaattcacatataAGACAGAAGTAACGGACCTTGGCTAGTACCT---------T-----------A------CCCC-------AT---CTGA-----CTTT---------TT-T----CC-----A-----A---TTGT-TT-----------------T-TC-AA-----------ta
gi|31 : ccatAGGCAGGCGTAACGGACATTAGTTAGTACCG-----C---T-----------G------CCCC-------GT---CTGAT-T-TTTTattgt
gi|4 : attcacAAACAA----A-GTGAC-AAACATA-AGTCGAATA-A---AGTGCTT------TTATTTCAAGGAAT---------------AA-----TTCATACGCC----GTT-C-AAAAACTATAACGGATATTTTAATACGACATACAC-----ATAAATCT---AGGA-AA-----G-----GTA-TTGCGTAACAAAATAATCACAAAATTAAAACTATTGAGTCAGCCGTTCCGGAATAAGACC-------CTTTCACATCGCCAATAT-C-----G-G-CTAAACAGTTTAGTCGTAAATAAAGTGGT-ATA----TTTAA-CTATTTTGACAT--TTTAAGAATAGAAC-TGCTCAAAACAACCCTAGCCTG-G--TAT---GGCAA------CA---TGTTTCAAGGTAAGTCAACAACACAGCATTTCTGTCATGCTCACTTATGTTTATCAATATCATCT-GAAACAGCTGATGA--GCTCCACAA-CTTGTT--TGCTGAAC-AATGT-----CTGCC-----------ATTTTCC---AGT----CA------A--T---AT-GTAG--------A------GT-ATATACGAAGCGCACTGATTGGT--CCT------TCCTTG---------GG---GTGT--TTAAAGACCAATCAGCGCGCTTCATACAT-AAT-----TCAG---AAATCAAACAAAAAATGGCAGACTATGT--AACATcc
gi|5 : GGATTAATGGACCTTGGTTGGTCTCT-----C---CCTACCACACCCA------CCCCCAC----AC---CCCAA-T-TATTT---------TT-T----TC-----A-----A---TTTtt
gi|5 : TTGAGTA-A---AGGCCTT------TCACTTCAACGAACGGCCCATATACCCCCAACTGTCTTTAGACACCCGCTGTGGC-AAAAACTATTAAAACTATTCTTACACGGCATACAC-----AGAAAGCT---AG-A-GGA----G-----GTA-TTACGTGACAAAATAAGCCTAACATTAGAACTATCGAGCCAGCCGTTCAGGAATAAGACC-------CTTTCAAGTCGCAACT-T-CA--GCG-G-CTAAATCGCTTAAACGACAATAAAGTGGC-ATATTATTTTA--CGGGTT----AA--TACAGGACTAAAAC-GGCTCGAAACAACTGTAGCCTGTGATTAT---A---A------CA---CATTTTAAGGTAAGTCAACATCAAATTAATTCTTTCGTGCTCACTTACTTATTTCATTATCGCCT-AGAACAGCTGATCATCG---GCCA---TTCCAGA---ATAACGAatatatatatttgagtaaaggcctttcacttcaacgaacggcccatatacccccaactgtctttagacacccgctgtggcaaaaactattaaaactattcttacacggcatacacagaaagctagaggaggtattacgtgacaaaataagcctaacattagaactatcgagccagccgttcaggaataagaccctttcaagtcgcaacttcagcggctaaatcgcttaaacgacaataaagtggcatattattttacgggttaatacaggactaaaacggctcgaaacaactgtagcctgtgattataacacattttaaggtaagtcaacatcaaattaattctttcgtgctcacttacttatttcattatcgcctagaacagctgatcatcggccattccagaataacga
gi|6 : ggattaatggaccttggttggtctctccctaccacacccacccccacaccccaattatttttttcaatttatatatatatTTAA-AGGGTT----AT--TACAATATTAATTC-GGCTTAACACAA-------CTG-G--TAT---GACAA------CA---TGTTCCAAGGAAAGTCAGCAATAA
gi|6 : AACACAGCTGTAACCTG-T--TAT---G---A------CAATTTGTTTCAAGGAATGCCAACAACAGATGAACCCTTTCATGTTGACTCACTTATTTCAGTATCATCT-AAAACAGCTTATGA--G---ACCAT-TTTCCTAATCCATAATGAACATG----TTGAACAAAGTCTGTTATTTTCT---ATT----TA------AATT---CT-GT----------A------TT-ATGCACGAATGAAGTTGATTGGTGCCCC------GCCTCG---------AAGA----------AGGACCAATCAGTGTGCTTGATACAT---T-----TGAA---ACAT-----Ataagtagattatgtttcaaatgtatcaagcacactgattggtccttcttcgaggcggggcaccaatcaacttcattcgtgcataatacagaatttaaatagaaaataacagactttgttcaacatgttcattatggattaggaaaatggtctcataagctgttttagatgatactgaaataagtgagtcaacatgaaagggttcatctgttgttggcattccttgaaacaaattgtcataacaggttacagctgtgtttttcgacaagaactcattttacatggatggaatagaaaatgtgaaaagtaaacaattatataaacg
gi|7 : ttaaagggttattacaatattaattcggcttaacacaactggtatgacaacatgttccaaggaaagtcagcaataataagtagatTAACGACTATTCTAAAACG-----C-C-----AGAAGGCT---AG-ACGA-----G-----GTA-TCACGTGACAAAGTAAGCACAACACCAGAATAATAGAGCCAAACGTTCAAGAAAAATACG-------TTTTCAAATCGTCCAT-T-AA--G-G-GACTAAAACGTTTAGTCGACAATAA--TGGT-A----ATTTTCA-CGGGTT----AT--TCCAATGCTACAAC-GGTTTGAAAGAAATGTAGCCTG-G--TAT---G---A------CAACATGTTTCAAAGTAAGTTAACAACATTTGAACTCTTTCATGCTCACTTACTTATATCAATGTCGCCT-GGAACAGCTGATTA--G---AGCAA-ATTCCTGATCCGCAATATGTTTG----CTG-A-----------CTGTTC----ATTGACATGTCTAGCAAAT---CA-GTAG--------A------TT-ATGTATCAAGCCCGCTTATTGGTA-ATT------TCCTtttcgacaagaactcattttacatggatggaatagaaaatgtgaaaagtaaacaattatataaacg
gi|8 : AGGCCGGATTAATGGACCTTGGTTGATCCCT-----C---CCTACCACCCTTA------CCCC-------ATACCCCAAA-T-TTTTT---------TT-G----TC-----A-----A---TTTT-TT-----------------TGTC-AA-----------ATC--TTTGTTCA--ATC--CA-------T-C----CA---AAAAATA-AA---A--GTAAAATAAATGATA-GTGAG-AAACATATATTTGAGTA-A---AGGCCTT------TCACTTCAACGAACGGCCCATATACCCC-AACTGTCTTTACACACCGGCTGTG-C-AAAAACTATTAAGATTATTCTTACACGGCATGCAC-----AGAAAGCT---AG-A-GGA----G-----GTA-TTACGTGACAAAATAAGCCTAACATCAGAACTATCGAGCCAGCCGTTCttggatgttt
gi|9 : AGACAGGAATAACGGAC----ATTGGTCCC------C---C-----------A------CCCC-------TT---C--ATAT-TTTTT---------TT-T----TC-----AGAAATA---TTTT-TT-----------------T-a
gi|9 : cacAACAA----A-GTTTA-AAACATA-AGTTGAGTA-A---AACCTTT------TTACTACTAGCAACAGTCCACATACCCCCAACTGTTTTCTGATACCCGCTGTG-T-AAAAACTATAACGAATATatatatatatatttttttcaatctgtgttcaatccacaggacgtatcttacttatcttttggatagctatcgatataaagtaaattaactacatatagctatccaaaaggtatagtaagatagggcctgtggttcaatcaacaaagtttaaaacataagttgagtaaaacctttttactactagcaacagtccacatacccccaactgttttctgatacccgctgtgtaaaaactataacgaatat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): CAAAGGCAAGATTAACGAACCTTGAGCGTTCTCATCCTCTCTTTTTTTATTTATTTATATTTTTTTATTGTCAAATCTATGTTCAAATCAGTCAAAATGCCCCTTT
Alignments
lowQualScore : 33333333333333333333333333333 11111111111111111111 111111111 11111111111 22222222222222222 11111111111 22222222222222 22222222222 1111 11111 1111111 1111111 1111111 1111 11111 2222222222 111 1111111111111111 88888888888888888888888888888888888888888888888888888888888888888 11 111111 55555555555555555555555 555555555555555555555555555555
lowQualScore : 2 77777777777777777777777777777 99999999999999999999 000000000 2 5555 33333333333 444 5 33333333333333333 2 2 33333333333 44 4 555 55 11111111111111 666 4 33333333333 3333 3 3 4444 3 555 999999 3 1 44 3 2 00000 0 3333333 2 1 1 0 6666666 1 5 3333333 4 4 11 3 0 5 4444 0 4 7777 55 0 3 0 0 0 00000 6666666666 777 1 1 0 0 3 1 4 4 4 0 5555555555555555 4 3 00000000000000000000000000000000000000000000000000000000000000000 5 11 444444 88888888888888888888888 1 888888888888888888888888888888 1 0 22 22 1 1 1
lowQualScore : . ............................. .................... ......... . .... ........... ... . ................. . . ........... .. . ... .. .............. ... . ........... .... . . .... . ... ...... . . .. . . ..... . ....... . . . . ....... . . ....... . . .. . . . .... . . .... .. . . . . . ..... .......... ... . . . . . . . . . . ................ . . ................................................................. . .. ...... ....................... . .............................. . . .. .. . . .
lowQualScore : 1 00000000000000000000000000000 88888888888888888888 000000000 5 3333 00000000000 111 0 88888888888888888 5 7 66666666666 66 4 666 00 11111111111111 444 0 88888888888 8888 1 1 9999 1 444 666666 2 8 22 6 0 00000 7 0000000 3 0 9 2 2222222 4 0 9999999 4 4 22 6 5 7 9999 9 0 7777 00 1 6 4 4 2 66666 1111111111 555 0 3 3 7 3 0 2 9 0 8 9999999999999999 0 2 00000000000000000000000000000000000000000000000000000000000000000 0 99 444444 88888888888888888888888 0 000000000000000000000000000000 4 8 22 00 2 0 0
consensus : AGGCAGGAGTAACGGACCTTGGTTGGTCCCT-----C---C-----------A------CCCC-------AT---CCGAT-T-TTTTT---------TT-T----TC-----A-----A---TTTT-TT-----------------T-TC-AA-----------TCC--ATCGTATA--NAA--CA-------A-A----CA---AACAA-A-AA---A--GTAAAAAAAA----A-GTGAC-AAACATA-AGTTGAGTA-A---AGGCCTT------TTACTTCAAGGAACGGCCCACATACCCCCAACTGTCTTCAGACACCCGCTGTG-C-AAAAACTATAACGAATATTCTTATACGGCATACAC-----AGAAAGCTAGAGGAG-------GTATTACGTGACAAAATAAGCCCAACANCAGAAATATTGAGCCAGCCGTTCCTGAATAAGACC-------CTTTCAAATCGCCCAT-T-NA--G-G-G-CTAAANAGTTTAGTCGTAAATAAAGTGGC-ACA-AATTTTAA-CGGGTT----AT--TACAAGACTAAAAC-GGCTCAACACAACTGTAGCCTG-G---TATG---A------CA---TGTTTCAAGGNAAGTCAACAACAAATGAACTCTTTCATGCTCACTTACTTATTTCAATATCGTCT-AGAACAGCTNATNAGAGCAA-TTTCCTAATCCGCAA----CNTGTT------TG-CTGAA-----------ATTTTCT---ATT----TG------AATT---CT-GT----------A------TT-ATGTATCAAGCGCGCTGATTGGT--CCT------TCCTCG---------GGGAAGTGTA-TTTAGGACCAATCAGCGCGCTTNATACAT--A-------AT--TGA---NAAAT-----AGAAAATGGCAGACTTTGTTCAACATATNNGTTACGGANTAGAAAACTGNTCTGATA
Reference ( family-1098 ) : AGGCAGGAGTAACGGACCTTGGTTGGTCCCT-----C---C-----------A------CCCC-------AT---CCGAT-T-TTTTT---------TT-T----TC-----A-----A---TTTT-TT-----------------T-TC-AA-----------TCC--ATCGTATA--NAA--CA-------A-A----CA---AACAA-A-AA---A--GTAAAAAAAA----A-GTGAC-AAACATA-AGTTGAGTA-A---AGGCCTT------TTACTTCAAGGAACGGCCCACATACCCCCAACTGTCTTCAGACACCCGCTGTG-C-AAAAACTATAACGAATATTCTTATACGGCATACAC-----AGAAAGCTAGAGGAG-------GTATTACGTGACAAAATAAGCCCAACANCAGAAATATTGAGCCAGCCGTTCCTGAATAAGACC-------CTTTCAAATCGCCCAT-T-NA--G-G-G-CTAAANAGTTTAGTCGTAAATAAAGTGGC-ACA-AATTTTAA-CGGGTT----AT--TACAAGACTAAAAC-GGCTCAACACAACTGTAGCCTG-G---TATG---A------CA---TGTTTCAAGGNAAGTCAACAACAAATGAACTCTTTCATGCTCACTTACTTATTTCAATATCGTCT-AGAACAGCTNATNAGANCAA-TTTCCTAATCCGTAA----CNAATT------TG-CTGAA-----------ATTTTCT---ATT----TG------AATT---CT-GT----------A------TT-ATGTATCAAGCGCGCTGATTGGT--CCT------TCCTCG---------GGGAAGTGTA-TTTAGGACCAATCAGCGCGCTTNATACAT--A-------AT--TGA---NAAAT-----AGAAAATGGCAGACTTTGTTCAACATATNNGTTACGGANTAGAAAACTGNTCTGATA
gi|1 : AGGCAGGAGTAACGGACCTTGGTTAGTTCCT-----C---A-----------A------CCCC-------AT---CTGAC-TGTTTTT---------TT-T----TC-----A-----A---TTCT-TT-----------------T-TC-GG-----------TCC--ATCGTATA--AAA--CA-------A-A----CA---AACAA-ACAA---A--GCAAAAAAAA----A-GTGAC-AAACATA-AAATGAATA-A---AGGCTGT------ATACTTCAAGACACAGCCCACATACCACCAGCTGTCTTCAGACACCCGCTGTG-C-AAAAACTATAACGAATATTCTTATACAGCATACACTACTAAGGAATTTTCAATAGTTCCTTGGTATAACGTAATAAAATAAGCCTAACCACAGAAAAACTGAGTCAGCCGTTCCTGA-TAAGACC-------CTTTCAAATCGCCTAT-T-TG--G-A-G-CTAATAAATAAAGTCGTAACTAAAGTGGT-ACA-ACTTTTAA-CGGATT----AT--TACAAGACTAAACC-GGCCCAACACAACTGTAAGTTG-A---TATG---T------TA---TGTTTCAAGGAAAGTCAACAACAAATGAA-TCTTGCATGCTCACTTACTAATTTCAATATCATCTAAAAACAGCTCATGAGACCAA-TTTCCTAATCCATAA----CAAACA------TG-ATGAA-----------ATTTTCT---ATT----TG------AATT---CT-GT----------A------TT-ATGTATCAAGGGCACTGACTGGT--CCT------TGCTCG---------GGAAAGTGTATTTTAGGACCAATCAGCGCACTTCATTTAT--A-------ATTATGACTTGAAAT-----AGAAAATGGCAGACTTTGTTTAACATCTTTGTTACGGATTAGAACACTGGTGTCATA
gi|10 : GTCAACAACAAATGAACTCGTTCATTCTCACTTACTTATTTCAATGTCATCT-TAAACAGATCACAAAACCAA-TTTTCTAATCCAT--------AATT------TG-CTT-------------ATTGTCA---AT--------------ATA---CT-GC----------AATT---TT-ACGTCTCAAGTGCACTGATTGGT--CCT------TCCCCG---------GAGGAGTGTATTTTAGGACCAATCAGCGCACTTCATGCA---------------TGA---C--AT-----AGAAAATGGCAGACTTTGTTCAAAATGTTTGTTACGGATTgaccatattt
gi|11 : -----A---TTTA-TG-----------------T-TT-AA-----------CCC--ATCGTATA--TAA--CA-------A-A----CA---CACAA-A-AA------GTGGGGAAAA----ACGTGAC-AAACATA-AGTTGAGTA-A---AAGTCGT------TTA---CAAG---------ACTCAGCCCTAACTGTCTTCAGACACCCGCTGTG-CAAAAAACTATTAAGAGTATTCTTATACGGCATACAC-----A------------------------------GACATAA---GCCCAACAACAGAAATACTAAGCCAGCCGTTCCTGAACAAGACT-------CTTTCAAATCGCTAAT-T-AA--GAA-A-CTAAACAGTTTAGTCGTAAAaatagtaataaacaagttatattacacataaaaactgttataa
gi|12 : T----AA--TACAGGACTAAAAC-GGTTCGAAACAACTGTAGCCTG-T---GATG---ATAA---CA---CGTTTTAAGGTAAGTCAACATCAAATTTTTTCTTTCGTGCTCACTT--------CATTATCGCAT-AGAACAGCTGATCAGAGCAA-TTTTCTACTTCGCAA----CTTGTT------TG-CTGAACG---------ATGTCCG---CCC----TG--------TT---CCAGCCAATAAAAAGA------TTGATGTATCAAGCGTGCTGATTGGT--CCT------gt
gi|13 : aACTGTCTTCAGCCACCCGCTGTG-C-AAAAACTATAACGAATATTCCTTTACGTCATACAC-----AGAACGCTGAAGGAG-------GTAATACTTGATAGAATAAGCC--ATATT-GACATATTGAGCCAGCCGTTCCTGCATATGACCCTAAAGGCTTTCAAATCATCCAT-TAAA--G-G-G-TTAaaatacccccccccccccccacacacacacacacacaca
gi|13 : tctTTAA-AGGGTT----AT--TACAATATTAATTC-GGCTTAACACAA-------CTG-G---TATGACAA------CA---TGTTCCAAGGAAAGTCAGCAAttacaatattaattcggcttaacacaactggtatgacaacatgttccaaggaaagtcagcaat
gi|14 : tctactgtcttcagccacccgctgtgcaaaaactataacgaatattcctttacgtcatacacagaacgctgaaggaggtaatacttgatagaataagccatattgacatattgagccagccgttcctgcatatgaccctaaaggctttcaaatcatcca-G-A-CTAGACAGTT-AGT----AA-AAAGTGGTTGTG-AATTTTAAACGGATT----ATATTACACGATTATAAC-GACTTAAAACAACTCTTGTCTG-A---TATG---A------CAGCATGTTTCAAGACAAATCAACAATAAATGAACTCTTTCATGCT----TACTTCTTTCAATATCATCA-AGTACAGCTTATCAGAGCAG-TTTCCTATTCCACAA----ATTATT------TG-CTGAA-----------t
gi|14 : cgctATGGCAGACTATGTTCAGCAAATAATTTGTGGAATAGGAAACTGCTCTGATAcatagtctgccatgt
gi|15 : cgctgactagacagttagtaaaaagtggttgtgaattttaaacggattatattacacgattataacgacttaaaacaactcttgtctgatatgacagcatgtttcaagacaaatcaacaataaatgaactctttcatgcttacttctttcaatatcatcaagtacagctAGGCAGGATTAATGAACCTTGGATGGTCCCT-----CTACC-----------A------CCCCCTCCCTCATACCCCAAT-T-TTTTTGTCAAATGTTT-T----TTGGTCAA-----A---TCTA-TG-----------------T-TC-AA-----------TCC--ATC---CA--AAA--CACCCATTTA-A----CA---AA--A-A-AA---A--ATAAAAAAAAT---A-G-----AAACAT----TTGAGTA-A---AGGCCTT------TCACTTCAACGAACGGCCCATATGCCCCCAACTGTCTgt
gi|16 : acGCATGAGTAACGGACCTTGGTTAGTTCCC-----C---T-----------A------TCTC-------AT---TTGA-----TTTT---------TT-T----TC-----A-----A---TTTT-GT-----------------T-TC--------------TCCAAAT-GTATGTTCAGTTCA-------A-T----CT---ATCAA-A-GATCTA--TTAAACAAAG----A--TGCCAAAACATA---TTAAGTATATTTATGTATTTTATTGTTACTTCAAGGCATAGCTCACATACCCACAACTG
gi|17 : acatGTTAGTCTCC-----C---C-----------A------CCCC-------TT---CTGAT-T-TTTTT---------TTCT----TC-----A-----A---TTTT-TT-----------------T-T--AA-----------TCC--ATTGTATA--TAA--CA-------ATA----AA---AAC
gi|17 : gcagttaaaaatACTTCAAGGATTAGCCCACATACCCTCAACTGTCTTCAGACACTC-----A-C-AAAAATTAGAATGAATGTTCTTATATGGTATACAttcaaggattagcccacataccctcaactgtcttcagacactcacaaaaattagaatgaatgttcttatatggtatacatgtacaatgaaagga
gi|18 : gcagttaaaaatgttagtctccccaccccttctgatttttttttcttcaattttttttaatccattgtatataacaataaaaAAGCAGGATAAATGGACCTTGGTTGGTCCCTCTCTAC---C-----------ACCCCCCCCCC-------ATACCCCAA----TTTCT---------TT-T----TC-----A-----T---TTTT-TTTTTTTGTCAAATCTATGT-TC-AA-----------TCC--ATC---CA--AAA--CA-------C-C----CATTTAACAA-------------AAAAAAAT----A-GTGAG-AAACATA-tgtacaatgaaagga
gi|19 : acAAGGAACGGTCCACTTACCACCGACTGTCTTCAGACAT-------------AAACGATAAAGGATATTCATAAACACTATACAC-----AGAAAGCTAGCGGAA-------GTATTACGTGACAAAATAAGCACAACtatt
gi|19 : AA-CGGGTT----AT--TATAAGACTAgggttattataagactattatgcc
gi|2 : aaggaacggtccacttaccaccgactgtcttcagacataaacgataaaggatattcataaacactatacacagaaagctagcggaagtattacgtgacaaaataagcacGGCAGTAGCAATGAACCATAGTCAGTTCCC-----C---C-----------A------TTCT-------AT---CTGAT-T-TTTTT---------TT-TAAAATCTTAA-A-----A---TTTA-TG-----------------T-TC-AA-----------TCC--ATCGTATA--TAA--CA-------A-AGAAACG---AACAA-A-AA---ATGATAATAATAA----A-GTGAC-AAACATC-AGTTGAGAA-A---AGGCATT------TTACTTCAAAGCACAGCCCACATACCACCAACTGTCTTCACACACCCGCTGT-----------ATAACGAATGTTCTGATACGGCATACAC-----AGACAACCAGAGGAG-------AAATCACGTGACAAAATAAGCCGAACGACAGAAATATTGAGCCAACCGTTCATGAATAAGACC-------CTTTCAAATCGCCCTT-T-AATGG-A-G-CTAAAAAGTTAAGTCGTAAATAAAGTTGC-ACA-AATATTTA-CGGATT----AT--TACAAGAC-AGAACTGACTCAACACAACTGTAGTCTG-GTACTACA---A------CA---TTTTTCAAGGAGAGTCAACAACAAATGAACTCTTTCATGCTCACTTACCTATTTAAATATCATCT-AAAACAGCTCATGAGA-CAGTTTTCCTAAATCGTAACAATCAAATTGAACAATGTCTCCC-----------ATTTTCT---ATT----TG------AATT---TT-GT----------A------TT-GTACATGAAGCACGCTGATTGGT--CCTAAAATACCCCCACCCCACCCCGAGAA-T--------GGACCAATCAGTGCGCTTAATACAT--A-------AT--ttatgcc
gi|20 : TATCATCT-AGAACAGCCGATGAGAGAAA-TTTCCATATCCATAA----CTTGTT------AA-CTGAAT----------GTTTACTGCCATT----T--------ACTAGCCA-AT----------AAGGAGTTT-ACGTACCAAACGCACCGATTGGT--CCT------TCCTTG---------GGTA--TGTA-TT
gi|21 : AGCCAGAAATAACGGGCTGTTGTTATTCTCT-----C---T-----------A------TCCC-------GT---C---------TTT---------TT-T----TC-----------A---CTTT-TT-----------------T-TC-AA-----------
gi|22 : gaccacAGGCAGGATTAGTTGACCTTGGTTGGTCCCTCCCTAC---C-----------A------CTCC-------AA---CCGaattttatcaaaattttctttaaaattttttttcaattctatgttcaatccatcct
gi|23 : acA---AACAA-AGAA---A--G--AAGAAAA----A-GTGAC-CAACATA-AGTTGAGTA-A---AGATCTT------TTACTTCAAGGAAcccagttacaaatttgtggttatatattttattttaaaattaaatatgcgcagatcctctcaatacac
gi|24 : aattttatttggtcaaatctatgcccaaaattattgaaagtaccaacttattACTTATATCATTATCGCCT-AGAACAGCTGATCAGAACAA-TTTTCTACTCCGAAA----CTTGTT------TG-CTGAA-----------
gi|24 : CGCTTGATACATCAATCTTTTTAT--TGG---C---C-----GGAACATGGTGGACATCGTTCAGCAAACAAGTTTCGGAGTAGAAAATTGTTCTGATcgatgtccaccatgttccggccaataaaaagattgatgtatcaagcg
gi|25 : acttatatcattatcgcctagaacagctgAAAAACT--A-GTAAC-AAACATA-AATTGAGTA-A---AGGCCTT------CTACGTCAAGGAAAGGC
gi|27 : ttttttttctcacggaccctgttttgtcaaatttaatccatgttcagtccattACAAGACTAAAAC-GGCTTAACACAACTATAGCCTG-G---TATG---A------CA---TGTTTCAATGTAAGTCAACAACAAATGAACTCTTTCATATACATTT-CTT
gi|28 : tacttcaaggaagGGTTAGTCCCC-----C---T-----------A------CCTC-------AT---CTGAT-T-TTAGT---------TT-T-----C-----A-----G---TTTT-TTTCTTC------------T-TC-AGATCTGTGTTGTTCC--ATCATATA--TAA--TA-------
gi|29 : TTT---------TT-T----TC-----A-----A---TTCTATG-----------------T-TC-AA-----------TCC--ATCCTATA--TAA--CA-------A-A----CA---AACAG-A-CA------TTAAAATCC-------GTAAC-AAACAT---TTTGAACA-A---AGttagggtcaaaacat
gi|3 : AGGCAGGAGAAACGGACTTTGGTTGGTCCTC-----C---T-----------T------CCCA-------AT---CAGA-----TTAT---------AT-T----TC-----A-----AAACTTAT-TT-----------------T-TC-tctg
gi|3 : cT-T-TTCTT---------TT-T----T----------------TTTT-TT-----------------T-TCAAA-----------TTC--A-CATATA--ttgtttttttcttttttttttttttcaaattcacatatattttcaattatatgttcaatccatcatacacattacacgaagaaagaaacaaaaatggtaacaaacataaagctttttacttcgaagcacagcccatataccccaactgtcttcagacaaccgctttgcaaaaactatgacgaatattcttatacgaaatgcttagccaggtggtcgatgtattacgtgacaaaataagcccaacaacagaaatattgagccaaccattcctgaataagaccctttcaaatcgcccatttaggtgctaaaatgtttagtcgtaaataaagtgacacacattttaacggattattgcaagactaaaccggctcaacacaactgtagtctggtatgacaacgtcatgtttcaaggaaagtcaacaacaaatgaactctttcatgctcactttcttattttaatatcatctaaaacagctcataaaata
gi|3 : caggcaggagaaacggactttggttggtcctccttcccaatcagattatatttcaaaacttatttttcttgttt---------TT-T----TC-----A-----A---TTATATG-----------------T-TC-AA-----------TCC--ATCATACA--CAT--TA-------C-A----CG---AAGAA-A-GA---A----ACAAAAAT----G-GTAAC-AAACATA-AA--------------GCTTT------TTACTTCGAAGCACAGCCCATATACCCC-AACTGTCTTCAGACAACCGCTTTG-C-AAAAACTATGACGAATATTCTTATACGAAATGCTT-----AGCCAGGTGGTCGAT-------GTATTACGTGACAAAATAAGCCCAACAACAGAAATATTGAGCCAACCATTCCTGAATAAGACC-------CTTTCAAATCGCCCAT-T-TA--G-GTG-CTAAAATGTTTAGTCGTAAATAAAGTGAC-ACA-CATTTTAA-CGGATT----AT--TGCAAGACTAAACC-GGCTCAACACAACTGTAGTCTG-G---TATG---ACAACGTCA---TGTTTCAAGGAAAGTCAACAACAAATGAACTCTTTCATGCTCACTTTCTTATTTTAATATCATCT-AAAACAGCTCATAAAAttttcaattatatgttcaatccatcatacacattacacgaagaaagaaacaaaaatggtaacaaacataaagctttttacttcgaagcacagcccatataccccaactgtcttcagacaaccgctttgcaaaaactatgacgaatattcttatacgaaatgcttagccaggtggtcgatgtattacgtgacaaaataagcccaacaacagaaatattgagccaaccattcctgaataagaccctttcaaatcgcccatttaggtgctaaaatgtttagtcgtaaataaagtgacacacattttaacggattattgcaagactaaaccggctcaacacaactgtagtctggtatgacaacgtcatgtttcaaggaaagtcaacaacaaatgaactctttcatgctcactttcttattttaatatcatctaaaacagctcataaaata
gi|30 : caggcaggagaaacggactttggttggtcctccttcccaatcagattatatttcaaaacttatttttcttgtttttttcttttttttttttttcaaattcacatataAGACAGAAGTAACGGACCTTGGCTAGTACCT---------T-----------A------CCCC-------AT---CTGA-----CTTT---------TT-T----CC-----A-----A---TTGT-TT-----------------T-TC-AA-----------ta
gi|31 : ccatAGGCAGGCGTAACGGACATTAGTTAGTACCG-----C---T-----------G------CCCC-------GT---CTGAT-T-TTTTattgt
gi|4 : attcacAAACAA----A-GTGAC-AAACATA-AGTCGAATA-A---AGTGCTT------TTATTTCAAGGAAT---------------AA-----TTCATACGCC----GTT-C-AAAAACTATAACGGATATTTTAATACGACATACAC-----ATAAATCTAGGAAAG-------GTATTGCGTAACAAAATAATCACAAAATTAAAACTATTGAGTCAGCCGTTCCGGAATAAGACC-------CTTTCACATCGCCAATAT-C-----G-G-CTAAACAGTTTAGTCGTAAATAAAGTGGT-ATA----TTTAA-CTATTTTGACAT--TTTAAGAATAGAAC-TGCTCAAAACAACCCTAGCCTG-G---TATGGCAA------CA---TGTTTCAAGGTAAGTCAACAACACAGCATTTCTGTCATGCTCACTTATGTTTATCAATATCATCT-GAAACAGCTGAT--GAGC-----------TCCACAA----CTTGTT------TG-CTGAACAATGTCTGCCATTTTCC---AGT----CA------A--T---AT-GTAG--------A------GT-ATATACGAAGCGCACTGATTGGT--CCT------TCCTTG---------GG---GTGT--TTAAAGACCAATCAGCGCGCTTCATACAT--A-------AT--TCA---GAAATCAAACAAAAAATGGCAGACTATGT--AACATcc
gi|5 : GGATTAATGGACCTTGGTTGGTCTCT-----C---CCTACCACACCCA------CCCCCAC----AC---CCCAA-T-TATTT---------TT-T----TC-----A-----A---TTTtt
gi|5 : TTGAGTA-A---AGGCCTT------TCACTTCAACGAACGGCCCATATACCCCCAACTGTCTTTAGACACCCGCTGTGGC-AAAAACTATTAAAACTATTCTTACACGGCATACAC-----AGAAAGCTAGAGGAG-------GTATTACGTGACAAAATAAGCCTAACATTAGAACTATCGAGCCAGCCGTTCAGGAATAAGACC-------CTTTCAAGTCGCAACT-T-CA--GCG-G-CTAAATCGCTTAAACGACAATAAAGTGGC-ATATTATTTT-A-CGGGTT----AA--TACAGGACTAAAAC-GGCTCGAAACAACTGTAGCCTGTGAT-TATA---A------CA---CATTTTAAGGTAAGTCAACATCAAATTAATTCTTTCGTGCTCACTTACTTATTTCATTATCGCCT-AGAACAGCTGATCAatatatatatttgagtaaaggcctttcacttcaacgaacggcccatatacccccaactgtctttagacacccgctgtggcaaaaactattaaaactattcttacacggcatacacagaaagctagaggaggtattacgtgacaaaataagcctaacattagaactatcgagccagccgttcaggaataagaccctttcaagtcgcaacttcagcggctaaatcgcttaaacgacaataaagtggcatattattttacgggttaatacaggactaaaacggctcgaaacaactgtagcctgtgattataacacattttaaggtaagtcaacatcaaattaattctttcgtgctcacttacttatttcattatcgcctagaacagctgatcatcggccattccagaataacga
gi|6 : ggattaatggaccttggttggtctctccctaccacacccacccccacaccccaattatttttttcaatttatatatatatTTAA-AGGGTT----AT--TACAATATTAATTC-GGCTTAACACAA-------CTG-G---TATGACAA------CA---TGTTCCAAGGAAAGTCAGCAATAAtcggccattccagaataacga
gi|6 : AACACAGCTGTAACCTG-T---TATG---A------CAATTTGTTTCAAGGAATGCCAACAACAGATGAACCCTTTCATGTTGACTCACTTATTTCAGTATCATCT-AAAACAGCTTATGAGACCAT-TTTCCTAATCCATAA----TGAACA------TG-TTGAACAAAGTCTGTTATTTTCT---ATT----TA------AATT---CT-GT----------A------TT-ATGCACGAATGAAGTTGATTGGTGCCCC------GCCTCG---------AAGA----------AGGACCAATCAGTGTGCTTGATACAT-----------T--TGA---AACAT-----Ataagtagattatgtttcaaatgtatcaagcacactgattggtccttcttcgaggcggggcaccaatcaacttcattcgtgcataatacagaatttaaatagaaaataacagactttgttcaacatgttcattatggattaggaaaatggtctcataagctgttttagatgatactgaaataagtgagtcaacatgaaagggttcatctgttgttggcattccttgaaacaaattgtcataacaggttacagctgtgtttttcgacaagaactcattttacatggatggaatagaaaatgtgaaaagtaaacaattatataaacg
gi|7 : ttaaagggttattacaatattaattcggcttaacacaactggtatgacaacatgttccaaggaaagtcagcaataataagtagatTAACGACTATTCTAAAACG-----C-C-----AGAAGGCTAGACGAG-------GTATCACGTGACAAAGTAAGCACAACACCAGAATAATAGAGCCAAACGTTCAAGAAAAATACG-------TTTTCAAATCGTCCAT-T-AA--G-G-GACTAAAACGTTTAGTCGACAATAA--TGGT-A----ATTTTCA-CGGGTT----AT--TCCAATGCTACAAC-GGTTTGAAAGAAATGTAGCCTG-G---TATG---A------CAACATGTTTCAAAGTAAGTTAACAACATTTGAACTCTTTCATGCTCACTTACTTATATCAATGTCGCCT-GGAACAGCTGATTAGAGCAA-ATTCCTGATCCGCAA----TATGTT------TG-CTG-A-----------CTGTTC----ATTGACATGTCTAGCAAAT---CA-GTAG--------A------TT-ATGTATCAAGCCCGCTTATTGGTA-ATT------TCCTtttcgacaagaactcattttacatggatggaatagaaaatgtgaaaagtaaacaattatataaacg
gi|8 : AGGCCGGATTAATGGACCTTGGTTGATCCCT-----C---CCTACCACCCTTA------CCCC-------ATACCCCAAA-T-TTTTT---------TT-G----TC-----A-----A---TTTT-TT-----------------TGTC-AA-----------ATC--TTTGTTCA--ATC--CA-------T-C----CA---AAAAATA-AA---A--GTAAAATAAATGATA-GTGAG-AAACATATATTTGAGTA-A---AGGCCTT------TCACTTCAACGAACGGCCCATATACCCC-AACTGTCTTTACACACCGGCTGTG-C-AAAAACTATTAAGATTATTCTTACACGGCATGCAC-----AGAAAGCTAGAGGAG-------GTATTACGTGACAAAATAAGCCTAACATCAGAACTATCGAGCCAGCCGTTCttggatgttt
gi|9 : AGACAGGAATAACGGAC----ATTGGTCCC------C---C-----------A------CCCC-------TT---C--ATAT-TTTTT---------TT-T----TC-----AGAAATA---TTTT-TT-----------------T-a
gi|9 : cacAACAA----A-GTTTA-AAACATA-AGTTGAGTA-A---AACCTTT------TTACTACTAGCAACAGTCCACATACCCCCAACTGTTTTCTGATACCCGCTGTG-T-AAAAACTATAACGAATATatatatatatatttttttcaatctgtgttcaatccacaggacgtatcttacttatcttttggatagctatcgatataaagtaaattaactacatatagctatccaaaaggtatagtaagatagggcctgtggttcaatcaacaaagtttaaaacataagttgagtaaaacctttttactactagcaacagtccacatacccccaactgttttctgatacccgctgtgtaaaaactataacgaatat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): CAAAGGCAAGATTAACGAACCTTGAGCGTTCTCATCCTCTCTTTTTTTATTTATTTATATTTTTTTATTGTCAAATCTATGTTCAAATCAGTCAAAATGCCCCTTT
Alignments
lowQualScore : 33333333333333333333333333333 11111111111111111111 111111111 11111111111 22222222222222222 11111111111 22222222222222 22222222222 1111 11111 1111111 1111111 1111111 1111 11111 2222222222 111 222222222222222 333333333333333333333333 666666666666666666666666666666666666666666666666 11 111111 55555555555555555555555 555555555555555555555555555555
lowQualScore : 2 77777777777777777777777777777 99999999999999999999 000000000 2 5555 33333333333 444 5 33333333333333333 2 2 33333333333 44 4 555 55 11111111111111 666 4 33333333333 3333 3 3 4444 3 555 999999 3 1 44 3 2 00000 0 3333333 2 1 1 0 6666666 1 5 3333333 4 4 11 3 0 5 4444 0 4 7777 55 0 3 0 0 0 00000 6666666666 777 1 1 0 0 3 1 4 4 4 0 99999 444444444444444 222222222222222222222222 888888888888888888888888888888888888888888888888 5 11 444444 88888888888888888888888 1 888888888888888888888888888888 1 0 22 22 1 1 1
lowQualScore : . ............................. .................... ......... . .... ........... ... . ................. . . ........... .. . ... .. .............. ... . ........... .... . . .... . ... ...... . . .. . . ..... . ....... . . . . ....... . . ....... . . .. . . . .... . . .... .. . . . . . ..... .......... ... . . . . . . . . . . ..... ............... ........................ ................................................ . .. ...... ....................... . .............................. . . .. .. . . .
lowQualScore : 1 00000000000000000000000000000 88888888888888888888 000000000 5 3333 00000000000 111 0 88888888888888888 5 7 66666666666 66 4 666 00 11111111111111 444 0 88888888888 8888 1 1 9999 1 444 666666 2 8 22 6 0 00000 7 0000000 3 0 9 2 2222222 4 0 9999999 4 4 22 6 5 7 9999 9 0 7777 00 1 6 4 4 2 66666 1111111111 555 0 3 3 7 3 0 2 1 0 8 00000 555555555555555 111111111111111111111111 555555555555555555555555555555555555555555555555 0 99 444444 88888888888888888888888 0 000000000000000000000000000000 4 8 22 00 2 0 0
consensus : AGGCAGGAGTAACGGACCTTGGTTGGTCCCT-----C---C-----------A------CCCC-------AT---CCGAT-T-TTTTT---------TT-T----TC-----A-----A---TTTT-TT-----------------T-TC-AA-----------TCC--ATCGTATA--NAA--CA-------A-A----CA---AACAA-A-AA---A--GTAAAAAAAA----A-GTGAC-AAACATA-AGTTGAGTA-A---AGGCCTT------TTACTTCAAGGAACGGCCCACATACCCCCAACTGTCTTCAGACACCCGCTGTG-C-AAAAACTATAACGAATATTCTTATACGGCATACAC-----AGAAAGCTAGAGGAG-------GTATTACGTGACAAAATAAGCCCAACANCAGAAATATTGAGCCAGCCGTTCCTGAATAAGACC-------CTTTCAAATCGCCCAT-T-NA--G-G-G-CTAAANAGTTTAGTCGTAAATAAAGTGGC-ACA-AATTTTAA-CGGGTT----AT--TACAAGACTAAAAC-GGCTCAACACAACTGTAGCCTG-G---TATG---A------CA---TGTTTCAAGGNAAGTCAACAACAAATGAACTCTTTCATGCTCACTTACTTATTTCAATATCGTCT-AGAACAGCTNATNAGAGCAA-TTTCCTAATCCGC----AAC--------------TTGTTTG--------CTGAA-----------ATTTTCT---ATT----TG------AATT---CT-GT----------A------TT-ATGTATCAAGCGCGCTGATTGGT--CCT------TCCTCG---------GGGAAGTGTA-TTTAGGACCAATCAGCGCGCTTNATACAT--A-------AT--TGA---NAAAT-----AGAAAATGGCAGACTTTGTTCAACATATNNGTTACGGANTAGAAAACTGNTCTGATA
Reference ( family-1098 ) : AGGCAGGAGTAACGGACCTTGGTTGGTCCCT-----C---C-----------A------CCCC-------AT---CCGAT-T-TTTTT---------TT-T----TC-----A-----A---TTTT-TT-----------------T-TC-AA-----------TCC--ATCGTATA--NAA--CA-------A-A----CA---AACAA-A-AA---A--GTAAAAAAAA----A-GTGAC-AAACATA-AGTTGAGTA-A---AGGCCTT------TTACTTCAAGGAACGGCCCACATACCCCCAACTGTCTTCAGACACCCGCTGTG-C-AAAAACTATAACGAATATTCTTATACGGCATACAC-----AGAAAGCTAGAGGAG-------GTATTACGTGACAAAATAAGCCCAACANCAGAAATATTGAGCCAGCCGTTCCTGAATAAGACC-------CTTTCAAATCGCCCAT-T-NA--G-G-G-CTAAANAGTTTAGTCGTAAATAAAGTGGC-ACA-AATTTTAA-CGGGTT----AT--TACAAGACTAAAAC-GGCTCAACACAACTGTAGCCTG-G---TATG---A------CA---TGTTTCAAGGNAAGTCAACAACAAATGAACTCTTTCATGCTCACTTACTTATTTCAATATCGTCT-AGAACAGCTNATNAGAGCAA-TTTCCTAATCCGC----AAC--------------NTGTTTG--------CTGAA-----------ATTTTCT---ATT----TG------AATT---CT-GT----------A------TT-ATGTATCAAGCGCGCTGATTGGT--CCT------TCCTCG---------GGGAAGTGTA-TTTAGGACCAATCAGCGCGCTTNATACAT--A-------AT--TGA---NAAAT-----AGAAAATGGCAGACTTTGTTCAACATATNNGTTACGGANTAGAAAACTGNTCTGATA
gi|1 : AGGCAGGAGTAACGGACCTTGGTTAGTTCCT-----C---A-----------A------CCCC-------AT---CTGAC-TGTTTTT---------TT-T----TC-----A-----A---TTCT-TT-----------------T-TC-GG-----------TCC--ATCGTATA--AAA--CA-------A-A----CA---AACAA-ACAA---A--GCAAAAAAAA----A-GTGAC-AAACATA-AAATGAATA-A---AGGCTGT------ATACTTCAAGACACAGCCCACATACCACCAGCTGTCTTCAGACACCCGCTGTG-C-AAAAACTATAACGAATATTCTTATACAGCATACACTACTAAGGAATTTTCAATAGTTCCTTGGTATAACGTAATAAAATAAGCCTAACCACAGAAAAACTGAGTCAGCCGTTCCTGA-TAAGACC-------CTTTCAAATCGCCTAT-T-TG--G-A-G-CTAATAAATAAAGTCGTAACTAAAGTGGT-ACA-ACTTTTAA-CGGATT----AT--TACAAGACTAAACC-GGCCCAACACAACTGTAAGTTG-A---TATG---T------TA---TGTTTCAAGGAAAGTCAACAACAAATGAA-TCTTGCATGCTCACTTACTAATTTCAATATCATCTAAAAACAGCTCATGAGACCAA-TTTCCTAATCCAT----AAC--------------AAACATG--------ATGAA-----------ATTTTCT---ATT----TG------AATT---CT-GT----------A------TT-ATGTATCAAGGGCACTGACTGGT--CCT------TGCTCG---------GGAAAGTGTATTTTAGGACCAATCAGCGCACTTCATTTAT--A-------ATTATGACTTGAAAT-----AGAAAATGGCAGACTTTGTTTAACATCTTTGTTACGGATTAGAACACTGGTGTCATA
gi|10 : GTCAACAACAAATGAACTCGTTCATTCTCACTTACTTATTTCAATGTCATCT-TAAACAGATCACAAAACCAA-TTTTCTAATCCAT----AAT--------------TTGCTT-------------------------ATTGTCA---AT--------------ATA---CT-GC----------AATT---TT-ACGTCTCAAGTGCACTGATTGGT--CCT------TCCCCG---------GAGGAGTGTATTTTAGGACCAATCAGCGCACTTCATGCA---------------TGA---C--AT-----AGAAAATGGCAGACTTTGTTCAAAATGTTTGTTACGGATTgaccatattt
gi|11 : -----A---TTTA-TG-----------------T-TT-AA-----------CCC--ATCGTATA--TAA--CA-------A-A----CA---CACAA-A-AA------GTGGGGAAAA----ACGTGAC-AAACATA-AGTTGAGTA-A---AAGTCGT------TTA---CAAG---------ACTCAGCCCTAACTGTCTTCAGACACCCGCTGTG-CAAAAAACTATTAAGAGTATTCTTATACGGCATACAC-----A------------------------------GACATAA---GCCCAACAACAGAAATACTAAGCCAGCCGTTCCTGAACAAGACT-------CTTTCAAATCGCTAAT-T-AA--GAA-A-CTAAACAGTTTAGTCGTAAAaatagtaataaacaagttatattacacataaaaactgttataa
gi|12 : T----AA--TACAGGACTAAAAC-GGTTCGAAACAACTGTAGCCTG-T---GATG---ATAA---CA---CGTTTTAAGGTAAGTCAACATCAAATTTTTTCTTTCGTGCTCACTT--------CATTATCGCAT-AGAACAGCTGATCAGAGCAA-TTTTCTACTTCGC----AAC--------------TTGTTTG--------CTGAACG---------ATGTCCG---CCC----TG--------TT---CCAGCCAATAAAAAGA------TTGATGTATCAAGCGTGCTGATTGGT--CCT------gt
gi|13 : aACTGTCTTCAGCCACCCGCTGTG-C-AAAAACTATAACGAATATTCCTTTACGTCATACAC-----AGAACGCTGAAGGAG-------GTAATACTTGATAGAATAAGCC--ATATT-GACATATTGAGCCAGCCGTTCCTGCATATGACCCTAAAGGCTTTCAAATCATCCAT-TAAA--G-G-G-TTAaaatacccccccccccccccacacacacacacacacaca
gi|13 : tctTTAA-AGGGTT----AT--TACAATATTAATTC-GGCTTAACACAA-------CTG-G---TATGACAA------CA---TGTTCCAAGGAAAGTCAGCAAttacaatattaattcggcttaacacaactggtatgacaacatgttccaaggaaagtcagcaat
gi|14 : tctactgtcttcagccacccgctgtgcaaaaactataacgaatattcctttacgtcatacacagaacgctgaaggaggtaatacttgatagaataagccatattgacatattgagccagccgttcctgcatatgaccctaaaggctttcaaatcatcca-G-A-CTAGACAGTT-AGT----AA-AAAGTGGTTGTG-AATTTTAAACGGATT----ATATTACACGATTATAAC-GACTTAAAACAACTCTTGTCTG-A---TATG---A------CAGCATGTTTCAAGACAAATCAACAATAAATGAACTCTTTCATGCT----TACTTCTTTCAATATCATCA-AGTACAGCTTATCAGAGCAG-TTTCCTATTCCAC----AAA--------------TTATTTG--------CTGAA-----------t
gi|14 : cgctATGGCAGACTATGTTCAGCAAATAATTTGTGGAATAGGAAACTGCTCTGATAcatagtctgccatgt
gi|15 : cgctgactagacagttagtaaaaagtggttgtgaattttaaacggattatattacacgattataacgacttaaaacaactcttgtctgatatgacagcatgtttcaagacaaatcaacaataaatgaactctttcatgcttacttctttcaatatcatcaagtacagctAGGCAGGATTAATGAACCTTGGATGGTCCCT-----CTACC-----------A------CCCCCTCCCTCATACCCCAAT-T-TTTTTGTCAAATGTTT-T----TTGGTCAA-----A---TCTA-TG-----------------T-TC-AA-----------TCC--ATC---CA--AAA--CACCCATTTA-A----CA---AA--A-A-AA---A--ATAAAAAAAAT---A-G-----AAACAT----TTGAGTA-A---AGGCCTT------TCACTTCAACGAACGGCCCATATGCCCCCAACTGTCTgt
gi|16 : acGCATGAGTAACGGACCTTGGTTAGTTCCC-----C---T-----------A------TCTC-------AT---TTGA-----TTTT---------TT-T----TC-----A-----A---TTTT-GT-----------------T-TC--------------TCCAAAT-GTATGTTCAGTTCA-------A-T----CT---ATCAA-A-GATCTA--TTAAACAAAG----A--TGCCAAAACATA---TTAAGTATATTTATGTATTTTATTGTTACTTCAAGGCATAGCTCACATACCCACAACTG
gi|17 : acatGTTAGTCTCC-----C---C-----------A------CCCC-------TT---CTGAT-T-TTTTT---------TTCT----TC-----A-----A---TTTT-TT-----------------T-T--AA-----------TCC--ATTGTATA--TAA--CA-------ATA----AA---AAC
gi|17 : gcagttaaaaatACTTCAAGGATTAGCCCACATACCCTCAACTGTCTTCAGACACTC-----A-C-AAAAATTAGAATGAATGTTCTTATATGGTATACAttcaaggattagcccacataccctcaactgtcttcagacactcacaaaaattagaatgaatgttcttatatggtatacatgtacaatgaaagga
gi|18 : gcagttaaaaatgttagtctccccaccccttctgatttttttttcttcaattttttttaatccattgtatataacaataaaaAAGCAGGATAAATGGACCTTGGTTGGTCCCTCTCTAC---C-----------ACCCCCCCCCC-------ATACCCCAA----TTTCT---------TT-T----TC-----A-----T---TTTT-TTTTTTTGTCAAATCTATGT-TC-AA-----------TCC--ATC---CA--AAA--CA-------C-C----CATTTAACAA-------------AAAAAAAT----A-GTGAG-AAACATA-tgtacaatgaaagga
gi|19 : acAAGGAACGGTCCACTTACCACCGACTGTCTTCAGACAT-------------AAACGATAAAGGATATTCATAAACACTATACAC-----AGAAAGCTAGCGGAA-------GTATTACGTGACAAAATAAGCACAACtatt
gi|19 : AA-CGGGTT----AT--TATAAGACTAgggttattataagactattatgcc
gi|2 : aaggaacggtccacttaccaccgactgtcttcagacataaacgataaaggatattcataaacactatacacagaaagctagcggaagtattacgtgacaaaataagcacGGCAGTAGCAATGAACCATAGTCAGTTCCC-----C---C-----------A------TTCT-------AT---CTGAT-T-TTTTT---------TT-TAAAATCTTAA-A-----A---TTTA-TG-----------------T-TC-AA-----------TCC--ATCGTATA--TAA--CA-------A-AGAAACG---AACAA-A-AA---ATGATAATAATAA----A-GTGAC-AAACATC-AGTTGAGAA-A---AGGCATT------TTACTTCAAAGCACAGCCCACATACCACCAACTGTCTTCACACACCCGCTGT-----------ATAACGAATGTTCTGATACGGCATACAC-----AGACAACCAGAGGAG-------AAATCACGTGACAAAATAAGCCGAACGACAGAAATATTGAGCCAACCGTTCATGAATAAGACC-------CTTTCAAATCGCCCTT-T-AATGG-A-G-CTAAAAAGTTAAGTCGTAAATAAAGTTGC-ACA-AATATTTA-CGGATT----AT--TACAAGAC-AGAACTGACTCAACACAACTGTAGTCTG-GTACTACA---A------CA---TTTTTCAAGGAGAGTCAACAACAAATGAACTCTTTCATGCTCACTTACCTATTTAAATATCATCT-AAAACAGCTCATGAGA-CAGTTTTCCTAAATCGT----AACAATCAAATTGAACAATGTCTC--------CC--------------ATTTTCT---ATT----TG------AATT---TT-GT----------A------TT-GTACATGAAGCACGCTGATTGGT--CCTAAAATACCCCCACCCCACCCCGAGAA-T--------GGACCAATCAGTGCGCTTAATACAT--A-------AT--ttatgcc
gi|20 : TATCATCT-AGAACAGCCGATGAGAGAAA-TTTCCATATCCAT----AAC--------------TTGTTAA--------CTGAAT----------GTTTACTGCCATT----T--------ACTAGCCA-AT----------AAGGAGTTT-ACGTACCAAACGCACCGATTGGT--CCT------TCCTTG---------GGTA--TGTA-TT
gi|21 : AGCCAGAAATAACGGGCTGTTGTTATTCTCT-----C---T-----------A------TCCC-------GT---C---------TTT---------TT-T----TC-----------A---CTTT-TT-----------------T-TC-AA-----------
gi|22 : gaccacAGGCAGGATTAGTTGACCTTGGTTGGTCCCTCCCTAC---C-----------A------CTCC-------AA---CCGaattttatcaaaattttctttaaaattttttttcaattctatgttcaatccatcct
gi|23 : acA---AACAA-AGAA---A--G--AAGAAAA----A-GTGAC-CAACATA-AGTTGAGTA-A---AGATCTT------TTACTTCAAGGAAcccagttacaaatttgtggttatatattttattttaaaattaaatatgcgcagatcctctcaatacac
gi|24 : aattttatttggtcaaatctatgcccaaaattattgaaagtaccaacttattACTTATATCATTATCGCCT-AGAACAGCTGATCAGAACAA-TTTTCTACTCCGA----AAC--------------TTGTTTG--------CTGAA-----------
gi|24 : CGCTTGATACATCAATCTTTTTAT--TGG---C---C-----GGAACATGGTGGACATCGTTCAGCAAACAAGTTTCGGAGTAGAAAATTGTTCTGATcgatgtccaccatgttccggccaataaaaagattgatgtatcaagcg
gi|25 : acttatatcattatcgcctagaacagctgAAAAACT--A-GTAAC-AAACATA-AATTGAGTA-A---AGGCCTT------CTACGTCAAGGAAAGGC
gi|27 : ttttttttctcacggaccctgttttgtcaaatttaatccatgttcagtccattACAAGACTAAAAC-GGCTTAACACAACTATAGCCTG-G---TATG---A------CA---TGTTTCAATGTAAGTCAACAACAAATGAACTCTTTCATATACATTT-CTT
gi|28 : tacttcaaggaagGGTTAGTCCCC-----C---T-----------A------CCTC-------AT---CTGAT-T-TTAGT---------TT-T-----C-----A-----G---TTTT-TTTCTTC------------T-TC-AGATCTGTGTTGTTCC--ATCATATA--TAA--TA-------
gi|29 : TTT---------TT-T----TC-----A-----A---TTCTATG-----------------T-TC-AA-----------TCC--ATCCTATA--TAA--CA-------A-A----CA---AACAG-A-CA------TTAAAATCC-------GTAAC-AAACAT---TTTGAACA-A---AGttagggtcaaaacat
gi|3 : AGGCAGGAGAAACGGACTTTGGTTGGTCCTC-----C---T-----------T------CCCA-------AT---CAGA-----TTAT---------AT-T----TC-----A-----AAACTTAT-TT-----------------T-TC-tctg
gi|3 : cT-T-TTCTT---------TT-T----T----------------TTTT-TT-----------------T-TCAAA-----------TTC--A-CATATA--ttgtttttttcttttttttttttttcaaattcacatatattttcaattatatgttcaatccatcatacacattacacgaagaaagaaacaaaaatggtaacaaacataaagctttttacttcgaagcacagcccatataccccaactgtcttcagacaaccgctttgcaaaaactatgacgaatattcttatacgaaatgcttagccaggtggtcgatgtattacgtgacaaaataagcccaacaacagaaatattgagccaaccattcctgaataagaccctttcaaatcgcccatttaggtgctaaaatgtttagtcgtaaataaagtgacacacattttaacggattattgcaagactaaaccggctcaacacaactgtagtctggtatgacaacgtcatgtttcaaggaaagtcaacaacaaatgaactctttcatgctcactttcttattttaatatcatctaaaacagctcataaaata
gi|3 : caggcaggagaaacggactttggttggtcctccttcccaatcagattatatttcaaaacttatttttcttgttt---------TT-T----TC-----A-----A---TTATATG-----------------T-TC-AA-----------TCC--ATCATACA--CAT--TA-------C-A----CG---AAGAA-A-GA---A----ACAAAAAT----G-GTAAC-AAACATA-AA--------------GCTTT------TTACTTCGAAGCACAGCCCATATACCCC-AACTGTCTTCAGACAACCGCTTTG-C-AAAAACTATGACGAATATTCTTATACGAAATGCTT-----AGCCAGGTGGTCGAT-------GTATTACGTGACAAAATAAGCCCAACAACAGAAATATTGAGCCAACCATTCCTGAATAAGACC-------CTTTCAAATCGCCCAT-T-TA--G-GTG-CTAAAATGTTTAGTCGTAAATAAAGTGAC-ACA-CATTTTAA-CGGATT----AT--TGCAAGACTAAACC-GGCTCAACACAACTGTAGTCTG-G---TATG---ACAACGTCA---TGTTTCAAGGAAAGTCAACAACAAATGAACTCTTTCATGCTCACTTTCTTATTTTAATATCATCT-AAAACAGCTCATAAAAttttcaattatatgttcaatccatcatacacattacacgaagaaagaaacaaaaatggtaacaaacataaagctttttacttcgaagcacagcccatataccccaactgtcttcagacaaccgctttgcaaaaactatgacgaatattcttatacgaaatgcttagccaggtggtcgatgtattacgtgacaaaataagcccaacaacagaaatattgagccaaccattcctgaataagaccctttcaaatcgcccatttaggtgctaaaatgtttagtcgtaaataaagtgacacacattttaacggattattgcaagactaaaccggctcaacacaactgtagtctggtatgacaacgtcatgtttcaaggaaagtcaacaacaaatgaactctttcatgctcactttcttattttaatatcatctaaaacagctcataaaata
gi|30 : caggcaggagaaacggactttggttggtcctccttcccaatcagattatatttcaaaacttatttttcttgtttttttcttttttttttttttcaaattcacatataAGACAGAAGTAACGGACCTTGGCTAGTACCT---------T-----------A------CCCC-------AT---CTGA-----CTTT---------TT-T----CC-----A-----A---TTGT-TT-----------------T-TC-AA-----------ta
gi|31 : ccatAGGCAGGCGTAACGGACATTAGTTAGTACCG-----C---T-----------G------CCCC-------GT---CTGAT-T-TTTTattgt
gi|4 : attcacAAACAA----A-GTGAC-AAACATA-AGTCGAATA-A---AGTGCTT------TTATTTCAAGGAAT---------------AA-----TTCATACGCC----GTT-C-AAAAACTATAACGGATATTTTAATACGACATACAC-----ATAAATCTAGGAAAG-------GTATTGCGTAACAAAATAATCACAAAATTAAAACTATTGAGTCAGCCGTTCCGGAATAAGACC-------CTTTCACATCGCCAATAT-C-----G-G-CTAAACAGTTTAGTCGTAAATAAAGTGGT-ATA----TTTAA-CTATTTTGACAT--TTTAAGAATAGAAC-TGCTCAAAACAACCCTAGCCTG-G---TATGGCAA------CA---TGTTTCAAGGTAAGTCAACAACACAGCATTTCTGTCATGCTCACTTATGTTTATCAATATCATCT-GAAACAGCTGAT--GAGC-----------TCCAC----AAC--------------TTGTTTG--------CTGAACAATGTCTGCCATTTTCC---AGT----CA------A--T---AT-GTAG--------A------GT-ATATACGAAGCGCACTGATTGGT--CCT------TCCTTG---------GG---GTGT--TTAAAGACCAATCAGCGCGCTTCATACAT--A-------AT--TCA---GAAATCAAACAAAAAATGGCAGACTATGT--AACATcc
gi|5 : GGATTAATGGACCTTGGTTGGTCTCT-----C---CCTACCACACCCA------CCCCCAC----AC---CCCAA-T-TATTT---------TT-T----TC-----A-----A---TTTtt
gi|5 : TTGAGTA-A---AGGCCTT------TCACTTCAACGAACGGCCCATATACCCCCAACTGTCTTTAGACACCCGCTGTGGC-AAAAACTATTAAAACTATTCTTACACGGCATACAC-----AGAAAGCTAGAGGAG-------GTATTACGTGACAAAATAAGCCTAACATTAGAACTATCGAGCCAGCCGTTCAGGAATAAGACC-------CTTTCAAGTCGCAACT-T-CA--GCG-G-CTAAATCGCTTAAACGACAATAAAGTGGC-ATATTATTTT-A-CGGGTT----AA--TACAGGACTAAAAC-GGCTCGAAACAACTGTAGCCTGTGAT-TATA---A------CA---CATTTTAAGGTAAGTCAACATCAAATTAATTCTTTCGTGCTCACTTACTTATTTCATTATCGCCT-AGAACAGCTGATCAatatatatatttgagtaaaggcctttcacttcaacgaacggcccatatacccccaactgtctttagacacccgctgtggcaaaaactattaaaactattcttacacggcatacacagaaagctagaggaggtattacgtgacaaaataagcctaacattagaactatcgagccagccgttcaggaataagaccctttcaagtcgcaacttcagcggctaaatcgcttaaacgacaataaagtggcatattattttacgggttaatacaggactaaaacggctcgaaacaactgtagcctgtgattataacacattttaaggtaagtcaacatcaaattaattctttcgtgctcacttacttatttcattatcgcctagaacagctgatcatcggccattccagaataacga
gi|6 : ggattaatggaccttggttggtctctccctaccacacccacccccacaccccaattatttttttcaatttatatatatatTTAA-AGGGTT----AT--TACAATATTAATTC-GGCTTAACACAA-------CTG-G---TATGACAA------CA---TGTTCCAAGGAAAGTCAGCAATAAtcggccattccagaataacga
gi|6 : AACACAGCTGTAACCTG-T---TATG---A------CAATTTGTTTCAAGGAATGCCAACAACAGATGAACCCTTTCATGTTGACTCACTTATTTCAGTATCATCT-AAAACAGCTTATGAGACCAT-TTTCCTAATCCATAATGAAC--------------ATG-TTGAACAAAGTCTGTT-----------ATTTTCT---ATT----TA------AATT---CT-GT----------A------TT-ATGCACGAATGAAGTTGATTGGTGCCCC------GCCTCG---------AAGA----------AGGACCAATCAGTGTGCTTGATACAT-----------T--TGA---AACAT-----Ataagtagattatgtttcaaatgtatcaagcacactgattggtccttcttcgaggcggggcaccaatcaacttcattcgtgcataatacagaatttaaatagaaaataacagactttgttcaacatgttcattatggattaggaaaatggtctcataagctgttttagatgatactgaaataagtgagtcaacatgaaagggttcatctgttgttggcattccttgaaacaaattgtcataacaggttacagctgtgtttttcgacaagaactcattttacatggatggaatagaaaatgtgaaaagtaaacaattatataaacg
gi|7 : ttaaagggttattacaatattaattcggcttaacacaactggtatgacaacatgttccaaggaaagtcagcaataataagtagatTAACGACTATTCTAAAACG-----C-C-----AGAAGGCTAGACGAG-------GTATCACGTGACAAAGTAAGCACAACACCAGAATAATAGAGCCAAACGTTCAAGAAAAATACG-------TTTTCAAATCGTCCAT-T-AA--G-G-GACTAAAACGTTTAGTCGACAATAA--TGGT-A----ATTTTCA-CGGGTT----AT--TCCAATGCTACAAC-GGTTTGAAAGAAATGTAGCCTG-G---TATG---A------CAACATGTTTCAAAGTAAGTTAACAACATTTGAACTCTTTCATGCTCACTTACTTATATCAATGTCGCCT-GGAACAGCTGATTAGAGCAA-ATTCCTGATCCGC----AAT--------------ATGTTTG--------CTG-A-----------CTGTTC----ATTGACATGTCTAGCAAAT---CA-GTAG--------A------TT-ATGTATCAAGCCCGCTTATTGGTA-ATT------TCCTtttcgacaagaactcattttacatggatggaatagaaaatgtgaaaagtaaacaattatataaacg
gi|8 : AGGCCGGATTAATGGACCTTGGTTGATCCCT-----C---CCTACCACCCTTA------CCCC-------ATACCCCAAA-T-TTTTT---------TT-G----TC-----A-----A---TTTT-TT-----------------TGTC-AA-----------ATC--TTTGTTCA--ATC--CA-------T-C----CA---AAAAATA-AA---A--GTAAAATAAATGATA-GTGAG-AAACATATATTTGAGTA-A---AGGCCTT------TCACTTCAACGAACGGCCCATATACCCC-AACTGTCTTTACACACCGGCTGTG-C-AAAAACTATTAAGATTATTCTTACACGGCATGCAC-----AGAAAGCTAGAGGAG-------GTATTACGTGACAAAATAAGCCTAACATCAGAACTATCGAGCCAGCCGTTCttggatgttt
gi|9 : AGACAGGAATAACGGAC----ATTGGTCCC------C---C-----------A------CCCC-------TT---C--ATAT-TTTTT---------TT-T----TC-----AGAAATA---TTTT-TT-----------------T-a
gi|9 : cacAACAA----A-GTTTA-AAACATA-AGTTGAGTA-A---AACCTTT------TTACTACTAGCAACAGTCCACATACCCCCAACTGTTTTCTGATACCCGCTGTG-T-AAAAACTATAACGAATATatatatatatatttttttcaatctgtgttcaatccacaggacgtatcttacttatcttttggatagctatcgatataaagtaaattaactacatatagctatccaaaaggtatagtaagatagggcctgtggttcaatcaacaaagtttaaaacataagttgagtaaaacctttttactactagcaacagtccacatacccccaactgttttctgatacccgctgtgtaaaaactataacgaatat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): CAAAGGCAAGATTAACGAACCTTGAGCGTTCTCATCCTCTCTTTTTTTATTTATTTATATTTTTTTATTGTCAAATCTATGTTCAAATCAGTCAAAATGCCCCTTT
Alignments
lowQualScore : 33333333333333333333333333333 11111111111111111111 111111111 11111111111 22222222222222222 11111111111 22222222222222 22222222222 1111 11111 1111111 1111111 1111111 1111 11111 2222222222 111 2222222222222222 88888888888888888888888888888888888888888888888888888888888888888 11 111111 55555555555555555555555 555555555555555555555555555555
lowQualScore : 2 77777777777777777777777777777 99999999999999999999 000000000 2 5555 33333333333 444 5 33333333333333333 2 2 33333333333 44 4 555 55 11111111111111 666 4 33333333333 3333 3 3 4444 3 555 999999 3 1 44 3 2 00000 0 3333333 2 1 1 0 6666666 1 5 3333333 4 4 11 3 0 5 4444 0 4 7777 55 0 3 0 0 0 00000 6666666666 777 1 1 0 0 3 1 4 4 4 0 0 5555555555555555 55 0 00000000000000000000000000000000000000000000000000000000000000000 5 11 444444 88888888888888888888888 1 888888888888888888888888888888 1 0 22 22 1 1 1
lowQualScore : . ............................. .................... ......... . .... ........... ... . ................. . . ........... .. . ... .. .............. ... . ........... .... . . .... . ... ...... . . .. . . ..... . ....... . . . . ....... . . ....... . . .. . . . .... . . .... .. . . . . . ..... .......... ... . . . . . . . . . . . ................ .. . ................................................................. . .. ...... ....................... . .............................. . . .. .. . . .
lowQualScore : 1 00000000000000000000000000000 88888888888888888888 000000000 5 3333 00000000000 111 0 88888888888888888 5 7 66666666666 66 4 666 00 11111111111111 444 0 88888888888 8888 1 1 9999 1 444 666666 2 8 22 6 0 00000 7 0000000 3 0 9 2 2222222 4 0 9999999 4 4 22 6 5 7 9999 9 0 7777 00 1 6 4 4 2 66666 1111111111 555 0 3 3 7 3 0 2 1 0 8 5 3333333333333333 55 7 00000000000000000000000000000000000000000000000000000000000000000 0 99 444444 88888888888888888888888 0 000000000000000000000000000000 4 8 22 00 2 0 0
consensus : AGGCAGGAGTAACGGACCTTGGTTGGTCCCT-----C---C-----------A------CCCC-------AT---CCGAT-T-TTTTT---------TT-T----TC-----A-----A---TTTT-TT-----------------T-TC-AA-----------TCC--ATCGTATA--NAA--CA-------A-A----CA---AACAA-A-AA---A--GTAAAAAAAA----A-GTGAC-AAACATA-AGTTGAGTA-A---AGGCCTT------TTACTTCAAGGAACGGCCCACATACCCCCAACTGTCTTCAGACACCCGCTGTG-C-AAAAACTATAACGAATATTCTTATACGGCATACAC-----AGAAAGCTAGAGGAG-------GTATTACGTGACAAAATAAGCCCAACANCAGAAATATTGAGCCAGCCGTTCCTGAATAAGACC-------CTTTCAAATCGCCCAT-T-NA--G-G-G-CTAAANAGTTTAGTCGTAAATAAAGTGGC-ACA-AATTTTAA-CGGGTT----AT--TACAAGACTAAAAC-GGCTCAACACAACTGTAGCCTG-G---TATG---A------CA---TGTTTCAAGGNAAGTCAACAACAAATGAACTCTTTCATGCTCACTTACTTATTTCAATATCGTCT-AGAACAGCTNATNAGAGCAA-TTTCCTAATCCGCAAC--T------------TG--TTTGCTGAA-----------ATTTTCT---ATT----TG------AATT---CT-GT----------A------TT-ATGTATCAAGCGCGCTGATTGGT--CCT------TCCTCG---------GGGAAGTGTA-TTTAGGACCAATCAGCGCGCTTNATACAT--A-------AT--TGA---NAAAT-----AGAAAATGGCAGACTTTGTTCAACATATNNGTTACGGANTAGAAAACTGNTCTGATA
Reference ( family-1098 ) : AGGCAGGAGTAACGGACCTTGGTTGGTCCCT-----C---C-----------A------CCCC-------AT---CCGAT-T-TTTTT---------TT-T----TC-----A-----A---TTTT-TT-----------------T-TC-AA-----------TCC--ATCGTATA--NAA--CA-------A-A----CA---AACAA-A-AA---A--GTAAAAAAAA----A-GTGAC-AAACATA-AGTTGAGTA-A---AGGCCTT------TTACTTCAAGGAACGGCCCACATACCCCCAACTGTCTTCAGACACCCGCTGTG-C-AAAAACTATAACGAATATTCTTATACGGCATACAC-----AGAAAGCTAGAGGAG-------GTATTACGTGACAAAATAAGCCCAACANCAGAAATATTGAGCCAGCCGTTCCTGAATAAGACC-------CTTTCAAATCGCCCAT-T-NA--G-G-G-CTAAANAGTTTAGTCGTAAATAAAGTGGC-ACA-AATTTTAA-CGGGTT----AT--TACAAGACTAAAAC-GGCTCAACACAACTGTAGCCTG-G---TATG---A------CA---TGTTTCAAGGNAAGTCAACAACAAATGAACTCTTTCATGCTCACTTACTTATTTCAATATCGTCT-AGAACAGCTNATNAGAGCAA-TTTCCTAATCCGCAAC--T------------TG--TTTGCTGAA-----------ATTTTCT---ATT----TG------AATT---CT-GT----------A------TT-ATGTATCAAGCGCGCTGATTGGT--CCT------TCCTCG---------GGGAAGTGTA-TTTAGGACCAATCAGCGCGCTTNATACAT--A-------AT--TGA---NAAAT-----AGAAAATGGCAGACTTTGTTCAACATATNNGTTACGGANTAGAAAACTGNTCTGATA
gi|1 : AGGCAGGAGTAACGGACCTTGGTTAGTTCCT-----C---A-----------A------CCCC-------AT---CTGAC-TGTTTTT---------TT-T----TC-----A-----A---TTCT-TT-----------------T-TC-GG-----------TCC--ATCGTATA--AAA--CA-------A-A----CA---AACAA-ACAA---A--GCAAAAAAAA----A-GTGAC-AAACATA-AAATGAATA-A---AGGCTGT------ATACTTCAAGACACAGCCCACATACCACCAGCTGTCTTCAGACACCCGCTGTG-C-AAAAACTATAACGAATATTCTTATACAGCATACACTACTAAGGAATTTTCAATAGTTCCTTGGTATAACGTAATAAAATAAGCCTAACCACAGAAAAACTGAGTCAGCCGTTCCTGA-TAAGACC-------CTTTCAAATCGCCTAT-T-TG--G-A-G-CTAATAAATAAAGTCGTAACTAAAGTGGT-ACA-ACTTTTAA-CGGATT----AT--TACAAGACTAAACC-GGCCCAACACAACTGTAAGTTG-A---TATG---T------TA---TGTTTCAAGGAAAGTCAACAACAAATGAA-TCTTGCATGCTCACTTACTAATTTCAATATCATCTAAAAACAGCTCATGAGACCAA-TTTCCTAATCCATAAC--A------------AA--CATGATGAA-----------ATTTTCT---ATT----TG------AATT---CT-GT----------A------TT-ATGTATCAAGGGCACTGACTGGT--CCT------TGCTCG---------GGAAAGTGTATTTTAGGACCAATCAGCGCACTTCATTTAT--A-------ATTATGACTTGAAAT-----AGAAAATGGCAGACTTTGTTTAACATCTTTGTTACGGATTAGAACACTGGTGTCATA
gi|10 : GTCAACAACAAATGAACTCGTTCATTCTCACTTACTTATTTCAATGTCATCT-TAAACAGATCACAAAACCAA-TTTTCTAATCCATAAT--T------------TG--CTT-----------------ATTGTCA---AT--------------ATA---CT-GC----------AATT---TT-ACGTCTCAAGTGCACTGATTGGT--CCT------TCCCCG---------GAGGAGTGTATTTTAGGACCAATCAGCGCACTTCATGCA---------------TGA---C--AT-----AGAAAATGGCAGACTTTGTTCAAAATGTTTGTTACGGATTgaccatattt
gi|11 : -----A---TTTA-TG-----------------T-TT-AA-----------CCC--ATCGTATA--TAA--CA-------A-A----CA---CACAA-A-AA------GTGGGGAAAA----ACGTGAC-AAACATA-AGTTGAGTA-A---AAGTCGT------TTA---CAAG---------ACTCAGCCCTAACTGTCTTCAGACACCCGCTGTG-CAAAAAACTATTAAGAGTATTCTTATACGGCATACAC-----A------------------------------GACATAA---GCCCAACAACAGAAATACTAAGCCAGCCGTTCCTGAACAAGACT-------CTTTCAAATCGCTAAT-T-AA--GAA-A-CTAAACAGTTTAGTCGTAAAaatagtaataaacaagttatattacacataaaaactgttataa
gi|12 : T----AA--TACAGGACTAAAAC-GGTTCGAAACAACTGTAGCCTG-T---GATG---ATAA---CA---CGTTTTAAGGTAAGTCAACATCAAATTTTTTCTTTCGTGCTCACTT--------CATTATCGCAT-AGAACAGCTGATCAGAGCAA-TTTTCTACTTCGCAAC--T------------TG--TTTGCTGAACG---------ATGTCCG---CCC----TG--------TT---CCAGCCAATAAAAAGA------TTGATGTATCAAGCGTGCTGATTGGT--CCT------gt
gi|13 : aACTGTCTTCAGCCACCCGCTGTG-C-AAAAACTATAACGAATATTCCTTTACGTCATACAC-----AGAACGCTGAAGGAG-------GTAATACTTGATAGAATAAGCC--ATATT-GACATATTGAGCCAGCCGTTCCTGCATATGACCCTAAAGGCTTTCAAATCATCCAT-TAAA--G-G-G-TTAaaatacccccccccccccccacacacacacacacacaca
gi|13 : tctTTAA-AGGGTT----AT--TACAATATTAATTC-GGCTTAACACAA-------CTG-G---TATGACAA------CA---TGTTCCAAGGAAAGTCAGCAAttacaatattaattcggcttaacacaactggtatgacaacatgttccaaggaaagtcagcaat
gi|14 : tctactgtcttcagccacccgctgtgcaaaaactataacgaatattcctttacgtcatacacagaacgctgaaggaggtaatacttgatagaataagccatattgacatattgagccagccgttcctgcatatgaccctaaaggctttcaaatcatcca-G-A-CTAGACAGTT-AGT----AA-AAAGTGGTTGTG-AATTTTAAACGGATT----ATATTACACGATTATAAC-GACTTAAAACAACTCTTGTCTG-A---TATG---A------CAGCATGTTTCAAGACAAATCAACAATAAATGAACTCTTTCATGCT----TACTTCTTTCAATATCATCA-AGTACAGCTTATCAGAGCAG-TTTCCTATTCCACAAA--T------------TA--TTTGCTGAA-----------t
gi|14 : cgctATGGCAGACTATGTTCAGCAAATAATTTGTGGAATAGGAAACTGCTCTGATAcatagtctgccatgt
gi|15 : cgctgactagacagttagtaaaaagtggttgtgaattttaaacggattatattacacgattataacgacttaaaacaactcttgtctgatatgacagcatgtttcaagacaaatcaacaataaatgaactctttcatgcttacttctttcaatatcatcaagtacagctAGGCAGGATTAATGAACCTTGGATGGTCCCT-----CTACC-----------A------CCCCCTCCCTCATACCCCAAT-T-TTTTTGTCAAATGTTT-T----TTGGTCAA-----A---TCTA-TG-----------------T-TC-AA-----------TCC--ATC---CA--AAA--CACCCATTTA-A----CA---AA--A-A-AA---A--ATAAAAAAAAT---A-G-----AAACAT----TTGAGTA-A---AGGCCTT------TCACTTCAACGAACGGCCCATATGCCCCCAACTGTCTgt
gi|16 : acGCATGAGTAACGGACCTTGGTTAGTTCCC-----C---T-----------A------TCTC-------AT---TTGA-----TTTT---------TT-T----TC-----A-----A---TTTT-GT-----------------T-TC--------------TCCAAAT-GTATGTTCAGTTCA-------A-T----CT---ATCAA-A-GATCTA--TTAAACAAAG----A--TGCCAAAACATA---TTAAGTATATTTATGTATTTTATTGTTACTTCAAGGCATAGCTCACATACCCACAACTG
gi|17 : acatGTTAGTCTCC-----C---C-----------A------CCCC-------TT---CTGAT-T-TTTTT---------TTCT----TC-----A-----A---TTTT-TT-----------------T-T--AA-----------TCC--ATTGTATA--TAA--CA-------ATA----AA---AAC
gi|17 : gcagttaaaaatACTTCAAGGATTAGCCCACATACCCTCAACTGTCTTCAGACACTC-----A-C-AAAAATTAGAATGAATGTTCTTATATGGTATACAttcaaggattagcccacataccctcaactgtcttcagacactcacaaaaattagaatgaatgttcttatatggtatacatgtacaatgaaagga
gi|18 : gcagttaaaaatgttagtctccccaccccttctgatttttttttcttcaattttttttaatccattgtatataacaataaaaAAGCAGGATAAATGGACCTTGGTTGGTCCCTCTCTAC---C-----------ACCCCCCCCCC-------ATACCCCAA----TTTCT---------TT-T----TC-----A-----T---TTTT-TTTTTTTGTCAAATCTATGT-TC-AA-----------TCC--ATC---CA--AAA--CA-------C-C----CATTTAACAA-------------AAAAAAAT----A-GTGAG-AAACATA-tgtacaatgaaagga
gi|19 : acAAGGAACGGTCCACTTACCACCGACTGTCTTCAGACAT-------------AAACGATAAAGGATATTCATAAACACTATACAC-----AGAAAGCTAGCGGAA-------GTATTACGTGACAAAATAAGCACAACtatt
gi|19 : AA-CGGGTT----AT--TATAAGACTAgggttattataagactattatgcc
gi|2 : aaggaacggtccacttaccaccgactgtcttcagacataaacgataaaggatattcataaacactatacacagaaagctagcggaagtattacgtgacaaaataagcacGGCAGTAGCAATGAACCATAGTCAGTTCCC-----C---C-----------A------TTCT-------AT---CTGAT-T-TTTTT---------TT-TAAAATCTTAA-A-----A---TTTA-TG-----------------T-TC-AA-----------TCC--ATCGTATA--TAA--CA-------A-AGAAACG---AACAA-A-AA---ATGATAATAATAA----A-GTGAC-AAACATC-AGTTGAGAA-A---AGGCATT------TTACTTCAAAGCACAGCCCACATACCACCAACTGTCTTCACACACCCGCTGT-----------ATAACGAATGTTCTGATACGGCATACAC-----AGACAACCAGAGGAG-------AAATCACGTGACAAAATAAGCCGAACGACAGAAATATTGAGCCAACCGTTCATGAATAAGACC-------CTTTCAAATCGCCCTT-T-AATGG-A-G-CTAAAAAGTTAAGTCGTAAATAAAGTTGC-ACA-AATATTTA-CGGATT----AT--TACAAGAC-AGAACTGACTCAACACAACTGTAGTCTG-GTACTACA---A------CA---TTTTTCAAGGAGAGTCAACAACAAATGAACTCTTTCATGCTCACTTACCTATTTAAATATCATCT-AAAACAGCTCATGAGA-CAGTTTTCCTAAATCGTAACAATCAAATTGAACAATG--TCTCCC--------------ATTTTCT---ATT----TG------AATT---TT-GT----------A------TT-GTACATGAAGCACGCTGATTGGT--CCTAAAATACCCCCACCCCACCCCGAGAA-T--------GGACCAATCAGTGCGCTTAATACAT--A-------AT--ttatgcc
gi|20 : TATCATCT-AGAACAGCCGATGAGAGAAA-TTTCCATATCCATAAC--T------------TG--TTAACTGAAT----------GTTTACTGCCATT----T--------ACTAGCCA-AT----------AAGGAGTTT-ACGTACCAAACGCACCGATTGGT--CCT------TCCTTG---------GGTA--TGTA-TT
gi|21 : AGCCAGAAATAACGGGCTGTTGTTATTCTCT-----C---T-----------A------TCCC-------GT---C---------TTT---------TT-T----TC-----------A---CTTT-TT-----------------T-TC-AA-----------
gi|22 : gaccacAGGCAGGATTAGTTGACCTTGGTTGGTCCCTCCCTAC---C-----------A------CTCC-------AA---CCGaattttatcaaaattttctttaaaattttttttcaattctatgttcaatccatcct
gi|23 : acA---AACAA-AGAA---A--G--AAGAAAA----A-GTGAC-CAACATA-AGTTGAGTA-A---AGATCTT------TTACTTCAAGGAAcccagttacaaatttgtggttatatattttattttaaaattaaatatgcgcagatcctctcaatacac
gi|24 : aattttatttggtcaaatctatgcccaaaattattgaaagtaccaacttattACTTATATCATTATCGCCT-AGAACAGCTGATCAGAACAA-TTTTCTACTCCGAAAC--T------------TG--TTTGCTGAA-----------
gi|24 : CGCTTGATACATCAATCTTTTTAT--TGG---C---C-----GGAACATGGTGGACATCGTTCAGCAAACAAGTTTCGGAGTAGAAAATTGTTCTGATcgatgtccaccatgttccggccaataaaaagattgatgtatcaagcg
gi|25 : acttatatcattatcgcctagaacagctgAAAAACT--A-GTAAC-AAACATA-AATTGAGTA-A---AGGCCTT------CTACGTCAAGGAAAGGC
gi|27 : ttttttttctcacggaccctgttttgtcaaatttaatccatgttcagtccattACAAGACTAAAAC-GGCTTAACACAACTATAGCCTG-G---TATG---A------CA---TGTTTCAATGTAAGTCAACAACAAATGAACTCTTTCATATACATTT-CTT
gi|28 : tacttcaaggaagGGTTAGTCCCC-----C---T-----------A------CCTC-------AT---CTGAT-T-TTAGT---------TT-T-----C-----A-----G---TTTT-TTTCTTC------------T-TC-AGATCTGTGTTGTTCC--ATCATATA--TAA--TA-------
gi|29 : TTT---------TT-T----TC-----A-----A---TTCTATG-----------------T-TC-AA-----------TCC--ATCCTATA--TAA--CA-------A-A----CA---AACAG-A-CA------TTAAAATCC-------GTAAC-AAACAT---TTTGAACA-A---AGttagggtcaaaacat
gi|3 : AGGCAGGAGAAACGGACTTTGGTTGGTCCTC-----C---T-----------T------CCCA-------AT---CAGA-----TTAT---------AT-T----TC-----A-----AAACTTAT-TT-----------------T-TC-tctg
gi|3 : cT-T-TTCTT---------TT-T----T----------------TTTT-TT-----------------T-TCAAA-----------TTC--A-CATATA--ttgtttttttcttttttttttttttcaaattcacatatattttcaattatatgttcaatccatcatacacattacacgaagaaagaaacaaaaatggtaacaaacataaagctttttacttcgaagcacagcccatataccccaactgtcttcagacaaccgctttgcaaaaactatgacgaatattcttatacgaaatgcttagccaggtggtcgatgtattacgtgacaaaataagcccaacaacagaaatattgagccaaccattcctgaataagaccctttcaaatcgcccatttaggtgctaaaatgtttagtcgtaaataaagtgacacacattttaacggattattgcaagactaaaccggctcaacacaactgtagtctggtatgacaacgtcatgtttcaaggaaagtcaacaacaaatgaactctttcatgctcactttcttattttaatatcatctaaaacagctcataaaata
gi|3 : caggcaggagaaacggactttggttggtcctccttcccaatcagattatatttcaaaacttatttttcttgttt---------TT-T----TC-----A-----A---TTATATG-----------------T-TC-AA-----------TCC--ATCATACA--CAT--TA-------C-A----CG---AAGAA-A-GA---A----ACAAAAAT----G-GTAAC-AAACATA-AA--------------GCTTT------TTACTTCGAAGCACAGCCCATATACCCC-AACTGTCTTCAGACAACCGCTTTG-C-AAAAACTATGACGAATATTCTTATACGAAATGCTT-----AGCCAGGTGGTCGAT-------GTATTACGTGACAAAATAAGCCCAACAACAGAAATATTGAGCCAACCATTCCTGAATAAGACC-------CTTTCAAATCGCCCAT-T-TA--G-GTG-CTAAAATGTTTAGTCGTAAATAAAGTGAC-ACA-CATTTTAA-CGGATT----AT--TGCAAGACTAAACC-GGCTCAACACAACTGTAGTCTG-G---TATG---ACAACGTCA---TGTTTCAAGGAAAGTCAACAACAAATGAACTCTTTCATGCTCACTTTCTTATTTTAATATCATCT-AAAACAGCTCATAAAAttttcaattatatgttcaatccatcatacacattacacgaagaaagaaacaaaaatggtaacaaacataaagctttttacttcgaagcacagcccatataccccaactgtcttcagacaaccgctttgcaaaaactatgacgaatattcttatacgaaatgcttagccaggtggtcgatgtattacgtgacaaaataagcccaacaacagaaatattgagccaaccattcctgaataagaccctttcaaatcgcccatttaggtgctaaaatgtttagtcgtaaataaagtgacacacattttaacggattattgcaagactaaaccggctcaacacaactgtagtctggtatgacaacgtcatgtttcaaggaaagtcaacaacaaatgaactctttcatgctcactttcttattttaatatcatctaaaacagctcataaaata
gi|30 : caggcaggagaaacggactttggttggtcctccttcccaatcagattatatttcaaaacttatttttcttgtttttttcttttttttttttttcaaattcacatataAGACAGAAGTAACGGACCTTGGCTAGTACCT---------T-----------A------CCCC-------AT---CTGA-----CTTT---------TT-T----CC-----A-----A---TTGT-TT-----------------T-TC-AA-----------ta
gi|31 : ccatAGGCAGGCGTAACGGACATTAGTTAGTACCG-----C---T-----------G------CCCC-------GT---CTGAT-T-TTTTattgt
gi|4 : attcacAAACAA----A-GTGAC-AAACATA-AGTCGAATA-A---AGTGCTT------TTATTTCAAGGAAT---------------AA-----TTCATACGCC----GTT-C-AAAAACTATAACGGATATTTTAATACGACATACAC-----ATAAATCTAGGAAAG-------GTATTGCGTAACAAAATAATCACAAAATTAAAACTATTGAGTCAGCCGTTCCGGAATAAGACC-------CTTTCACATCGCCAATAT-C-----G-G-CTAAACAGTTTAGTCGTAAATAAAGTGGT-ATA----TTTAA-CTATTTTGACAT--TTTAAGAATAGAAC-TGCTCAAAACAACCCTAGCCTG-G---TATGGCAA------CA---TGTTTCAAGGTAAGTCAACAACACAGCATTTCTGTCATGCTCACTTATGTTTATCAATATCATCT-GAAACAGCTGAT--GAGC-----------TCCACAAC--T------------TG--TTTGCTGAACAATGTCTGCCATTTTCC---AGT----CA------A--T---AT-GTAG--------A------GT-ATATACGAAGCGCACTGATTGGT--CCT------TCCTTG---------GG---GTGT--TTAAAGACCAATCAGCGCGCTTCATACAT--A-------AT--TCA---GAAATCAAACAAAAAATGGCAGACTATGT--AACATcc
gi|5 : GGATTAATGGACCTTGGTTGGTCTCT-----C---CCTACCACACCCA------CCCCCAC----AC---CCCAA-T-TATTT---------TT-T----TC-----A-----A---TTTtt
gi|5 : TTGAGTA-A---AGGCCTT------TCACTTCAACGAACGGCCCATATACCCCCAACTGTCTTTAGACACCCGCTGTGGC-AAAAACTATTAAAACTATTCTTACACGGCATACAC-----AGAAAGCTAGAGGAG-------GTATTACGTGACAAAATAAGCCTAACATTAGAACTATCGAGCCAGCCGTTCAGGAATAAGACC-------CTTTCAAGTCGCAACT-T-CA--GCG-G-CTAAATCGCTTAAACGACAATAAAGTGGC-ATATTATTTT-A-CGGGTT----AA--TACAGGACTAAAAC-GGCTCGAAACAACTGTAGCCTGTGAT-TATA---A------CA---CATTTTAAGGTAAGTCAACATCAAATTAATTCTTTCGTGCTCACTTACTTATTTCATTATCGCCT-AGAACAGCTGATCAatatatatatttgagtaaaggcctttcacttcaacgaacggcccatatacccccaactgtctttagacacccgctgtggcaaaaactattaaaactattcttacacggcatacacagaaagctagaggaggtattacgtgacaaaataagcctaacattagaactatcgagccagccgttcaggaataagaccctttcaagtcgcaacttcagcggctaaatcgcttaaacgacaataaagtggcatattattttacgggttaatacaggactaaaacggctcgaaacaactgtagcctgtgattataacacattttaaggtaagtcaacatcaaattaattctttcgtgctcacttacttatttcattatcgcctagaacagctgatcatcggccattccagaataacga
gi|6 : ggattaatggaccttggttggtctctccctaccacacccacccccacaccccaattatttttttcaatttatatatatatTTAA-AGGGTT----AT--TACAATATTAATTC-GGCTTAACACAA-------CTG-G---TATGACAA------CA---TGTTCCAAGGAAAGTCAGCAATAAtcggccattccagaataacga
gi|6 : AACACAGCTGTAACCTG-T---TATG---A------CAATTTGTTTCAAGGAATGCCAACAACAGATGAACCCTTTCATGTTGACTCACTTATTTCAGTATCATCT-AAAACAGCTTATGAGACCAT-TTTCCTAATCCATAA----------------TGAACATGTTGAACAAAGTCTGTTATTTTCT---ATT----TA------AATT---CT-GT----------A------TT-ATGCACGAATGAAGTTGATTGGTGCCCC------GCCTCG---------AAGA----------AGGACCAATCAGTGTGCTTGATACAT-----------T--TGA---AACAT-----Ataagtagattatgtttcaaatgtatcaagcacactgattggtccttcttcgaggcggggcaccaatcaacttcattcgtgcataatacagaatttaaatagaaaataacagactttgttcaacatgttcattatggattaggaaaatggtctcataagctgttttagatgatactgaaataagtgagtcaacatgaaagggttcatctgttgttggcattccttgaaacaaattgtcataacaggttacagctgtgtttttcgacaagaactcattttacatggatggaatagaaaatgtgaaaagtaaacaattatataaacg
gi|7 : ttaaagggttattacaatattaattcggcttaacacaactggtatgacaacatgttccaaggaaagtcagcaataataagtagatTAACGACTATTCTAAAACG-----C-C-----AGAAGGCTAGACGAG-------GTATCACGTGACAAAGTAAGCACAACACCAGAATAATAGAGCCAAACGTTCAAGAAAAATACG-------TTTTCAAATCGTCCAT-T-AA--G-G-GACTAAAACGTTTAGTCGACAATAA--TGGT-A----ATTTTCA-CGGGTT----AT--TCCAATGCTACAAC-GGTTTGAAAGAAATGTAGCCTG-G---TATG---A------CAACATGTTTCAAAGTAAGTTAACAACATTTGAACTCTTTCATGCTCACTTACTTATATCAATGTCGCCT-GGAACAGCTGATTAGAGCAA-ATTCCTGATCCGCAAT--A------------TG--TTTGCTG-A-----------CTGTTC----ATTGACATGTCTAGCAAAT---CA-GTAG--------A------TT-ATGTATCAAGCCCGCTTATTGGTA-ATT------TCCTtttcgacaagaactcattttacatggatggaatagaaaatgtgaaaagtaaacaattatataaacg
gi|8 : AGGCCGGATTAATGGACCTTGGTTGATCCCT-----C---CCTACCACCCTTA------CCCC-------ATACCCCAAA-T-TTTTT---------TT-G----TC-----A-----A---TTTT-TT-----------------TGTC-AA-----------ATC--TTTGTTCA--ATC--CA-------T-C----CA---AAAAATA-AA---A--GTAAAATAAATGATA-GTGAG-AAACATATATTTGAGTA-A---AGGCCTT------TCACTTCAACGAACGGCCCATATACCCC-AACTGTCTTTACACACCGGCTGTG-C-AAAAACTATTAAGATTATTCTTACACGGCATGCAC-----AGAAAGCTAGAGGAG-------GTATTACGTGACAAAATAAGCCTAACATCAGAACTATCGAGCCAGCCGTTCttggatgttt
gi|9 : AGACAGGAATAACGGAC----ATTGGTCCC------C---C-----------A------CCCC-------TT---C--ATAT-TTTTT---------TT-T----TC-----AGAAATA---TTTT-TT-----------------T-a
gi|9 : cacAACAA----A-GTTTA-AAACATA-AGTTGAGTA-A---AACCTTT------TTACTACTAGCAACAGTCCACATACCCCCAACTGTTTTCTGATACCCGCTGTG-T-AAAAACTATAACGAATATatatatatatatttttttcaatctgtgttcaatccacaggacgtatcttacttatcttttggatagctatcgatataaagtaaattaactacatatagctatccaaaaggtatagtaagatagggcctgtggttcaatcaacaaagtttaaaacataagttgagtaaaacctttttactactagcaacagtccacatacccccaactgttttctgatacccgctgtgtaaaaactataacgaatat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): CAAAGGCAAGATTAACGAACCTTGAGCGTTCTCATCCTCTCTTTTTTTATTTATTTATATTTTTTTATTGTCAAATCTATGTTCAAATCAGTCAAAATGCCCCTTT
Alignments
lowQualScore : 33333333333333333333333333333 11111111111111111111 111111111 11111111111 22222222222222222 11111111111 22222222222222 22222222222 1111 11111 1111111 1111111 1111111 1111 11111 2222222222 111 2222222222222222 88888888888888888888888888888888888888888888888888888888888888888 11 111111 55555555555555555555555 555555555555555555555555555555
lowQualScore : 2 77777777777777777777777777777 99999999999999999999 000000000 2 5555 33333333333 444 5 33333333333333333 2 2 33333333333 44 4 555 55 11111111111111 666 4 33333333333 3333 3 3 4444 3 555 999999 3 1 44 3 2 00000 0 3333333 2 1 1 0 6666666 1 5 3333333 4 4 11 3 0 5 4444 0 4 7777 55 0 3 0 0 0 00000 6666666666 777 1 1 0 0 3 1 4 4 4 0 0 5555555555555555 55 0 00000000000000000000000000000000000000000000000000000000000000000 5 11 444444 88888888888888888888888 1 888888888888888888888888888888 1 0 22 22 1 1 1
lowQualScore : . ............................. .................... ......... . .... ........... ... . ................. . . ........... .. . ... .. .............. ... . ........... .... . . .... . ... ...... . . .. . . ..... . ....... . . . . ....... . . ....... . . .. . . . .... . . .... .. . . . . . ..... .......... ... . . . . . . . . . . . ................ .. . ................................................................. . .. ...... ....................... . .............................. . . .. .. . . .
lowQualScore : 1 00000000000000000000000000000 88888888888888888888 000000000 5 3333 00000000000 111 0 88888888888888888 5 7 66666666666 66 4 666 00 11111111111111 444 0 88888888888 8888 1 1 9999 1 444 666666 2 8 22 6 0 00000 7 0000000 3 0 9 2 2222222 4 0 9999999 4 4 22 6 5 7 9999 9 0 7777 00 1 6 4 4 2 66666 1111111111 555 0 3 3 7 3 0 2 1 0 8 5 3333333333333333 55 7 00000000000000000000000000000000000000000000000000000000000000000 0 99 444444 88888888888888888888888 0 000000000000000000000000000000 4 8 22 00 2 0 0
consensus : AGGCAGGAGTAACGGACCTTGGTTGGTCCCT-----C---C-----------A------CCCC-------AT---CCGAT-T-TTTTT---------TT-T----TC-----A-----A---TTTT-TT-----------------T-TC-AA-----------TCC--ATCGTATA--NAA--CA-------A-A----CA---AACAA-A-AA---A--GTAAAAAAAA----A-GTGAC-AAACATA-AGTTGAGTA-A---AGGCCTT------TTACTTCAAGGAACGGCCCACATACCCCCAACTGTCTTCAGACACCCGCTGTG-C-AAAAACTATAACGAATATTCTTATACGGCATACAC-----AGAAAGCTAGAGGAG-------GTATTACGTGACAAAATAAGCCCAACANCAGAAATATTGAGCCAGCCGTTCCTGAATAAGACC-------CTTTCAAATCGCCCAT-T-NA--G-G-G-CTAAANAGTTTAGTCGTAAATAAAGTGGC-ACA-AATTTTAA-CGGGTT----AT--TACAAGACTAAAAC-GGCTCAACACAACTGTAGCCTG-G---TATG---A------CA---TGTTTCAAGGNAAGTCAACAACAAATGAACTCTTTCATGCTCACTTACTTATTTCAATATCGTCT-AGAACAGCTNATNAGAGCAA-TTTCCTAATCCGCAAC--T------------TG--TTTGCTGAA-----------ATTTTCT---ATT----TG------AATT---CT-GT----------A------TT-ATGTATCAAGCGCGCTGATTGGT--CCT------TCCTCG---------GGGAAGTGTA-TTTAGGACCAATCAGCGCGCTTNATACAT--A-------AT--TGA---NAAAT-----AGAAAATGGCAGACTTTGTTCAACATATNNGTTACGGANTAGAAAACTGNTCTGATA
Reference ( family-1098 ) : AGGCAGGAGTAACGGACCTTGGTTGGTCCCT-----C---C-----------A------CCCC-------AT---CCGAT-T-TTTTT---------TT-T----TC-----A-----A---TTTT-TT-----------------T-TC-AA-----------TCC--ATCGTATA--NAA--CA-------A-A----CA---AACAA-A-AA---A--GTAAAAAAAA----A-GTGAC-AAACATA-AGTTGAGTA-A---AGGCCTT------TTACTTCAAGGAACGGCCCACATACCCCCAACTGTCTTCAGACACCCGCTGTG-C-AAAAACTATAACGAATATTCTTATACGGCATACAC-----AGAAAGCTAGAGGAG-------GTATTACGTGACAAAATAAGCCCAACANCAGAAATATTGAGCCAGCCGTTCCTGAATAAGACC-------CTTTCAAATCGCCCAT-T-NA--G-G-G-CTAAANAGTTTAGTCGTAAATAAAGTGGC-ACA-AATTTTAA-CGGGTT----AT--TACAAGACTAAAAC-GGCTCAACACAACTGTAGCCTG-G---TATG---A------CA---TGTTTCAAGGNAAGTCAACAACAAATGAACTCTTTCATGCTCACTTACTTATTTCAATATCGTCT-AGAACAGCTNATNAGAGCAA-TTTCCTAATCCGCAAC--T------------TG--TTTGCTGAA-----------ATTTTCT---ATT----TG------AATT---CT-GT----------A------TT-ATGTATCAAGCGCGCTGATTGGT--CCT------TCCTCG---------GGGAAGTGTA-TTTAGGACCAATCAGCGCGCTTNATACAT--A-------AT--TGA---NAAAT-----AGAAAATGGCAGACTTTGTTCAACATATNNGTTACGGANTAGAAAACTGNTCTGATA
gi|1 : AGGCAGGAGTAACGGACCTTGGTTAGTTCCT-----C---A-----------A------CCCC-------AT---CTGAC-TGTTTTT---------TT-T----TC-----A-----A---TTCT-TT-----------------T-TC-GG-----------TCC--ATCGTATA--AAA--CA-------A-A----CA---AACAA-ACAA---A--GCAAAAAAAA----A-GTGAC-AAACATA-AAATGAATA-A---AGGCTGT------ATACTTCAAGACACAGCCCACATACCACCAGCTGTCTTCAGACACCCGCTGTG-C-AAAAACTATAACGAATATTCTTATACAGCATACACTACTAAGGAATTTTCAATAGTTCCTTGGTATAACGTAATAAAATAAGCCTAACCACAGAAAAACTGAGTCAGCCGTTCCTGA-TAAGACC-------CTTTCAAATCGCCTAT-T-TG--G-A-G-CTAATAAATAAAGTCGTAACTAAAGTGGT-ACA-ACTTTTAA-CGGATT----AT--TACAAGACTAAACC-GGCCCAACACAACTGTAAGTTG-A---TATG---T------TA---TGTTTCAAGGAAAGTCAACAACAAATGAA-TCTTGCATGCTCACTTACTAATTTCAATATCATCTAAAAACAGCTCATGAGACCAA-TTTCCTAATCCATAAC--A------------AA--CATGATGAA-----------ATTTTCT---ATT----TG------AATT---CT-GT----------A------TT-ATGTATCAAGGGCACTGACTGGT--CCT------TGCTCG---------GGAAAGTGTATTTTAGGACCAATCAGCGCACTTCATTTAT--A-------ATTATGACTTGAAAT-----AGAAAATGGCAGACTTTGTTTAACATCTTTGTTACGGATTAGAACACTGGTGTCATA
gi|10 : GTCAACAACAAATGAACTCGTTCATTCTCACTTACTTATTTCAATGTCATCT-TAAACAGATCACAAAACCAA-TTTTCTAATCCATAAT--T------------TG--CTT-----------------ATTGTCA---AT--------------ATA---CT-GC----------AATT---TT-ACGTCTCAAGTGCACTGATTGGT--CCT------TCCCCG---------GAGGAGTGTATTTTAGGACCAATCAGCGCACTTCATGCA---------------TGA---C--AT-----AGAAAATGGCAGACTTTGTTCAAAATGTTTGTTACGGATTgaccatattt
gi|11 : -----A---TTTA-TG-----------------T-TT-AA-----------CCC--ATCGTATA--TAA--CA-------A-A----CA---CACAA-A-AA------GTGGGGAAAA----ACGTGAC-AAACATA-AGTTGAGTA-A---AAGTCGT------TTA---CAAG---------ACTCAGCCCTAACTGTCTTCAGACACCCGCTGTG-CAAAAAACTATTAAGAGTATTCTTATACGGCATACAC-----A------------------------------GACATAA---GCCCAACAACAGAAATACTAAGCCAGCCGTTCCTGAACAAGACT-------CTTTCAAATCGCTAAT-T-AA--GAA-A-CTAAACAGTTTAGTCGTAAAaatagtaataaacaagttatattacacataaaaactgttataa
gi|12 : T----AA--TACAGGACTAAAAC-GGTTCGAAACAACTGTAGCCTG-T---GATG---ATAA---CA---CGTTTTAAGGTAAGTCAACATCAAATTTTTTCTTTCGTGCTCACTT--------CATTATCGCAT-AGAACAGCTGATCAGAGCAA-TTTTCTACTTCGCAAC--T------------TG--TTTGCTGAACG---------ATGTCCG---CCC----TG--------TT---CCAGCCAATAAAAAGA------TTGATGTATCAAGCGTGCTGATTGGT--CCT------gt
gi|13 : aACTGTCTTCAGCCACCCGCTGTG-C-AAAAACTATAACGAATATTCCTTTACGTCATACAC-----AGAACGCTGAAGGAG-------GTAATACTTGATAGAATAAGCC--ATATT-GACATATTGAGCCAGCCGTTCCTGCATATGACCCTAAAGGCTTTCAAATCATCCAT-TAAA--G-G-G-TTAaaatacccccccccccccccacacacacacacacacaca
gi|13 : tctTTAA-AGGGTT----AT--TACAATATTAATTC-GGCTTAACACAA-------CTG-G---TATGACAA------CA---TGTTCCAAGGAAAGTCAGCAAttacaatattaattcggcttaacacaactggtatgacaacatgttccaaggaaagtcagcaat
gi|14 : tctactgtcttcagccacccgctgtgcaaaaactataacgaatattcctttacgtcatacacagaacgctgaaggaggtaatacttgatagaataagccatattgacatattgagccagccgttcctgcatatgaccctaaaggctttcaaatcatcca-G-A-CTAGACAGTT-AGT----AA-AAAGTGGTTGTG-AATTTTAAACGGATT----ATATTACACGATTATAAC-GACTTAAAACAACTCTTGTCTG-A---TATG---A------CAGCATGTTTCAAGACAAATCAACAATAAATGAACTCTTTCATGCT----TACTTCTTTCAATATCATCA-AGTACAGCTTATCAGAGCAG-TTTCCTATTCCACAAA--T------------TA--TTTGCTGAA-----------t
gi|14 : cgctATGGCAGACTATGTTCAGCAAATAATTTGTGGAATAGGAAACTGCTCTGATAcatagtctgccatgt
gi|15 : cgctgactagacagttagtaaaaagtggttgtgaattttaaacggattatattacacgattataacgacttaaaacaactcttgtctgatatgacagcatgtttcaagacaaatcaacaataaatgaactctttcatgcttacttctttcaatatcatcaagtacagctAGGCAGGATTAATGAACCTTGGATGGTCCCT-----CTACC-----------A------CCCCCTCCCTCATACCCCAAT-T-TTTTTGTCAAATGTTT-T----TTGGTCAA-----A---TCTA-TG-----------------T-TC-AA-----------TCC--ATC---CA--AAA--CACCCATTTA-A----CA---AA--A-A-AA---A--ATAAAAAAAAT---A-G-----AAACAT----TTGAGTA-A---AGGCCTT------TCACTTCAACGAACGGCCCATATGCCCCCAACTGTCTgt
gi|16 : acGCATGAGTAACGGACCTTGGTTAGTTCCC-----C---T-----------A------TCTC-------AT---TTGA-----TTTT---------TT-T----TC-----A-----A---TTTT-GT-----------------T-TC--------------TCCAAAT-GTATGTTCAGTTCA-------A-T----CT---ATCAA-A-GATCTA--TTAAACAAAG----A--TGCCAAAACATA---TTAAGTATATTTATGTATTTTATTGTTACTTCAAGGCATAGCTCACATACCCACAACTG
gi|17 : acatGTTAGTCTCC-----C---C-----------A------CCCC-------TT---CTGAT-T-TTTTT---------TTCT----TC-----A-----A---TTTT-TT-----------------T-T--AA-----------TCC--ATTGTATA--TAA--CA-------ATA----AA---AAC
gi|17 : gcagttaaaaatACTTCAAGGATTAGCCCACATACCCTCAACTGTCTTCAGACACTC-----A-C-AAAAATTAGAATGAATGTTCTTATATGGTATACAttcaaggattagcccacataccctcaactgtcttcagacactcacaaaaattagaatgaatgttcttatatggtatacatgtacaatgaaagga
gi|18 : gcagttaaaaatgttagtctccccaccccttctgatttttttttcttcaattttttttaatccattgtatataacaataaaaAAGCAGGATAAATGGACCTTGGTTGGTCCCTCTCTAC---C-----------ACCCCCCCCCC-------ATACCCCAA----TTTCT---------TT-T----TC-----A-----T---TTTT-TTTTTTTGTCAAATCTATGT-TC-AA-----------TCC--ATC---CA--AAA--CA-------C-C----CATTTAACAA-------------AAAAAAAT----A-GTGAG-AAACATA-tgtacaatgaaagga
gi|19 : acAAGGAACGGTCCACTTACCACCGACTGTCTTCAGACAT-------------AAACGATAAAGGATATTCATAAACACTATACAC-----AGAAAGCTAGCGGAA-------GTATTACGTGACAAAATAAGCACAACtatt
gi|19 : AA-CGGGTT----AT--TATAAGACTAgggttattataagactattatgcc
gi|2 : aaggaacggtccacttaccaccgactgtcttcagacataaacgataaaggatattcataaacactatacacagaaagctagcggaagtattacgtgacaaaataagcacGGCAGTAGCAATGAACCATAGTCAGTTCCC-----C---C-----------A------TTCT-------AT---CTGAT-T-TTTTT---------TT-TAAAATCTTAA-A-----A---TTTA-TG-----------------T-TC-AA-----------TCC--ATCGTATA--TAA--CA-------A-AGAAACG---AACAA-A-AA---ATGATAATAATAA----A-GTGAC-AAACATC-AGTTGAGAA-A---AGGCATT------TTACTTCAAAGCACAGCCCACATACCACCAACTGTCTTCACACACCCGCTGT-----------ATAACGAATGTTCTGATACGGCATACAC-----AGACAACCAGAGGAG-------AAATCACGTGACAAAATAAGCCGAACGACAGAAATATTGAGCCAACCGTTCATGAATAAGACC-------CTTTCAAATCGCCCTT-T-AATGG-A-G-CTAAAAAGTTAAGTCGTAAATAAAGTTGC-ACA-AATATTTA-CGGATT----AT--TACAAGAC-AGAACTGACTCAACACAACTGTAGTCTG-GTACTACA---A------CA---TTTTTCAAGGAGAGTCAACAACAAATGAACTCTTTCATGCTCACTTACCTATTTAAATATCATCT-AAAACAGCTCATGAGA-CAGTTTTCCTAAATCGTAACAATCAAATTGAACAATG--TCTCCC--------------ATTTTCT---ATT----TG------AATT---TT-GT----------A------TT-GTACATGAAGCACGCTGATTGGT--CCTAAAATACCCCCACCCCACCCCGAGAA-T--------GGACCAATCAGTGCGCTTAATACAT--A-------AT--ttatgcc
gi|20 : TATCATCT-AGAACAGCCGATGAGAGAAA-TTTCCATATCCATAAC--T------------TG--TTAACTGAAT----------GTTTACTGCCATT----T--------ACTAGCCA-AT----------AAGGAGTTT-ACGTACCAAACGCACCGATTGGT--CCT------TCCTTG---------GGTA--TGTA-TT
gi|21 : AGCCAGAAATAACGGGCTGTTGTTATTCTCT-----C---T-----------A------TCCC-------GT---C---------TTT---------TT-T----TC-----------A---CTTT-TT-----------------T-TC-AA-----------
gi|22 : gaccacAGGCAGGATTAGTTGACCTTGGTTGGTCCCTCCCTAC---C-----------A------CTCC-------AA---CCGaattttatcaaaattttctttaaaattttttttcaattctatgttcaatccatcct
gi|23 : acA---AACAA-AGAA---A--G--AAGAAAA----A-GTGAC-CAACATA-AGTTGAGTA-A---AGATCTT------TTACTTCAAGGAAcccagttacaaatttgtggttatatattttattttaaaattaaatatgcgcagatcctctcaatacac
gi|24 : aattttatttggtcaaatctatgcccaaaattattgaaagtaccaacttattACTTATATCATTATCGCCT-AGAACAGCTGATCAGAACAA-TTTTCTACTCCGAAAC--T------------TG--TTTGCTGAA-----------
gi|24 : CGCTTGATACATCAATCTTTTTAT--TGG---C---C-----GGAACATGGTGGACATCGTTCAGCAAACAAGTTTCGGAGTAGAAAATTGTTCTGATcgatgtccaccatgttccggccaataaaaagattgatgtatcaagcg
gi|25 : acttatatcattatcgcctagaacagctgAAAAACT--A-GTAAC-AAACATA-AATTGAGTA-A---AGGCCTT------CTACGTCAAGGAAAGGC
gi|27 : ttttttttctcacggaccctgttttgtcaaatttaatccatgttcagtccattACAAGACTAAAAC-GGCTTAACACAACTATAGCCTG-G---TATG---A------CA---TGTTTCAATGTAAGTCAACAACAAATGAACTCTTTCATATACATTT-CTT
gi|28 : tacttcaaggaagGGTTAGTCCCC-----C---T-----------A------CCTC-------AT---CTGAT-T-TTAGT---------TT-T-----C-----A-----G---TTTT-TTTCTTC------------T-TC-AGATCTGTGTTGTTCC--ATCATATA--TAA--TA-------
gi|29 : TTT---------TT-T----TC-----A-----A---TTCTATG-----------------T-TC-AA-----------TCC--ATCCTATA--TAA--CA-------A-A----CA---AACAG-A-CA------TTAAAATCC-------GTAAC-AAACAT---TTTGAACA-A---AGttagggtcaaaacat
gi|3 : AGGCAGGAGAAACGGACTTTGGTTGGTCCTC-----C---T-----------T------CCCA-------AT---CAGA-----TTAT---------AT-T----TC-----A-----AAACTTAT-TT-----------------T-TC-tctg
gi|3 : cT-T-TTCTT---------TT-T----T----------------TTTT-TT-----------------T-TCAAA-----------TTC--A-CATATA--ttgtttttttcttttttttttttttcaaattcacatatattttcaattatatgttcaatccatcatacacattacacgaagaaagaaacaaaaatggtaacaaacataaagctttttacttcgaagcacagcccatataccccaactgtcttcagacaaccgctttgcaaaaactatgacgaatattcttatacgaaatgcttagccaggtggtcgatgtattacgtgacaaaataagcccaacaacagaaatattgagccaaccattcctgaataagaccctttcaaatcgcccatttaggtgctaaaatgtttagtcgtaaataaagtgacacacattttaacggattattgcaagactaaaccggctcaacacaactgtagtctggtatgacaacgtcatgtttcaaggaaagtcaacaacaaatgaactctttcatgctcactttcttattttaatatcatctaaaacagctcataaaata
gi|3 : caggcaggagaaacggactttggttggtcctccttcccaatcagattatatttcaaaacttatttttcttgttt---------TT-T----TC-----A-----A---TTATATG-----------------T-TC-AA-----------TCC--ATCATACA--CAT--TA-------C-A----CG---AAGAA-A-GA---A----ACAAAAAT----G-GTAAC-AAACATA-AA--------------GCTTT------TTACTTCGAAGCACAGCCCATATACCCC-AACTGTCTTCAGACAACCGCTTTG-C-AAAAACTATGACGAATATTCTTATACGAAATGCTT-----AGCCAGGTGGTCGAT-------GTATTACGTGACAAAATAAGCCCAACAACAGAAATATTGAGCCAACCATTCCTGAATAAGACC-------CTTTCAAATCGCCCAT-T-TA--G-GTG-CTAAAATGTTTAGTCGTAAATAAAGTGAC-ACA-CATTTTAA-CGGATT----AT--TGCAAGACTAAACC-GGCTCAACACAACTGTAGTCTG-G---TATG---ACAACGTCA---TGTTTCAAGGAAAGTCAACAACAAATGAACTCTTTCATGCTCACTTTCTTATTTTAATATCATCT-AAAACAGCTCATAAAAttttcaattatatgttcaatccatcatacacattacacgaagaaagaaacaaaaatggtaacaaacataaagctttttacttcgaagcacagcccatataccccaactgtcttcagacaaccgctttgcaaaaactatgacgaatattcttatacgaaatgcttagccaggtggtcgatgtattacgtgacaaaataagcccaacaacagaaatattgagccaaccattcctgaataagaccctttcaaatcgcccatttaggtgctaaaatgtttagtcgtaaataaagtgacacacattttaacggattattgcaagactaaaccggctcaacacaactgtagtctggtatgacaacgtcatgtttcaaggaaagtcaacaacaaatgaactctttcatgctcactttcttattttaatatcatctaaaacagctcataaaata
gi|30 : caggcaggagaaacggactttggttggtcctccttcccaatcagattatatttcaaaacttatttttcttgtttttttcttttttttttttttcaaattcacatataAGACAGAAGTAACGGACCTTGGCTAGTACCT---------T-----------A------CCCC-------AT---CTGA-----CTTT---------TT-T----CC-----A-----A---TTGT-TT-----------------T-TC-AA-----------ta
gi|31 : ccatAGGCAGGCGTAACGGACATTAGTTAGTACCG-----C---T-----------G------CCCC-------GT---CTGAT-T-TTTTattgt
gi|4 : attcacAAACAA----A-GTGAC-AAACATA-AGTCGAATA-A---AGTGCTT------TTATTTCAAGGAAT---------------AA-----TTCATACGCC----GTT-C-AAAAACTATAACGGATATTTTAATACGACATACAC-----ATAAATCTAGGAAAG-------GTATTGCGTAACAAAATAATCACAAAATTAAAACTATTGAGTCAGCCGTTCCGGAATAAGACC-------CTTTCACATCGCCAATAT-C-----G-G-CTAAACAGTTTAGTCGTAAATAAAGTGGT-ATA----TTTAA-CTATTTTGACAT--TTTAAGAATAGAAC-TGCTCAAAACAACCCTAGCCTG-G---TATGGCAA------CA---TGTTTCAAGGTAAGTCAACAACACAGCATTTCTGTCATGCTCACTTATGTTTATCAATATCATCT-GAAACAGCTGAT--GAGC-----------TCCACAAC--T------------TG--TTTGCTGAACAATGTCTGCCATTTTCC---AGT----CA------A--T---AT-GTAG--------A------GT-ATATACGAAGCGCACTGATTGGT--CCT------TCCTTG---------GG---GTGT--TTAAAGACCAATCAGCGCGCTTCATACAT--A-------AT--TCA---GAAATCAAACAAAAAATGGCAGACTATGT--AACATcc
gi|5 : GGATTAATGGACCTTGGTTGGTCTCT-----C---CCTACCACACCCA------CCCCCAC----AC---CCCAA-T-TATTT---------TT-T----TC-----A-----A---TTTtt
gi|5 : TTGAGTA-A---AGGCCTT------TCACTTCAACGAACGGCCCATATACCCCCAACTGTCTTTAGACACCCGCTGTGGC-AAAAACTATTAAAACTATTCTTACACGGCATACAC-----AGAAAGCTAGAGGAG-------GTATTACGTGACAAAATAAGCCTAACATTAGAACTATCGAGCCAGCCGTTCAGGAATAAGACC-------CTTTCAAGTCGCAACT-T-CA--GCG-G-CTAAATCGCTTAAACGACAATAAAGTGGC-ATATTATTTT-A-CGGGTT----AA--TACAGGACTAAAAC-GGCTCGAAACAACTGTAGCCTGTGAT-TATA---A------CA---CATTTTAAGGTAAGTCAACATCAAATTAATTCTTTCGTGCTCACTTACTTATTTCATTATCGCCT-AGAACAGCTGATCAatatatatatttgagtaaaggcctttcacttcaacgaacggcccatatacccccaactgtctttagacacccgctgtggcaaaaactattaaaactattcttacacggcatacacagaaagctagaggaggtattacgtgacaaaataagcctaacattagaactatcgagccagccgttcaggaataagaccctttcaagtcgcaacttcagcggctaaatcgcttaaacgacaataaagtggcatattattttacgggttaatacaggactaaaacggctcgaaacaactgtagcctgtgattataacacattttaaggtaagtcaacatcaaattaattctttcgtgctcacttacttatttcattatcgcctagaacagctgatcatcggccattccagaataacga
gi|6 : ggattaatggaccttggttggtctctccctaccacacccacccccacaccccaattatttttttcaatttatatatatatTTAA-AGGGTT----AT--TACAATATTAATTC-GGCTTAACACAA-------CTG-G---TATGACAA------CA---TGTTCCAAGGAAAGTCAGCAATAAtcggccattccagaataacga
gi|6 : AACACAGCTGTAACCTG-T---TATG---A------CAATTTGTTTCAAGGAATGCCAACAACAGATGAACCCTTTCATGTTGACTCACTTATTTCAGTATCATCT-AAAACAGCTTATGAGACCAT-TTTCCTAATCCATAA----------------TGAACATGTTGAACAAAGTCTGTTATTTTCT---ATT----TA------AATT---CT-GT----------A------TT-ATGCACGAATGAAGTTGATTGGTGCCCC------GCCTCG---------AAGA----------AGGACCAATCAGTGTGCTTGATACAT-----------T--TGA---AACAT-----Ataagtagattatgtttcaaatgtatcaagcacactgattggtccttcttcgaggcggggcaccaatcaacttcattcgtgcataatacagaatttaaatagaaaataacagactttgttcaacatgttcattatggattaggaaaatggtctcataagctgttttagatgatactgaaataagtgagtcaacatgaaagggttcatctgttgttggcattccttgaaacaaattgtcataacaggttacagctgtgtttttcgacaagaactcattttacatggatggaatagaaaatgtgaaaagtaaacaattatataaacg
gi|7 : ttaaagggttattacaatattaattcggcttaacacaactggtatgacaacatgttccaaggaaagtcagcaataataagtagatTAACGACTATTCTAAAACG-----C-C-----AGAAGGCTAGACGAG-------GTATCACGTGACAAAGTAAGCACAACACCAGAATAATAGAGCCAAACGTTCAAGAAAAATACG-------TTTTCAAATCGTCCAT-T-AA--G-G-GACTAAAACGTTTAGTCGACAATAA--TGGT-A----ATTTTCA-CGGGTT----AT--TCCAATGCTACAAC-GGTTTGAAAGAAATGTAGCCTG-G---TATG---A------CAACATGTTTCAAAGTAAGTTAACAACATTTGAACTCTTTCATGCTCACTTACTTATATCAATGTCGCCT-GGAACAGCTGATTAGAGCAA-ATTCCTGATCCGCAAT--A------------TG--TTTGCTG-A-----------CTGTTC----ATTGACATGTCTAGCAAAT---CA-GTAG--------A------TT-ATGTATCAAGCCCGCTTATTGGTA-ATT------TCCTtttcgacaagaactcattttacatggatggaatagaaaatgtgaaaagtaaacaattatataaacg
gi|8 : AGGCCGGATTAATGGACCTTGGTTGATCCCT-----C---CCTACCACCCTTA------CCCC-------ATACCCCAAA-T-TTTTT---------TT-G----TC-----A-----A---TTTT-TT-----------------TGTC-AA-----------ATC--TTTGTTCA--ATC--CA-------T-C----CA---AAAAATA-AA---A--GTAAAATAAATGATA-GTGAG-AAACATATATTTGAGTA-A---AGGCCTT------TCACTTCAACGAACGGCCCATATACCCC-AACTGTCTTTACACACCGGCTGTG-C-AAAAACTATTAAGATTATTCTTACACGGCATGCAC-----AGAAAGCTAGAGGAG-------GTATTACGTGACAAAATAAGCCTAACATCAGAACTATCGAGCCAGCCGTTCttggatgttt
gi|9 : AGACAGGAATAACGGAC----ATTGGTCCC------C---C-----------A------CCCC-------TT---C--ATAT-TTTTT---------TT-T----TC-----AGAAATA---TTTT-TT-----------------T-a
gi|9 : cacAACAA----A-GTTTA-AAACATA-AGTTGAGTA-A---AACCTTT------TTACTACTAGCAACAGTCCACATACCCCCAACTGTTTTCTGATACCCGCTGTG-T-AAAAACTATAACGAATATatatatatatatttttttcaatctgtgttcaatccacaggacgtatcttacttatcttttggatagctatcgatataaagtaaattaactacatatagctatccaaaaggtatagtaagatagggcctgtggttcaatcaacaaagtttaaaacataagttgagtaaaacctttttactactagcaacagtccacatacccccaactgttttctgatacccgctgtgtaaaaactataacgaatat
blockSeqs : T TCTCTACCACCCCCC CTCCCTCATACCCCAATT GTCAAATGT C AAAA GGTCAA AAC A TTTTTGTCAAATCTATG G A ATCTGTGTTGT AA G TTC TT CCCATTTAA TTT T GATCTATT TGAT C A ATAT T TTT TTATTG G T GG A G . . C A A CTAAAGG A A AATGG T A CA T T TATT A TGAC AT T GTAC ACAACGT GCA T A . C A C T CAATCAAATTGAACAA AA CGATGTCCGCCCTGTTCCAGCCAATAAAAAGA G GC AAAATA CCCCACCCCGAGAAT C CAATCTTTTTATTGGCC T TG TT A T C
blockSeqs : G TCCCTACCACACCCA CACACCCCAAT . . . AGAAAT . A TCTTC . . . . G T . AAGAAA . . AAATGAT CT . . AAG . . . A C G . T . . C T A . C . AAGA . . CA A . TGA . . . . TGAT ATAA ATT A A . G C G . TT . TGTTTACTGCCATTTACTAGCCAATAAGGAGT . A . GAGGAGTGTATTTT A AATTCAGAAATCAAAC A AA AA G A T
blockSeqs : T TCCCTACCACCCTTA ATACCCCAAAT . . . TTAAA . . . . . . . G A . ATA . . AAAAT T . . CAG . . . A C G . G . . G A A . C . AAAG . . AA T . CAA . . . . T ACAA ACA C A . T C G . CT . CAATGTCTGCCATTTTCCAGTCAATATGTAGA . . . GGGTGTTTA G TTGAAACAT T AA AA T G
blockSeqs : G TCCCTACCA ATACCCCAA . . . A . . . . . . . G T . AA . . GAAAG . . . AAG . . . G C A . C . . C A A . C . CAGC . . AT T . CAC . . . . G GCAA . A A . C G G . AT . CAAAGTCTGTTATTTTCTATTTAAATTCTGTA . . . AAGA C TGACAT A
blockSeqs : A TCTACCA TTCTGATT . . . A . . . . . . . A A . AT . . AAAGT . . . AAA . . . A C G . G . . C T C . A . TAG . . CA T . TA . . . . A ACAA . T T . G G A . CT . CTGTTCATTGACATGTCTAGCAAATCAGTAGA . . . G
blockSeqs : T CCTA ATCTGATT . . . A . . . . . . . C T . CC . . AAGT . . . AAA . . . G C T . A . . T T C . A . AAG . . TC T . . . . . . G A . A A . G C G . CT . ATTTTCTATTTGAATTTTGTA . . .
blockSeqs : G CCCA ATCTGATT . . . A . . . . . . . A T . AA . . CATT . . . AAG . . . A C G . A . . C C T . C . C . . AC . . . . . G A . T A . C A C . CT . ATTGTCAATATACTGCAATT . . .
blockSeqs : G CCCA GTCTGATT . . . A . . . . . . . A T . CA . . GAA . . . AAG . . . G C G . G . . T T C . . . . . . G A . T A . G C G . TA .
blockSeqs : G TCTA TTCATAT . . . A . . . . . . . G C . TC . . . . . . A . . . G . . . G . . . . . . . G A . A A . G G . . . .
blockSeqs : T CCTA ATTTGA . . . A . . . . . . . . A . . . . . T . . . A . . . . . . . T A . A . . T T
blockSeqs : T CCTT ATCAGA . . . A . . . . . . . . . . . . . . . . . G A . T . . G .
blockSeqs : A GCTG ATCTGA . . . A . . . . . . . . . . . .
blockSeqs : TTA GTC . . . A . . . . . .
blockSeqs : CCA . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : .
blockSeqCons : ATCCGATT************ GAAT******* ***** ******* AAG**** GAGAA****************** TAAACCAT**********************
originalCons : AGGCAGGAGTAACGGACCTTGGTTGGTCCCT-----C---C-----------A------CCCC-------AT---CCGAT-T-TTTTT---------TT-T----TC-----A-----A---TTTT-TT-----------------T-TC-AA-----------TCC--ATCGTATA--NAA--CA-------A-A----CA---AACAA-A-AA---A--GTAAAAAAAA----A-GTGAC-AAACATA-AGTTGAGTA-A---AGGCCTT------TTACTTCAAGGAACGGCCCACATACCCCCAACTGTCTTCAGACACCCGCTGTG-C-AAAAACTATAACGAATATTCTTATACGGCATACAC-----AGAAAGCTAGAGGAG-------GTATTACGTGACAAAATAAGCCCAACANCAGAAATATTGAGCCAGCCGTTCCTGAATAAGACC-------CTTTCAAATCGCCCAT-T-NA--G-G-G-CTAAANAGTTTAGTCGTAAATAAAGTGGC-ACA-AATTTTAA-CGGGTT----AT--TACAAGACTAAAAC-GGCTCAACACAACTGTAGCCTG-G---TATG---A------CA---TGTTTCAAGGNAAGTCAACAACAAATGAACTCTTTCATGCTCACTTACTTATTTCAATATCGTCT-AGAACAGCTNATNAGAGCAA-TTTCCTAATCCGCAAC--T------------TG--TTTGCTGAA-----------ATTTTCT---ATT----TG------AATT---CT-GT----------A------TT-ATGTATCAAGCGCGCTGATTGGT--CCT------TCCTCG---------GGGAAGTGTA-TTTAGGACCAATCAGCGCGCTTNATACAT--A-------AT--TGA---NAAAT-----AGAAAATGGCAGACTTTGTTCAACATATNNGTTACGGANTAGAAAACTGNTCTGATA
finalCons : AGGCAGGAGTAACGGACCTTGGTTGGTCCCT-----C---C-----------A------CCCCATCCGATT------------TTTTT---------TT-T----TC-----A-----A---TTTT-TT-----------------T-TC-AA-----------TCC--ATCGTATA--NAA--CA-------A-A----CA---AACAA-AGAAT-------AAAAAAAA----A-GTGAC-AAACATA-AGTTGAGTA-A---AGGCCTT------TTACTTCAAGGAACGGCCCACATACCCCCAACTGTCTTCAGACACCCGCTGTG-C-AAAAACTATAACGAATATTCTTATACGGCATACAC-----AGAAAGCTAGAGGAG-------GTATTACGTGACAAAATAAGCCCAACANCAGAAATATTGAGCCAGCCGTTCCTGAATAAGACC-------CTTTCAAATCGCCCAT-TAAG----G-G-CTAAANAGTTTAGTCGTAAATAAAGTGGC-ACA-AATTTTAA-CGGGTT----AT--TACAAGACTAAAAC-GGCTCAACACAACTGTAGCCTG-G---TATG---A------CA---TGTTTCAAGGNAAGTCAACAACAAATGAACTCTTTCATGCTCACTTACTTATTTCAATATCGTCT-AGAACAGCTNATNAGAGCAA-TTTCCTAATCCGCAAC--T------------TG--TTTGCTGAA-----------ATTTTCT---ATT----TG------AATT---CT-GT----------A------TT-ATGTATCAAGCGCGCTGATTGGT--CCT------TCCTCGGAGAA------------------AGGACCAATCAGCGCGCTTNATACATTAAACCAT----------------------AGAAAATGGCAGACTTTGTTCAACATATNNGTTACGGANTAGAAAACTGNTCTGATA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|26 ): CAAAGGCAAGATTAACGAACCTTGAGCGTTCTCATCCTCTCTTTTTTTATTTATTTATATTTTTTTATTGTCAAATCTATGTTCAAATCAGTCAAAATGCCCCTTT
Alignments
lowQualScore : 333333333333333333333333 222222222222 111111111 11111111111 222222222222222 11111111111 11111111111111 222222222222 1111 111111 11111 1111111 1111111 1111111 1111 11111 2222222222 111 2222222222222222 88888888888888888888888888888888888888888888888888888888888888888 11 111111 8888888888888888888888888888 888888888888888888888888
lowQualScore : 2 555555555555555555555555 555555555555 5 9999 000000000 55 5555 66666666666 444 5 111111111111111 2 2 33333333333 44 4 555 555 55 66666666666666 666 111111111111 0000 3 3 6666 3 555 000000 0 4 44 3 2 00000 0 3333333 2 1 1 0 6666666 1 0000000 4 4 11 3 0 5 4444 0 4 7777 55 0 3 0 0 0 00000 6666666666 777 1 1 0 0 3 1 4 4 4 0 0 5555555555555555 55 0 00000000000000000000000000000000000000000000000000000000000000000 5 11 444444 8888888888888888888888888888 1 99 6 6 111111111111111111111111 1 0 22 22 1 1 1
lowQualScore : . ........................ ............ . .... ......... .. .... ........... ... . ............... . . ........... .. . ... ... .. .............. ... ............ .... . . .... . ... ...... . . .. . . ..... . ....... . . . . ....... . ....... . . .. . . . .... . . .... .. . . . . . ..... .......... ... . . . . . . . . . . . ................ .. . ................................................................. . .. ...... ............................ . .. . . ........................ . . .. .. . . .
lowQualScore : 1 666666666666666666666666 222222222222 8 6666 000000000 99 3333 11111111111 111 0 999999999999999 5 7 66666666666 66 4 888 666 00 11111111111111 444 666666666666 4444 3 3 3333 3 888 555555 2 2 22 6 0 00000 7 0000000 3 0 9 2 2222222 4 5555555 4 4 22 6 5 7 9999 9 0 7777 00 1 6 4 4 2 66666 1111111111 555 0 3 3 7 3 0 2 1 0 8 5 3333333333333333 55 7 00000000000000000000000000000000000000000000000000000000000000000 0 99 444444 3333333333333333333333333333 0 22 7 7 444444444444444444444444 4 8 22 00 2 0 0
consensus : AGGCAGGAGTAACGGACCTTGGTTGGTCCCT-----C-----C-----------ACCCC-------AT---CCGAT-T-TTTTT---------TT--T----TC-----A-----A---TTTT-TT---------------T-TC-AA-----------TCC--ATCGT---ATA--NAA--CA-------A-A----CA---AACAAAGA---A--T---AAAAAAAA----A-GTGAC-AAACATA-AGTTGAGTA-A---AGGCCTT------TTACTTCAAGGAACGGCCCACATACCCCCAACTGTCTTCAGACACCCGCTGTG-C-AAAAACTATAACGAATATTCTTATACGGCATACAC-----AGAAAGCTAGAGGAG-------GTATTACGTGACAAAATAAGCCCAACANCAGAAATATTGAGCCAGCCGTTCCTGAATAAGACC-------CTTTCAAATCGCCCATT-AA--G-G-G-CTAAANAGTTTAGTCGTAAATAAAGTGGC-ACA-AATTTTAA-CGGGTT----AT--TACAAGACTAAAAC-GGCTCAACACAACTGTAGCCTG-G---TATG---A------CA---TGTTTCAAGGNAAGTCAACAACAAATGAACTCTTTCATGCTCACTTACTTATTTCAATATCGTCT-AGAACAGCTNATNAGAGCAA-TTTCCTAATCCGCAAC--T------------TG--TTTGCTGAA-----------ATTTTCT---ATT----TG------AATT---CT-GT----------A------TT-ATGTATCAAGCGCGCTGATTGGT--CCT------TCCTCG---------GAG-----AAGTGTATTTTAGGACCAATCAGCGCGCTTNA--TAC-A-T--T----A-AACCT---AT-----AGAAAATGGCAGACTTTGTTCAACATATNNGTTACGGANTAGAAAACTGNTCTGATA
Reference ( family-1098 ) : AGGCAGGAGTAACGGACCTTGGTTGGTCCCT-----C-----C-----------ACCCC-------AT---CCGAT-T-TTTTT---------TT--T----TC-----A-----A---TTTT-TT---------------T-TC-AA-----------TCC--ATCGT---ATA--NAA--CA-------A-A----CA---AACAAAGA---A--T---AAAAAAAA----A-GTGAC-AAACATA-AGTTGAGTA-A---AGGCCTT------TTACTTCAAGGAACGGCCCACATACCCCCAACTGTCTTCAGACACCCGCTGTG-C-AAAAACTATAACGAATATTCTTATACGGCATACAC-----AGAAAGCTAGAGGAG-------GTATTACGTGACAAAATAAGCCCAACANCAGAAATATTGAGCCAGCCGTTCCTGAATAAGACC-------CTTTCAAATCGCCCATT-AA--G-G-G-CTAAANAGTTTAGTCGTAAATAAAGTGGC-ACA-AATTTTAA-CGGGTT----AT--TACAAGACTAAAAC-GGCTCAACACAACTGTAGCCTG-G---TATG---A------CA---TGTTTCAAGGNAAGTCAACAACAAATGAACTCTTTCATGCTCACTTACTTATTTCAATATCGTCT-AGAACAGCTNATNAGAGCAA-TTTCCTAATCCGCAAC--T------------TG--TTTGCTGAA-----------ATTTTCT---ATT----TG------AATT---CT-GT----------A------TT-ATGTATCAAGCGCGCTGATTGGT--CCT------TCCTCG---------GAG-----AA---------AGGACCAATCAGCGCGCTTNA--TAC-A-T--T----A-AACC----AT-----AGAAAATGGCAGACTTTGTTCAACATATNNGTTACGGANTAGAAAACTGNTCTGATA
gi|1 : AGGCAGGAGTAACGGACCTTGGTTAGTTCCT-----C-----A-----------ACCCC-------AT---CTGAC-TGTTTTT---------TT--T----TC-----A-----A---TTCT-TT---------------T-TC-GG-----------TCC--ATCGT---ATA--AAA--CA-------A-A----CA---AACAAACA---AAGC---AAAAAAAA----A-GTGAC-AAACATA-AAATGAATA-A---AGGCTGT------ATACTTCAAGACACAGCCCACATACCACCAGCTGTCTTCAGACACCCGCTGTG-C-AAAAACTATAACGAATATTCTTATACAGCATACACTACTAAGGAATTTTCAATAGTTCCTTGGTATAACGTAATAAAATAAGCCTAACCACAGAAAAACTGAGTCAGCCGTTCCTGA-TAAGACC-------CTTTCAAATCGCCTATT-TG--G-A-G-CTAATAAATAAAGTCGTAACTAAAGTGGT-ACA-ACTTTTAA-CGGATT----AT--TACAAGACTAAACC-GGCCCAACACAACTGTAAGTTG-A---TATG---T------TA---TGTTTCAAGGAAAGTCAACAACAAATGAA-TCTTGCATGCTCACTTACTAATTTCAATATCATCTAAAAACAGCTCATGAGACCAA-TTTCCTAATCCATAAC--A------------AA--CATGATGAA-----------ATTTTCT---ATT----TG------AATT---CT-GT----------A------TT-ATGTATCAAGGGCACTGACTGGT--CCT------TGCTCG---------GGA-----AAGTGTATTTTAGGACCAATCAGCGCACTTCATTTATAA-T--T----ATGACTTGAAAT-----AGAAAATGGCAGACTTTGTTTAACATCTTTGTTACGGATTAGAACACTGGTGTCATA
gi|10 : GTCAACAACAAATGAACTCGTTCATTCTCACTTACTTATTTCAATGTCATCT-TAAACAGATCACAAAACCAA-TTTTCTAATCCATAAT--T------------TG--CTT-----------------ATTGTCA---AT--------------ATA---CT-GC----------AATT---TT-ACGTCTCAAGTGCACTGATTGGT--CCT------TCCCCG---------GAG-----GAGTGTATTTTAGGACCAATCAGCGCACTTCA--TGC-A-T--G----A----C----AT-----AGAAAATGGCAGACTTTGTTCAAAATGTTTGTTACGGATTgaccatattt
gi|11 : -----A---TTTA-TG---------------T-TT-AA-----------CCC--ATCGT---ATA--TAA--CA-------A-A----CA---CACAAAAA---G--T---GGGGAAAA----ACGTGAC-AAACATA-AGTTGAGTA-A---AAGTCGT------TTAC---AAG---------ACTCAGCCCTAACTGTCTTCAGACACCCGCTGTG-CAAAAAACTATTAAGAGTATTCTTATACGGCATACAC-----A------------------------------GACATAA---GCCCAACAACAGAAATACTAAGCCAGCCGTTCCTGAACAAGACT-------CTTTCAAATCGCTAATT-AA--GAA-A-CTAAACAGTTTAGTCGTAAAaatagtaataaacaagttatattacacataaaaactgttataa
gi|12 : T----AA--TACAGGACTAAAAC-GGTTCGAAACAACTGTAGCCTG-T---GATG---ATAA---CA---CGTTTTAAGGTAAGTCAACATCAAATTTTTTCTTTCGTGCTCACTT--------CATTATCGCAT-AGAACAGCTGATCAGAGCAA-TTTTCTACTTCGCAAC--T------------TG--TTTGCTGAACG---------ATGTCCG---CCC----TG--------TT---CCAGCCAATAAAAAGA------TTGATGTATCAAGCGTGCTGATTGGT--CCT------gt
gi|13 : aACTGTCTTCAGCCACCCGCTGTG-C-AAAAACTATAACGAATATTCCTTTACGTCATACAC-----AGAACGCTGAAGGAG-------GTAATACTTGATAGAATAAGCC--ATATT-GACATATTGAGCCAGCCGTTCCTGCATATGACCCTAAAGGCTTTCAAATCATCCATTAAA--G-G-G-TTAaaatacccccccccccccccacacacacacacacacaca
gi|13 : tctTTAA-AGGGTT----AT--TACAATATTAATTC-GGCTTAACACAA-------CTG-G---TATGACAA------CA---TGTTCCAAGGAAAGTCAGCAAttacaatattaattcggcttaacacaactggtatgacaacatgttccaaggaaagtcagcaat
gi|14 : tctactgtcttcagccacccgctgtgcaaaaactataacgaatattcctttacgtcatacacagaacgctgaaggaggtaatacttgatagaataagccatattgacatattgagccagccgttcctgcatatgaccctaaaggctttcaaatcatcca-G-A-CTAGACAGTT-AGT----AA-AAAGTGGTTGTG-AATTTTAAACGGATT----ATATTACACGATTATAAC-GACTTAAAACAACTCTTGTCTG-A---TATG---A------CAGCATGTTTCAAGACAAATCAACAATAAATGAACTCTTTCATGCT----TACTTCTTTCAATATCATCA-AGTACAGCTTATCAGAGCAG-TTTCCTATTCCACAAA--T------------TA--TTTGCTGAA-----------t
gi|14 : cgctATGGCAGACTATGTTCAGCAAATAATTTGTGGAATAGGAAACTGCTCTGATAcatagtctgccatgt
gi|15 : cgctgactagacagttagtaaaaagtggttgtgaattttaaacggattatattacacgattataacgacttaaaacaactcttgtctgatatgacagcatgtttcaagacaaatcaacaataaatgaactctttcatgcttacttctttcaatatcatcaagtacagctAGGCAGGATTAATGAACCTTGGATGGTCCCT-----CTAC--C-----------ACCCCCTCCCTCATACCCCAAT-T-TTTTTGTCAAATGTTT--T----TTGGTCAA-----A---TCTA-TG---------------T-TC-AA-----------TCC--ATC------CA--AAA--CACCCATTTA-A----CA---AA-AAAAA---A--T---AAAAAAAAT---A-G-----AAACAT----TTGAGTA-A---AGGCCTT------TCACTTCAACGAACGGCCCATATGCCCCCAACTGTCTgt
gi|16 : acGCATGAGTAACGGACCTTGGTTAGTTCCC-----C-----T-----------ATCTC-------AT---TTGA-----TTTT---------TT--T----TC-----A-----A---TTTT-GT---------------T-TC--------------TCCAAAT-GT---ATGTTCAGTTCA-------A-T----CT---ATCAAAGATCTA--T---TAAACAAA----G-ATGCCAAAACATA---TTAAGTATATTTATGTATTTTATTGTTACTTCAAGGCATAGCTCACATACCCACAACTG
gi|17 : acatGTTAGTCTCC-----C-----C-----------ACCCC-------TT---CTGAT-T-TTTTT---------TTC-T----TC-----A-----A---TTTT-TT---------------T-T--AA-----------TCC--ATTGT---ATA--TAA--CA-------ATA----AA---AAC
gi|17 : gcagttaaaaatACTTCAAGGATTAGCCCACATACCCTCAACTGTCTTCAGACACTC-----A-C-AAAAATTAGAATGAATGTTCTTATATGGTATACAttcaaggattagcccacataccctcaactgtcttcagacactcacaaaaattagaatgaatgttcttatatggtatacatgtacaatgaaagga
gi|18 : gcagttaaaaatgttagtctccccaccccttctgatttttttttcttcaattttttttaatccattgtatataacaataaaaAAGCAGGATAAATGGACCTTGGTTGGTCCCT-----CTCTACC-----------ACCCCCCCCCC-ATACCCCAAT-T-TCTTT---------TTCAT----TT---------------TTTT-TTTTTGTCAAATCTATGT-TC-AA-----------TCC--ATC------CA--AAA--CA-------C-C----CATTTAACAA-------------AAAAAAAT----A-GTGAG-AAACATA-tgtacaatgaaagga
gi|19 : acAAGGAACGGTCCACTTACCACCGACTGTCTTCAGACAT-------------AAACGATAAAGGATATTCATAAACACTATACAC-----AGAAAGCTAGCGGAA-------GTATTACGTGACAAAATAAGCACAACtatt
gi|19 : AA-CGGGTT----AT--TATAAGACTAgggttattataagactattatgcc
gi|2 : aaggaacggtccacttaccaccgactgtcttcagacataaacgataaaggatattcataaacactatacacagaaagctagcggaagtattacgtgacaaaataagcacGGCAGTAGCAATGAACCATAGTCAGTTCCC-----C-----C-----------ATTCT-------AT---CTGAT-T-TTTTT---------TT--TAAAATCTTAA-A-----A---TTTA-TG---------------T-TC-AA-----------TCC--ATCGT---ATA--TAA--CA-------A-AGAAACG---AACAAAAA---A--TGATAATAATAA----A-GTGAC-AAACATC-AGTTGAGAA-A---AGGCATT------TTACTTCAAAGCACAGCCCACATACCACCAACTGTCTTCACACACCCGCTGT-----------ATAACGAATGTTCTGATACGGCATACAC-----AGACAACCAGAGGAG-------AAATCACGTGACAAAATAAGCCGAACGACAGAAATATTGAGCCAACCGTTCATGAATAAGACC-------CTTTCAAATCGCCCTTT-AATGG-A-G-CTAAAAAGTTAAGTCGTAAATAAAGTTGC-ACA-AATATTTA-CGGATT----AT--TACAAGAC-AGAACTGACTCAACACAACTGTAGTCTG-GTACTACA---A------CA---TTTTTCAAGGAGAGTCAACAACAAATGAACTCTTTCATGCTCACTTACCTATTTAAATATCATCT-AAAACAGCTCATGAGA-CAGTTTTCCTAAATCGTAACAATCAAATTGAACAATG--TCTCCC--------------ATTTTCT---ATT----TG------AATT---TT-GT----------A------TT-GTACATGAAGCACGCTGATTGGT--CCTAAAATACCCCCACCCCACCCCGAG-----AA---------TGGACCAATCAGTGCGCTTAA--TAC-A-T--ttatgcc
gi|20 : TATCATCT-AGAACAGCCGATGAGAGAAA-TTTCCATATCCATAAC--T------------TG--TTAACTGAAT----------GTTTACTGCCATT----T--------ACTAGCCA-AT----------AAGGAGTTT-ACGTACCAAACGCACCGATTGGT--CCT------TCCTTG---------Gaat
gi|21 : AGCCAGAAATAACGGGCTGTTGTTATTCTCT-----C-----T-----------ATCCC-------GT---C---------TTT---------TT--T----TC-----------A---CTTT-TT---------------T-TC-AA-----------gtatgtatt
gi|22 : gaccacAGGCAGGATTAGTTGACCTTGGTTGGTCCCTCCCTAC-----C-----------ACTCC-------AA---CCGaattttatcaaaattttctttaaaattttttttcaattctatgttcaatccatcct
gi|23 : acA---AACAAAGA---A--A---GAAGAAAA----A-GTGAC-CAACATA-AGTTGAGTA-A---AGATCTT------TTACTTCAAGGAAcccagttacaaatttgtggttatatattttattttaaaattaaatatgcgcagatcctctcaatacac
gi|24 : aattttatttggtcaaatctatgcccaaaattattgaaagtaccaacttattACTTATATCATTATCGCCT-AGAACAGCTGATCAGAACAA-TTTTCTACTCCGAAAC--T------------TG--TTTGCTGAA-----------
gi|24 : CGCTTGA--TAC-A-T--C----A-ATCTTTTTATTGGCCGGAACATGGTGGACATCGTTCAGCAAACAAGTTTCGGAGTAGAAAATTGTTCTGATcgatgtccaccatgttccggccaataaaaagattgatgtatcaagcg
gi|27 : acttatatcattatcgcctagaacagctgACAAGACTAAAAC-GGCTTAACACAACTATAGCCTG-G---TATG---A------CA---TGTTTCAATGTAAGTCAACAACAAATGAACTCTTTCATATACATTT-CTT
gi|28 : tacttcaaggaagGGTTAGTCCCC-----C-----T-----------ACCTC-------AT---CTGAT-T-TTAGT---------TT--T-----C-----A-----G---TTTT-TTTCTTC----------T-TC-AGATCTGTGTTGTTCC--ATCAT---ATA--TAA--TA-------
gi|29 : TTT---------TT--T----TC-----A-----A---TTCTATG---------------T-TC-AA-----------TCC--ATCCT---ATA--TAA--CA-------A-A----CA---AACAGACA---T--T---AAAATCC-------GTAAC-AAACAT---TTTGAACA-A---AGttagggtcaaaacat
gi|3 : AGGCAGGAGAAACGGACTTTGGTTGGTCCTC-----C-----T-----------TCCCA-------AT---CAGA-----TTAT---------AT--T----TC-----A-----AAACTTAT-TT---------------T-TC-tctg
gi|3 : cT-T-TTCTT---------TT--T----T----------------TTTT-TT---------------T-TCAAA-----------TTC--A-CAT---ATA--ttgtttttttcttttttttttttttcaaattcacatatattttcaattatatgttcaatccatcatacacattacacgaagaaagaaacaaaaatggtaacaaacataaagctttttacttcgaagcacagcccatataccccaactgtcttcagacaaccgctttgcaaaaactatgacgaatattcttatacgaaatgcttagccaggtggtcgatgtattacgtgacaaaataagcccaacaacagaaatattgagccaaccattcctgaataagaccctttcaaatcgcccatttaggtgctaaaatgtttagtcgtaaataaagtgacacacattttaacggattattgcaagactaaaccggctcaacacaactgtagtctggtatgacaacgtcatgtttcaaggaaagtcaacaacaaatgaactctttcatgctcactttcttattttaatatcatctaaaacagctcataaaata
gi|3 : caggcaggagaaacggactttggttggtcctccttcccaatcagattatatttcaaaacttatttttcttgttt---------TT--T----TC-----A-----A---TTATATG---------------T-TC-AA-----------TCC--ATCAT---ACA--CAT--TA-------C-A----CG---AAGAAAGA---A------ACAAAAAT----G-GTAAC-AAACATA-AA--------------GCTTT------TTACTTCGAAGCACAGCCCATATACCCC-AACTGTCTTCAGACAACCGCTTTG-C-AAAAACTATGACGAATATTCTTATACGAAATGCTT-----AGCCAGGTGGTCGAT-------GTATTACGTGACAAAATAAGCCCAACAACAGAAATATTGAGCCAACCATTCCTGAATAAGACC-------CTTTCAAATCGCCCATT-TA--G-GTG-CTAAAATGTTTAGTCGTAAATAAAGTGAC-ACA-CATTTTAA-CGGATT----AT--TGCAAGACTAAACC-GGCTCAACACAACTGTAGTCTG-G---TATG---ACAACGTCA---TGTTTCAAGGAAAGTCAACAACAAATGAACTCTTTCATGCTCACTTTCTTATTTTAATATCATCT-AAAACAGCTCATAAAAttttcaattatatgttcaatccatcatacacattacacgaagaaagaaacaaaaatggtaacaaacataaagctttttacttcgaagcacagcccatataccccaactgtcttcagacaaccgctttgcaaaaactatgacgaatattcttatacgaaatgcttagccaggtggtcgatgtattacgtgacaaaataagcccaacaacagaaatattgagccaaccattcctgaataagaccctttcaaatcgcccatttaggtgctaaaatgtttagtcgtaaataaagtgacacacattttaacggattattgcaagactaaaccggctcaacacaactgtagtctggtatgacaacgtcatgtttcaaggaaagtcaacaacaaatgaactctttcatgctcactttcttattttaatatcatctaaaacagctcataaaata
gi|30 : caggcaggagaaacggactttggttggtcctccttcccaatcagattatatttcaaaacttatttttcttgtttttttcttttttttttttttcaaattcacatataAGACAGAAGTAACGGACCTTGGCTAGTACCT-----------T-----------ACCCC-------AT---CTGA-----CTTT---------TT--T----CC-----A-----A---TTGT-TT---------------T-TC-AA-----------ta
gi|31 : ccatAGGCAGGCGTAACGGACATTAGTTAGTACCG-----C-----T-----------GCCCC-------GT---CTGAT-T-TTTTattgt
gi|4 : attcacAAACAA----A-GTGAC-AAACATA-AGTCGAATA-A---AGTGCTT------TTATTTCAAGGAAT---------------AA-----TTCATACGCC----GTT-C-AAAAACTATAACGGATATTTTAATACGACATACAC-----ATAAATCTAGGAAAG-------GTATTGCGTAACAAAATAATCACAAAATTAAAACTATTGAGTCAGCCGTTCCGGAATAAGACC-------CTTTCACATCGCCAA-T-AT--C-G-G-CTAAACAGTTTAGTCGTAAATAAAGTGGT-ATA----TTTAA-CTATTTTGACAT--TTTAAGAATAGAAC-TGCTCAAAACAACCCTAGCCTG-G---TATGGCAA------CA---TGTTTCAAGGTAAGTCAACAACACAGCATTTCTGTCATGCTCACTTATGTTTATCAATATCATCT-GAAACAGCTGAT--GAGC-----------TCCACAAC--T------------TG--TTTGCTGAACAATGTCTGCCATTTTCC---AGT----CA------A--T---AT-GTAG--------A------GT-ATATACGAAGCGCACTGATTGGT--CCT------TCCTTG---------GGGTGTTTAA---------A-GACCAATCAGCGCGCTTCA--TAC-A-TAATTCAGA-AATCAA--AC-----AAAAAATGGCAGACTATGT--AACATcc
gi|5 : GGATTAATGGACCTTGGTTGGTCTCT-----C-----CCTACCACACCCACCCCCAC----AC---CCCAA-T-TATTT---------TT--T----TC-----A-----A---TTTtt
gi|5 : TTGAGTA-A---AGGCCTT------TCACTTCAACGAACGGCCCATATACCCCCAACTGTCTTTAGACACCCGCTGTGGC-AAAAACTATTAAAACTATTCTTACACGGCATACAC-----AGAAAGCTAGAGGAG-------GTATTACGTGACAAAATAAGCCTAACATTAGAACTATCGAGCCAGCCGTTCAGGAATAAGACC-------CTTTCAAGTCGCAACTT-CA--GCG-G-CTAAATCGCTTAAACGACAATAAAGTGGC-ATATTATTTT-A-CGGGTT----AA--TACAGGACTAAAAC-GGCTCGAAACAACTGTAGCCTGTGAT-TATA---A------CA---CATTTTAAGGTAAGTCAACATCAAATTAATTCTTTCGTGCTCACTTACTTATTTCATTATCGCCT-AGAACAGCTGATCAatatatatatttgagtaaaggcctttcacttcaacgaacggcccatatacccccaactgtctttagacacccgctgtggcaaaaactattaaaactattcttacacggcatacacagaaagctagaggaggtattacgtgacaaaataagcctaacattagaactatcgagccagccgttcaggaataagaccctttcaagtcgcaacttcagcggctaaatcgcttaaacgacaataaagtggcatattattttacgggttaatacaggactaaaacggctcgaaacaactgtagcctgtgattataacacattttaaggtaagtcaacatcaaattaattctttcgtgctcacttacttatttcattatcgcctagaacagctgatcatcggccattccagaataacga
gi|6 : ggattaatggaccttggttggtctctccctaccacacccacccccacaccccaattatttttttcaatttatatatatatTTAA-AGGGTT----AT--TACAATATTAATTC-GGCTTAACACAA-------CTG-G---TATGACAA------CA---TGTTCCAAGGAAAGTCAGCAATAAtcggccattccagaataacga
gi|6 : AACACAGCTGTAACCTG-T---TATG---A------CAATTTGTTTCAAGGAATGCCAACAACAGATGAACCCTTTCATGTTGACTCACTTATTTCAGTATCATCT-AAAACAGCTTATGAGACCAT-TTTCCTAATCCATAA----------------TGAACATGTTGAACAAAGTCTGTTATTTTCT---ATT----TA------AATT---CT-GT----------A------TT-ATGCACGAATGAAGTTGATTGGTGCCCC------GCCTCG---------AAG------A---------AGGACCAATCAGTGTGCTTGA--TAC-ATT--T----G-AAAC----AT-----Ataagtagattatgtttcaaatgtatcaagcacactgattggtccttcttcgaggcggggcaccaatcaacttcattcgtgcataatacagaatttaaatagaaaataacagactttgttcaacatgttcattatggattaggaaaatggtctcataagctgttttagatgatactgaaataagtgagtcaacatgaaagggttcatctgttgttggcattccttgaaacaaattgtcataacaggttacagctgtgtttttcgacaagaactcattttacatggatggaatagaaaatgtgaaaagtaaacaattatataaacg
gi|7 : ttaaagggttattacaatattaattcggcttaacacaactggtatgacaacatgttccaaggaaagtcagcaataataagtagatTAACGACTATTCTAAAACG-----C-C-----AGAAGGCTAGACGAG-------GTATCACGTGACAAAGTAAGCACAACACCAGAATAATAGAGCCAAACGTTCAAGAAAAATACG-------TTTTCAAATCGTCCATT-AA--G-G-GACTAAAACGTTTAGTCGACAATAA--TGGT-A----ATTTTCA-CGGGTT----AT--TCCAATGCTACAAC-GGTTTGAAAGAAATGTAGCCTG-G---TATG---A------CAACATGTTTCAAAGTAAGTTAACAACATTTGAACTCTTTCATGCTCACTTACTTATATCAATGTCGCCT-GGAACAGCTGATTAGAGCAA-ATTCCTGATCCGCAAT--A------------TG--TTTGCTG-A-----------CTGTTC----ATTGACATGTCTAGCAAAT---CA-GTAG--------A------TT-ATGTATCAAGCCCGCTTATTGGTA-ATT------TCCTtttcgacaagaactcattttacatggatggaatagaaaatgtgaaaagtaaacaattatataaacg
gi|8 : AGGCCGGATTAATGGACCTTGGTTGATCCCT-----C-----CCTACCACCCTTACCCC-------ATACCCCAAA-T-TTTTT---------TT--G----TC-----A-----A---TTTT-TT---------------TGTC-AA-----------ATC--TTTGTTCAATC--CAT--CC-------A-A----AA---AATAAA-A---G--T---AAAATAAATGATA-GTGAG-AAACATATATTTGAGTA-A---AGGCCTT------TCACTTCAACGAACGGCCCATATA-CCCCAACTGTCTTTACACACCGGCTGTG-C-AAAAACTATTAAGATTATTCTTACACGGCATGCAC-----AGAAAGCTAGAGGAG-------GTATTACGTGACAAAATAAGCCTAACATCAGAACTATCGAGCCAGCCGTTCttggatgttt
gi|9 : AGACAGGAATAACGGAC----ATTGGTCCC------C-----C-----------ACCCC-------TT---C--ATAT-TTTTT---------TT--T----TC-----AGAAATA---TTTT-TT---------------T-a
gi|9 : cacAACAA----A-GTTTA-AAACATA-AGTTGAGTA-A---AACCTTT------TTACTACTAGCAACAGTCCACATACCCCCAACTGTTTTCTGATACCCGCTGTG-T-AAAAACTATAACGAATATatatatatatatttttttcaatctgtgttcaatccacaggacgtatcttacttatcttttggatagctatcgatataaagtaaattaactacatatagctatccaaaaggtatagtaagatagggcctgtggttcaatcaacaaagtttaaaacataagttgagtaaaacctttttactactagcaacagtccacatacccccaactgttttctgatacccgctgtgtaaaaactataacgaatat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): TTTTTTTTCTCACGGACCCTGTTTTGTCAAATTTAATCCATGTTCAGTCCATTAAAAACTAGTAACAAACATAAATTGAGTAAAGGCCTTCTACGTCAAGGAAAGGC
Unaligned ( gi|26 ): CAAAGGCAAGATTAACGAACCTTGAGCGTTCTCATCCTCTCTTTTTTTATTTATTTATATTTTTTTATTGTCAAATCTATGTTCAAATCAGTCAAAATGCCCCTTT