lowQualScore : 1111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111 222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 55 111 111 1 1 1 66666666666666666666666666666 11 3333333333333333333333333333 999999999999999999999999999999999999999999999999999999 11111 333333333333333 1111111111111111111111111111111111111111111111111111111111 11 1 777777777777777777777777777777777777777777777777777777777777777 22222222 2222222222222 11 111111 3333333333333333333333333333333333333333333333333333333333333333333333333 2222222222 2222222 444444444444444 1 3333 11 1111 1 1 1 999999999999999999999999999999999999999999999999999999999999999999999999999
lowQualScore : 6 55 222 3 111 5 3 5 0 8 55555555555555555555555555555 1 55 4444444444444444444444444444 55 2 888888888888888888888888888888888888888888888888888888 55555 5 3 555555555555555 77 0 5555555555555555555555555555555555555555555555555555555555 4 3 666 1 777777 7 44 1 3 3 444444444444444444444444444444444444444444444444444444444444444 0 7 0 2 2 8 4 33333333 4 1 2222222222222 44 0 666666 4 777 5 8888888888888888888888888888888888888888888888888888888888888888888888888 8888888888 3333333 0 88 666666666666666 77 2 4 4 55 5 2222 4 5 66 5 5 2222 6 3 3 6 0 1 5 6 555555555555555555555555555555555555555555555555555555555555555555555555555
lowQualScore : . .. ... . ... . . . . . ............................. . .. ............................ .. . ...................................................... ..... . . ............... .. . .......................................................... . . ... . ...... . .. . . . ............................................................... . . . . . . . ........ . . ............. .. . ...... . ... . ......................................................................... .......... ....... . .. ............... .. . . . .. . .... . . .. . . .... . . . . . . . . ...........................................................................
lowQualScore : 0 00 555 0 000 0 0 0 0 0 77777777777777777777777777777 4 55 5555555555555555555555555555 11 0 111111111111111111111111111111111111111111111111111111 22222 7 9 777777777777777 99 7 4444444444444444444444444444444444444444444444444444444444 4 6 444 6 444444 8 66 8 3 3 777777777777777777777777777777777777777777777777777777777777777 7 8 2 9 9 0 9 66666666 0 0 0000000000000 11 6 000000 4 888 3 8888888888888888888888888888888888888888888888888888888888888888888888888 8888888888 0000000 3 44 888888888888888 99 5 4 0 55 7 1111 4 1 00 7 7 1111 7 3 5 5 2 0 0 0 000000000000000000000000000000000000000000000000000000000000000000000000000
consensus : NAACACA--TAGACNNATCNCTGNNNGTGANTGACACC-CCA-CCAAACAGC------T-------A-TC--GA-------GTCCATTGTCACGATAGG-------GG---TGA---------TTTATCAACGGGTTTTGTGTTACTAAAACAATAGCA-ATAGGGACA-------NACAA--CTAGGCCTAGG-------TGC-----TTAG----GTACATTATT-TTAATATA---------------AT--TCAGGGAAGATGATTT-AA-----GCT----A--T-ATTTA--TT------A-T----------C--------CTA-ACAAAA-GT---TATC---A-GTCGGAAACC-GTTTTTTCTA-T-TTTT-AGCAACG----G--T----GA--C-CTTGACCCCA-------G-T-GA-C--CC-A---TATACAATNCCAAC-C-TTCCTCTCCATCCAGTCTACCCACANACCAAG-TTTCATGG-------------CAATATCTCACTCCTAACAAAA-G---TTATCAG------T--C-----CGAAA----------T-TATT---CT---TCTA-TTTT-----TA-------------GCAACG--GT----GACCTTGAC------CCCAGTGGCCC-NATATN---CAA--TCCN--AACC-TTCCTCTCCATCCAGTCT-AC--CCACACACCAAGTTT-CATGGCAATATCTCACTCCTAAC-AAAA-GTTAT----CAGT-TG-AAAACAACGGGATGGGATGTGATTCCCACAA----TGT-CAGAGCCC---CCAT--CTG-----ACCC--CAAAC--CTTGTTTT-CTGGGTTTTGAAAATAATTA
Reference ( gi|1 ) : GAATACAACTAGATCTATCACTGAAAGTCATTCATACC-CCA-CCAAACAGC------T-------A-TC--GG-------GTCCATTGTCAAAATAGG-------GG---TGA---------TTTTTCAATGGGTTTTGTGTTACTAAAACAATGGCA-ATAGGGACA-------TACAA--CTAGATCTAGGT------TGC-----TTAG----GTACATTATT-TTAATATA---------------AT--TCAGGGAAGATGATTT-CA-----GCT----A--C-ATGTA-GTT------A-T----------C--------CTA-ACAAAA-GT---TACC---A-ATCAGAAACA-ATTTTTTCTA-T-TATT-ATTAATGA-AAG--T----GA--C-CTTGACCCCA-------G-T-GA-C--TC-A---TATACAATCCCAAC-C-TTCCTTTCTATCCAGTCTACCCTCACACCAAG-TTTCATGG-------------CAATAACTCATTCATGACCAAA-G---TTGTCAG------T--C-----TGA------------T-TATC---CC---CCCACTTTT-----TT-------------GCAACA--GA----GACCTTGAC------TCCAGTGACCC-AATATT---CAA--ACTA--AACT-TTCCTCTCCTTCCAGTCT-AC--CCACACATCCTGTTT-CATGGCAATATCTTATTCATAAC-AAAA-GTTAT----CAGT-TG-AACACAACAGAATGAGCTGCGATT--CACAAAGTTTGTATAAAGCCCCAACCATGCCTGCCCCCACCCTGCAAACCTCTTGTTTTGTTGGGT-------ATAATTAT
gi|13 : AACACA--TAGACAAATCATTGTATGTGATTGATATC-CCAACCAAACAGCCGGTTGT-------AGTC--TA-------GTCCATTGTCATGATAGC-------GG-------------------TCAAAGGGTACTGTGTTATTAAAATAATAG
gi|2 : ACCTATCCCTAACAGTGAGTGACACCTCCA-CCAAACAGC------T-------G-TT--TGACATTATGCCCACTCTCATGATGTG-------GA---TGA---------TTTATCAATCAGCTTCGTGTCAC-AAAACGAT------TGGGGACA-------GACAC--TTA---CTA---------TGC-----TTAaa
gi|4 : aaaaacaC-CTA-TCAAACAGC------T-------G-TTTGAG-------GTC-ATT--CACAATAGGAAGGAGGGG---TGGGGGGGGAGCTTTATTAACAGGTTTTGTATAACTAAAGTAATAGCAGATAAG-ACGCCGTGGTTGCAATGCTA-ATTCATAC------T-T-----TTCG----CCAGATTCTT-TAAATATA---------------ATATTTTGGGAGGAGGACGT-AA-----GCTTGTTA--CTATTTA-TATCTCTCAA-T----------C--------TTG-ATAGAA-GT---TATC---A-GTCAAAAACC-ATTTTTCCTC-T-T-TT-AGCAATG----G--T----GA--C-CTTGACCCCG--------------------A---TATACAATCCCAAG-TATTCCTCTCCATCCAGTCTACC--------AGG-TTTCATGA-------------CAATATTTGATTCTAAACAAAA-G---TTATaagcttgccaaattttgtattcatgcgctatttagccaaattttgtattcaggaacattattttaatatatatatacatgtaataattcagggaagatgacttaagcttgttatttttatatctgtcactgatctaaccttttcctttttttaacaatggtgtctttgccctctgtgaccttatattatgcaatcccaaccgtcatctccattaagtctacccacataccaaatatcgtggcaat
gi|6 : ctC-CCA-TCAAACAGC------TGGTTGCCA-TT--GA-------GTCCAATGCCAAGATAGG-------GA---TGA---------TTAATCAATGGGTTTTGTGTTACT-AAACAATAGataatagttgaaacacaaagggatggg
gi|10 : A-CCAAATGGC------TGGATGCCA-TC--GG-------GCCCATTGTCATGGTAGA-------GG---TAA---------TTCATCAACCGGTTAAGTATAAGTGAAACCACAGCA-aagaaccctcctcttgattcattctacttacacaccagttacatggagacattgccttacaatactccttacaaaagtaattatcaatgggaagccatttttctattttaagcaatggtgaccttgaccccagaagccccatatgaaataccatccagtctacctacaagtttcatgac
gi|9 : -------A-TC--AA-------GTCCATCATCACAAAAGG-------GAGTATGA---------TATATTACTGGGTTTTGTGTTACCAAAACAGTAGAA-GAAGAAACA-------CACAA--CT-----TAGG---------------CTAG----CTGC--------TAATAT-----------------T--T--------AT--TTT-CA-----GCC----A--G-AT-TACCTC------ACT----------T--------TTA-ACAAAA-AT---TATC---A-GTTGGAAAC---CTTTTTTTA-T-TTAT-ATTAA-GT-AA---T----GATCC-CTTGATCCCA-------G-T--------------TA---------AAC-T-TTTCTCTCCATCCAGTtgttattttgtagaatctaagatacatacacccaccatgtcttgtagtaagttatcaatctgaaaccatttttctattttaacaccagtagccccataaacaactccaacctccctctatatccagtatac
gi|16 : agcgaagggctggccatc-------A-TT--GA-------GTCAATTGTCATGATAGG-------AG---AGA---------TTTATCAACAGGTTTTGTGT
gi|3 : aaatggctggttgtc--GA-------GTCCATTGTCATGATAAG-------GG---TGA---------GTTATCAACCAAATGTTTGCTCCGAAAACAAC-ATA-AAAGAGAAA-------CACAA--CTAGGCTTAGGA------TGC-----aagtattacagtacatta
gi|14 : tTTTATGTTACTATAACAAT------TAAG-AGA-------AACAA--CTTGGCCTAGTTGGCTAATGCAAACTTTAGCCATATACATTACT-TCAATACA---------------AT--TCAGGGAAGATGATTT-AA-----Gaaaataagtgacaatgtctgaaaaatattttttctatttatagcaacagtgaccttgaccttctccccatccagtctaaacacacatcaagttttcaggcaatatcttactcctgacataagttatcagtctgaaaccaacaaaagttctcaaaccgaaaccattttttttcttctaattttagcaacagtgaccttgaccttaattccagtagcccaaatattcccaaccttcatcccatccagtctaacaaccacacaccaaattcatggcaaattca
gi|2 : -----TCAG----GAACATTATT-TTAATATATATATACATGTAATAAT--TCAGGGAAGATGACTT-AA-----GCT----------T----GTT------A-T----------T--------TTT-ATATCT-GT---CACT---G-ATC--TAAC---CTTTTCCTT-T-TTTT-AACAATG----G--T----GT--C-TTTGCCCTCT-------G-T-GACC--TT-ATATTATGCAATCCCAAC-C-GTCATCTCCATTAAGTCTACCCACATACCAAA-TATCGTGG-------------CAAT
gi|12 : aaaaacaacctatccctaacagtgagtgacacctccaccaaacagctgtttgacattatgcccactctcatgatgtggatgatttatcaatcagcttcgtgtcacaaaacgattggggacagacacttactatgcttaaagcttgccaaattttgtattcatgcgctatttagccaaattttgtatAA----GTATATTATT-T-AATATA---------------GT--TCAGGGAATATGATTTTCATGCTTGTT----A--T-ATTTA---T------A-T----------CTCTCACTCCCA-ACAAAG-GT---CATCTGCA-GTCAGAAACA-GTTTTT-----------------------------------C-CTTGACCCCA-------G-T-GA-C--CC-AA--TATACAATCCTAAC-C-TTCCTCTCCATTCAGT
gi|18 : AG----GTACATTATC-TTAATATA---------------AT--TCAGGGAAGATGAa
gi|5 : TATTGTTAATATA---------------AT--TCAAGGCATATGATTC-AA-----GTT----TGTT-ATGT---TT------A-TATCTCTCGCTC--------GTAGACAAG--GT---TACC---A-GTGGGAAACC-GTT------A-T-TGTTTAGCAACGA------T----GA--C-CTT-ATTTTT-------G-T----------A---TATACATTATGAAG-C-TTTCTTCCTGTTC--TTT---CTCAGA--AAA-CA-CATAG-------------CAGTATTTCACTCTTAACAAAA-G---TTTTCCG------TGTT-----TGAAACC--------T-TATT---TT---CC-AGTTCTAATAACT-------------GTAATA--TT----GACCTTGAT------CCCAGTGGCCC-TACATG---TAATCAC-A--AACT-CTTCAATTTTTTTAGTCT-AC--CCATACACCAAGATT-AATGGCAATATCTCCTCCA-AATAAAAA-GTTAT----CA
gi|7 : tatattaacca-T----------C--------ATA-ATAAAA-GT---TATC---A-GTCCAAAACA-ATTTTT-CTA-T-TTTT-AGCAATG----G--T----GA--C-CTTGACCA-A-------G-T-GA-CAGTA-T---TATACATTACTGAC-C-TTCCTCTCCATCC----TAC----ATACCATG-TTTCATGG-------------AAATATCTCATTCCCAACAAAA-G---TTACCAG------T--------TGA------------a
gi|8 : caatatctcac-T----------C--------CTA-ATGAAA-TT---TATC---A-GACGAAAACT-GTTTTTTCTAAT-TTTT-AGCAATGGTGAGCTT----GA--C-TTTGACTCAA-------G-T-GA-C--ACTA---TATACAATTCCAAAAC-TTCCTCTCCATCTAGTCTACCCACAGA-TAAG-TTaatacaaaaggatgggatgtgattcccacaatgtcagagcccccatctgaccccaaaccttgttttctgggttttgaaaataatta
gi|6 : tttatatatatttagctacaatgaccattaccccagtagcccaatgtacaatcccaacctttctctgcatcaagtctactcacacaccaagttttatgggaatttctcac-T----------C--------CTT-ACAAAA-GTAATTATC---A-ATGGGAAGCC-ATTTTT-CTA-T-TTTA-AGCAATG----G--T----GA--C-CTTGACCCCA-------GAA-GC-C--CC-A---TATGAAAT----AC-C----------ATCCAGTCTACC--TA---CAAG-TTTCATGA-------------Cgtat
gi|11 : cccatcaaacagctggttgccattgagtccaatgccaagatagggatgattaatcaatgggttttgtgttactaaacaatagaagaaccctcctcttgattcattctacttacacaccagttacatggagacattgccttacaatac-T----------C--------CTA-ACAAAATGT---TATC-----ATTAGAAACA-AT
gi|3 : ttacaataggaaaacatttttcaatggtgaccttgaccacatatatacatgtcgccatatagaatgccagcctgcctcaatgaagcctatccatgaaccaagtgccatgacagtatttcatAA-GT---GACA---ATGTCTGAAAAATATTTTTTCTA-T-T--T-AT-AGCAA-CAG--T----GA--C-CTTG------------------------------------------AC-C-TTC-TCCCCATCCAGTCTAAACACACATCAAGTTTTCA-GG-------------CAATATCTTACTCCTGACATAA-G---TTATCAG------T--C-----TGAAACCAACAAAAGT-TCTCAAACCGAAACCATTTTT-----TTTCTTCTAATTTTAGCAACA--GT----GACCTTGACCTTAATTCCAGTAGCCCAAATATT---C-----CC---AACC-TTCATC-CCATCCAGTCTAACAACCACACA-CCAAATT-CATGGCAAgcaatgagacagaaaaggatg
gi|10 : tgagtccattgtcatgataagggtgagttatcaaccaaatgtttgctccgaaaacaacataaaagagaaacacaactaggcttaggatgcaaaatAA-GT---TATC---A-ATCTGAAACC-ATTTTT-CTA-T-T------------------------------TTAACACCA-------G-TAGC-C--CC-A---TAAACAACTCCAAC-C-TCCCTCTATATCCAGTATACattca
gi|8 : accaaatggctggatgccatcgggcccattgtcatggtagaggtaattcatcaaccggttaagtataagtgaaaccacagcatgttattttgtagaatctaagatacatacacccaccatgtcttgtagtTTTATA-TATATT---TAGCTA-CAA--T----GA--C-CATTACCCCA-------G-T-AG-C--CC-AA--TGTACAATCCCAAC-C-TTTCTCTGCATCAAGTCTACTCACACACCAAG-TTTTATGG-------------GAATTTCTCACTCCTAATGAAA-T---TTATCAGACGAAAA--C-----TGT------------T-TTT---------TCTAATTTT-----TA-------------GCAATGGTGAGCTTGACTTTGAC------TCAAGTGACAC-TATATA---CAAT-TCCA--AAAC-TTCCTCTCCATCTAGTCT-AC--CCACAGAT
gi|15 : TTTCTA-T-TATT-AGTAAC-A-ATG--TCCATGA--CATTTTACCCCA-------G-T-GA-T--CCTA---TATACATTACCAAC-C-TTTATCTCTATCTAGTCTATCaagttgtat
gi|11 : gtgTT-TTCAATG----G--T----GA--C-CTTGACCACATATATACA-T-GT-CG-CC-A---TATAGAATGCCAGC-C-TGCCT--CAATGAAGCCTATCCATGAACCAAG-TGCCATGA-------------CAGTATTTCATTCCTAACAAAATG---TTATCAagcaaacga
gi|6 : ttacaataggaaaacatAAC-C-CTCCTCTTGATTCATTCTACTTACACACC-AG-TTACATGGAGACATTGCCTTACAAT-ACTCCTT----ACAAAA-GTAATTATCAA------T--G-----GGAAG----------C-CATT---TT---TCTA-TTTT-----AA-------------GCAATG--GT----GACCTTGAC------CCCAGAAGCCC-CATAT-----GA--AATA--------------CCATCCAGTCT-AC--CTACA-A----GTTT-CATGACttagaaacaatgcaatgagacagaaaaggatg
gi|7 : cccatcaaacagctggttgccattgagtccaatgccaagatagggatgattaatcaatgggttttgtgttactaaacaatagaag-------------CAATATCTCACTCATAATAAAA-G---TTATCAG------T--C-----CAAAA----------C-AATT---TT---TCTA-TTTT-----TA-------------GCAATG--GT----GACCTTGAC-------CAAGTGAC---AGTATTA--TAC--ATTACTGACC-TTCCTCTCCATCC-----------TACATACCATGTTT-CATGGAAATATCTCATTCCCAAC-AAAA-GTTAC----CAGT-TGAAATACAAAAGGATGGGATGTGATTCCCACAA----TGT-CAGAGCCC---CCAT--CTG-----ACCC--CAAAC--CTTGTTTT-CTGGGTTTTGAAAATAATTA
gi|4 : CTCAATCTTGATAGAA-G---TTATCAG------T--CAAAAACCA------------T-TTTT---CC---TC----TTT-----TA-------------GCAATG--GT----GACCTTGAC--------------CCC-GATATA---CAA--TCCC--AAGTATTCCTCTCCATCCAGTCT-AC--CAG--------GTTT-CATGACAATATTTGATTCTAAAC-AAAA-GTTATATAATAGT-TGAAACACAAAGGGATGGG
gi|2 : ctcctatcaaacagctgtttgaggtcattcacaataggaaggaggggtggggggggagctttattaacaggttttgtataactaaagtaatagcagataagacgccgtggttgcaatgctaattcatacttttcgccagattctttaaatataatattttgggaggaggacgtaagcttgttactatttatatctTGTCA----------C-----TGA------------TCTAAC---CT---TTTCCTTTT-----TTTA-----------ACAATG--GT----GTCTTTGCC------CTCTGTGACCT-TATATTATGCAA--TCCC--AACC-GTCATCTCCATTAAGTCT-AC--CCACATACCAAATAT-CGTGGCAAT
gi|8 : aaaaacaacctatccctaacagtgagtgacacctccaccaaacagctgtttgacattatgcccactctcatgatgtggatgatttatcaatcagcttcgtgtcacaaaacgattggggacagacacttactatgcttaaagcttgccaaattttgtattcatgcgctatttagccaaattttgtattcaggaacattattttaatatatatatacatgtaataattcagggaagatgacttaagcttgttatttttatatcTT-----TA-------------GCTACA--AT----GACCATTAC------CCCAGTAGCCC-AATGTA---CAA--TCCC--AACC-TTTCTCTGCATCAAGTCT-AC--TCACACACCAAGTTT-TATGGGAATTTCTCACTCCTAAT-GAAA-TTTAT----CAGA-CG-AAAAC
gi|12 : tttatatataCCTTGAC------CCCAGTGACCC-AATATA---CAA--TCCT--AACC-TTCCTCTCCATTCAGTtgttttttctaatttttagcaatggtgagcttgactttgactcaagtgacactatatacaattccaaaacttcctctccatctagtctacccacagataagttgtat
gi|3 : aagtatattatttaatatagttcagggaatatgattttcatgcttgttatatttatatctctcactcccaacaaaggtcatctgcagtcagaaacagtttttACC-TTC-TCCCCATCCAGTCT-AA--ACACACATCAAGTTTTCA-GGCAATATCTTACTCCTGAC-ATAA-GTTAT----CAGTCTG-AAACCAACAAAAa
gi|11 : tgagtccattgtcatgataagggtgagttatcaaccaaatgtttgctccgaaaacaacataaaagagaaacacaactaggcttaggatgcaaaataagtgacaatgtctgaaaaatattttttctatttatagcaacagtgaccttgAGCCT-AT--CCATGAACCAAGTGC-CATGACAGTATTTCATTCCTAAC-AAAATGTTAT----CATT-AG-AA-ACAATGCAATGAGgttctcaaaccgaaaccattttttttcttctaattttagcaacagtgaccttgaccttaattccagtagcccaaatattcccaaccttcatcccatccagtctaacaaccacacaccaaattcatggcaaattca
gi|9 : ttacaataggaaaacatttttcaatggtgaccttgaccacatatatacatgtcgccatatagaatgccagcctgcctcaatgaTACCTCACTTTTAAC-AAAA-ATTAT----CAGT-TG-GAAACacagaaaaggatg
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): ACCATTAGAAGTTTAAGCTTATAAACCAGATCACTTTTTCTTTTAATAGCAACAGTGACCTTGACCTTAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111
lowQualScore : 22 44444444444444 111111 1111111 111111111 111111 22222222 111111 33333333333333333 1111 333333333333333 000000000000000000000000000000000000000000000000 111 1111 1111111 3333333333 111 11111 555555555555555555555555 2222222222 2222222222222 1111111111111111 1111 1 1 1 11 4444 2 333 22 55555 22 22 2 3333333
lowQualScore : 77 22 1 333 1 0 8 6 22222222222222 5 8 222222 0 4 4444444 777 777777777 1 0 111111 9 22222222 111111 6 3 6 99999999999999999 2222 777 111111111111111 66 888 222222222222222222222222222222222222222222222222 1 3 5 000 1111 888 7 666 3 55 777 1 3333333 1 7777777777 4 2 4 0 4 11 2 7 5 000 44444 1 555555555555555555555555 888 77 4 5555555555 6 5 5 33 6666666666666 7777777777777777 66 5 77 0000 2 5 66 88 5 66 1 3 3 1 55 1 0 0 6 3 44 0 0 77 2222 0 555 77 00000 77 77 0 3333333
lowQualScore : .. .. . ... . . . . .............. . . ...... . . ....... ... ......... . . ...... . ........ ...... . . . ................. .... ... ............... .. ... ................................................ . . . ... .... ... . ... . .. ... . ....... . .......... . . . . . .. . . . ... ..... . ........................ ... .. . .......... . . . .. ............. ................ .. . .. .... . . .. .. . .. . . . . .. . . . . . .. . . .. .... . ... .. ..... .. .. . .......
lowQualScore : 55 00 0 000 0 7 0 7 77777777777777 0 9 888888 1 4 4444444 888 888888888 9 3 555555 3 77777777 888888 7 7 7 33333333333333333 1111 444 222222222222222 99 000 777777777777777777777777777777777777777777777777 0 6 7 000 9999 888 4 888 5 22 000 0 0000000 1 9999999999 4 1 1 1 0 66 8 1 7 000 33333 7 000000000000000000000000 888 99 0 4444444444 3 0 0 88 0000000000000 2222222222222222 00 0 22 6666 8 0 99 88 0 99 7 0 0 7 22 2 0 0 7 3 33 7 7 55 5555 0 000 55 00000 55 55 0 0000000
consensus : NAACACAACTAGACCTATCACTGAAAGTGATTGATACC-CC-ACCAAACAGC------T-------A-TC-GA------GTCCATTGTCACGATAGG-------GG---TGA---------TTTATCAACGGGTTTTGTGTTACTAAAACAATAGCA-ATAGGGACAC-------ACA---A--C-TAGGCC-TAG-------G-TGC-----TTAG----GTACATTATT-TTAATATA---------------AT--TCAGGGAAGATGATTT--AAGC----T----A-TATTTA------T-----T--A-TC-----CT----AACAAAAG-TTAT---CAGTC-G--GA---AACCGTTTTT--TCTATT-TTTAGCAACG---GTGACC-------TTGACCCCAGTGACCC---A-T-ATACAATCCCAACC-TTCCTCTCCATCCAGTCTACCCACACACCAAGTTT-CATGGCAATAT---CTCAC-----TCCT------------------------AACAAAAGT---TATCAGT--CCGAAA------CTA-TTTTTCT-A-TTTTTAGCAACGG------T------GACCTTGACC------CCA-------GTGGCCC-CAT-ATACAA-TC-CNAAC-CTTC--CTCTCCATCCAGTCT-AC--CCACACACCAAGTTTCATGGCAATATCTCATTCCTAAC-AAAA-GTTATCAGTTGAAA-ACAACGGAATGAGATGCGATTCCCACAAAGTTTGTACAGAGCCCCAACCATGCCTGCCCCCACCCTGCAAACCTCTTGTTTTGCTGGGTTTTGAAAATAATTA
Reference ( family-1096 ) : NAACACA--TAGACNNATCNCTGNNNGTGANTGACACC-CC-ACCAAACAGC------T-------A-TC-GA------GTCCATTGTCACGATAGG-------GG---TGA---------TTTATCAACGGGTTTTGTGTTACTAAAACAATAGCA-ATAGGGACAN-------ACA---A--C-TAGGCC-TAG-------G-TGC-----TTAG----GTACATTATT-TTAATATA---------------AT--TCAGGGAAGATGATTT--AAGC----T----A-TATTTA------T-----T--A-TC-----CT----AACAAAAG-TTAT---CAGTC-G--GA---AACCGTTTTT--TCTATT-TTTAGCAACG---GTGACC-------TTGACCCCAGTGACCC---A-T-ATACAATNCCAACC-TTCCTCTCCATCCAGTCTACCCACANACCAAGTTT-CATGGCAATAT---CTCAC-----TCCT------------------------AACAAAAGT---TATCAGT--CCGAAA------TTA-TTCTTCT-A-TTTTTAGCAACGG------T------GACCTTGACC------CCA-------GTGGCCC-NAT-ATNCAA-TC-CNAAC-CTTC--CTCTCCATCCAGTCT-AC--CCACACACCAAGTTTCATGGCAATATCTCACTCCTAAC-AAAA-GTTATCAGTTGAAA-ACAACGGGATGGGATGTGATTCCCACAA----TGT-CAGAGCCC---CCAT--CTG-----ACCC--CAAAC--CTTGTTTT-CTGGGTTTTGAAAATAATTA
gi|1 : AATACAACTAGATCTATCACTGAAAGTCATTCATACC-CC-ACCAAACAGC------T-------A-TC-GG------GTCCATTGTCAAAATAGG-------GG---TGA---------TTTTTCAATGGGTTTTGTGTTACTAAAACAATGGCA-ATAGGGACAT-------ACA---A--C-TAGATC-TAG-------GTTGC-----TTAG----GTACATTATT-TTAATATA---------------AT--TCAGGGAAGATGATTT--CAGC----T----A-CATGTAG-----T-----T--A-TC-----CT----AACAAAAG-TTAC---CAATC-A--GA---AACAATTTTT--TCTATT-ATTATTAATGAAAGTGACC-------TTGACCCCAGTGACTC---A-T-ATACAATCCCAACC-TTCCTTTCTATCCAGTCTACCCTCACACCAAGTTT-CATGGCAATAA---CTCAT-----TCAT------------------------GACCAAAGT---TGTCAGT--CTG--A------TTA-TCCCCCC-ACTTTTTTGCAACAG------A------GACCTTGACT------CCA-------GTGACCC-AAT-ATTCAA-AC-TAAAC-TTTC--CTCTCCTTCCAGTCT-AC--CCACACATCCTGTTTCATGGCAATATCTTATTCATAAC-AAAA-GTTATCAGTTGAAC-ACAACAGAATGAGCTGCGATT--CACAAAGTTTGTATAAAGCCCCAACCATGCCTGCCCCCACCCTGCAAACCTCTTGTTTTGTTGGGT-------ATAATTA
gi|10 : g-ACCAAATGGC------TGGATGCCA-TC-GG------GCCCATTGTCATGGTAGA-------GG---TAA---------TTCATCAACCGGTTAAGTATAAGTGAAACCACAGCA-t
gi|10 : AAGT---TATCAAT--CTGAAA------CCA-TTTTTCT-A-TTTT----AACA------------------------------CCA-------GTAGCCC-CAT-AAACAA-CT-CCAAC-CTCC--CTCTATATCCAGTAT-AC--tgttattttgtagaatctaagatacatacacccaccatgtcttgtagtaagttatcaatctgaaaccatttttctattttaacaccagtagccccataaacaactccaacctccctctatatccagtatac
gi|11 : accaaatggctggatgccatcgggcccattgtcatggtagaggtaattcatcaaccggttaagtataagtgaaaccacagcatgttattttgtagaatctaagatacatacacccaccatgtcttgtagt-A-TTTTT--CAATGG------T------GACCTTGACC------ACATATATACATGTCGC-CAT-ATAGAA-TG-CCAGC-CTGC--CTC--AATGAAGCCT-AT--CCATGAACCAAGTGCCATGACAGTATTTCATTCCTAAC-AAAATGTTATCA-TTAGAA-ACAATGCAATGAGA
gi|12 : ttacaataggaaaacAA----GTATATTATT-T-AATATA---------------GT--TCAGGGAATATGATTTTCATGCTTGTT----A-TATTTATATCTCT-----C--ACTC-----CC----AACAAAGG-TCATCTGCAGTC-A--GA---AACAGTTTTT--------------------------CC-------TTGACCCCAGTGACCCA--A-T-ATACAATCCTAACC-TTCCTCTCCATTCAGTcagaaaaggatg
gi|13 : AACACA--TAGACAAATCATTGTATGTGATTGATATC-CCAACCAAACAGCCGGTTGT-------AGTC-TA------GTCCATTGTCATGATAGC-------GG-------------------TCAAAGGGTACTGTGTTATTAAAATAATAGa
gi|14 : TTTATGTTACTATAACAAT------TAAG-AGAA-------ACA---A--C-TTGGCC-TAGTTGGCTAA-TGCAAACTTTAGCCATATACATTACT-TCAATACA---------------AT--TCAGGGAAGATGATTT--AAGaa
gi|15 : TT--TCTATT-ATTAGTAACA---ATGTCCATGACATTTTACCCCAGTGATCCT--A-T-ATACATTACCAACC-TTTATCTCTATCTAGTCTATCAGCAAAC
gi|16 : gtg-------A-TT-GA------GTCAATTGTCATGATAGG-------AG---AGA---------TTTATCAACAGGTTTTGTGTAAGTATTACAGTAga
gi|17 : aaatggctggttgtcAAGCTTAT---AAACC-A--GA-----TCACTTTT--TCTTTT-AATAGCAACA---GTGACC-------TTGACCcatta
gi|18 : accattagaagtttAG----GTACATTATC-TTAATATA---------------AT--TCAGGGAAGATGAttaa
gi|2 : ACCTATCCCTAACAGTGAGTGACACCTCC-ACCAAACAGC------T-------G-TTTGACATTATGCCCACTCTCATGATGTG-------GA---TGA---------TTTATCAATCAGCTTCGTGTCAC-AAAACGAT------TGGGGACAG-------ACACTTA--C-TATGCT-TAA-------A--GC-----TT
gi|2 : aaaaaca-------G-TAT-----TCAG----GAACATTATT-TTAATATATATATACATGTAATAAT--TCAGGGAAGATGACTT--AAGC----T----------TG------T-----T--A-TT-----TT----TA--------TAT---CTGTC-ACTGATCTAACC--TTTT--CCTTTT-TTTAACAATG---GTGTCT-------TTGCCCTCTGTGACCTTATA-TTATGCAATCCCAACC-GTCATCTCCATTAAGTCTACCCACATACCAAATAT-CGTGGCAATgccaaattttgtattcatgcgctatttagccaaattttgtattcaggaacattattttaatatatatatacatgtaataattcagggaagatgacttaagcttgttatttttatatctgtcactgatctaaccttttcctttttttaacaatggtgtctttgccctctgtgaccttatattatgcaatcccaaccgtcatctccattaagtctacccacataccaaatatcgtggcaat
gi|3 : aaaaacaacctatccctaacagtgagtgacacctccaccaaacagctgtttgacattatgcccactctcatgatgtggatgatttatcaatcagcttcgtgtcacaaaacgattggggacagacacttactatgcttaaagcttgccaaattttgtattcatgcgctatttagccaaatttt-GA------GTCCATTGTCATGATAAG-------GG---TGA---------GTTATCAACCAAATGTTTGCTCCGAAAACAACA-TA-AAAGAGAAAC-------ACA---A--C-TAGGCT-TAG-------GATGC-----
gi|3 : tGTCTG--AA---AAATATTTTT--TCTATT-TATAGCAACA---GTGACC-------TTGAC-------------------------------C-TTC-TCCCCATCCAGTCTAAACACACATCAAGTTTTCA-GGCAATAT---CTTAC-----TCCTGACATAAGTTATCAGTCTGAAACCAACAAAAGT---TCTCAAA--CCGAAACCATTTTTT-TTCTTCT-A-ATTTTAGCAACAG------T------GACCTTGACCTTAATTCCA-------GTAGCCCAAAT-AT-----TC-CCAAC-CTTC--ATC-CCATCCAGTCTAACAACCACACACCAAA-TTCATGGCAAaaaataagtgacaatgtctgaaaaatattttttctatttatagcaacagtgaccttgaccttctccccatccagtctaaacacacatcaagttttcaggcaatatcttactcctgacataagttatcagtctgaaaccaacaaaagttctcaaaccgaaaccattttttttcttctaattttagcaacagtgaccttgaccttaattccagtagcccaaatattcccaaccttcatcccatccagtctaacaaccacacaccaaattcatggcaaattca
gi|4 : tgagtccattgtcatgataagggtgagttatcaaccaaatgtttgctccgaaaacaacataaaagagaaacacaactaggcttaggatgcaaaataagtgacaatC-CT-ATCAAACAGC------T-------G-TTTGA------GGTCATT--CACAATAGGAAGGAGGGG---TGGGGGGGGAGCTTTATTAACAGGTTTTGTATAACTAAAGTAATAGCAGATAAG-ACGCCGTGGTTGCA---ATGC-TAATTCATAC-------T-T-------TTCG----CCAGATTCTT-TAAATATA---------------ATATTTTGGGAGGAGGACGT--AAGC----TTGTTACTATTTA------TATCTCTCAA-TC-----TT----GATAGAAG-TTAT---CAGTC-A--AA---AACCATTTTT--CCT-CT-TTTAGCAATG---GTGACC-------TTGACCCCG----------A-T-ATACAATCCCAAGTATTCCTCTCCATCCAGTCTACC--------AGGTTT-CATGACAATAT---TTGAT-----TCTA------------------------AACAAAAGT---TATattca
gi|5 : ctTATTGTTAATATA---------------AT--TCAAGGCATATGATTC--AAGT----TTGTTA-TGTTTA------T--------A-TCTCTCGCTCGTAGACAAG-G-TTAC---CAGTG-G--GA---AACCGTT--------ATTGTTTAGCAACG---ATGACC-------TT-ATTTTTGT--------A-T-ATACATTATGAAGC-TTTCTTCCTGTTCTTTCT---CAGAAAACA------CATAGCAGTAT---TTCAC-----TCTT------------------------AACAAAAGT---TTTCCGTGTTTGAAACC----TTA-TT-TTCC-A-GTTCTAATAACTG------TAATATTGACCTTGATC------CCA-------GTGGCCC-TAC-ATGTAA-TCACAAACTCTTCAATTTT---TTTAGTCT-AC--CCATACACCAAGATTAATGGCAATATCTC-CTCCAAATAAAAA-GTTATCAataatagttgaaacacaaagggatggg
gi|6 : tatattaaccaC-CC-ATCAAACAGC------TGGTTGCCA-TT-GA------GTCCAATGCCAAGATAGG-------GA---TGA---------TTAATCAATGGGTTTTGTGTTACT-AAACAATAGa
gi|6 : AACC-CTCCTCTTGATTCATTCTACTTACACACCA-GTTA-CATGGAGACATTGCCTTACAATACTCCT------------------------TACAAAAGTAATTATCAAT--GGGAAG------CCA-TTTTTCT-A-TTTTAAGCAATGG------T------GACCTTGACC------CCA-------GAAGCCC-CAT-ATGAAA-T----A-------------CCATCCAGTCT-AC--CTA-----CAAGTTTCATGACaagaaccctcctcttgattcattctacttacacaccagttacatggagacattgccttacaatactccttacaaaagtaattatcaatgggaagccatttttctattttaagcaatggtgaccttgaccccagaagccccatatgaaataccatccagtctacctacaagtttcatgac
gi|7 : cccatcaaacagctggttgccattgagtccaatgccaagatagggatgattaatcaatgggttttgtgttactaaacaatagaagCAATAT---CTCAC-----TCAT------------------------AATAAAAGT---TATCAGT--CCAAAA------CAA-TTTTTCT-A-TTTTTAGCAATGG------T------GACCTTGACC------A-A-------GTGACAG-TATTATACAT-TA-CTGAC-CTTC--CTCTCCATCC-----------TACATACCATGTTTCATGGAAATATCTCATTCCCAAC-AAAA-GTTACCAGTTGAAATACAAAAGGATGGGATGTGATTCCCACAA----TGT-CAGAGCCC---CCAT--CTG-----ACCC--CAAAC--CTTGTTTT-CTGGGTTTTGAAAATAATTA
gi|8 : TTTA--TATATA-TTTAGCTACA---ATGACC-------ATTACCCCAGTAGCCC---AAT-GTACAATCCCAACC-TTTCTCTGCATCAAGTCTACTCACACACCAAGTTT-TATGGGAATTT---CTCAC-----TCCT------------------------AATGAAATT---TATCAGA--CGAAAA------CTGTTTTTTCTAA-TTTTTAGCAATGGTGAGCTT------GACTTTGACT------CAA-------GTGACAC-TAT-ATACAATTC-CAAAA-CTTC--CTCTCCATCTAGTCT-AC--CCACAGA-TAAGTT
gi|9 : -------A-TC-AA------GTCCATCATCACAAAAGG-------GAGTATGA---------TATATTACTGGGTTTTGTGTTACCAAAACAGTAGAA-GAAGAAACAC-------ACA---A--CTTAGG-C-TAG-------C-TGC-----TAA------TAT-TTATT-------------------------T--TCAGCCA----GATT----ACC----T------CACTT-------------------------TT----AACAAAAA-TTAT---CAGTT-G--GA---AACCTTTTTTTATTTATA-TTAAGTAATG---AT-CCC-------TTGATCCCAGT----------T-A---------AACT-TTTCTCTCCATCCAGTgtat
Alignments
lowQualScore : 111111111111111111111111111111111111111
lowQualScore : 11 44444444444444 111111 1111111 111111111 111111 22222222 111111 33333333333333333 1111 333333333333333 111111111111111111111111111111111111111 111 1111 1111111 3333333333 111 11111 555555555555555555555555 111111 2222222222222 111111 1111111 1111 1 1 1 11 2222 1 222 11 22222 11 11 1 3333333
lowQualScore : 88 8 6 22222222222222 5 8 222222 0 4 4444444 777 777777777 1 0 111111 9 22222222 111111 6 3 6 99999999999999999 2222 777 111111111111111 66 888 111111111111111111111111111111111111111 1 3 5 000 1111 888 7 666 3 55 777 1 3333333 1 7777777777 4 2 1 0 4 11 1 7 5 000 44444 1 555555555555555555555555 888 77 4 999 5 666666 55 5 33 6666666666666 1 444444 6666666 2 5 0 0000 2 5 66 88 11 5 66 1 3 3 1 3 1 0 0 6 3 44 77 4444 5 111 77 55555 88 88 5 3333333
lowQualScore : .. . . .............. . . ...... . . ....... ... ......... . . ...... . ........ ...... . . . ................. .... ... ............... .. ... ....................................... . . . ... .... ... . ... . .. ... . ....... . .......... . . . . . .. . . . ... ..... . ........................ ... .. . ... . ...... .. . .. ............. . ...... ....... . . . .... . . .. .. .. . .. . . . . . . . . . . .. .. .... . ... .. ..... .. .. . .......
lowQualScore : 00 0 7 77777777777777 0 9 888888 1 4 4444444 888 888888888 9 3 555555 3 77777777 888888 7 7 7 33333333333333333 1111 444 222222222222222 99 000 777777777777777777777777777777777777777 0 6 7 000 9999 888 4 888 5 22 000 0 0000000 1 9999999999 4 1 1 1 0 66 4 1 7 000 33333 7 000000000000000000000000 888 99 0 000 7 444444 11 0 88 0000000000000 4 444444 2222222 2 0 2 6666 8 0 99 88 66 0 99 7 0 0 7 2 2 0 0 7 3 33 55 0000 5 000 55 00000 00 00 0 0000000
consensus : NAACACAACTAGACCTATCACTGAAAGTGATTGATACC-CCA-CCAAACAGC------T-------A-TC-GA------GTCCATTGTCACGATAGG-------GG---TGA---------TTTATCAACGGGTTTTGTGTTACTAAAACAATAGCA-ATAGGGACAC-------ACA---A--C-TAGGCC-TAG-------G-TGC-----TTAG----GTACATTATT-TTAATATA---------------AT--TCAGGGAAGATGATTT--AAGCTTGTTA-TATTTA-T------T--A-TC-----CT----AACAAAAG-TTATC---AGTC-G--GA---AACCGTTTTT--TCTATT-TTTAGCAACG---GTGACC-------TTGACCCCAGTGACCC---A-T-ATACAATCCCAACC-TTCCTCTCCATCCAGTCTACCCACACACCAAGTTT-CATGGCAATAT---CTCAC-----TCCT------------------------AACAAAAGT---TATCAGT--CCGAAAC--CA-TTTTT------CT-A-TTTTTAGCAACGG------T------GACCTTGACC------CCA-------GTGGCCCCA-TATACAA-TC-CNAAC-CTTC--CTCTCCATCCAGTCT-AC--CCACACACCAAGTTTCATGGCAATATCTCATTCCTAAC-AAAA-GTTATCAGTTGAAA-ACAACGGAATGAGATGCGATTCCCACAAAGTTTGTACAGAGCCCCAACCATGCCTGCCCCCACCCTGCAAACCTCTTGTTTTGCTGGGTTTTGAAAATAATTA
Reference ( family-1096 ) : NAACACAACTAGACCTATCACTGAAAGTGATTGATACC-CCA-CCAAACAGC------T-------A-TC-GA------GTCCATTGTCACGATAGG-------GG---TGA---------TTTATCAACGGGTTTTGTGTTACTAAAACAATAGCA-ATAGGGACAC-------ACA---A--C-TAGGCC-TAG-------G-TGC-----TTAG----GTACATTATT-TTAATATA---------------AT--TCAGGGAAGATGATTT--AAGCT----A-TATTTA-T------T--A-TC-----CT----AACAAAAG-TTATC---AGTC-G--GA---AACCGTTTTT--TCTATT-TTTAGCAACG---GTGACC-------TTGACCCCAGTGACCC---A-T-ATACAATCCCAACC-TTCCTCTCCATCCAGTCTACCCACACACCAAGTTT-CATGGCAATAT---CTCAC-----TCCT------------------------AACAAAAGT---TATCAGT--CCGAAAC--TA-TTTTT------CT-A-TTTTTAGCAACGG------T------GACCTTGACC------CCA-------GTGGCCCCA-TATACAA-TC-CNAAC-CTTC--CTCTCCATCCAGTCT-AC--CCACACACCAAGTTTCATGGCAATATCTCATTCCTAAC-AAAA-GTTATCAGTTGAAA-ACAACGGAATGAGATGCGATTCCCACAAAGTTTGTACAGAGCCCCAACCATGCCTGCCCCCACCCTGCAAACCTCTTGTTTTGCTGGGTTTTGAAAATAATTA
gi|1 : AATACAACTAGATCTATCACTGAAAGTCATTCATACC-CCA-CCAAACAGC------T-------A-TC-GG------GTCCATTGTCAAAATAGG-------GG---TGA---------TTTTTCAATGGGTTTTGTGTTACTAAAACAATGGCA-ATAGGGACAT-------ACA---A--C-TAGATC-TAG-------GTTGC-----TTAG----GTACATTATT-TTAATATA---------------AT--TCAGGGAAGATGATTT--CAGCT----A-CATGTAGT------T--A-TC-----CT----AACAAAAG-TTACC---AATC-A--GA---AACAATTTTT--TCTATT-ATTATTAATGAAAGTGACC-------TTGACCCCAGTGACTC---A-T-ATACAATCCCAACC-TTCCTTTCTATCCAGTCTACCCTCACACCAAGTTT-CATGGCAATAA---CTCAT-----TCAT------------------------GACCAAAGT---TGTCAGT--CTG--AT--TA-TCCCC------CC-ACTTTTTTGCAACAG------A------GACCTTGACT------CCA-------GTGACCCAA-TATTCAA-AC-TAAAC-TTTC--CTCTCCTTCCAGTCT-AC--CCACACATCCTGTTTCATGGCAATATCTTATTCATAAC-AAAA-GTTATCAGTTGAAC-ACAACAGAATGAGCTGCGATT--CACAAAGTTTGTATAAAGCCCCAACCATGCCTGCCCCCACCCTGCAAACCTCTTGTTTTGTTGGGT-------ATAATTA
gi|10 : gA-CCAAATGGC------TGGATGCCA-TC-GG------GCCCATTGTCATGGTAGA-------GG---TAA---------TTCATCAACCGGTTAAGTATAAGTGAAACCACAGCA-t
gi|10 : AAGT---TATCAAT--CTGAAAC--CA-TTTTT------CT-A-TTTT----AACA------------------------------CCA-------GTAGCCCCA-TAAACAA-CT-CCAAC-CTCC--CTCTATATCCAGTAT-AC--tgttattttgtagaatctaagatacatacacccaccatgtcttgtagtaagttatcaatctgaaaccatttttctattttaacaccagtagccccataaacaactccaacctccctctatatccagtatac
gi|11 : accaaatggctggatgccatcgggcccattgtcatggtagaggtaattcatcaaccggttaagtataagtgaaaccacagcatgttattttgtagaatctaagatacatacacccaccatgtcttgtagt-A-TTTTT--CAATGG------T------GACCTTGACC------ACATATATACATGTCGCCA-TATAGAA-TG-CCAGC-CTGC--CTC--AATGAAGCCT-AT--CCATGAACCAAGTGCCATGACAGTATTTCATTCCTAAC-AAAATGTTATCA-TTAGAA-ACAATGCAATGAGA
gi|12 : ttacaataggaaaacAA----GTATATTATT-T-AATATA---------------GT--TCAGGGAATATGATTTTCATGCTTGTTA-TATTTA-TATCTCTC--ACTC-----CC----AACAAAGG-TCATCTGCAGTC-A--GA---AACAGTTTTT--------------------------CC-------TTGACCCCAGTGACCC---AAT-ATACAATCCTAACC-TTCCTCTCCATTCAGTcagaaaaggatg
gi|13 : AACACA--TAGACAAATCATTGTATGTGATTGATATC-CCAACCAAACAGCCGGTTGT-------AGTC-TA------GTCCATTGTCATGATAGC-------GG-------------------TCAAAGGGTACTGTGTTATTAAAATAATAGa
gi|14 : TTTATGTTACTATAACAAT------TAAG-AGAA-------ACA---A--C-TTGGCC-TAGTTGGCTAA-TGCAAACTTTAGCCATATACATTACT-TCAATACA---------------AT--TCAGGGAAGATGATTT--AAGaa
gi|15 : TT--TCTATT-ATTAGTAACA---ATGTCCATGACATTTTACCCCAGTGATCCT--A-T-ATACATTACCAACC-TTTATCTCTATCTAGTCTATCAGCAAAC
gi|16 : gtg-------A-TT-GA------GTCAATTGTCATGATAGG-------AG---AGA---------TTTATCAACAGGTTTTGTGTAAGTATTACAGTAga
gi|17 : aaatggctggttgtcAAGCTTATA---AACC-A--GA-----TCACTTTT--TCTTTT-AATAGCAACA---GTGACC-------TTGACCcatta
gi|18 : accattagaagtttAG----GTACATTATC-TTAATATA---------------AT--TCAGGGAAGATGAttaa
gi|2 : ACCTATCCCTAACAGTGAGTGACACCTCCA-CCAAACAGC------T-------G-TTTGACATTATGCCCACTCTCATGATGTG-------GA---TGA---------TTTATCAATCAGCTTCGTGTCAC-AAAACGAT------TGGGGACAG-------ACACTTA--C-TATGCT-TAA-------A--GC-----TT
gi|2 : aaaaaca-------G-TAT-----TCAG----GAACATTATT-TTAATATATATATACATGTAATAAT--TCAGGGAAGATGACTT--AAGCT----------TG-T------T--A-TT-----TT----TA--------TATC---TGTC-ACTGATCTAACC--TTTT--CCTTTT-TTTAACAATG---GTGTCT-------TTGCCCTCTGTGACCTTATA-TTATGCAATCCCAACC-GTCATCTCCATTAAGTCTACCCACATACCAAATAT-CGTGGCAATgccaaattttgtattcatgcgctatttagccaaattttgtattcaggaacattattttaatatatatatacatgtaataattcagggaagatgacttaagcttgttatttttatatctgtcactgatctaaccttttcctttttttaacaatggtgtctttgccctctgtgaccttatattatgcaatcccaaccgtcatctccattaagtctacccacataccaaatatcgtggcaat
gi|3 : aaaaacaacctatccctaacagtgagtgacacctccaccaaacagctgtttgacattatgcccactctcatgatgtggatgatttatcaatcagcttcgtgtcacaaaacgattggggacagacacttactatgcttaaagcttgccaaattttgtattcatgcgctatttagccaaatttt-GA------GTCCATTGTCATGATAAG-------GG---TGA---------GTTATCAACCAAATGTTTGCTCCGAAAACAACA-TA-AAAGAGAAAC-------ACA---A--C-TAGGCT-TAG-------GATGC-----
gi|3 : tGTCTG--AA---AAATATTTTT--TCTATT-TATAGCAACA---GTGACC-------TTGAC-------------------------------C-TTC-TCCCCATCCAGTCTAAACACACATCAAGTTTTCA-GGCAATAT---CTTAC-----TCCTGACATAAGTTATCAGTCTGAAACCAACAAAAGT---TCTCAAA--CCGAAAC--CA-TTTTTTTTCTTCT-A-ATTTTAGCAACAG------T------GACCTTGACCTTAATTCCA-------GTAGCCCAA--ATAT---TC-CCAAC-CTTC--ATC-CCATCCAGTCTAACAACCACACACCAAA-TTCATGGCAAaaaataagtgacaatgtctgaaaaatattttttctatttatagcaacagtgaccttgaccttctccccatccagtctaaacacacatcaagttttcaggcaatatcttactcctgacataagttatcagtctgaaaccaacaaaagttctcaaaccgaaaccattttttttcttctaattttagcaacagtgaccttgaccttaattccagtagcccaaatattcccaaccttcatcccatccagtctaacaaccacacaccaaattcatggcaaattca
gi|4 : tgagtccattgtcatgataagggtgagttatcaaccaaatgtttgctccgaaaacaacataaaagagaaacacaactaggcttaggatgcaaaataagtgacaatC-CTA-TCAAACAGC------T-------G-TTTGA------GGTCATT--CACAATAGGAAGGAGGGG---TGGGGGGGGAGCTTTATTAACAGGTTTTGTATAACTAAAGTAATAGCAGATAAG-ACGCCGTGGTTGCA---ATGC-TAATTCATAC-------T-T-------TTCG----CCAGATTCTT-TAAATATA---------------ATATTTTGGGAGGAGGACGT--AAGCTTGTTACTATTTA-TATCTC-TCAA-TC-----TT----GATAGAAG-TTATC---AGTC-A--AA---AACCATTTTT--CCT-CT-TTTAGCAATG---GTGACC-------TTGACCCCG----------A-T-ATACAATCCCAAGTATTCCTCTCCATCCAGTCTACC--------AGGTTT-CATGACAATAT---TTGAT-----TCTA------------------------AACAAAAGT---TATattca
gi|5 : ctTATTGTTAATATA---------------AT--TCAAGGCATATGATTC--AAGTTTGTTA-TGTTTA-T---------A-TCTCTCGCTCGTAGACAAG-G-TTACC---AGTG-G--GA---AACCGTT--------ATTGTTTAGCAACG---ATGACC-------TT-ATTTTTGT--------A-T-ATACATTATGAAGC-TTTCTTCCTGTTCTTTCT---CAGAAAACA------CATAGCAGTAT---TTCAC-----TCTT------------------------AACAAAAGT---TTTCCGTGTTTGAAACCTTA-TTTTC------C--A-GTTCTAATAACTG------TAATATTGACCTTGATC------CCA-------GTGGCCCTA-CATGTAA-TCACAAACTCTTCAATTTT---TTTAGTCT-AC--CCATACACCAAGATTAATGGCAATATCTC-CTCCAAATAAAAA-GTTATCAataatagttgaaacacaaagggatggg
gi|6 : tatattaaccaC-CCA-TCAAACAGC------TGGTTGCCA-TT-GA------GTCCAATGCCAAGATAGG-------GA---TGA---------TTAATCAATGGGTTTTGTGTTACT-AAACAATAGa
gi|6 : AACC-CTCCTCTTGATTCATTCTACTTACACACCA-GTTA-CATGGAGACATTGCCTTACAATACTCCT------------------------TACAAAAGTAATTATCAAT--GGGAAGC--CA-TTTTT------CT-A-TTTTAAGCAATGG------T------GACCTTGACC------CCA-------GAAGCCCCA-TATGAAA-T----A-------------CCATCCAGTCT-AC--CTA-----CAAGTTTCATGACaagaaccctcctcttgattcattctacttacacaccagttacatggagacattgccttacaatactccttacaaaagtaattatcaatgggaagccatttttctattttaagcaatggtgaccttgaccccagaagccccatatgaaataccatccagtctacctacaagtttcatgac
gi|7 : cccatcaaacagctggttgccattgagtccaatgccaagatagggatgattaatcaatgggttttgtgttactaaacaatagaagCAATAT---CTCAC-----TCAT------------------------AATAAAAGT---TATCAGT--CCAAAAC--AA-TTTTT------CT-A-TTTTTAGCAATGG------T------GACCTTGA-C------CAA-------GTGACAGTATTATACAT-TA-CTGAC-CTTC--CTCTCCAT---------C--CTACATACCATGTTTCATGGAAATATCTCATTCCCAAC-AAAA-GTTACCAGTTGAAATACAAAAGGATGGGATGTGATTCCCACAA----TGT-CAGAGCCC---CCAT--CTG-----ACCC--CAAAC--CTTGTTTT-CTGGGTTTTGAAAATAATTA
gi|8 : TTTA--TATATA-TTTAGCTACA---ATGACC-------ATTACCCCAGTAGCCC---AAT-GTACAATCCCAACC-TTTCTCTGCATCAAGTCTACTCACACACCAAGTTT-TATGGGAATTT---CTCAC-----TCCT------------------------AATGAAATT---TATCAGA--CGAAAAC--TGTTTTTT------CTAA-TTTTTAGCAATGGTGAGCTT------GACTTTGACT------CAA-------GTGACACTA-TATACAATTC-CAAAA-CTTC--CTCTCCATCTAGTCT-AC--CCACAGA-TAAGTT
gi|9 : -------A-TC-AA------GTCCATCATCACAAAAGG-------GAGTATGA---------TATATTACTGGGTTTTGTGTTACCAAAACAGTAGAA-GAAGAAACAC-------ACA---A--CTTAGG-C-TAG-------C-TGC-----TAA------TAT-TTATT-------------------------T--TCAGCCA----GATT----ACCT------CACTT---------------------TT----AACAAAAA-TTATC---AGTT-G--GA---AACCTTTTTTTATTTATA-TTAAGTAATG---AT-CCC-------TTGATCCCAGT----------T-A---------AACT-TTTCTCTCCATCCAGTgtat
Alignments
lowQualScore : 11 44444444444444 111111 1111111 111111111 111111 22222222 111111 333333333333333333 1111 333333333333333 9999999999999999999999999999999 111 1111111 3333333333 111 11111 555555555555555555555555 111111 111111 2222222222222 111111 1111111 1111 1 1 1 11 2222 1 222 11 22222 11 11 1 3333333
lowQualScore : 88 8 6 22222222222222 5 8 222222 0 4 4444444 777 777777777 1 0 111111 9 22222222 111111 6 3 6 999999999999999999 2222 777 111111111111111 66 888 6 1 5555555555555555555555555555555 5 111 777 7 8888 2 4 777 2 4444444 1 1 7777777777 4 2 1 0 4 11 1 7 5 000 44444 1 555555555555555555555555 888 77 4 999999 5 444444 4 4 2 2222222222222 0 222222 6666666 2 5 0 0000 2 5 66 88 11 5 66 1 3 3 1 3 1 0 0 6 3 44 77 4444 5 111 77 55555 88 88 5 3333333
lowQualScore : .. . . .............. . . ...... . . ....... ... ......... . . ...... . ........ ...... . . . .................. .... ... ............... .. ... . . ............................... . ... ... . .... . . ... . ....... . . .......... . . . . . .. . . . ... ..... . ........................ ... .. . ...... . ...... . . . ............. . ...... ....... . . . .... . . .. .. .. . .. . . . . . . . . . . .. .. .... . ... .. ..... .. .. . .......
lowQualScore : 00 0 7 77777777777777 0 9 888888 1 4 4444444 888 888888888 9 3 555555 3 77777777 888888 7 7 7 333333333333333333 1111 444 222222222222222 99 000 7 8 5555555555555555555555555555555 7 777 999 6 7777 0 4 888 1 4444444 1 1 9999999999 4 1 1 1 0 66 4 1 7 000 33333 7 000000000000000000000000 888 99 0 444444 0 444444 4 4 0 1111111111111 1 888888 2222222 2 0 2 6666 8 0 99 88 66 0 99 7 0 0 7 2 2 0 0 7 3 33 55 0000 5 000 55 00000 00 00 0 0000000
consensus : NAACACAACTAGACCTATCACTGAAAGTGATTGATACC-CCA-CCAAACAGC------T-------A-TC-GA------GTCCATTGTCACGATAGG-------GG---TGA---------TTTATCAACGGGTTTTGTGTTACTAAAACAATAGCA-ATAGGGACAC-------ACA---A--C-TAGGCC-TAG-------G-T-GC-----TTAG----GTACATTATT-TTAATATA---------------AT--TCAGGGAAGATGATTT--AAGCTTGTTA-TATTTA------T-----T--A-TC-----CT----GACAAAAGTTAC---CAGTC-GGAAACCGTTTTT--TCTATT-TTTAGCAACG---GTGACC-------TTGACCCCAGTGACCC---A-T-ATACAATCCCAACC-TTCCTCTCCATCCAGTCTACCCACACACCAAGTTT-CATGGCAATAT---CTCAC-----TCCT------------------------AACAAAAGT---TATCAGT--CCGAAACCA------T-TTTT------CT-A-TTTTTAGCAACGG------T------GACCTTGACC------CCA-------GTGGCCCCA-TATACAA-TC-CNAAC-CTTC--CTCTCCATCCAGTCT-AC--CCACACACCAAGTTTCATGGCAATATCTCATTCCTAAC-AAAA-GTTATCAGTTGAAA-ACAACGGAATGAGATGCGATTCCCACAAAGTTTGTACAGAGCCCCAACCATGCCTGCCCCCACCCTGCAAACCTCTTGTTTTGCTGGGTTTTGAAAATAATTA
Reference ( family-1096 ) : NAACACAACTAGACCTATCACTGAAAGTGATTGATACC-CCA-CCAAACAGC------T-------A-TC-GA------GTCCATTGTCACGATAGG-------GG---TGA---------TTTATCAACGGGTTTTGTGTTACTAAAACAATAGCA-ATAGGGACAC-------ACA---A--C-TAGGCC-TAG-------G-T-GC-----TTAG----GTACATTATT-TTAATATA---------------AT--TCAGGGAAGATGATTT--AAGCTTGTTA-TATTTA------T-----T--A-TC-----CT----AACAAAAGTTAT---CAGTC-GGAAACCGTTTTT--TCTATT-TTTAGCAACG---GTGACC-------TTGACCCCAGTGACCC---A-T-ATACAATCCCAACC-TTCCTCTCCATCCAGTCTACCCACACACCAAGTTT-CATGGCAATAT---CTCAC-----TCCT------------------------AACAAAAGT---TATCAGT--CCGAAACCA------T-TTTT------CT-A-TTTTTAGCAACGG------T------GACCTTGACC------CCA-------GTGGCCCCA-TATACAA-TC-CNAAC-CTTC--CTCTCCATCCAGTCT-AC--CCACACACCAAGTTTCATGGCAATATCTCATTCCTAAC-AAAA-GTTATCAGTTGAAA-ACAACGGAATGAGATGCGATTCCCACAAAGTTTGTACAGAGCCCCAACCATGCCTGCCCCCACCCTGCAAACCTCTTGTTTTGCTGGGTTTTGAAAATAATTA
gi|1 : AATACAACTAGATCTATCACTGAAAGTCATTCATACC-CCA-CCAAACAGC------T-------A-TC-GG------GTCCATTGTCAAAATAGG-------GG---TGA---------TTTTTCAATGGGTTTTGTGTTACTAAAACAATGGCA-ATAGGGACAT-------ACA---A--C-TAGATC-TAG-------G-TTGC-----TTAG----GTACATTATT-TTAATATA---------------AT--TCAGGGAAGATGATTT--CAGC----TA-CATGTAG-----T-----T--A-TC-----CT----AACAAAAGTTAC---CAATC-AGAAACAATTTTT--TCTATT-ATTATTAATGAAAGTGACC-------TTGACCCCAGTGACTC---A-T-ATACAATCCCAACC-TTCCTTTCTATCCAGTCTACCCTCACACCAAGTTT-CATGGCAATAA---CTCAT-----TCAT------------------------GACCAAAGT---TGTCAGT--CTG--ATTA------T-CCCC------CC-ACTTTTTTGCAACAG------A------GACCTTGACT------CCA-------GTGACCCAA-TATTCAA-AC-TAAAC-TTTC--CTCTCCTTCCAGTCT-AC--CCACACATCCTGTTTCATGGCAATATCTTATTCATAAC-AAAA-GTTATCAGTTGAAC-ACAACAGAATGAGCTGCGATT--CACAAAGTTTGTATAAAGCCCCAACCATGCCTGCCCCCACCCTGCAAACCTCTTGTTTTGTTGGGT-------ATAATTA
gi|10 : gA-CCAAATGGC------TGGATGCCA-TC-GG------GCCCATTGTCATGGTAGA-------GG---TAA---------TTCATCAACCGGTTAAGTATAAGTGAAACCACAGCA-t
gi|10 : AAGT---TATCAAT--CTGAAACCA------T-TTTT------CT-A-TTTT----AACA------------------------------CCA-------GTAGCCCCA-TAAACAA-CT-CCAAC-CTCC--CTCTATATCCAGTAT-AC--tgttattttgtagaatctaagatacatacacccaccatgtcttgtagtaagttatcaatctgaaaccatttttctattttaacaccagtagccccataaacaactccaacctccctctatatccagtatac
gi|11 : accaaatggctggatgccatcgggcccattgtcatggtagaggtaattcatcaaccggttaagtataagtgaaaccacagcatgttattttgtagaatctaagatacatacacccaccatgtcttgtagt-A-TTTTT--CAATGG------T------GACCTTGACC------ACATATATACATGTCGCCA-TATAGAA-TG-CCAGC-CTGC--CTC--AATGAAGCCT-AT--CCATGAACCAAGTGCCATGACAGTATTTCATTCCTAAC-AAAATGTTATCA-TTAGAA-ACAATGCAATGAGA
gi|12 : ttacaataggaaaacAA----GTATATTATT-T-AATATA---------------GT--TCAGGGAATATGATTTTCATGCTTGTTA-TATTTATATCTCT-----C--ACTC-----CC----AACAAAGGTCATCTGCAGTC-AGAAACAGTTTTT--------------------------CC-------TTGACCCCAGTGACCCA--A-T-ATACAATCCTAACC-TTCCTCTCCATTCAGTcagaaaaggatg
gi|13 : AACACA--TAGACAAATCATTGTATGTGATTGATATC-CCAACCAAACAGCCGGTTGT-------AGTC-TA------GTCCATTGTCATGATAGC-------GG-------------------TCAAAGGGTACTGTGTTATTAAAATAATAGa
gi|14 : TTTATGTTACTATAACAAT------TAAG-AGAA-------ACA---A--C-TTGGCC-TAGTTGGCTAA-T-GCAAACTTTAGCCATATACATTACT-TCAATACA---------------AT--TCAGGGAAGATGATTT--AAGaa
gi|15 : TT--TCTATT-ATTAGTAACA---ATGTCCATGACATTTTACCCCAGTGATCCT--A-T-ATACATTACCAACC-TTTATCTCTATCTAGTCTATCAGCAAAC
gi|16 : gtg-------A-TT-GA------GTCAATTGTCATGATAGG-------AG---AGA---------TTTATCAACAGGTTTTGTGTAAGTATTACAGTAga
gi|17 : aaatggctggttgtcAAACCAGATCACT-TTTT------CT-T-TTAATAGCAACAG------T------GACCTTGACC------catta
gi|18 : accattagaagtttaagcttatAG----GTACATTATC-TTAATATA---------------AT--TCAGGGAAGATGAttaa
gi|2 : ACCTATCCCTAACAGTGAGTGACACCTCCA-CCAAACAGC------T-------G-TTTGACATTATGCCCACTCTCATGATGTG-------GA---TGA---------TTTATCAATCAGCTTCGTGTCAC-AAAACGAT------TGGGGACAG-------ACACTTA--C-TATGCT-TAA-------A---GC-----TT
gi|2 : aaaaaca-------G-T-AT-----TCAG----GAACATTATT-TTAATATATATATACATGTAATAAT--TCAGGGAAGATGACTT--AAGCTTGTTA-TTTTTA------T--------A-TC-----T------------GTCAC---TGATC-T--AACC--TTTT--CCTTTT-TTTAACAATG---GTGTCT-------TTGCCCTCTGTGACCTTATA-TTATGCAATCCCAACC-GTCATCTCCATTAAGTCTACCCACATACCAAATAT-CGTGGCAATgccaaattttgtattcatgcgctatttagccaaattttgtattcaggaacattattttaatatatatatacatgtaataattcagggaagatgacttaagcttgttatttttatatctgtcactgatctaaccttttcctttttttaacaatggtgtctttgccctctgtgaccttatattatgcaatcccaaccgtcatctccattaagtctacccacataccaaatatcgtggcaat
gi|3 : aaaaacaacctatccctaacagtgagtgacacctccaccaaacagctgtttgacattatgcccactctcatgatgtggatgatttatcaatcagcttcgtgtcacaaaacgattggggacagacacttactatgcttaaagcttgccaaattttgtattcatgcgctatttagccaaatttt-GA------GTCCATTGTCATGATAAG-------GG---TGA---------GTTATCAACCAAATGTTTGCTCCGAAAACAACA-TA-AAAGAGAAAC-------ACA---A--C-TAGGCT-TAG-------GAT-GC-----
gi|3 : tGTCTGAAAAATATTTTT--TCTATT-TATAGCAACA---GTGACC-------TTGAC-------------------------------C-TTC-TCCCCATCCAGTCTAAACACACATCAAGTTTTCA-GGCAATAT---CTTAC-----TCCTGACATAAGTTATCAGTCTGAAACCAACAAAAGT---TCTCAAA--CCGAAACCA------T-TTTTTTTCTTCT-A-ATTTTAGCAACAG------T------GACCTTGACCTTAATTCCA-------GTAGCCCAA--ATAT---TC-CCAAC-CTTC--ATC-CCATCCAGTCTAACAACCACACACCAAA-TTCATGGCAAaaaataagtgacaatgtctgaaaaatattttttctatttatagcaacagtgaccttgaccttctccccatccagtctaaacacacatcaagttttcaggcaatatcttactcctgacataagttatcagtctgaaaccaacaaaagttctcaaaccgaaaccattttttttcttctaattttagcaacagtgaccttgaccttaattccagtagcccaaatattcccaaccttcatcccatccagtctaacaaccacacaccaaattcatggcaaattca
gi|4 : tgagtccattgtcatgataagggtgagttatcaaccaaatgtttgctccgaaaacaacataaaagagaaacacaactaggcttaggatgcaaaataagtgacaatC-CTA-TCAAACAGC------T-------G-TTTGA------GGTCATT--CACAATAGGAAGGAGGGG---TGGGGGGGGAGCTTTATTAACAGGTTTTGTATAACTAAAGTAATAGCAGATAAG-ACGCCGTGGTTGCA---ATGC-TAATTCATAC-------T-T--------TTCG----CCAGATTCTT-TAAATATA---------------ATATTTTGGGAGGAGGACGT--AAGCTTGTTACTATTTA------TATCTCTCAA-TC-----TT----GATAGAAGTTAT---CAGTC-AAAAACCATTTTT--CCT-CT-TTTAGCAATG---GTGACC-------TTGACCCCG----------A-T-ATACAATCCCAAGTATTCCTCTCCATCCAGTCTACC--------AGGTTT-CATGACAATAT---TTGAT-----TCTA------------------------AACAAAAGT---TATattca
gi|5 : ctTATTGTTAATATA---------------AT--TCAAGGCATATGATTC--AAGTTTGTTA-TGTTTA------T--------A-TCTCTCGCTCGTAGACAAG-GTTAC---CAGTG-GGAAACCGTT--------ATTGTTTAGCAACG---ATGACC-------TT-ATTTTTGT--------A-T-ATACATTATGAAGC-TTTCTTCCTGTTCTTTCT---CAGAAAACA------CATAGCAGTAT---TTCAC-----TCTT------------------------AACAAAAGT---TTTCCGTGTTTGAAACCT------TATTTT------CC-A-GTTCTAATAACTG------TAATATTGACCTTGATC------CCA-------GTGGCCCTA-CATGTAA-TCACAAACTCTTCAATTTT---TTTAGTCT-AC--CCATACACCAAGATTAATGGCAATATCTC-CTCCAAATAAAAA-GTTATCAataatagttgaaacacaaagggatggg
gi|6 : tatattaaccaC-CCA-TCAAACAGC------TGGTTGCCA-TT-GA------GTCCAATGCCAAGATAGG-------GA---TGA---------TTAATCAATGGGTTTTGTGTTACT-AAACAATAGa
gi|6 : AACC-CTCCTCTTGATTCATTCTACTTACACACCA-GTTA-CATGGAGACATTGCCTTACAATACTCCT------------------------TACAAAAGTAATTATCAAT--GGGAAGCCA------T-TTTT------CT-A-TTTTAAGCAATGG------T------GACCTTGACC------CCA-------GAAGCCCCA-TATGAAA-T----A-------------CCATCCAGTCT-AC--CTA-----CAAGTTTCATGACaagaaccctcctcttgattcattctacttacacaccagttacatggagacattgccttacaatactccttacaaaagtaattatcaatgggaagccatttttctattttaagcaatggtgaccttgaccccagaagccccatatgaaataccatccagtctacctacaagtttcatgac
gi|7 : cccatcaaacagctggttgccattgagtccaatgccaagatagggatgattaatcaatgggttttgtgttactaaacaatagaagCAATAT---CTCAC-----TCAT------------------------AATAAAAGT---TATCAGT--CCAAAACAA------T-TTTT------CT-A-TTTTTAGCAATGG------T------GACCTTGA-C------CAA-------GTGACAGTATTATACAT-TA-CTGAC-CTTC--CTCTCCAT---------C--CTACATACCATGTTTCATGGAAATATCTCATTCCCAAC-AAAA-GTTACCAGTTGAAATACAAAAGGATGGGATGTGATTCCCACAA----TGT-CAGAGCCC---CCAT--CTG-----ACCC--CAAAC--CTTGTTTT-CTGGGTTTTGAAAATAATTA
gi|8 : TTTA--TATATA-TTTAGCTACA---ATGACC-------ATTACCCCAGTAGCCC---AAT-GTACAATCCCAACC-TTTCTCTGCATCAAGTCTACTCACACACCAAGTTT-TATGGGAATTT---CTCAC-----TCCT------------------------AATGAAATT---TATCAGA--CGAAAACTGT-----T-TTTT------CTAA-TTTTTAGCAATGGTGAGCTT------GACTTTGACT------CAA-------GTGACACTA-TATACAATTC-CAAAA-CTTC--CTCTCCATCTAGTCT-AC--CCACAGA-TAAGTT
gi|9 : -------A-TC-AA------GTCCATCATCACAAAAGG-------GAGTATGA---------TATATTACTGGGTTTTGTGTTACCAAAACAGTAGAA-GAAGAAACAC-------ACA---A--CTTAGG-C-TAG-------C-T-GC-----TAA------TAT-TTATT-------------------------T--TCAGCCA----GATT----ACCTCACT----TTTA-------------------------------ACAAAAATTAT---CAGTT-GGAAACCTTTTTTTATTTATA-TTAAGTAATG---AT-CCC-------TTGATCCCAGT----------T-A---------AACT-TTTCTCTCCATCCAGTgtat
Alignments
lowQualScore : 11 44444444444444 111111 1111111 111111111 111111 22222222 111111 333333333333333333 1111 333333333333333 9999999999999999999999999999999 111 1111111 3333333333 111 11111 555555555555555555555555 111111 2222222222222 111111 1111111 1111 1 1 1 11 2222 1 222 11 22222 11 11 1 3333333
lowQualScore : 88 8 6 22222222222222 5 8 222222 0 4 4444444 777 777777777 1 0 111111 9 22222222 111111 6 3 6 999999999999999999 2222 777 111111111111111 66 888 6 1 5555555555555555555555555555555 3 000 5 777 7 666 3 55 777 1 3333333 1 7777777777 4 2 1 0 4 11 1 7 5 000 44444 1 555555555555555555555555 888 77 4 5 5 666666 5 5 33 6666666666666 1 444444 6666666 2 5 0 0000 2 5 66 88 11 5 66 1 3 3 1 3 1 0 0 6 3 44 77 4444 5 111 77 55555 88 88 5 3333333
lowQualScore : .. . . .............. . . ...... . . ....... ... ......... . . ...... . ........ ...... . . . .................. .... ... ............... .. ... . . ............................... . ... . ... . ... . .. ... . ....... . .......... . . . . . .. . . . ... ..... . ........................ ... .. . . . ...... . . .. ............. . ...... ....... . . . .... . . .. .. .. . .. . . . . . . . . . . .. .. .... . ... .. ..... .. .. . .......
lowQualScore : 00 0 7 77777777777777 0 9 888888 1 4 4444444 888 888888888 9 3 555555 3 77777777 888888 7 7 7 333333333333333333 1111 444 222222222222222 99 000 7 8 2222222222222222222222222222222 6 000 7 999 4 888 5 22 000 0 0000000 1 9999999999 4 1 1 1 0 66 4 1 7 000 33333 7 000000000000000000000000 888 99 0 7 7 444444 0 0 88 0000000000000 4 444444 2222222 2 0 2 6666 8 0 99 88 66 0 99 7 0 0 7 2 2 0 0 7 3 33 55 0000 5 000 55 00000 00 00 0 0000000
consensus : NAACACAACTAGACCTATCACTGAAAGTGATTGATACC-CCA-CCAAACAGC------T-------A-TC-GA------GTCCATTGTCACGATAGG-------GG---TGA---------TTTATCAACGGGTTTTGTGTTACTAAAACAATAGCA-ATAGGGACAC-------ACA---A--C-TAGGCC-TAG-------G-T-GC-----TTAG----GTACATTATT-TTAATATA---------------AT--TCAGGGAAGATGATTT--AAGCTTGTTA-TATTTA------T-----T--A-TC-----CT----GACAAAAGTTAC---CA-GTC-GGAAACCGTTTTT--TCTATT-TTTAGCAACG---GTGACC-------TTGACCCCAGTGACCC---A-T-ATACAATCCCAACC-TTCCTCTCCATCCAGTCTACCCACACACCAAGTTT-CATGGCAATAT---CTCAC-----TCCT------------------------AACAAAAGT---TATCAGT--CCGAAACCA-T-TTTT------CT-A-TTTTTAGCAACGG------T------GACCTTGACC------CCA-------GTGGCCCCA-TATACAA-TC-CNAAC-CTTC--CTCTCCATCCAGTCT-AC--CCACACACCAAGTTTCATGGCAATATCTCATTCCTAAC-AAAA-GTTATCAGTTGAAA-ACAACGGAATGAGATGCGATTCCCACAAAGTTTGTACAGAGCCCCAACCATGCCTGCCCCCACCCTGCAAACCTCTTGTTTTGCTGGGTTTTGAAAATAATTA
Reference ( family-1096 ) : NAACACAACTAGACCTATCACTGAAAGTGATTGATACC-CCA-CCAAACAGC------T-------A-TC-GA------GTCCATTGTCACGATAGG-------GG---TGA---------TTTATCAACGGGTTTTGTGTTACTAAAACAATAGCA-ATAGGGACAC-------ACA---A--C-TAGGCC-TAG-------G-T-GC-----TTAG----GTACATTATT-TTAATATA---------------AT--TCAGGGAAGATGATTT--AAGCTTGTTA-TATTTA------T-----T--A-TC-----CT----GACAAAAGTTAC---CA-GTC-GGAAACCGTTTTT--TCTATT-TTTAGCAACG---GTGACC-------TTGACCCCAGTGACCC---A-T-ATACAATCCCAACC-TTCCTCTCCATCCAGTCTACCCACACACCAAGTTT-CATGGCAATAT---CTCAC-----TCCT------------------------AACAAAAGT---TATCAGT--CCGAAACCA-T-TTTT------CT-A-TTTTTAGCAACGG------T------GACCTTGACC------CCA-------GTGGCCCCA-TATACAA-TC-CNAAC-CTTC--CTCTCCATCCAGTCT-AC--CCACACACCAAGTTTCATGGCAATATCTCATTCCTAAC-AAAA-GTTATCAGTTGAAA-ACAACGGAATGAGATGCGATTCCCACAAAGTTTGTACAGAGCCCCAACCATGCCTGCCCCCACCCTGCAAACCTCTTGTTTTGCTGGGTTTTGAAAATAATTA
gi|1 : AATACAACTAGATCTATCACTGAAAGTCATTCATACC-CCA-CCAAACAGC------T-------A-TC-GG------GTCCATTGTCAAAATAGG-------GG---TGA---------TTTTTCAATGGGTTTTGTGTTACTAAAACAATGGCA-ATAGGGACAT-------ACA---A--C-TAGATC-TAG-------G-TTGC-----TTAG----GTACATTATT-TTAATATA---------------AT--TCAGGGAAGATGATTT--CAGC----TA-CATGTAG-----T-----T--A-TC-----CT----AACAAAAGTTAC---CA-ATC-AGAAACAATTTTT--TCTATT-ATTATTAATGAAAGTGACC-------TTGACCCCAGTGACTC---A-T-ATACAATCCCAACC-TTCCTTTCTATCCAGTCTACCCTCACACCAAGTTT-CATGGCAATAA---CTCAT-----TCAT------------------------GACCAAAGT---TGTCAGT--CTG--ATTA-T-CCCC------CC-ACTTTTTTGCAACAG------A------GACCTTGACT------CCA-------GTGACCCAA-TATTCAA-AC-TAAAC-TTTC--CTCTCCTTCCAGTCT-AC--CCACACATCCTGTTTCATGGCAATATCTTATTCATAAC-AAAA-GTTATCAGTTGAAC-ACAACAGAATGAGCTGCGATT--CACAAAGTTTGTATAAAGCCCCAACCATGCCTGCCCCCACCCTGCAAACCTCTTGTTTTGTTGGGT-------ATAATTA
gi|10 : gA-CCAAATGGC------TGGATGCCA-TC-GG------GCCCATTGTCATGGTAGA-------GG---TAA---------TTCATCAACCGGTTAAGTATAAGTGAAACCACAGCA-t
gi|10 : AAGT---TATCAAT--CTGAAACCA-T-TTTT------CT-A-TTTT----AACA------------------------------CCA-------GTAGCCCCA-TAAACAA-CT-CCAAC-CTCC--CTCTATATCCAGTAT-AC--tgttattttgtagaatctaagatacatacacccaccatgtcttgtagtaagttatcaatctgaaaccatttttctattttaacaccagtagccccataaacaactccaacctccctctatatccagtatac
gi|11 : accaaatggctggatgccatcgggcccattgtcatggtagaggtaattcatcaaccggttaagtataagtgaaaccacagcatgttattttgtagaatctaagatacatacacccaccatgtcttgtagt-A-TTTTT--CAATGG------T------GACCTTGACC------ACATATATACATGTCGCCA-TATAGAA-TG-CCAGC-CTGC--CTC--AATGAAGCCT-AT--CCATGAACCAAGTGCCATGACAGTATTTCATTCCTAAC-AAAATGTTATCA-TTAGAA-ACAATGCAATGAGA
gi|12 : ttacaataggaaaacAA----GTATATTATT-T-AATATA---------------GT--TCAGGGAATATGATTTTCATGCTTGTTA-TATTTATATCTCT-----C--ACTC-----CC----AACAAAGGTCATCTGCA-GTC-AGAAACAGTTTTT--------------------------CC-------TTGACCCCAGTGACCCA--A-T-ATACAATCCTAACC-TTCCTCTCCATTCAGTcagaaaaggatg
gi|13 : AACACA--TAGACAAATCATTGTATGTGATTGATATC-CCAACCAAACAGCCGGTTGT-------AGTC-TA------GTCCATTGTCATGATAGC-------GG-------------------TCAAAGGGTACTGTGTTATTAAAATAATAGa
gi|14 : TTTATGTTACTATAACAAT------TAAG-AGAA-------ACA---A--C-TTGGCC-TAGTTGGCTAA-T-GCAAACTTTAGCCATATACATTACT-TCAATACA---------------AT--TCAGGGAAGATGATTT--AAGaa
gi|15 : TT--TCTATT-ATTAGTAACA---ATGTCCATGACATTTTACCCCAGTGATCCT--A-T-ATACATTACCAACC-TTTATCTCTATCTAGTCTATCAGCAAAC
gi|16 : gtg-------A-TT-GA------GTCAATTGTCATGATAGG-------AG---AGA---------TTTATCAACAGGTTTTGTGTAAGTATTACAGTAga
gi|17 : aaatggctggttgtcAGATCACTTTT--TCTTTT-AATAGCAACA---GTGACC-------TTGACCcatta
gi|18 : accattagaagtttaagcttataaaccAG----GTACATTATC-TTAATATA---------------AT--TCAGGGAAGATGAttaa
gi|2 : ACCTATCCCTAACAGTGAGTGACACCTCCA-CCAAACAGC------T-------G-TTTGACATTATGCCCACTCTCATGATGTG-------GA---TGA---------TTTATCAATCAGCTTCGTGTCAC-AAAACGAT------TGGGGACAG-------ACACTTA--C-TATGCT-TAA-------A---GC-----TT
gi|2 : aaaaaca-------G-T-AT-----TCAG----GAACATTATT-TTAATATATATATACATGTAATAAT--TCAGGGAAGATGACTT--AAGCTTGTTA-TTTTTA------T--------A-TC-----T------------GTCAC---TG-ATC-T--AACC--TTTT--CCTTTT-TTTAACAATG---GTGTCT-------TTGCCCTCTGTGACCTTATA-TTATGCAATCCCAACC-GTCATCTCCATTAAGTCTACCCACATACCAAATAT-CGTGGCAATgccaaattttgtattcatgcgctatttagccaaattttgtattcaggaacattattttaatatatatatacatgtaataattcagggaagatgacttaagcttgttatttttatatctgtcactgatctaaccttttcctttttttaacaatggtgtctttgccctctgtgaccttatattatgcaatcccaaccgtcatctccattaagtctacccacataccaaatatcgtggcaat
gi|3 : aaaaacaacctatccctaacagtgagtgacacctccaccaaacagctgtttgacattatgcccactctcatgatgtggatgatttatcaatcagcttcgtgtcacaaaacgattggggacagacacttactatgcttaaagcttgccaaattttgtattcatgcgctatttagccaaatttt-GA------GTCCATTGTCATGATAAG-------GG---TGA---------GTTATCAACCAAATGTTTGCTCCGAAAACAACA-TA-AAAGAGAAAC-------ACA---A--C-TAGGCT-TAG-------GAT-GC-----
gi|3 : tAAGTGAC---AATGTCTGAAAAATATTTTT--TCTATT-TATAGCAACA---GTGACC-------TTGAC-------------------------------C-TTC-TCCCCATCCAGTCTAAACACACATCAAGTTTTCA-GGCAATAT---CTTAC-----TCCTGACATAAGTTATCAGTCTGAAACCAACAAAAGT---TCTCAAA--CCGAAACCA-T-TTTTTTTCTTCT-A-ATTTTAGCAACAG------T------GACCTTGACCTTAATTCCA-------GTAGCCCAA--ATAT---TC-CCAAC-CTTC--ATC-CCATCCAGTCTAACAACCACACACCAAA-TTCATGGCAAaaaataagtgacaatgtctgaaaaatattttttctatttatagcaacagtgaccttgaccttctccccatccagtctaaacacacatcaagttttcaggcaatatcttactcctgacataagttatcagtctgaaaccaacaaaagttctcaaaccgaaaccattttttttcttctaattttagcaacagtgaccttgaccttaattccagtagcccaaatattcccaaccttcatcccatccagtctaacaaccacacaccaaattcatggcaaattca
gi|4 : tgagtccattgtcatgataagggtgagttatcaaccaaatgtttgctccgaaaacaacataaaagagaaacacaactaggcttaggatgcaaaatC-CTA-TCAAACAGC------T-------G-TTTGA------GGTCATT--CACAATAGGAAGGAGGGG---TGGGGGGGGAGCTTTATTAACAGGTTTTGTATAACTAAAGTAATAGCAGATAAG-ACGCCGTGGTTGCA---ATGC-TAATTCATAC-------T-T--------TTCG----CCAGATTCTT-TAAATATA---------------ATATTTTGGGAGGAGGACGT--AAGCTTGTTACTATTTA------TATCTCTCAA-TC-----TT----GATAGAAGTTAT---CA-GTC-AAAAACCATTTTT--CCT-CT-TTTAGCAATG---GTGACC-------TTGACCCCG----------A-T-ATACAATCCCAAGTATTCCTCTCCATCCAGTCTACC--------AGGTTT-CATGACAATAT---TTGAT-----TCTA------------------------AACAAAAGT---TATattca
gi|5 : ctTATTGTTAATATA---------------AT--TCAAGGCATATGATTC--AAGTTTGTTA-TGTTTA------T--------A-TCTCTCGCTCGTAGACAAG-GTTAC---CA-GTG-GGAAACCGTT--------ATTGTTTAGCAACG---ATGACC-------TT-ATTTTTGT--------A-T-ATACATTATGAAGC-TTTCTTCCTGTTCTTTCT---CAGAAAACA------CATAGCAGTAT---TTCAC-----TCTT------------------------AACAAAAGT---TTTCCGTGTTTGAAACCT-TATTTT------CC-A-GTTCTAATAACTG------TAATATTGACCTTGATC------CCA-------GTGGCCCTA-CATGTAA-TCACAAACTCTTCAATTTT---TTTAGTCT-AC--CCATACACCAAGATTAATGGCAATATCTC-CTCCAAATAAAAA-GTTATCAataatagttgaaacacaaagggatggg
gi|6 : tatattaaccaC-CCA-TCAAACAGC------TGGTTGCCA-TT-GA------GTCCAATGCCAAGATAGG-------GA---TGA---------TTAATCAATGGGTTTTGTGTTACT-AAACAATAGa
gi|6 : AACC-CTCCTCTTGATTCATTCTACTTACACACCA-GTTA-CATGGAGACATTGCCTTACAATACTCCT------------------------TACAAAAGTAATTATCAAT--GGGAAGCCA-T-TTTT------CT-A-TTTTAAGCAATGG------T------GACCTTGACC------CCA-------GAAGCCCCA-TATGAAA-T----A-------------CCATCCAGTCT-AC--CTA-----CAAGTTTCATGACaagaaccctcctcttgattcattctacttacacaccagttacatggagacattgccttacaatactccttacaaaagtaattatcaatgggaagccatttttctattttaagcaatggtgaccttgaccccagaagccccatatgaaataccatccagtctacctacaagtttcatgac
gi|7 : cccatcaaacagctggttgccattgagtccaatgccaagatagggatgattaatcaatgggttttgtgttactaaacaatagaagCAATAT---CTCAC-----TCAT------------------------AATAAAAGT---TATCAGT--CCAAAACAA-T-TTTT------CT-A-TTTTTAGCAATGG------T------GACCTTGA-C------CAA-------GTGACAGTATTATACAT-TA-CTGAC-CTTC--CTCTCCAT---------C--CTACATACCATGTTTCATGGAAATATCTCATTCCCAAC-AAAA-GTTACCAGTTGAAATACAAAAGGATGGGATGTGATTCCCACAA----TGT-CAGAGCCC---CCAT--CTG-----ACCC--CAAAC--CTTGTTTT-CTGGGTTTTGAAAATAATTA
gi|8 : TTTA--TATATA-TTTAGCTACA---ATGACC-------ATTACCCCAGTAGCCC---AAT-GTACAATCCCAACC-TTTCTCTGCATCAAGTCTACTCACACACCAAGTTT-TATGGGAATTT---CTCAC-----TCCT------------------------AATGAAATT---TATCAGA--CGAAAACTGTT-TTTT------CTAA-TTTTTAGCAATGGTGAGCTT------GACTTTGACT------CAA-------GTGACACTA-TATACAATTC-CAAAA-CTTC--CTCTCCATCTAGTCT-AC--CCACAGA-TAAGTT
gi|9 : -------A-TC-AA------GTCCATCATCACAAAAGG-------GAGTATGA---------TATATTACTGGGTTTTGTGTTACCAAAACAGTAGAA-GAAGAAACAC-------ACA---A--CTTAGG-C-TAG-------C-T-GC-----TAA------TAT-TTATT-------------------------T--TCAGCCA----GATT----ACCTCACT----TTTA-------------------------------ACAAAAATTAT---CA-GTT-GGAAACCTTTTTTTATTTATA-TTAAGTAATG---AT-CCC-------TTGATCCCAGT----------T-A---------AACT-TTTCTCTCCATCCAGTgtat
Alignments
lowQualScore : 11 44444444444444 111111 1111111 111111111 111111 22222222 111111 333333333333333333 1111 333333333333333 9999999999999999999999999999999 111 1111111 3333333333 111 11111 555555555555555555555555 111111 2222222222222 111111 1111111 1111 1 1 1 11 2222 1 222 11 22222 11 11 1 3333333
lowQualScore : 88 8 6 22222222222222 5 8 222222 0 4 4444444 777 777777777 1 0 111111 9 22222222 111111 6 3 6 999999999999999999 2222 777 111111111111111 66 888 6 1 5555555555555555555555555555555 3 000 5 777 7 666 3 55 777 1 3333333 1 7777777777 4 2 1 0 4 11 1 7 5 000 44444 1 555555555555555555555555 888 77 4 5 5 666666 5 5 33 6666666666666 1 444444 6666666 2 5 0 0000 2 5 66 88 11 5 66 1 3 3 1 3 1 0 0 6 3 44 77 4444 5 111 77 55555 88 88 5 3333333
lowQualScore : .. . . .............. . . ...... . . ....... ... ......... . . ...... . ........ ...... . . . .................. .... ... ............... .. ... . . ............................... . ... . ... . ... . .. ... . ....... . .......... . . . . . .. . . . ... ..... . ........................ ... .. . . . ...... . . .. ............. . ...... ....... . . . .... . . .. .. .. . .. . . . . . . . . . . .. .. .... . ... .. ..... .. .. . .......
lowQualScore : 00 0 7 77777777777777 0 9 888888 1 4 4444444 888 888888888 9 3 555555 3 77777777 888888 7 7 7 333333333333333333 1111 444 222222222222222 99 000 7 8 2222222222222222222222222222222 6 000 7 999 4 888 5 22 000 0 0000000 1 9999999999 4 1 1 1 0 66 4 1 7 000 33333 7 000000000000000000000000 888 99 0 7 7 444444 0 0 88 0000000000000 4 444444 2222222 2 0 2 6666 8 0 99 88 66 0 99 7 0 0 7 2 2 0 0 7 3 33 55 0000 5 000 55 00000 00 00 0 0000000
consensus : NAACACAACTAGACCTATCACTGAAAGTGATTGATACC-CCA-CCAAACAGC------T-------A-TC-GA------GTCCATTGTCACGATAGG-------GG---TGA---------TTTATCAACGGGTTTTGTGTTACTAAAACAATAGCA-ATAGGGACAC-------ACA---A--C-TAGGCC-TAG-------G-T-GC-----TTAG----GTACATTATT-TTAATATA---------------AT--TCAGGGAAGATGATTT--AAGCTTGTTA-TATTTA------T-----T--A-TC-----CT----GACAAAAGTTAC---CA-GTC-GGAAACCGTTTTT--TCTATT-TTTAGCAACG---GTGACC-------TTGACCCCAGTGACCC---A-T-ATACAATCCCAACC-TTCCTCTCCATCCAGTCTACCCACACACCAAGTTT-CATGGCAATAT---CTCAC-----TCCT------------------------AACAAAAGT---TATCAGT--CCGAAACCA-T-TTTT------CT-A-TTTTTAGCAACGG------T------GACCTTGACC------CCA-------GTGGCCCCA-TATACAA-TC-CNAAC-CTTC--CTCTCCATCCAGTCT-AC--CCACACACCAAGTTTCATGGCAATATCTCATTCCTAAC-AAAA-GTTATCAGTTGAAA-ACAACGGAATGAGATGCGATTCCCACAAAGTTTGTACAGAGCCCCAACCATGCCTGCCCCCACCCTGCAAACCTCTTGTTTTGCTGGGTTTTGAAAATAATTA
Reference ( family-1096 ) : NAACACAACTAGACCTATCACTGAAAGTGATTGATACC-CCA-CCAAACAGC------T-------A-TC-GA------GTCCATTGTCACGATAGG-------GG---TGA---------TTTATCAACGGGTTTTGTGTTACTAAAACAATAGCA-ATAGGGACAC-------ACA---A--C-TAGGCC-TAG-------G-T-GC-----TTAG----GTACATTATT-TTAATATA---------------AT--TCAGGGAAGATGATTT--AAGCTTGTTA-TATTTA------T-----T--A-TC-----CT----GACAAAAGTTAC---CA-GTC-GGAAACCGTTTTT--TCTATT-TTTAGCAACG---GTGACC-------TTGACCCCAGTGACCC---A-T-ATACAATCCCAACC-TTCCTCTCCATCCAGTCTACCCACACACCAAGTTT-CATGGCAATAT---CTCAC-----TCCT------------------------AACAAAAGT---TATCAGT--CCGAAACCA-T-TTTT------CT-A-TTTTTAGCAACGG------T------GACCTTGACC------CCA-------GTGGCCCCA-TATACAA-TC-CNAAC-CTTC--CTCTCCATCCAGTCT-AC--CCACACACCAAGTTTCATGGCAATATCTCATTCCTAAC-AAAA-GTTATCAGTTGAAA-ACAACGGAATGAGATGCGATTCCCACAAAGTTTGTACAGAGCCCCAACCATGCCTGCCCCCACCCTGCAAACCTCTTGTTTTGCTGGGTTTTGAAAATAATTA
gi|1 : AATACAACTAGATCTATCACTGAAAGTCATTCATACC-CCA-CCAAACAGC------T-------A-TC-GG------GTCCATTGTCAAAATAGG-------GG---TGA---------TTTTTCAATGGGTTTTGTGTTACTAAAACAATGGCA-ATAGGGACAT-------ACA---A--C-TAGATC-TAG-------G-TTGC-----TTAG----GTACATTATT-TTAATATA---------------AT--TCAGGGAAGATGATTT--CAGC----TA-CATGTAG-----T-----T--A-TC-----CT----AACAAAAGTTAC---CA-ATC-AGAAACAATTTTT--TCTATT-ATTATTAATGAAAGTGACC-------TTGACCCCAGTGACTC---A-T-ATACAATCCCAACC-TTCCTTTCTATCCAGTCTACCCTCACACCAAGTTT-CATGGCAATAA---CTCAT-----TCAT------------------------GACCAAAGT---TGTCAGT--CTG--ATTA-T-CCCC------CC-ACTTTTTTGCAACAG------A------GACCTTGACT------CCA-------GTGACCCAA-TATTCAA-AC-TAAAC-TTTC--CTCTCCTTCCAGTCT-AC--CCACACATCCTGTTTCATGGCAATATCTTATTCATAAC-AAAA-GTTATCAGTTGAAC-ACAACAGAATGAGCTGCGATT--CACAAAGTTTGTATAAAGCCCCAACCATGCCTGCCCCCACCCTGCAAACCTCTTGTTTTGTTGGGT-------ATAATTA
gi|10 : gA-CCAAATGGC------TGGATGCCA-TC-GG------GCCCATTGTCATGGTAGA-------GG---TAA---------TTCATCAACCGGTTAAGTATAAGTGAAACCACAGCA-t
gi|10 : AAGT---TATCAAT--CTGAAACCA-T-TTTT------CT-A-TTTT----AACA------------------------------CCA-------GTAGCCCCA-TAAACAA-CT-CCAAC-CTCC--CTCTATATCCAGTAT-AC--tgttattttgtagaatctaagatacatacacccaccatgtcttgtagtaagttatcaatctgaaaccatttttctattttaacaccagtagccccataaacaactccaacctccctctatatccagtatac
gi|11 : accaaatggctggatgccatcgggcccattgtcatggtagaggtaattcatcaaccggttaagtataagtgaaaccacagcatgttattttgtagaatctaagatacatacacccaccatgtcttgtagt-A-TTTTT--CAATGG------T------GACCTTGACC------ACATATATACATGTCGCCA-TATAGAA-TG-CCAGC-CTGC--CTC--AATGAAGCCT-AT--CCATGAACCAAGTGCCATGACAGTATTTCATTCCTAAC-AAAATGTTATCA-TTAGAA-ACAATGCAATGAGA
gi|12 : ttacaataggaaaacAA----GTATATTATT-T-AATATA---------------GT--TCAGGGAATATGATTTTCATGCTTGTTA-TATTTATATCTCT-----C--ACTC-----CC----AACAAAGGTCATCTGCA-GTC-AGAAACAGTTTTT--------------------------CC-------TTGACCCCAGTGACCCA--A-T-ATACAATCCTAACC-TTCCTCTCCATTCAGTcagaaaaggatg
gi|13 : AACACA--TAGACAAATCATTGTATGTGATTGATATC-CCAACCAAACAGCCGGTTGT-------AGTC-TA------GTCCATTGTCATGATAGC-------GG-------------------TCAAAGGGTACTGTGTTATTAAAATAATAGa
gi|14 : TTTATGTTACTATAACAAT------TAAG-AGAA-------ACA---A--C-TTGGCC-TAGTTGGCTAA-T-GCAAACTTTAGCCATATACATTACT-TCAATACA---------------AT--TCAGGGAAGATGATTT--AAGaa
gi|15 : TT--TCTATT-ATTAGTAACA---ATGTCCATGACATTTTACCCCAGTGATCCT--A-T-ATACATTACCAACC-TTTATCTCTATCTAGTCTATCAGCAAAC
gi|16 : gtg-------A-TT-GA------GTCAATTGTCATGATAGG-------AG---AGA---------TTTATCAACAGGTTTTGTGTAAGTATTACAGTAga
gi|17 : aaatggctggttgtcAGATCACTTTT--TCTTTT-AATAGCAACA---GTGACC-------TTGACCcatta
gi|18 : accattagaagtttaagcttataaaccAG----GTACATTATC-TTAATATA---------------AT--TCAGGGAAGATGAttaa
gi|2 : ACCTATCCCTAACAGTGAGTGACACCTCCA-CCAAACAGC------T-------G-TTTGACATTATGCCCACTCTCATGATGTG-------GA---TGA---------TTTATCAATCAGCTTCGTGTCAC-AAAACGAT------TGGGGACAG-------ACACTTA--C-TATGCT-TAA-------A---GC-----TT
gi|2 : aaaaaca-------G-T-AT-----TCAG----GAACATTATT-TTAATATATATATACATGTAATAAT--TCAGGGAAGATGACTT--AAGCTTGTTA-TTTTTA------T--------A-TC-----T------------GTCAC---TG-ATC-T--AACC--TTTT--CCTTTT-TTTAACAATG---GTGTCT-------TTGCCCTCTGTGACCTTATA-TTATGCAATCCCAACC-GTCATCTCCATTAAGTCTACCCACATACCAAATAT-CGTGGCAATgccaaattttgtattcatgcgctatttagccaaattttgtattcaggaacattattttaatatatatatacatgtaataattcagggaagatgacttaagcttgttatttttatatctgtcactgatctaaccttttcctttttttaacaatggtgtctttgccctctgtgaccttatattatgcaatcccaaccgtcatctccattaagtctacccacataccaaatatcgtggcaat
gi|3 : aaaaacaacctatccctaacagtgagtgacacctccaccaaacagctgtttgacattatgcccactctcatgatgtggatgatttatcaatcagcttcgtgtcacaaaacgattggggacagacacttactatgcttaaagcttgccaaattttgtattcatgcgctatttagccaaatttt-GA------GTCCATTGTCATGATAAG-------GG---TGA---------GTTATCAACCAAATGTTTGCTCCGAAAACAACA-TA-AAAGAGAAAC-------ACA---A--C-TAGGCT-TAG-------GAT-GC-----
gi|3 : tAAGTGAC---AATGTCTGAAAAATATTTTT--TCTATT-TATAGCAACA---GTGACC-------TTGAC-------------------------------C-TTC-TCCCCATCCAGTCTAAACACACATCAAGTTTTCA-GGCAATAT---CTTAC-----TCCTGACATAAGTTATCAGTCTGAAACCAACAAAAGT---TCTCAAA--CCGAAACCA-T-TTTTTTTCTTCT-A-ATTTTAGCAACAG------T------GACCTTGACCTTAATTCCA-------GTAGCCCAA--ATAT---TC-CCAAC-CTTC--ATC-CCATCCAGTCTAACAACCACACACCAAA-TTCATGGCAAaaaataagtgacaatgtctgaaaaatattttttctatttatagcaacagtgaccttgaccttctccccatccagtctaaacacacatcaagttttcaggcaatatcttactcctgacataagttatcagtctgaaaccaacaaaagttctcaaaccgaaaccattttttttcttctaattttagcaacagtgaccttgaccttaattccagtagcccaaatattcccaaccttcatcccatccagtctaacaaccacacaccaaattcatggcaaattca
gi|4 : tgagtccattgtcatgataagggtgagttatcaaccaaatgtttgctccgaaaacaacataaaagagaaacacaactaggcttaggatgcaaaatC-CTA-TCAAACAGC------T-------G-TTTGA------GGTCATT--CACAATAGGAAGGAGGGG---TGGGGGGGGAGCTTTATTAACAGGTTTTGTATAACTAAAGTAATAGCAGATAAG-ACGCCGTGGTTGCA---ATGC-TAATTCATAC-------T-T--------TTCG----CCAGATTCTT-TAAATATA---------------ATATTTTGGGAGGAGGACGT--AAGCTTGTTACTATTTA------TATCTCTCAA-TC-----TT----GATAGAAGTTAT---CA-GTC-AAAAACCATTTTT--CCT-CT-TTTAGCAATG---GTGACC-------TTGACCCCG----------A-T-ATACAATCCCAAGTATTCCTCTCCATCCAGTCTACC--------AGGTTT-CATGACAATAT---TTGAT-----TCTA------------------------AACAAAAGT---TATattca
gi|5 : ctTATTGTTAATATA---------------AT--TCAAGGCATATGATTC--AAGTTTGTTA-TGTTTA------T--------A-TCTCTCGCTCGTAGACAAG-GTTAC---CA-GTG-GGAAACCGTT--------ATTGTTTAGCAACG---ATGACC-------TT-ATTTTTGT--------A-T-ATACATTATGAAGC-TTTCTTCCTGTTCTTTCT---CAGAAAACA------CATAGCAGTAT---TTCAC-----TCTT------------------------AACAAAAGT---TTTCCGTGTTTGAAACCT-TATTTT------CC-A-GTTCTAATAACTG------TAATATTGACCTTGATC------CCA-------GTGGCCCTA-CATGTAA-TCACAAACTCTTCAATTTT---TTTAGTCT-AC--CCATACACCAAGATTAATGGCAATATCTC-CTCCAAATAAAAA-GTTATCAataatagttgaaacacaaagggatggg
gi|6 : tatattaaccaC-CCA-TCAAACAGC------TGGTTGCCA-TT-GA------GTCCAATGCCAAGATAGG-------GA---TGA---------TTAATCAATGGGTTTTGTGTTACT-AAACAATAGa
gi|6 : AACC-CTCCTCTTGATTCATTCTACTTACACACCA-GTTA-CATGGAGACATTGCCTTACAATACTCCT------------------------TACAAAAGTAATTATCAAT--GGGAAGCCA-T-TTTT------CT-A-TTTTAAGCAATGG------T------GACCTTGACC------CCA-------GAAGCCCCA-TATGAAA-T----A-------------CCATCCAGTCT-AC--CTA-----CAAGTTTCATGACaagaaccctcctcttgattcattctacttacacaccagttacatggagacattgccttacaatactccttacaaaagtaattatcaatgggaagccatttttctattttaagcaatggtgaccttgaccccagaagccccatatgaaataccatccagtctacctacaagtttcatgac
gi|7 : cccatcaaacagctggttgccattgagtccaatgccaagatagggatgattaatcaatgggttttgtgttactaaacaatagaagCAATAT---CTCAC-----TCAT------------------------AATAAAAGT---TATCAGT--CCAAAACAA-T-TTTT------CT-A-TTTTTAGCAATGG------T------GACCTTGA-C------CAA-------GTGACAGTATTATACAT-TA-CTGAC-CTTC--CTCTCCAT---------C--CTACATACCATGTTTCATGGAAATATCTCATTCCCAAC-AAAA-GTTACCAGTTGAAATACAAAAGGATGGGATGTGATTCCCACAA----TGT-CAGAGCCC---CCAT--CTG-----ACCC--CAAAC--CTTGTTTT-CTGGGTTTTGAAAATAATTA
gi|8 : TTTA--TATATA-TTTAGCTACA---ATGACC-------ATTACCCCAGTAGCCC---AAT-GTACAATCCCAACC-TTTCTCTGCATCAAGTCTACTCACACACCAAGTTT-TATGGGAATTT---CTCAC-----TCCT------------------------AATGAAATT---TATCAGA--CGAAAACTGTT-TTTT------CTAA-TTTTTAGCAATGGTGAGCTT------GACTTTGACT------CAA-------GTGACACTA-TATACAATTC-CAAAA-CTTC--CTCTCCATCTAGTCT-AC--CCACAGA-TAAGTT
gi|9 : -------A-TC-AA------GTCCATCATCACAAAAGG-------GAGTATGA---------TATATTACTGGGTTTTGTGTTACCAAAACAGTAGAA-GAAGAAACAC-------ACA---A--CTTAGG-C-TAG-------C-T-GC-----TAA------TAT-TTATT-------------------------T--TCAGCCA----GATT----ACCTCACT----TTTA-------------------------------ACAAAAATTAT---CA-GTT-GGAAACCTTTTTTTATTTATA-TTAAGTAATG---AT-CCC-------TTGATCCCAGT----------T-A---------AACT-TTTCTCTCCATCCAGTgtat
blockSeqs : . T A TGGATGCC G T CATTAT T AAGGAGG GTA GGGGGGAGC C AGCAGA G CCGTGGTT CTTA T C A TTGGCTAATGCAAACT CCAT GTT TATATACATGTAATA AT TTC C A TATCTCTCGCTCGTAG G CTG T TGA G TAT A GT . T ATGACAT A GACCTTATA T A C A CA A A T TGC AATAC C GACATAAGTTATCAGTCTGAAACC AAT GT T T A TTTCTT A . TA TAATATT C TTAATT TATATAC C T TCA C T AA TA CC A AA T A C T A T A T G T TG CC . . . . . . . . TTTGAAA
blockSeqs : . . TGGTTGCC . T . T . . . G AGAAG G A ATG . C . GATGC . TC . . T . T TATCTCTCACTCCCA A . . AG A T T A . A . A GACCCAA . T A . CC T A . . . T . . . C . . . . . TA TGAGCTT C . . C . TTC C . . TC GA . . C C C A A A . . . . AA
blockSeqs : . . CGGTTGT . . . T . . . A ATAA A G A . C . GTAT . TT . . T . A TATCTCTCAATCTTG A . . AA A T T A . T . T GATCCTA . A C . AC C G . . . T . . . T . . . . . AA T T . . A . CT C . . TC CC . . T C C T . C . .
blockSeqs : . . T . . . T . . . C . . C A . T . CTGC . TT . . T . G TATCT A . . GG A C A T . A . G AGCCCAA . A C . TT A A . . . C . . . G . . . . . TA T C . . T . TG A . . C TT . . C T C T
blockSeqs : . T . . . T . . . C . . C A . . . AGC . TA . . C . . . . . . GG G T A T . A . T A . T A . TC C . . . . A . . . C . . . . . TA T C . . C . TC T . . T CC . . C G . T
blockSeqs : . . . C . . . A TT . T . . . . . . T T C A T . A . A A . A C . C C . . . . C . . . G . . . . . T T . . . T . TA A . . C CT . . . . . .
blockSeqs : . . . A . . . G . . . . T A T . A . A . . . . . C . . . . . . . . . T . T . . . . . . .
blockSeqs : . . C . . . G . . T . C . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons : TGGTGC******** AA**** NTGC************** TATCTCTCGTCTG****************** *** CA********
originalCons : NAACACAACTAGACCTATCACTGAAAGTGATTGATACC-CCA-CCAAACAGC------T-------A-TC-GA------GTCCATTGTCACGATAGG-------GG---TGA---------TTTATCAACGGGTTTTGTGTTACTAAAACAATAGCA-ATAGGGACAC-------ACA---A--C-TAGGCC-TAG-------G-T-GC-----TTAG----GTACATTATT-TTAATATA---------------AT--TCAGGGAAGATGATTT--AAGCTTGTTA-TATTTA------T-----T--A-TC-----CT----GACAAAAGTTAC---CA-GTC-GGAAACCGTTTTT--TCTATT-TTTAGCAACG---GTGACC-------TTGACCCCAGTGACCC---A-T-ATACAATCCCAACC-TTCCTCTCCATCCAGTCTACCCACACACCAAGTTT-CATGGCAATAT---CTCAC-----TCCT------------------------AACAAAAGT---TATCAGT--CCGAAACCA-T-TTTT------CT-A-TTTTTAGCAACGG------T------GACCTTGACC------CCA-------GTGGCCCCA-TATACAA-TC-CNAAC-CTTC--CTCTCCATCCAGTCT-AC--CCACACACCAAGTTTCATGGCAATATCTCATTCCTAAC-AAAA-GTTATCAGTTGAAA-ACAACGGAATGAGATGCGATTCCCACAAAGTTTGTACAGAGCCCCAACCATGCCTGCCCCCACCCTGCAAACCTCTTGTTTTGCTGGGTTTTGAAAATAATTA
finalCons : NAACACAACTAGACCTATCACTGAAAGTGATTGATACC-CCA-CCAAACAGCTGGTGC--------A-TC-GA------GTCCATTGTCACGATAGG-------GG---TGA---------TTTATCAACGGGTTTTGTGTTACTAAAACAATAA----TAGGGACAC-------ACA---A--C-TAGGCC-TAGNTGC--------------TTAG----GTACATTATT-TTAATATA---------------AT--TCAGGGAAGATGATTT--AAGCTTGTTA-TATTTATATCTCTCGTCTG------------------ACAAAAGTTAC---CA-GTC-GGAAACCGTTTTT--TCTATT-TTTAGCAACG---GTGACC-------TTGACCCCAGTCA--------T-ATACAATCCCAACC-TTCCTCTCCATCCAGTCTACCCACACACCAAGTTT-CATGGCAATAT---CTCAC-----TCCT------------------------AACAAAAGT---TATCAGT--CCGAAACCA-T-TTTT------CT-A-TTTTTAGCAACGG------T------GACCTTGACC------CCA-------GTGGCCCCA-TATACAA-TC-CNAAC-CTTC--CTCTCCATCCAGTCT-AC--CCACACACCAAGTTTCATGGCAATATCTCATTCCTAAC-AAAA-GTTATCAGTTGAAA-ACAACGGAATGAGATGCGATTCCCACAAAGTTTGTACAGAGCCCCAACCATGCCTGCCCCCACCCTGCAAACCTCTTGTTTTGCTGGGTTTTGAAAATAATTA
Alignments
lowQualScore : 11 444444444 1111111 111111111 3333333333333333333333333333 111111 111111 555555555555555555 1111 333333333333333 4444444444 1111 666666666666666666 111 11111 555555555555555555555555 111111 2222222222222 1111111 111111 1111111 11 1 1 1 11 2222 1 222 11 22222 11 11 1 3333333
lowQualScore : 88 8 6 555555555 5 0 4 4444444 777 777777777 1 0 66 0000000000000000000000000000 111111 111111 333333333333333333 1 2222 5 2 111111111111111 66 77 7 6 99 3333333333 1 3 0000 5 777 7 999999 4 777 0 2 111111111111111111 0 1 4 1 7 5 000 44444 1 555555555555555555555555 888 77 4 5 5 444444 4 4 2 2222222222222 4444444 0 222222 4444444 2 4 4 00 2 4 666 55 11 4 66 0 4 1 1 3 1 0 0 6 3 44 77 4444 5 111 77 55555 88 88 5 3333333
lowQualScore : .. . . ......... . . . ....... ... ......... . . .. ............................ ...... ...... .................. . .... . . ............... .. .. . . .. .......... . . .... . ... . ...... . ... . . .................. . . . . . . ... ..... . ........................ ... .. . . . ...... . . . ............. ....... . ...... ....... . . . .. . . ... .. .. . .. . . . . . . . . . . .. .. .... . ... .. ..... .. .. . .......
lowQualScore : 00 0 7 777777777 0 1 4 4444444 888 888888888 9 3 11 6666666666666666666666666666 888888 222222 333333333333333333 7 1111 0 2 222222222222222 99 99 3 7 22 0000000000 0 6 4444 7 999 4 999999 4 888 2 4 888888888888888888 2 4 4 7 1 7 000 33333 7 000000000000000000000000 888 99 0 7 7 444444 4 4 0 1111111111111 4444444 1 888888 4444444 7 4 4 11 6 4 222 77 00 4 11 2 5 4 7 2 2 0 0 7 3 33 55 0000 5 000 55 00000 00 00 0 0000000
consensus : NAACACAACTAGACCTATCACTGAAAGTGATTGATACC-CCA-CCAAACGGCTGG-TT-G-C-A-TCGAGTCCATTGTCACGATAGG-------GG---TGA---------TTTATCAACGGGTTTTGTGTTACTAAAACA--AT---A----A-AGA---GACAC-------ACA---A--CTAGGCC-TA-GNT-G------------CTTAG----GTACATTATT-TTAATATA---------------AT--TCAGGGAAGATGATTT--AAGCTTGTTA-TATTTA--TATCTCTCA--TCT----GACAAAAGTTAC---CA-GTC-GGAAACCGTTTTT--TCTATT-TTTAGCAACG---GTGACCTTGACCCCAGT----C---A--------TATACAATCCCAACC-TTCCTCTCCATCCAGTCTACCCACACACCAAGTTT-CATGGCAATAT---CTCAC-----TCCT------------------------AACAAAAGT---TATCAGT--CCGAAACCA-T-TTTT------CT-A-TTTTTAGCAACGG------T------GACC-------TTGACC------CCA-------GTGGCCCCA-TATACAA-TC-CCAAC-CTTC--CTCTCCATCCAGTCT-AC--CCACANACCAAGTTTCATGGCAATATCTCATTCCTAAC-AAAA-GTTATCAGTTGAAA-ACAACGGAATGAGATGCGATTCCCACAAAGTTTGTACAGAGCCCCAACCATGCCTGCCCCCACCCTGCAAACCTCTTGTTTTGCTGGGTTTTGAAAATAATTA
Reference ( family-1096 ) : NAACACAACTAGACCTATCACTGAAAGTGATTGATACC-CCA-CCAAACAGCTGG-T--G-C-A-TCGAGTCCATTGTCACGATAGG-------GG---TGA---------TTTATCAACGGGTTTTGTGTTACTAAAACA--AT---A----ATAGG---GACAC-------ACA---A--CTAGGCC-TA-GNT-G------------CTTAG----GTACATTATT-TTAATATA---------------AT--TCAGGGAAGATGATTT--AAGCTTGTTA-TATTTA--TATCTCTCG--TCT----GACAAAAGTTAC---CA-GTC-GGAAACCGTTTTT--TCTATT-TTTAGCAACG---GTGACCTTGACCCCAGT----C---A--------TATACAATCCCAACC-TTCCTCTCCATCCAGTCTACCCACACACCAAGTTT-CATGGCAATAT---CTCAC-----TCCT------------------------AACAAAAGT---TATCAGT--CCGAAACCA-T-TTTT------CT-A-TTTTTAGCAACGG------T------GACC-------TTGACC------CCA-------GTGGCCCCA-TATACAA-TC-CNAAC-CTTC--CTCTCCATCCAGTCT-AC--CCACACACCAAGTTTCATGGCAATATCTCATTCCTAAC-AAAA-GTTATCAGTTGAAA-ACAACGGAATGAGATGCGATTCCCACAAAGTTTGTACAGAGCCCCAACCATGCCTGCCCCCACCCTGCAAACCTCTTGTTTTGCTGGGTTTTGAAAATAATTA
gi|1 : AATACAACTAGATCTATCACTGAAAGTCATTCATACC-CCA-CCAAACAGCT----------A-TCGGGTCCATTGTCAAAATAGG-------GG---TGA---------TTTTTCAATGGGTTTTGTGTTACTAAAACA--ATGGCA----ATAGG---GACAT-------ACA---A--CTAGATC-TA-GGTTG------------CTTAG----GTACATTATT-TTAATATA---------------AT--TCAGGGAAGATGATTT--CAGCT----A-CATGTAGTTATC--------CT----AACAAAAGTTAC---CA-ATC-AGAAACAATTTTT--TCTATT-ATTATTAATGAAAGTGACCTTGACCCCAGTGACTC---A--------TATACAATCCCAACC-TTCCTTTCTATCCAGTCTACCCTCACACCAAGTTT-CATGGCAATAA---CTCAT-----TCAT------------------------GACCAAAGT---TGTCAGT--CTGA--TTA-T-CCCC------CC-ACTTTTTTGCAACAG------A------GACC-------TTGACT------CCA-------GTGACCCAA-TATTCAA-AC-TAAAC-TTTC--CTCTCCTTCCAGTCT-AC--CCACACATCCTGTTTCATGGCAATATCTTATTCATAAC-AAAA-GTTATCAGTTGAAC-ACAACAGAATGAGCTGCGATT--CACAAAGTTTGTATAAAGCCCCAACCATGCCTGCCCCCACCCTGCAAACCTCTTGTTTTGTTGGGT-------ATAATTA
gi|10 : gA-CCAAATGGCTGGAT--G-CCA-TCGGGCCCATTGTCATGGTAGA-------GG---TAA---------TTCATCAACCGGTTAAGTATAAGTGAAACt
gi|10 : AAGT---TATCAAT--CTGAAACCA-T-TTTT------CT-A-TTTT----AACA-------------------------------------CCA-------GTAGCCCCA-TAAACAA-CT-CCAAC-CTCC--CTCTATATCCAGTAT-AC--cacagcatgttattttgtagaatctaagatacatacacccaccatgtcttgtagtaagttatcaatctgaaaccatttttctattttaacaccagtagccccataaacaactccaacctccctctatatccagtatac
gi|11 : accaaatggctggatgccatcgggcccattgtcatggtagaggtaattcatcaaccggttaagtataagtgaaaccacagcatgttattttgtagaatctaagatacatacacccaccatgtcttgtagt-A-TTTTT--CAATGG------T------GACC-------TTGACC------ACATATATACATGTCGCCA-TATAGAA-TG-CCAGC-CTGC--CTC--AATGAAGCCT-AT--CCATGAACCAAGTGCCATGACAGTATTTCATTCCTAAC-AAAATGTTATCA-TTAGAA-ACAATGCAATGAGA
gi|12 : ttacaataggaaaacAA----GTATATTATT-T-AATATA---------------GT--TCAGGGAATATGATTTTCATGCTTGTTA-TATTTA--TATCTCTCACTCCC----AACAAAGGTCATCTGCA-GTC-AGAAACAGTTTTT--------------------------CCTTGACCCCAGTGA--CCCAA--------TATACAATCCTAACC-TTCCTCTCCATTCAGTcagaaaaggatg
gi|13 : AACACA--TAGACAAATCATTGTATGTGATTGATATC-CCAACCAAACAGCCGG-TT-G-T-AGTCTAGTCCATTGTCATGATAGC-------GG-------------------TCAAAGGGTACTGTGTTATTAAAATA--AT---A----a
gi|14 : TTTATGTTACTATAACA--AT---T----A-AGA---GA-A--------ACA---A--CTTGGCC-TA-GTT-GGCTAATGCAAACTTTAGCCATATACATTACT-TCAATACA---------------AT--TCAGGGAAGATGATTT--AAGgaa
gi|15 : TTT------CT-A-TTATTAGTAACAA------T------GTCCATGACATTTTACC------CCA-------GTGATCCTA-TATACAT-TA-CCAAC-CTTT--ATCTCTATCTAGTCT-AT--CAGCAAAC
gi|16 : gtgAAATGGCTGG-TT-GTC-A-TTGAGTCAATTGTCATGATAGG-------AG---AGA---------TTTATCAACAGGTTTTGTGTAAGTATTACA--GT---A----ga
gi|17 : AGATCACTTTT--TCTTTT-AATAGCAACA---GTGACCTTGACCcatta
gi|18 : accattagaagtttaagcttataaaccAG----GTACATTATC-TTAATATA---------------AT--TCAGGGAAGATGAttaa
gi|2 : ACCTATCCCTAACAGTGAGTGACACCTCCA-CCAAACAGCTGT-TTGA-C-A-TTATGCCCACTCTCATGATGTG-------GA---TGA---------TTTATCAATCAGCTTCGTGTCAC-AAAACG--AT---------TGGG---GACAG-------ACACTTA--CTATGCT-TA-AA--G------------CTT
gi|2 : aaaaacaTCAG----GAACATTATT-TTAATATATATATACATGTAATAAT--TCAGGGAAGATGACTT--AAGCTTGTTA-TTTTTA--TATCTGTCA---CT----GA-----------------TC-T--AACC--TTTT--CCTTTT-TTTAACAATG---GTGTCTTTGCCCTCTGT----G---ACCTTATATTATGCAATCCCAACC-GTCATCTCCATTAAGTCTACCCACATACCAAATAT-CGTGGCAATgccaaattttgtattcatgcgctatttagccaaattttgtattcaggaacattattttaatatatatatacatgtaataattcagggaagatgacttaagcttgttatttttatatctgtcactgatctaaccttttcctttttttaacaatggtgtctttgccctctgtgaccttatattatgcaatcccaaccgtcatctccattaagtctacccacataccaaatatcgtggcaat
gi|3 : aaaaacaacctatccctaacagtgagtgacacctccaccaaacagctgtttgacattatgcccactctcatgatgtggatgatttatcaatcagcttcgtgtcacaaaacgattggggacagacacttactatgcttaaagcttgccaaattttgtattcatgcgctatttagccaaattttgtatGAGTCCATTGTCATGATAAG-------GG---TGA---------GTTATCAACCAAATGTTTGCTCCGAAAACAACAT---A----AAAGA---GAAAC-------ACA---A--CTAGGCT-TAGGAT-G------------C
gi|3 : tAAGTGAC---AATGTCTGAAAAATATTTTT--TCTATT-TATAGCAACA---GTGACCTTGACC---------------------------------------TTCTCCCCATCCAGTCTAAACACACATCAAGTTTTCA-GGCAATAT---CTTAC-----TCCTGACATAAGTTATCAGTCTGAAACCAACAAAAGT---TCTCAAA--CCGAAACCA-T-TTTTTTTCTTCT-A-ATTTTAGCAACAG------T------GACC-------TTGACCTTAATTCCA-------GTAGCCCAA--ATAT---TC-CCAAC-CTTC--ATC-CCATCCAGTCTAACAACCACACACCAAA-TTCATGGCAAaaaataagtgacaatgtctgaaaaatattttttctatttatagcaacagtgaccttgaccttctccccatccagtctaaacacacatcaagttttcaggcaatatcttactcctgacataagttatcagtctgaaaccaacaaaagttctcaaaccgaaaccattttttttcttctaattttagcaacagtgaccttgaccttaattccagtagcccaaatattcccaaccttcatcccatccagtctaacaaccacacaccaaattcatggcaaattca
gi|4 : tgagtccattgtcatgataagggtgagttatcaaccaaatgtttgctccgaaaacaacataaaagagaaacacaactaggcttaggatgcaaaatC-CTA-TCAAACAGCTG--T--------TTGAGGTCATT--CACAATAGGAAGGAGGGG---TGGGGGGGGAGCTTTATTAACAGGTTTTGTATAACTAAAGTA--AT---A----GCAGATAAGACGCCGTGGTTGCA---ATGCTAATTCATA-CTT---------------TTCG----CCAGATTCTT-TAAATATA---------------ATATTTTGGGAGGAGGACGT--AAGCTTGTTACTATTTA--TATCTCTCAA-TCTT---GATAGAAGTTAT---CA-GTC-AAAAACCATTTTT--CCT-CT-TTTAGCAATG---GTGACCTTGACCCCG----------A--------TATACAATCCCAAGTATTCCTCTCCATCCAGTCTACC--------AGGTTT-CATGACAATAT---TTGAT-----TCTA------------------------AACAAAAGT---TATattca
gi|5 : ctTATTGTTAATATA---------------AT--TCAAGGCATATGATTC--AAGTTTGTTA-TGTTTA--TATCTCTCG---CTCGTAGACAAG-GTTAC---CA-GTG-GGAAACCGTT--------ATTGTTTAGCAACG---ATGACCTT-ATTTTTGT--------A--------TATACATTATGAAGC-TTTCTTCCTGTTCTTTCT---CAGAAAACA------CATAGCAGTAT---TTCAC-----TCTT------------------------AACAAAAGT---TTTCCGTGTTTGAAACCT-TATTTT------CC-A-GTTCTAATAACTG------TAATATTGACC-------TTGATC------CCA-------GTGGCCCTA-CATGTAA-TCACAAACTCTTCAATTTT---TTTAGTCT-AC--CCATACACCAAGATTAATGGCAATATCTC-CTCCAAATAAAAA-GTTATCAataatagttgaaacacaaagggatggg
gi|6 : tatattaaccaC-CCA-TCAAACAGCTGG-TT-G-CCA-TTGAGTCCAATGCCAAGATAGG-------GA---TGA---------TTAATCAATGGGTTTTGTGTTACT-AAACA--AT---A----a
gi|6 : AACC-CTCCTCTTGATTCATTCTACTTACACACCA-GTTA-CATGGAGACATTGCCTTACAATACTCCT------------------------TACAAAAGTAATTATCAAT--GGGAAGCCA-T-TTTT------CT-A-TTTTAAGCAATGG------T------GACC-------TTGACC------CCA-------GAAGCCCCA-TATGAAA-T----A-------------CCATCCAGTCT-AC--CTA-----CAAGTTTCATGACgaagaaccctcctcttgattcattctacttacacaccagttacatggagacattgccttacaatactccttacaaaagtaattatcaatgggaagccatttttctattttaagcaatggtgaccttgaccccagaagccccatatgaaataccatccagtctacctacaagtttcatgac
gi|7 : cccatcaaacagctggttgccattgagtccaatgccaagatagggatgattaatcaatgggttttgtgttactaaacaatagaagCAATAT---CTCAC-----TCAT------------------------AATAAAAGT---TATCAGT--CCAAAACAA-T-TTTT------CT-A-TTTTTAGCAATGG------T------GACC-------TTGA-C------CAA-------GTGACAGTATTATACAT-TA-CTGAC-CTTC--CTCTCCAT---------C--CTACATACCATGTTTCATGGAAATATCTCATTCCCAAC-AAAA-GTTACCAGTTGAAATACAAAAGGATGGGATGTGATTCCCACAA----TGT-CAGAGCCC---CCAT--CTG-----ACCC--CAAAC--CTTGTTTT-CTGGGTTTTGAAAATAATTA
gi|8 : TTTA--TATATA-TTTAGCTACA---ATGACCATTACCCCAGTAGCCC---AA-------TGTACAATCCCAACC-TTTCTCTGCATCAAGTCTACTCACACACCAAGTTT-TATGGGAATTT---CTCAC-----TCCT------------------------AATGAAATT---TATCAGA--CGAAAACTGTT-TTTT------CTAA-TTTTTAGCAATGGTGAGCTT------GACT-------TTGACT------CAA-------GTGACACTA-TATACAATTC-CAAAA-CTTC--CTCTCCATCTAGTCT-AC--CCACAGA-TAAGTT
gi|9 : -C-A-TCAAGTCCATCATCACAAAAGG-------GAGTATGA---------TATATTACTGGGTTTTGTGTTACCAAAACA--GT---AGAAGA-AGA---AACAC-------ACA---A--CT------TA-G---G------------CT-AG----CTGC--------TAATAT-----------------T--T--------AT--TTT--CAGCC----A-GATT-----ACCTCACT--TTT----AACAAAAATTAT---CA-GTT-GGAAACCTTTTTTTATTTATA-TTAAGTAATG---AT-CCCTTGATCCCAGT----T---A-------------------AACT-TTTCTCTCCATCCAGTgtat