lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 1111 11111 22 111 77777777777777777777777 111111111111 111111 1111111 1111111111 111111 22 1 222222 111111111 1 22 66666666666666 1111 1111 11 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 11 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666
lowQualScore : 2 2222 55 4 00000 7 55 9 7 3 33 0 000 11111111111111111111111 4 44 5 11 1 444444444444 99 7777 4 7777 333333 55 3333333 7777777777 777 2 444444 33 5 3 4 6 0 222222 7 6 666666666 4 55 1 5 11 33333333333333 5 2 0000 0000 5 3 1 99 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 2 7 9 6 88 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999
lowQualScore : . .... .. . ..... . .. . . . .. . ... ....................... . .. . .. . ............ .. .... . .... ...... .. ....... .......... ... . ...... .. . . . . . ...... . . ......... . .. . . .. .............. . . .... .... . . . .. ........................................................................................... . . . . .. .........................................................................................................................................................................................................................................................................................................................................................................................
lowQualScore : 2 0000 55 0 00000 3 55 1 9 6 99 9 333 88888888888888888888888 0 88 7 77 8 999999999999 77 7777 4 7777 333333 55 0000000 5555555555 000 0 888888 66 7 9 4 1 1 222222 9 1 000000000 0 55 6 0 55 00000000000000 1 2 5555 6666 0 6 7 00 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 0 7 7 33 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
consensus : TACTGAAACGA---AAA--A-G-----AAACG--CATAGGTGTT-TTT-GTGCAATATTTT-TTAAT--G--TTA----TG----C----ATCA-AACAAATAATAATTTCTATTTTGCCTATTGAGTGT---T--------TGACCGACAATAT-A-AAGTAC-ATTA---GTAAC----GGTTGAC--TAGCGC--TATTGAA----------ACAATA-CCACGCTA---AGCACGAAAACAANATTTCC-TCGTGCACAGTCACCC-ACGTGACAATTTAC---------A-C--AATGGTTCACATT-TTAAAACATTTCCCCA-----TAACAATCAT---CTTACACA----T-ACGGACCACTTT-GAATACAT-------------NAACCA-G----CACGGCTACGCCAAA-TNAACGTGAN-CGCG-ACGTTAC--TGC---TTCAAAGAATGGCGTAA-CGCAGGTTGCAAGACTGCTGAATGCCAACCATTCCG--CAATA------GTNAATCGTT----GC-AAANACTACGTAATACTTGCACGA-CCGCTGANAGATCACGTG-TGGGCG-------N-------TA----A----CGACGCCCGGGCAAGAC-----CGTACCATACGTCTAGTTCACCTACNAAATCGGTTCCAAACTGCCGCCGAGGCNG-CTCTAAACA----CG-CNC-----G-TGCGCATA--ACAACAGAATACATCC-GA-ACTGTGAGAAACCGATTGNACGAAATTGGCATCANAG-CC---TTAGATC--AT-ATACGTTGGAAA-CCGTAAACGCCGC-GTAG-----AA-ACG-ATG--GATGGTCACT--------TG--AT--T-GAC--T-----GGATTTTAGTGATAGTGTTG
Reference ( gi|1 ) : TACTGAAACAA---GAA--A-G-----AAATG--CAGAGGTATT-TTA-GTGCAATATTTT-TTAAT--A--TTA----TG----C----ATCA-AATAAATAATAATTTCTATTTTGTCTATTGAGTGT---T--------TGACCAATAATAT-A-AAGTAC-ATTA---GTAAC----AGTTGAC--TGGAGC--TATTGAA----------ACAATA-CCATGATA---AGTTTGAAAACAAGATTTTC-TAGTGCACAGTCATAC-ACATAACAATTTAC---------A-C--AATGGTGCACATG-TTAAAACATTTCCCTAGT---TAACAATCAT---TTTACACA----T-ACAGACCACTTA-GAATACAT-------------AAACCACG---CCTTGGCTATGACAAAGTTAACTTGAG-CGCG-ACGTTAC--T-C---TTCAAAGAATTGTGCCATTGCAGGTCGCAAGACAGTTGAATGCCAACCATTCCA--CAATACAGTAAGTAAACCACT----GCAAAAGACTATGCAATACTGGCAC-A-CCATGGACAGATCAC-----------------T-------TA----A----CAACACCCAGGCAAGAC-----TGTACCATGCGTCTAGATTACCTATTGAATCGGTAACAAACTACGGTTCAGGCAG-CTCTAAGCA----CGGCCT-----A-TGCGCAGA--ACAACAGAATACATCCAGATACTGTGGGAAACCAATAGCGCAAGGTTGACATTAAAGCCC---TGAGATC--ATAGTACTTTGGTAT-CCATTAACACCAC-ACAA-----AA-ACA-ATG--GATAGTCACT--------TG--AT--T-GAC--T-----GGATTTTAGTGATAGTGTTG
gi|2 : TACCGAAACGA---AAA--A-G-----GAACG--CATGGGTATA-TTT-GTGCAATATTCCGTTATTGCA--TTTGGGTTG----CTTCAATCA-CATGATTATTAATTTTTATATTGTCTATTGACTGT---T--------TGACCGA--ACAT-A---GTAT-ATTC---GTAAC----GATTGAC--TTGTAC--TATTCAA----------ACAATA-TCATGTTA---AGTACGAAAACAATATTTCC-TTTCGCACAATCCCCT-ACGTGGCATTTTAC---------A-C--AATGGTTCACATT-TTG---TATTTCCC-A------AACAATCTT---ATAACACA----TTACTGACCA-TTACGAA-ACGT-------------GTACCACG--------GCTGCGCCAAA-TGAAC--GAGACGTT-ACATTGC--TGC---TTCAAAG-----------TACAGGCTGCATGACTGCTAAATGCCAAC--TTCTATTCAATAC-----GTCGACT-TT----GGCAAATACTGCGTAATAATTGCACGA-CCGCTGATAGATTAC-----------------G-------TA----GTGGGCGACTTTCAAGTTAGAC-----CGTATTATATCTCTGGTGTACCTTCTGAATCGGTTTCAAACT---------GCCG-TTCTAAACA----CG-CGT-----GGTACACATA--AAAACAGAATAT----------TGGAAGAAACCGATTGCACGTAATTGACAT--AAGACCATTTAAGCT------ATATGTTGGGAA-CCGTAAACACCAT-GTAG-----AAGACA-ATG----T-GTCACA--------TGGGATAAT-GAC--TTTAATGGATTTTAGTGATATTGT
gi|4 : taTACTGAAACGA---AAA--A-G-----AAGCG--CATAGGCATT-TTT-GGACAATATTTT---AAT--GGGTTA---------------ATTAGAATACATAATAATTTCTATTTTGCCTACTAGGTGC---T--------TGAACAACAATGTCA-AAGAAC-ATTAATAGTAAC----GGTTGAC--TAGCGC--TTTAGAA----------ACAATA-TCACGCCA---CGCACGAAAACAATATGTAT-TCGTGCACAGTTACCC-ACGTGACAATTTACAAAAAAATTA-CAAAATTGTTCACATT-TTAAAGTATT----CAG----TAACTAACAT---CTTACACA----T-ATGGAGCACTAT-GGATATATTAAAATGTGAAAAAAATCAGGATACCACGGCTACGCCAAACTTAACGTGGT-CGTG-CCGTGACGAG-CTGATTTAAGGAATGATGTAATGGCAGGTCATAAG
gi|14 : aTACTTAAACTA---AAA--A-G-----AAACGGGTATATGTGTT-TT--GTTCAATAAATT-TTACT--G--GAA-----G----C----TTTA-ACCAATCAGTA-TTTGTGTTTTATCTGTTCAGTGTAGTT--------TGACTGGCCATAT-A-CAGTAC-ATTA---GTAAC----GGTTTAC--T--AGCTTTATTGAA----------ACAATA-TCA
gi|20 : TACTGAAACGA---AGA--A-G-----AAACG--CACAGGTATT-TTT-GTGCAAT
gi|16 : ataTACTGAAACGA---ACA--A-G-----AAGGA--CAAATGTAGT-TTT-GTGCAATA-TTT-GTAATGGG--TTA----------A----ATCA-ACCAAATAATAAT
gi|3 : ACTGAAACAACTTGAA--ACGCTCATAAA-G--TAGGAACTTT-TTAAGTGAAATTTTTG-TTAAT--G--TGT----TG----C----ATCA-AACAAATAATAATTTTTATTACATCTGTTGAGTGT---T--------T-ACCGACAATAT-A-GAGTAC-ATCA---GTAAC----GGTTGCC--TAGCGC--TATT----------------ATA-CCACGTTA---AGTATGAAAACAAGATTCCC-TTGTGCACATTCATCT-ACGTGATATTTTAC---------A-C--AGTTATTTACATT-TGAAAACATT---CCA-----TAACAATCGT---TTTATACA----T--CAGACCACTTT-GAATACCT-------------TAA----G---ACATGAA-AT-ACAA---CAGCATGAA-CGCGAACGTTACT-T-C---TTCAAAGAA-TG-------GCAGGTTACGAGACTGCTGAATGCCAACCACTCCA--CAA---------TAAATCGTTCTTGGC-CAAGACTACATAATACTTGCACGA-CCGCGGAa
gi|5 : ACTGAAACAA---ACA--A-A-----AAACG--TACAGGT----------GCAATAGTTT-T-AAT--GGGTTA----------C----ATCA-A-CAAATAATAATTTCTATTT-GCCTACTGAGTGT---T--------TGACCAAC-----------------TA---GTAAC----G--TGAC--TATAGC--TATTGAA----------A-AATGTCCACGCTA---AGCACGAAAATCACATTTTCATCGTGCA--GTTACCC-ACATGATAATTTAC---------A-C--ACCAGCTCATATG-TTAAAACACTTTCC--------AACTATCAC---CTTACACATTGGT-ACGGATAACTTT-GAATGTAT-------------tttatcatgcagtgggtgtccacgattaga
gi|10 : aACTTAAATAA---AAACTA-A-----ACATA--CAGAGGT-TT-TT--GTGCAATATT-----AAG--G--TTA----------C----ATCA-AACATGCAATAA-----ATATTATC-ATTG----T---T--------TGAATATTAATAT-A-AAGTATGATT----GTAAT----ATTTCAG--TAGCAT--TTTTGAA----------ACTGTA-GAACACTT---AGCACGAAAATAATATTTCC-TTGTACACAGT--TACTACATGGCTATTTAC---------A-C--AGTGGTTCATGT--TTAAAACA-TTCCCTAAC---TATCAtgaaatgtggaaaaaaaagacgacacggttactccaaactgaaggtgaacacttttgcttcaggtaattgcacaaacacat
gi|9 : GAAACGG---AAA--A-G-----AAACG--CATATATGTG-TTGTGTGCGGTATTTT-T-AATG-A--GT-----TT----C----ATCA-AACAAA-AATAA----------------TAAA-----------------ATCAAAATTAT-A-AAATAT-GTTC---GTAACGATTAATTAACCTTGTAG---TAT-AAA----------ACAATA-TTATGTTACTGAGTACGAACACAATATTTTC-TTGTGTACAGTCACCT-ACGTGACA-TTTAC---------AAC--AAT-----AAATGATTCACACAT------AGTGTCTAACAGTCAT---TTTACACA----T-ACGCTCCATTTT-GAATACAct
gi|12 : A--A-G-----AAATG--CATAGGTGTTGTTT-GTGCAATATCTT-TTTAT--C--GTC----TG----C----ATCA-AAAAAATAGTAATTGCTA-TTTGGATATTGAGTGT---T--------TGGCTGACAATAC-ACAAGTAatgacacgtggaaaaaaagat
gi|11 : TT-TTG-TTACAGTATTTG-TTGA--------A----TGGGTTC----ACCA-AACAAATAATAATTTCTATTTTGCCTATTGGGTGT---TATAAACTTTGGCCGACAGTAT-T-AACTGC-ACTA---GTAAC----GGTTGAT--TGGCGC--TATTGAT----------ACACTA-CAACGCTT---AGCAAAAAAACAAAATTTCC-TCGTGCTCAGTAACCC-CGGTGACTATTTAC---------A-C--AACGGTTCACAT--TTAAAACA-ATCCCTAggaaaaccagattactttgtgcacattcacccacataacatttgacacaatggttcacattttaaaacattcccttacaacatctttacaaatatggaccattttgaa
gi|13 : AATAATAGTTC------TGCCTATTGAGTGT---T--------TGACAGACAATAT-G-AAGTAC-AAAA---GTAAT----GGTTGAC--TAGCAC--TACTGAA----------ACTATG-ACATCTGA---AGTACAGAAACAAGATTTCC-TCGTG------------ACAT-----TTGGC---------A-C--AATGGTTCACAT--TTAAAATATT--CCCA------AACTGTCAC---CTTGTGCA----T-GTGGTATACTTT-GAATATAT-------------ac
gi|12 : TA---GTAAT----TGCTATT--TGGA----TATTGAGTGTTTGGCTGACAATA-C----ACA---AGTAGGAAAACCAGATTACT-TTGTGCACATTCACCC-ACATAACATTTGAC---------A-C--AATGGTTCACATT-TTAAAACATTCCCTTA-----CAAC-ATC-----TTTACAAA----T-ATGGACCATTTT-GAAtgaaatgtgaaaaaatg
gi|18 : aagaaatgcataggtgttgtttgtgcaatatctttttatcgtctgcatcaaaaaaaTGACAATTTAC---------A-G--AATGGTTCACATT-GTAAGTCAGTCCC--------TAACAGTCATGACCTTACACA----T-ACA
gi|8 : -ACGTTAC--TGC---TTCAATGAATGGCGTAAGCGCAGGTTGCAAGACTGATGAATGCCTACCATTCCG--CAATA----AGGCGACTCAGA----TCAAAACGTTAT------TTTACACGA-CTATTGAAAGATCAT-----------------G-------TAATGTA----CGACGCCAATGC-AGA---------ACC-TACGTCTAGTTAACCTACCCAATCGGTTCCAGTCTGCCATTGAAGCAG-CTCTAAACATCCCCGGTAC-----A-TGTGTATATGGCAACAG---ACA-------ACTATGGGAAACCGAT
gi|7 : aagagataaaatatacgtgaagggctattATACTGGCACGA-CCGCTGATATATCACGTATTGGGCA-------TCAACGCGTA----A----CGACGCCCAGCCAATACCGTCTTGTACCATGCGACAAGTTCACCTACGAAATCGG--------------TTAGGCCGACTTTAAACA----CATCTG-----G-TACACACG--ATAAAAGGATAAATCCTGATGCTTTGAGAGACCGATAGAACGAAATTGGCATTATA-------TTATA-CAGATAATATGTTGGAAA-GCACTTATACCAC-GTAGATGTCAA-GTATATGTAGAGATTGACT--------TG--GT--T-G----T-----GAATTTTAGTGATAGTGTTGt
gi|6 : tTACTGGCAC-GGCCGCAGAAAGATCACGTGGTGAACGTCGACGTT-------TA----A----CGACGTCTGGGCAAGCC-----CGTGCCATACGTCTAGTTCAACTACGAAATCGGTTCAAAACTGCCGCCGAGACGG-CTGTAATCA----CG-CCTGGTACA-TGC----A--ACAACAGAATACATCTAGAAACTGTGAGGAACCGATTGGGTGAAGTTGGCATCAGAGCCT---TTAGATC--AT--T-CGTTAGAACACCATAAACGCCGTGAAGA-----AG-ACG-A----GATGGTCACTGGGGACGCTG--AC--TAGACTGT-----GGATTTAAGTGATAGTGT
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): AACCACTAAATTGTTCATATTTTTAAATATTTCCTAATAACCTTTAACACAAACGGGCCAGTTTAAGTACATATAAAATACGTGAAAAACGATGCCACGGTCACGTAAAATAAACGTAATCCTG
Unaligned ( gi|17 ): ACTTTACACGTACAGACTAATTTCAGTATATTGAAATGCGGAAAAACAATGTCACAACTATCCCAAAATGAATGT
Unaligned ( gi|19 ): ATTGTGCAATATGTTCAATGGGTTCTATCAAACAAATGATACATTCTATTTTGCCTATTGGG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 1111111 1111 55555555555 11111111 111111111 444444444 111111111111111111111111111111111111111111111 2222222 2222222 11111 4444444444 111 6666666666666666666666666 1 1 888888888888888888 22222 2222 33333333333333 11111 55555555555 3333333333 22222 1 8888888888888888888888888888888888888888888888888888888
lowQualScore : 2 55 1111111 3 77777 3 4444 44 44444444444 3 3 6666 2 3 0 666 33333333 0 5555 4 7777 0 8888 444 8888 4 1 4 5 0 4 888888888 55 7777 5 333333333 6 777 9999 4 888888888888888888888888888888888888888888888 6666666 7 9999999 55555 2 0 2222222222 0 2 555 7777777777777777777777777 0 0 3 3 1 333333333333333333 3 2 00000 1 22 8 1 6666 3 8 11111111111111 66666 3 22222222222 1 1 4 1 4444444444 3 00000 1 0 2 4 2 2 1 7777777777777777777777777777777777777777777777777777777
lowQualScore : . .. ....... . ..... . .... .. ........... . . .... . . . ... ........ . .... . .... . .... ... .... . . . . . . ......... .. .... . ......... . ... .... . ............................................. ....... . ....... ..... . . .......... . . ... ......................... . . . . . .................. . . ..... . .. . . .... . . .............. ..... . ........... . . . . .......... . ..... . . . . . . . .......................................................
lowQualScore : 3 00 8888888 3 11111 1 3333 66 77777777777 3 2 5555 3 3 8 444 22222222 5 4444 0 7777 7 5555 555 6666 0 0 0 5 7 9 222222222 00 7777 7 333333333 3 888 4444 4 555555555555555555555555555555555555555555555 2222222 5 5555555 88888 5 3 2222222222 2 5 888 8888888888888888888888888 0 8 0 3 0 333333333333333333 2 8 00000 4 88 2 0 0000 8 0 88888888888888 00000 8 22222222222 4 0 2 0 5555555555 2 00000 2 0 0 0 0 0 2 8888888888888888888888888888888888888888888888888888888
consensus : TACTGAAACGAAAAAGAAACG--C-------ATAGGTGTT-TT-T---GT-GCAATATTTT-TT-AAT--GGG-TTA---TGCATCA-AACAAATAAT----AATTTCTATT-TTGCCTATTGAGTGT---T--------TGACCGACAATAT-A-AAGTAC-ATTA---GTAACGGTTGACTAGCGCTAT----TGAAACAATA-CCACG---CT-AAGTACGAAAACAANATTTCC-TCGTGCACAGTCACCCACGTGACAATTTACA---------CAA--T----GGTTCACATTTTAAAACATTCCCC-A--TAACNATCAT---CTTACACA----T-ACGGACCACTTTGAATACAT-------------NAAC--------------CGA-----CAC---GGCTACGCCAAA-T----NAACGTGAACGCG-----ACGTTA----CTGCTTCAAAGAATGGCGTAA-C-GCAGGTCGCAAGACTGCTGAATGCCAACCATTCCA--CAAT------A--GTNAACC-GTT----GC-AAAGACTACGTAATACTNGCACGACCGCGGANAGATCACGT-G-T-GGGCGT-------TAACGACGCCCAGGCAAGACCGT-----ACCATACGTCTAGTTCACCTACCGAATCGGTTCCAAACTGCCGTCGAGGCGG-CTCTAAACAC-G-CCT-G-----TGCGCAT--A--ACAACAGAATACATCCA-GATACTGTGAGAAACCGATTGCGCGAAGTTGGCATTAGAGCC-TTG---AGATCATA-TACGTTGGAA-ACCATNAACACCACGTAGA----AGACG---ATG----GATNGTCACT--------T--GAT--T-GACT----TGGATTTTAGTGATAGTGTTG
Reference ( family-107 ) : TACTGAAACGAAAAAGAAACG--C-------ATAGGTGTT-TT-T---GT-GCAATATTTT-TT-AAT--G---TTA---TGCATCA-AACAAATAAT----AATTTCTATT-TTGCCTATTGAGTGT---T--------TGACCGACAATAT-A-AAGTAC-ATTA---GTAACGGTTGACTAGCGCTAT----TGAAACAATA-CCACG---CT-AAGCACGAAAACAANATTTCC-TCGTGCACAGTCACCCACGTGACAATTTACA---------CAA--T----GGTTCACATTTTAAAACATTTCCCCA--TAACAATCAT---CTTACACA----T-ACGGACCACTTTGAATACAT-------------NAAC--------------CAG-----CAC---GGCTACGCCAAA-T----NAACGTGANCGCG-----ACGTTA----CTGCTTCAAAGAATGGCGTAA-C-GCAGGTTGCAAGACTGCTGAATGCCAACCATTCCG--CAAT------A--GTNAATC-GTT----GC-AAANACTACGTAATACTTGCACGACCGCTGANAGATCACGT-G-T-GGGCGN-------TAACGACGCCCGGGCAAGACCGT-----ACCATACGTCTAGTTCACCTACNAAATCGGTTCCAAACTGCCGCCGAGGCNG-CTCTAAACAC-G-CNC-G-----TGCGCAT--A--ACAACAGAATACATCC--GA-ACTGTGAGAAACCGATTGNACGAAATTGGCATCANAGCC-TT----AGATCATA-TACGTTGGAA-ACCGTAAACGCCGCGTAGA----A-ACG---ATG----GATGGTCACT--------T--GAT--T-GAC-----TGGATTTTAGTGATAGTGTTG
gi|1 : TACTGAAACAAGAAAGAAATG--C-------AGAGGTATT-TT-A---GT-GCAATATTTT-TT-AAT--A---TTA---TGCATCA-AATAAATAAT----AATTTCTATT-TTGTCTATTGAGTGT---T--------TGACCAATAATAT-A-AAGTAC-ATTA---GTAACAGTTGACTGGAGCTAT----TGAAACAATA-CCATG---AT-AAGTTTGAAAACAAGATTTTC-TAGTGCACAGTCATACACATAACAATTTACA---------CAA--T----GGTGCACATGTTAAAACATTTCCCTAGTTAACAATCAT---TTTACACA----T-ACAGACCACTTAGAATACAT-------------AAAC--------------CA------CGCCTTGGCTATGACAAAGT----TAACTTGAGCGCG-----ACGTTA----CT-CTTCAAAGAATTGTGCCATT-GCAGGTCGCAAGACAGTTGAATGCCAACCATTCCA--CAATACAGTAA--GTAAACC-ACT----GCAAAAGACTATGCAATACTGGCAC-ACCATGGACAGATCAC------------T-------TAACAACACCCAGGCAAGACTGT-----ACCATGCGTCTAGATTACCTATTGAATCGGTAACAAACTACGGTTCAGGCAG-CTCTAAGCACGG-CCT-A-----TGCGCAG--A--ACAACAGAATACATCCA-GATACTGTGGGAAACCAATAGCGCAAGGTTGACATTAAAGCC-CTG---AGATCATAGTACTTTGGTA-TCCATTAACACCACACAAA----A-ACA---ATG----GATAGTCACT--------T--GAT--T-GAC-----TGGATTTTAGTGATAGTGTTG
gi|10 : ACTTAAATAAAAACTAAACA--T-------ACAGAGGTT-TT-T---GT-GCAATATT------AAG--G---TTA-----CATCA-AACATGCAAT----AAATATTATCATTGT---TTGAATAT---T----------------AATAT-A-AAGTATGATT----GTAATATTTCAGTAGCATTTT----TGAAACTGTA-GAACA---CT-TAGCACGAAAATAATATTTCC-TTGTACACAGTTA-CTACATGGCTATTTACA---------CAG--T----GGTTCATG-TTTAAAACATTCCC-----TAACTATCA
gi|11 : T-TT-T---GTTACAGTATTTG-TTGAAT--GGG-TT------CACCA-AACAAATAAT----AATTTCTATT-TTGCCTATTGGGTGT---TATAAACTTTGGCCGACAGTAT-T-AACTGC-ACTA---GTAACGGTTGATTGGCGCTAT----TGATACACTA-CAACG---CT-TAGCAAAAAAACAAAATTTCC-TCGTGCTCAGTAACCCCGGTGACTATTTACA---------CAA--C----GGTTCACA-TTTAAAACAATCCC-----TAACct
gi|12 : AAGAAATG--C-------ATAGGTGTTGTT-T---GT-GCAATATCTT-TT-TAT--C---GTC---TGCATCA-AAAAAATAGT----AATTGCTA-T-TTGGATATTGAGTGT---T--------TGGCTGACAATAC-ACAAGTA
gi|12 : ACAATA-C-AC-------AAGTAGGAAAACCAGATTACT-TTGTGCACATTCACCCACATAACATTTGACA---------CAA--T----GGTTCACATTTTAAAACATTCCCTTA--CAAC-ATC-----TTTACAAA----T-ATGGACCATTTTGAAggaaaaccagattactttgtgcacattcacccacataacatttgacacaatggttcacattttaaaacattcccttacaacatctttacaaatatggaccattttgaa
gi|13 : aagaaatgcataggtgttgtttgtgcaatatctttttatcgtctgcatcaaaaaaatagtaattgctatttggatattgagtgtttggctgAATAAT----AGTTC-------TGCCTATTGAGTGT---T--------TGACAGACAATAT-G-AAGTAC-AAAA---GTAATGGTTGACTAGCACTAC----TGAAACTATG-ACAT----CTGAAGTACAGAAACAAGATTTCC-T----------------CGTGACATTTGGCA---------CAA--T----GGTTCACA-TTTAAAATATT--CCCA---AACTGTCAC---CTTGTGCA----T-GTGGTATACTTTGAATATAT-------------TGA
gi|14 : TACTTAAACTAAAAAGAAACGGGT-------ATATGTGTT-TT-----GT-TCAATAAATT-TT-ACT--G---GAA----GCTTTA-ACCAATCAGT----A-TTTGTGTT-TTATCTGTTCAGTGTAGTT--------TGACTGGCCATAT-A-CAGTAC-ATTA---GTAACGGTTTACTAGCTTTAT----TGAAACAATA-TCAaatgtgaaaaaatg
gi|16 : TACTGAAACGAACAAGAAGGA--C-------AAATGTAGT-TT-T---GT-GCAATA-TTT-GT-AATGGG---TTA-----AATCA-ACCAAATAAT----AAT
gi|18 : TGACAATTTACA---------GAA--T----GGTTCACATTGTAAGTCAGTCCC-----TAACAGTCATGACCTTACACA----T-ACa
gi|19 : T-T---GT-GCAATATGTT-C--AAT--GGG-TTC---T--ATCA-AACAAATGAT----ACATTCTATT-TTGCCTATTGGGa
gi|2 : aTACCGAAACGAAAAAGGAACG--C-------ATGGGTATA-TT-T---GT-GCAATATTCCGTT-ATT--GCATTTGGGTTGCTTCA-ATCACATGATTATTAATTTTTATA-TTGTCTATTGACTGT---T--------TGACCGA--ACAT-A---GTAT-ATTC---GTAACGATTGACTTGTACTAT----TCAAACAATA-TCATG---TT-AAGTACGAAAACAATATTTCC-TTTCGCACAATCCCCTACGTGGCATTTTACA---------CAA--T----GGTTCACATTTTG---TATTTCCC-A---AACAATCTT---ATAACACA----TTACTGACCATTACGAA-ACGT-------------GTAC--------------CA--------C---GGCTGCGCCAAA-T----GAACGAGA-CGTT-----ACATTG----CTGCTTCAAAG-------TA-----CAGGCTGCATGACTGCTAAATGCCAAC--TTCTATTCAAT------AC-GTCGACT-TTG----GC-AAATACTGCGTAATAATTGCACGACCGCTGATAGATTACGTAG-T-GGGCG-------------ACTTTCAAGTTAGACCGT-----ATTATATCTCTGGTGTACCTTCTGAATCGGTTTCAAACTGCC---------G-TTCTAAACAC-G-CGTGG-----TACACAT--A--AAAACAGAAT-----------ATTGGAAGAAACCGATTGCACGTAATTGACATAAGACCA-TT----TAAGC-TA-TATGTTGGGA-ACCGTAAACACCATGTAGA----AGACA---ATG------T-GTCACA--------TGGGATAAT-GACTTTAATGGATTTTAGTGATATTGT
gi|20 : taTACTGAAACGAAGAAGAAACG--C-------ACAGGTATT-TT-T---GT-GCAAT
gi|3 : ataACTGAAAC-AACTTGAAACG--CTCATAAAGTAGGAACT-TT-TTAAGT-GAAATTTTTG-TT-AAT--G---TGT---TGCATCA-AACAAATAAT----AATTTTTATT-ACATCTGTTGAGTGT---T--------T-ACCGACAATAT-A-GAGTAC-ATCA---GTAACGGTTGCCTAGCGCTAT----T------ATA-CCACG---TT-AAGTATGAAAACAAGATTCCC-TTGTGCACATTCATCTACGTGATATTTTACA---------CAG--T----TATTTACATTTGAAAACATT---CCA--TAACAATCGT---TTTATACA----T--CAGACCACTTTGAATACCT-------------TAA----------------GA-----CAT---G--------AAA-TACAACAGCATGAACGCGA----ACGTTA----CTTCTTCAAAGAATG---------GCAGGTTACGAGACTGCTGAATGCCAACCACTCCA--CAAT------A-----AATC-GTTCTTGGC-CAAGACTACATAATACTTGCACGACCGCGGATTTATCATGCAG-T-GGGTGT-------CCACGA
gi|4 : TACTGAAACGAAAAAGAAGCG--C-------ATAGGCATT-TT-T---GG-ACAATATTTT----AAT--GGG-TTA------ATTAGAATACATAAT----AATTTCTATT-TTGCCTACTAGGTGC---T--------TGAACAACAATGTCA-AAGAAC-ATTAATAGTAACGGTTGACTAGCGCTTT----AGAAACAATA-TCACG---CC-ACGCACGAAAACAATATGTAT-TCGTGCACAGTTACCCACGTGACAATTTACAAAAAAATTACAAAAT----TGTTCACATTTTAAAGTATT----CAG-TAACTAACAT---CTTACACA----T-ATGGAGCACTATGGATATATTAAAATGTGAAAAAAAT--------------CAGGATACCAC---GGCTACGCCAAACT----TAACGTGGTCGTG-----CCGTGACGAGCTGATTTAAGGAATGATGTAA-TGGCAGGTCATAAGttaga
gi|5 : aACTGAAACAAACAAAAAACG--T-------ACAGGTG--------------CAATAGTTT-T--AAT--GGG-TTA-----CATCA-A-CAAATAAT----AATTTCTATT-T-GCCTACTGAGTGT---T--------TGACCAAC-----------------TA---GTAACG--TGACTATAGCTAT----TGAAA-AATGTCCACG---CT-AAGCACGAAAATCACATTTTCATCGTGCA--GTTACCCACATGATAATTTACA---------CAC--C----AGCTCATATGTTAAAACACTTTCC-----AACTATCAC---CTTACACATTGGT-ACGGATAACTTTGAATGTATTG-----------AAATGTGGAAAAAAAAGACGA-----CAC---GGTTACTCCAAACT----GAAGGTGAAC--------ACTTT------TGCTTCAGGTAATTGCACAA-
gi|6 : aTACTGGCACGGCCGCAGAAAGATCACGT-GGT-GAACGTCGACGTTTAACGACGTCTGGGCAAGCCCGT-----GCCATACGTCTAGTTCAACTACGAAATCGGTTCAAAACTGCCGCCGAGACGG-CTGTAATCAC-G-CCT-G------GTACATGCA--ACAACAGAATACATCTAGAA-ACTGTGAGGAACCGATTGGGTGAAGTTGGCATCAGAGCCTTT----AGATCAT--T-CGTTAGAACACCATAAACGCCGTGAAGA----AGACG---A------GATGGTCACTGGGGACGCT--GAC--TAGACTG---TGGATTTAAGTGATAGTGTacacat
gi|7 : cATACTGGCACGACCGCTGATATATCACGT-A-TTGGGCATCAACGCGTAACGACGCCCAGCCAATACCGTCTTGTACCATGCGACAAGTTCACCTACGAAATCGGTT--------------AGGCCGACTTTAAACAC-ATCTG-G-----TACACAC--G--ATAAAAGGATAAATCCT-GATGCTTTGAGAGACCGATAGAACGAAATTGGCATTATA----TTATACAGATAATA-T--GTTGGAA-AGCACTTATACCACGTAGATGTCA-A-GTATATGTAGAGATTG--ACT--------T--GGT--T-G-------TGAATTTTAGTGATAGTGTTG
gi|8 : tAAA-T----ATACGTGAAGG-GCTATTACGTTA----CTGCTTCAATGAATGGCGTAAGC-GCAGGTTGCAAGACTGATGAATGCCTACCATTCCG--CAAT------AAGGCGACTCAGAT-----C-AAA----ACGTTAT-TTTACACGACTATTGAAAGATCATGT-AAT-G------------TA-CGACGCCAATGCAGAACC-----------TACGTCTAGTTAACCTACCCAATCGGTTCCAGTCTGCCATTGAAGCAG-CTCTAAACAT-C-CCC-GGTACATGTGTAT--ATGGCAACAG---AC-------A-ACTATGGGAAACCGATT
gi|9 : aagagataGAAACGGAAAAGAAACG--C-------ATATATGTG-TTGT---GT-GCGGTATTTT-T--AAT--GAGTTT------CATCA-----AACAAA----AAT--------------AATAAA-----------------ATCAAAATTAT-A-AAATAT-GTTC---GTAACGATTAATTAACCTTGTAGTATAAAACAATA-TTATGTTACT-GAGTACGAACACAATATTTTC-TTGTGTACAGTCACCTACGTGACA-TTTACAA--------CAA--TAAATGATTCACAC------ATAGTGTC-----TAACAGTCAT---TTTACACA----T-ACGCTCCATTTTGAATACA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AACCACTAAATTGTTCATATTTTTAAATATTTCCTAATAACCTTTAACACAAACGGGCCAGTTTAAGTACATATAAAATACGTGAAAAACGATGCCACGGTCACGTAAAATAAACGTAATCCTG
Unaligned ( gi|17 ): ACTTTACACGTACAGACTAATTTCAGTATATTGAAATGCGGAAAAACAATGTCACAACTATCCCAAAATGAATGT
Alignments
lowQualScore : 111111111111111111111111111111111111111
lowQualScore : 1111111 111111111 333 11111111 111111111 33333 222222222222222222222222222222222222222 111 2222222 2222222 11111 4444444444 11 6666666666666666666666666 1 77777777777777777777 22222 111111 222222222222 11 22222222 22222222222 22222 1 6666666666666666666666666666666666666666666666666
lowQualScore : 2 55 1111111 3 77777 3 444444444 44 0 555 3 3 6666 2 3 0 11 666 33333333 0 5555 4 7777 0 8888 444 8888 4 1 4 5 0 00 3 444444444 7777 44 4 3 1 3 4 22222 1 99999 8888 4 222222222222222222222222222222222222222 000 1 1111111 6 9999999 55555 2 0 2222222222 0 2 33 7777777777777777777777777 0 8 1 5 1 55555555555555555555 00000 1 77 8 1 666666 1 8 777777777777 2 11 3 11111111 1 2 1 0 88888888888 3 3 00000 1 0 1 1 2 9999999999999999999999999999999999999999999999999
lowQualScore : . .. ....... . ..... . ......... .. . ... . . .... . . . .. ... ........ . .... . .... . .... ... .... . . . . . .. . ......... .... .. . . . . . ..... . ..... .... . ....................................... ... . ....... . ....... ..... . . .......... . . .. ......................... . . . . . .................... ..... . .. . . ...... . . ............ . .. . ........ . . . . ........... . . ..... . . . . . .................................................
lowQualScore : 3 00 8888888 3 11111 1 555555555 66 4 666 3 2 5555 3 3 3 22 444 22222222 5 4444 0 7777 7 5555 555 6666 0 0 0 5 7 66 6 555555555 1111 66 5 3 2 3 4 55555 0 99999 5555 0 777777777777777777777777777777777777777 000 0 3333333 0 5555555 88888 5 3 2222222222 2 5 88 2222222222222222222222222 0 8 0 2 0 77777777777777777777 00000 4 88 2 0 666666 4 0 000000000000 8 00 8 88888888 4 5 2 2 88888888888 2 2 00000 2 0 0 2 5 5555555555555555555555555555555555555555555555555
consensus : TACTGAAACGAAAAAGAAACG--C-------ATAGGTGTT-TT-T---GT-GCAATATTTT-TT-A----AT--GGGTTA-GCATCA-AACAAATAAT----AATTTCTATT-TTGCCTATTGAGTGT---T--------TGACCGACAATAT-A-AAGTAC-ATTA---GTAACGGTTGACTAGCGCTAT----TGAAACAATA-CCACG---CT-AAGTACGAAAACAANATTTCC-TCGTGCACAGTCACCCACGTGACAATTTAC-A---------C----AA--TGGTTCACATTTT-AAAACA-TTCCCC---TAACAATCAT---C-TTACACA----T-ACGGACCACTTTGAATACAT-------------AAAC--------------C--GA---CAC---GGCTACGCCAAA-T----NAACGTGAACGCG-----ACGTTA----CTGCTTCAAAGAATGGCGTAA-C-GCAGGTCGCAAGACTGCTGAATGCCAACCATTCCA--CAATA-----A-GTCGACC--GTT----GC-AAAGACTACGTAATACTNGCACGACCGCGGANAGATCACGT-G-T-GGGCGT-------TAACGACGCCCAGGCAAGACCGT-----ACCATACGTCTAGTTCACCTACCGAATCGGTTCCAAACTGCCGTCGAGG-CGGCTCTAAACAC-GCC-------T-G-TGCACAT--AACAACAGAATACATCCAGATACTGTGAGAAACCGATTGCGCGAAGTTGGCATTAGAGCC--TTA---AGATCATA-TACGTTGGAA-ACCATNAACACCACGTAGAAGACA-----ATG----GATNGTCACT--------T--GAT--T-GACT----TGGATTTTAGTGATAGTGTTG
Reference ( family-107 ) : TACTGAAACGAAAAAGAAACG--C-------ATAGGTGTT-TT-T---GT-GCAATATTTT-TT-A----AT--GGGTTATGCATCA-AACAAATAAT----AATTTCTATT-TTGCCTATTGAGTGT---T--------TGACCGACAATAT-A-AAGTAC-ATTA---GTAACGGTTGACTAGCGCTAT----TGAAACAATA-CCACG---CT-AAGTACGAAAACAANATTTCC-TCGTGCACAGTCACCCACGTGACAATTTAC-A---------C----AA--TGGTTCACATTTT-AAAACA-TTCCCCA--TAACNATCAT---C-TTACACA----T-ACGGACCACTTTGAATACAT-------------NAAC--------------C--GA---CAC---GGCTACGCCAAA-T----NAACGTGAACGCG-----ACGTTA----CTGCTTCAAAGAATGGCGTAA-C-GCAGGTCGCAAGACTGCTGAATGCCAACCATTCCA--CAAT------A-GTNAACC--GTT----GC-AAAGACTACGTAATACTNGCACGACCGCGGANAGATCACGT-G-T-GGGCGT-------TAACGACGCCCAGGCAAGACCGT-----ACCATACGTCTAGTTCACCTACCGAATCGGTTCCAAACTGCCGTCGAGG-CGGCTCTAAACAC-GCC-------T-G-TGCGCAT--AACAACAGAATACATCCAGATACTGTGAGAAACCGATTGCGCGAAGTTGGCATTAGAGCC--TTG---AGATCATA-TACGTTGGAA-ACCATNAACACCACGTAGAAGACG-----ATG----GATNGTCACT--------T--GAT--T-GACT----TGGATTTTAGTGATAGTGTTG
gi|1 : TACTGAAACAAGAAAGAAATG--C-------AGAGGTATT-TT-A---GT-GCAATATTTT-TT-A----AT--A--TTATGCATCA-AATAAATAAT----AATTTCTATT-TTGTCTATTGAGTGT---T--------TGACCAATAATAT-A-AAGTAC-ATTA---GTAACAGTTGACTGGAGCTAT----TGAAACAATA-CCATG---AT-AAGTTTGAAAACAAGATTTTC-TAGTGCACAGTCATACACATAACAATTTAC-A---------C----AA--TGGTGCACATGTT-AAAACATTTCCCTAGTTAACAATCAT---T-TTACACA----T-ACAGACCACTTAGAATACAT-------------AAAC--------------C---A---CGCCTTGGCTATGACAAAGT----TAACTTGAGCGCG-----ACGTTA----CT-CTTCAAAGAATTGTGCCATT-GCAGGTCGCAAGACAGTTGAATGCCAACCATTCCA--CAATACAGTAA-GTAAACC--ACT----GCAAAAGACTATGCAATACTGGCAC-ACCATGGACAGATCAC------------T-------TAACAACACCCAGGCAAGACTGT-----ACCATGCGTCTAGATTACCTATTGAATCGGTAACAAACTACGGTTCAGG-CAGCTCTAAGCACGGCC-------T-A-TGCGCAG--AACAACAGAATACATCCAGATACTGTGGGAAACCAATAGCGCAAGGTTGACATTAAAGCC--CTG---AGATCATAGTACTTTGGTA-TCCATTAACACCACACA-AAAACA-----ATG----GATAGTCACT--------T--GAT--T-GAC-----TGGATTTTAGTGATAGTGTTG
gi|10 : ACTTAAATAAAAACTAAACA--T-------ACAGAGGTT-TT-T---GT-GCAATATT------A----A----GGTTA--CATCA-AACATGCAAT----AAATATTATCATTGT---TTGAATAT---T----------------AATAT-A-AAGTATGATT----GTAATATTTCAGTAGCATTTT----TGAAACTGTA-GAACA---CT-TAGCACGAAAATAATATTTCC-TTGTACACAGTTA-CTACATGGCTATTTAC-A---------C----AG--TGGTTCATG-TTT-AAAACA-TTCCC----TAACTATCA
gi|11 : T-TT-T---GTTACAGTATTTG-TTGA----AT--GGGTT---CACCA-AACAAATAAT----AATTTCTATT-TTGCCTATTGGGTGT---TATAAACTTTGGCCGACAGTAT-T-AACTGC-ACTA---GTAACGGTTGATTGGCGCTAT----TGATACACTA-CAACG---CT-TAGCAAAAAAACAAAATTTCC-TCGTGCTCAGTAACCCCGGTGACTATTTAC-A---------C----AA--CGGTTCACA-TTT-AAAACA-ATCCC----TAACct
gi|12 : AAGAAATG--C-------ATAGGTGTTGTT-T---GT-GCAATATCTT-TT-T----AT--CG--TCTGCATCA-AAAAAATAGT----AATTGCTATT-TGGA-TATTGAGTGT---T--------TGGCTGACAATAC-ACAAGTA
gi|12 : ACAATA-C-AC-------AAGTAGGAAAACCAGATTACT-TTGTGCACATTCACCCACATAACATTTGAC-A---------C----AA--TGGTTCACATTTT-AAAACA-TTCCC----TTACAA-CAT---CTTTACAAA----T-ATGGACCATTTTGAAggaaaaccagattactttgtgcacattcacccacataacatttgacacaatggttcacattttaaaacattcccttacaacatctttacaaatatggaccattttgaa
gi|13 : aagaaatgcataggtgttgtttgtgcaatatctttttatcgtctgcatcaaaaaaatagtaattgctatttggatattgagtgtttggctgAATAAT----AGTTC-------TGCCTATTGAGTGT---T--------TGACAGACAATAT-G-AAGTAC-AAAA---GTAATGGTTGACTAGCACTAC----TGAAACTATG-ACAT----CTGAAGTACAGAAACAAGATTTCC-T----------------CGTGACATTTGGC-A---------C----AA--TGGTTCACA-TTT-AAAATA-TT-CCCA---AACTGTCAC---C-TTGTGCA----T-GTGGTATACTTTGAATATAT-------------TGA
gi|14 : TACTTAAACTAAAAAGAAACGGGT-------ATATGTGTT-TT-----GT-TCAATAAATT-TT-A----CT--GG---AAGCTTTA-ACCAATCAGT----A-TTTGTGTT-TTATCTGTTCAGTGTAGTT--------TGACTGGCCATAT-A-CAGTAC-ATTA---GTAACGGTTTACTAGCTTTAT----TGAAACAATA-TCAaatgtgaaaaaatg
gi|15 : ----AA--TTGTTCATATTTTTA-AATA-TTTCC----TAATAACC-T---T-TAACACA----A-ACGGGCCAGTTTAAGTACATATAAAATACGTGAAAAA--------------C--GATGCCAC---GGTCACGTAAAA-T----AAACGTAA
gi|16 : aaccactaTACTGAAACGAACAAGAAGGA--C-------AAATGTAGT-TT-T---GT-GCAATA-TTT-GT-A----AT--GGGTTA--AATCA-ACCAAATAAT----AATtcctg
gi|18 : TGACAATTTAC-A---------G----AA--TGGTTCACATTGT-AAGTCA-GTCCC----TAACAGTCATGACC-TTACACA----T-ACa
gi|19 : T-T---GT-GCAATATGTT-C--A----AT--GGGTTCT--ATCA-AACAAATGAT----ACATTCTATT-TTGCCTATTGGGa
gi|2 : aTACCGAAACGAAAAAGGAACG--C-------ATGGGTATA-TT-T---GT-GCAATATTCCGTT-ATTGCATTTGGGTT--GCTTCA-ATCACATGATTATTAATTTTTATA-TTGTCTATTGACTGT---T--------TGACCGA--ACAT-A---GTAT-ATTC---GTAACGATTGACTTGTACTAT----TCAAACAATA-TCATG---TT-AAGTACGAAAACAATATTTCC-TTTCGCACAATCCCCTACGTGGCATTTTAC-A---------C----AA--TGGTTCACATTTT-G---TA-TTTCCCA---AACAATCTT---A-TAACACA----TTACTGACCATTACGAA-ACGT-------------GTAC--------------C--------AC---GGCTGCGCCAAA-T----GAACGAGA-CGTT-----ACATTG----CTGCTTCAAAG-------TA-----CAGGCTGCATGACTGCTAAATGCCAAC--TTCTATTCAAT------ACGTCGACT--TTG----GC-AAATACTGCGTAATAATTGCACGACCGCTGATAGATTACGTAG-T-GGGCG-------------ACTTTCAAGTTAGACCGT-----ATTATATCTCTGGTGTACCTTCTGAATCGGTTTCAAACTGCCGT----------TCTAAACAC-GCG-------T-GGTACACAT--AAAAACAGAATAT----------TGGAAGAAACCGATTGCACGTAATTGACATAAGA-CCATTTA---AG--C-TA-TATGTTGGGA-ACCGTAAACACCATGTAGAAGACA-----ATG-------TGTCACA--------TGGGATAAT-GACTTTAATGGATTTTAGTGATATTGT
gi|20 : taTACTGAAACGAAGAAGAAACG--C-------ACAGGTATT-TT-T---GT-GCAAT
gi|3 : ataACTGAAAC-AACTTGAAACG--CTCATAAAGTAGGAACT-TT-TTAAGT-GAAATTTTTG-TT-A----AT--GTGTT--GCATCA-AACAAATAAT----AATTTTTATT-ACATCTGTTGAGTGT---T--------T-ACCGACAATAT-A-GAGTAC-ATCA---GTAACGGTTGCCTAGCGCTAT----T------ATA-CCACG---TT-AAGTATGAAAACAAGATTCCC-TTGTGCACATTCATCTACGTGATATTTTAC-A---------C----AG--TTATTTACATTTG-AAAACA-TT--CCA--TAACAATCGT---T-TTATACA----T--CAGACCACTTTGAATACCT-------------TAA------------------GA---CAT---G--------AAA-TACAACAGCATGAACGCGA----ACGTTA----CTTCTTCAAAGAATG---------GCAGGTTACGAGACTGCTGAATGCCAACCACTCCA--CAAT------A----AATC--GTTCTTGGC-CAAGACTACATAATACTTGCACGACCGCGGATTTATCATGCAG-T-GGGTGT-------CCACGA
gi|4 : TACTGAAACGAAAAAGAAGCG--C-------ATAGGCATT-TT-T---GG-ACAATATTTT----A----AT--GGGTTA---ATTAGAATACATAAT----AATTTCTATT-TTGCCTACTAGGTGC---T--------TGAACAACAATGTCA-AAGAAC-ATTAATAGTAACGGTTGACTAGCGCTTT----AGAAACAATA-TCACG---CC-ACGCACGAAAACAATATGTAT-TCGTGCACAGTTACCCACGTGACAATTTAC-AAAAAAATTAC----AAAATTGTTCACATTTT-AAAGTA-TTCA--G--TAACTAACAT---C-TTACACA----T-ATGGAGCACTATGGATATATTAAAATGTGAAAAAAAT--------------CAGGATACCAC---GGCTACGCCAAACT----TAACGTGGTCGTG-----CCGTGACGAGCTGATTTAAGGAATGATGTAA-TGGCAGGTCATAAGttaga
gi|5 : aACTGAAACAAACAAAAAACG--T-------ACAGGTG--------------CAATAGTTT-T--A----AT--GGGTTA--CATCA-A-CAAATAAT----AATTTCTATT-T-GCCTACTGAGTGT---T--------TGACCAAC-----------------TA---GTAACG--TGACTATAGCTAT----TGAAA-AATGTCCACG---CT-AAGCACGAAAATCACATTTTCATCGTGCA--GTTACCCACATGATAATTTAC-A---------C----AC--CAGCTCATATGTT-AAAACA-CTTTCC----AACTATCAC---C-TTACACATTGGT-ACGGATAACTTTGAATGTATTG-----------AAATGTGGAAAAAAAAGAC--GA---CAC---GGTTACTCCAAACT----GAAGGTGAAC--------ACTTT------TGCTTCAGGTAATTGCACAA-
gi|6 : aTACTGGCACGGCCGCAGAAAGATCACGT-GGT-GAACGTCGACGTTTAACGACGTCTGGGCAAGCCCGT-----GCCATACGTCTAGTTCAACTACGAAATCGGTTCAAAACTGCCGCCGAGA-CGGCTGTAATCAC-GCC-------T-G--GTACATGCAACAACAGAATACATCTAGAAACTGTGAGGAACCGATTGGGTGAAGTTGGCATCAGAGCC--TTT---AGATCAT--T-CGTTAGAACACCATAAACGCCGTGAAGAAGACG-----A------GATGGTCACTGGGGACGCT--GAC--TAGACTG---TGGATTTAAGTGATAGTGTacacat
gi|7 : cATACTGGCACGACCGCTGATATATCACGT-A-TTGGGCATCAACGCGTAACGACGCCCAGCCAATACCGTCTTGTACCATGCGACAAGTTCACCTACGAAATCGGTT--------------AGGCCGACTTTAAACAC-ATC-------TGG-TACACAC--GATAAAAGGATAAATCCTGATGCTTTGAGAGACCGATAGAACGAAATTGGCATTATA-----TTATACAGATAATA-T--GTTGGAA-AGCACTTATACCACGTAGATGTCAAGTATATGTAGAGATTG--ACT--------T--GGT--T-G-------TGAATTTTAGTGATAGTGTTG
gi|8 : tAAA-T----ATACGTGAAGG-GCTATTACGTTA----CTGCTTCAATGAATGGCGTAAGC-GCAGGTTGCAAGACTGATGAATGCCTACCATTCCG--CAATA-----A-GGCGACTCAGAT-----C-AAA----ACGTTAT-TTTACACGACTATTGAAAGATCATGT------AATGT---------ACGACGCCAATGCAGAACC-----------TACGTCTAGTTAACCTACCCAATCGGTTCCAGTCTGCCATTGAAG-CAGCTCTAAACAT-CCCCGGTACAT-G-TGTATAT--GGCAACAG---ACA-------ACTATGGGAAACCGATT
gi|9 : aagagataGAAACGGAAAAGAAACG--C-------ATATATGTG-TTGT---GT-GCGGTATTTT-T--A----AT--GAGTT-T-CATCA-----AACAAA----AAT--------------AATAAA-----------------ATCAAAATTAT-A-AAATAT-GTTC---GTAACGATTAATTAACCTTGTAGTATAAAACAATA-TTATGTTACT-GAGTACGAACACAATATTTTC-TTGTGTACAGTCACCTACGTGAC-ATTTACAA---------CAATAAA--TGATTCACAC-------ATA-GTGTC----TAACAGTCAT---T-TTACACA----T-ACGCTCCATTTTGAATACA---------------A----------------T--GA---CAC---G
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ACTTTACACGTACAGACTAATTTCAGTATATTGAAATGCGGAAAAACAATGTCACAACTATCCCAAAATGAATGT
Alignments
lowQualScore : 111111111111111111111111111111111111111
lowQualScore : 1111111 111111111 222 11111111 111111111 111111111 11111 000000000000000000000000000000000000000 111 2222222 222222222 11111 3333333 11 22222 222222 1 77777777777777777777 22222 11 22222222222 11 22222222 22222222222 22222 1 666666666666666666666666666666666666666666666666
lowQualScore : 2 55 1111111 3 77777 3 444444444 44 888 3 3 3 6666 2 3 0 11 666 33333333 0 5555 4 7777 0 8888 444 8888 4 1 4 5 0 00 3 444444444 7777 55 8 555555555 1 00000 9999 4 222222222222222222222222222222222222222 111 6666666 6 444444444 55555 2 0 2 5555555 0 2 33 55555 777777 0 8 1 5 1 55555555555555555555 00000 1 77 8 1 66 99 8 77777777777 11 3 11111111 1 2 1 0 55555555555 3 3 00000 1 0 1 1 2 777777777777777777777777777777777777777777777777
lowQualScore : . .. ....... . ..... . ......... .. ... . . . .... . . . .. ... ........ . .... . .... . .... ... .... . . . . . .. . ......... .... .. . ......... . ..... .... . ....................................... ... ....... . ......... ..... . . . ....... . . .. ..... ...... . . . . . .................... ..... . .. . . .. .. . ........... .. . ........ . . . . ........... . . ..... . . . . . ................................................
lowQualScore : 3 00 8888888 3 11111 1 555555555 66 999 3 3 2 5555 3 3 3 22 444 22222222 5 4444 0 7777 7 5555 555 6666 0 0 0 5 7 66 6 555555555 7777 00 8 999999999 4 33333 4444 4 000000000000000000000000000000000000000 777 2222222 0 555555555 88888 5 3 5 1111111 2 5 88 00000 000000 0 8 0 2 0 77777777777777777777 00000 4 88 2 0 44 44 0 00000000000 00 8 88888888 4 5 2 2 88888888888 2 2 00000 2 0 0 2 5 555555555555555555555555555555555555555555555555
consensus : TACTGAAACGAAAAAGAAACG--C-------ATAGGTGTT-TT-T---GT-GCAATATTTT-TT-A----AT--GGGTTA-GC-ATCA-AACAAATAAT----AATTTCTATT-TTGCCTATTGAGTGT---T--------TGACCGACAATAT-A-AAGTAC-ATTA---GTAACGGTTGACTAGCGCTAT----TGAAACAATA-CCACG---CT-AAGTACGAAAACAANATTTCC-TCGTGCACAGTCACCCACGTGACAATTTAC-A---------C----AA--TGGTTCACATTTTAAAACATTCCCC----TAACAATCAT---C-TTACACA----T-ACGGACCACTTTGAATACAT-------------AAAC--------------C--GA---CAC---GGCTACGCCAAA-TN----AACGTGAACGCG-----A-CGTTA----CTGCTTCAAAGAATGGCGTAA-C-GCAGGTCGCAAGACTGCTGAATGCCAACCATTCCA--CAA-----TAAGTCGACC--GCGGC-AAAGACTACGTAATACTNGCACGACCGCGGANAGATCACGT-G-T-GGGCGT-------TAACGACGCCCAGGCAAGACCGT-----ACCATACGTCTAGTTCACCTACCGAATCGGTTCCAAACTGCCGTCGAGGC-GGCTCTAAACAC-GCC-------TGGTGCACAT--AACAACAGAATACATCCAGATACTGTGAGAAACCGATTGCGCGAAGTTGGCATTAGAGCC--TTA---AGATCATA-TACGTTGGAA-ACCATNAACACCACGTAGAAGACA-----ATG----GATNGTCACT--------T--GAT--T-GACT----TGGATTTTAGTGATAGTGTTG
Reference ( family-107 ) : TACTGAAACGAAAAAGAAACG--C-------ATAGGTGTT-TT-T---GT-GCAATATTTT-TT-A----AT--GGGTTA-GC-ATCA-AACAAATAAT----AATTTCTATT-TTGCCTATTGAGTGT---T--------TGACCGACAATAT-A-AAGTAC-ATTA---GTAACGGTTGACTAGCGCTAT----TGAAACAATA-CCACG---CT-AAGTACGAAAACAANATTTCC-TCGTGCACAGTCACCCACGTGACAATTTAC-A---------C----AA--TGGTTCACATTTTAAAACATTCCCC----TAACAATCAT---C-TTACACA----T-ACGGACCACTTTGAATACAT-------------AAAC--------------C--GA---CAC---GGCTACGCCAAA-TN----AACGTGAACGCG-----A-CGTTA----CTGCTTCAAAGAATGGCGTAA-C-GCAGGTCGCAAGACTGCTGAATGCCAACCATTCCA--CAA-----TAAGTCGACC--GTTGC-AAAGACTACGTAATACTNGCACGACCGCGGANAGATCACGT-G-T-GGGCGT-------TAACGACGCCCAGGCAAGACCGT-----ACCATACGTCTAGTTCACCTACCGAATCGGTTCCAAACTGCCGTCGAGGC-GGCTCTAAACAC-GCC-------TG-TGCACAT--AACAACAGAATACATCCAGATACTGTGAGAAACCGATTGCGCGAAGTTGGCATTAGAGCC--TTA---AGATCATA-TACGTTGGAA-ACCATNAACACCACGTAGAAGACA-----ATG----GATNGTCACT--------T--GAT--T-GACT----TGGATTTTAGTGATAGTGTTG
gi|1 : TACTGAAACAAGAAAGAAATG--C-------AGAGGTATT-TT-A---GT-GCAATATTTT-TT-A----AT--A--TTATGC-ATCA-AATAAATAAT----AATTTCTATT-TTGTCTATTGAGTGT---T--------TGACCAATAATAT-A-AAGTAC-ATTA---GTAACAGTTGACTGGAGCTAT----TGAAACAATA-CCATG---AT-AAGTTTGAAAACAAGATTTTC-TAGTGCACAGTCATACACATAACAATTTAC-A---------C----AA--TGGTGCACATGTTAAAACATTTCCCTAGTTAACAATCAT---T-TTACACA----T-ACAGACCACTTAGAATACAT-------------AAAC--------------C---A---CGCCTTGGCTATGACAAAGTT----AACTTGAGCGCG-----A-CGTTA----CT-CTTCAAAGAATTGTGCCATT-GCAGGTCGCAAGACAGTTGAATGCCAACCATTCCA--CAATACAGTAAGTAAACC--ACTGCAAAAGACTATGCAATACTGGCAC-ACCATGGACAGATCAC------------T-------TAACAACACCCAGGCAAGACTGT-----ACCATGCGTCTAGATTACCTATTGAATCGGTAACAAACTACGGTTCAGGC-AGCTCTAAGCACGGCC-------TA-TGCGCAG--AACAACAGAATACATCCAGATACTGTGGGAAACCAATAGCGCAAGGTTGACATTAAAGCC--CTG---AGATCATAGTACTTTGGTA-TCCATTAACACCACACA-AAAACA-----ATG----GATAGTCACT--------T--GAT--T-GAC-----TGGATTTTAGTGATAGTGTTG
gi|10 : ACTTAAATAAAAACTAAACA--T-------ACAGAGGTT-TT-T---GT-GCAATATT------A----A----GGTTA--C-ATCA-AACATGCAAT----AAATATTATCATTGT---TTGAATAT---T----------------AATAT-A-AAGTATGATT----GTAATATTTCAGTAGCATTTT----TGAAACTGTA-GAACA---CT-TAGCACGAAAATAATATTTCC-TTGTACACAGTTA-CTACATGGCTATTTAC-A---------C----AG--TGGTTCATG-TTTAAAACATT-CCC----TAACTATCA
gi|11 : T-TT-T---GTTACAGTATTTG-TTGA----AT--GGGTT---C-ACCA-AACAAATAAT----AATTTCTATT-TTGCCTATTGGGTGT---TATAAACTTTGGCCGACAGTAT-T-AACTGC-ACTA---GTAACGGTTGATTGGCGCTAT----TGATACACTA-CAACG---CT-TAGCAAAAAAACAAAATTTCC-TCGTGCTCAGTAACCCCGGTGACTATTTAC-A---------C----AA--CGGTTCACA-TTTAAAACAAT-CCC----TAACct
gi|12 : AAGAAATG--C-------ATAGGTGTTGTT-T---GT-GCAATATCTT-TT-T----AT--CGTCT--GC-ATCA-AAAAAATAGT----AATTGCTATT-TGGA-TATTGAGTGT---T--------TGGCTGACAATAC-ACAAGTA
gi|12 : ACAATA-C-AC-------AAGTAGGAAAACCAGATTACT-TTGTGCACATTCACCCACATAACATTTGAC-A---------C----AA--TGGTTCACATTTTAAAACATTCCCT----T-ACAA-CAT---CTTTACAAA----T-ATGGACCATTTTGAAggaaaaccagattactttgtgcacattcacccacataacatttgacacaatggttcacattttaaaacattcccttacaacatctttacaaatatggaccattttgaa
gi|13 : aagaaatgcataggtgttgtttgtgcaatatctttttatcgtctgcatcaaaaaaatagtaattgctatttggatattgagtgtttggctgAATAAT----AGTTC-------TGCCTATTGAGTGT---T--------TGACAGACAATAT-G-AAGTAC-AAAA---GTAATGGTTGACTAGCACTAC----TGAAACTATG-ACAT----CTGAAGTACAGAAACAAGATTTCC-T----------------CGTGACATTTGGC-A---------C----AA--TGGTTCACA-TTTAAAATATTCCCA-----AACTGTCAC---C-TTGTGCA----T-GTGGTATACTTTGAATATAT-------------
gi|14 : TACTTAAACTAAAAAGAAACGGGT-------ATATGTGTT-TT-----GT-TCAATAAATT-TT-A----CT--GGA--A-GC-TTTA-ACCAATCAGT----A-TTTGTGTT-TTATCTGTTCAGTGTAGTT--------TGACTGGCCATAT-A-CAGTAC-ATTA---GTAACGGTTTACTAGCTTTAT----TGAAACAATA-TCAtgaaatgtgaaaaaatg
gi|16 : TACTGAAACGAACAAGAAGGA--C-------AAATGTAGT-TT-T---GT-GCAATA-TTT-GT-A----AT--GGGTTA-A--ATCA-ACCAAATAAT----AAT
gi|18 : TGACAATTTAC-A---------G----AA--TGGTTCACATTGTAAGTCAGT-CCC----TAACAGTCATGACC-TTACACA----T-ACa
gi|19 : T-T---GT-GCAATATGTT-C--A----AT--GGGTT---CTATCA-AACAAATGAT----ACATTCTATT-TTGCCTATTGGGa
gi|2 : aTACCGAAACGAAAAAGGAACG--C-------ATGGGTATA-TT-T---GT-GCAATATTCCGTT-ATTGCATTTGGGTT--GC-TTCA-ATCACATGATTATTAATTTTTATA-TTGTCTATTGACTGT---T--------TGACCGA--ACAT-A---GTAT-ATTC---GTAACGATTGACTTGTACTAT----TCAAACAATA-TCATG---TT-AAGTACGAAAACAATATTTCC-TTTCGCACAATCCCCTACGTGGCATTTTAC-A---------C----AA--TGGTTCACATTTTG---TATTTCCC----AAACAATCTT---A-TAACACA----TTACTGACCATTACGAA-ACGT-------------GTAC--------------C--------AC---GGCTGCGCCAAA-TG----AACGAGA-CGTT-----A-CATTG----CTGCTTCAAAG-------TA-----CAGGCTGCATGACTGCTAAATGCCAAC--TTCTATTCAA-----TACGTCGACT--TTGGC-AAATACTGCGTAATAATTGCACGACCGCTGATAGATTACGTAG-T-GGGCG-------------ACTTTCAAGTTAGACCGT-----ATTATATCTCTGGTGTACCTTCTGAATCGGTTTCAAACTGCCGT----------TCTAAACAC-GCG-------TGGTACACAT--AAAAACAGAATAT----------TGGAAGAAACCGATTGCACGTAATTGACATAAGA-CCATTTA---AG--C-TA-TATGTTGGGA-ACCGTAAACACCATGTAGAAGACA-----ATG-------TGTCACA--------TGGGATAAT-GACTTTAATGGATTTTAGTGATATTGT
gi|20 : taTACTGAAACGAAGAAGAAACG--C-------ACAGGTATT-TT-T---GT-GCAAT
gi|3 : ataACTGAAAC-AACTTGAAACG--CTCATAAAGTAGGAACT-TT-TTAAGT-GAAATTTTTG-TT-A----AT--GTGTT--GC-ATCA-AACAAATAAT----AATTTTTATT-ACATCTGTTGAGTGT---T--------T-ACCGACAATAT-A-GAGTAC-ATCA---GTAACGGTTGCCTAGCGCTAT----T------ATA-CCACG---TT-AAGTATGAAAACAAGATTCCC-TTGTGCACATTCATCTACGTGATATTTTAC-A---------C----AG--TTATTTACATTTGAAAACATTCCA-----TAACAATCGT---T-TTATACA----T--CAGACCACTTTGAATACCT-------------TAA------------------GA---CAT---G--------AAA-TACAACAGCATGAACGCG-----AACGTTA----CTTCTTCAAAGAATGGC---------AGGTTACGAGACTGCTGAATGCCAACCACTCCA--CAA-----TAAATCGTTC--TTGGC-CAAGACTACATAATACTTGCACGACCGCGGATTTATCATGCAG-T-GGGTGT-------CCACGA
gi|4 : TACTGAAACGAAAAAGAAGCG--C-------ATAGGCATT-TT-T---GG-ACAATATTTT----A----AT--GGGTTA----ATTAGAATACATAAT----AATTTCTATT-TTGCCTACTAGGTGC---T--------TGAACAACAATGTCA-AAGAAC-ATTAATAGTAACGGTTGACTAGCGCTTT----AGAAACAATA-TCACG---CC-ACGCACGAAAACAATATGTAT-TCGTGCACAGTTACCCACGTGACAATTTAC-AAAAAAATTAC----AAAATTGTTCACATTTTAAAGTATTCAG-----TAACTAACAT---C-TTACACA----T-ATGGAGCACTATGGATATATTAAAATGTGAAAAAAAT--------------CAGGATACCAC---GGCTACGCCAAACTT----AACGTGGTCGTG-----C-CGTGACGAGCTGATTTAAGGAATGATGTAA-TGGCAGGTCATAAGttaga
gi|5 : aACTGAAACAAACAAAAAACG--T-------ACAGGTG--------------CAATAGTTT-T--A----AT--GGGTTA--C-ATCA-A-CAAATAAT----AATTTCTATT-T-GCCTACTGAGTGT---T--------TGACCAAC-----------------TA---GTAACG--TGACTATAGCTAT----TGAAA-AATGTCCACG---CT-AAGCACGAAAATCACATTTTCATCGTGCA--GTTACCCACATGATAATTTAC-A---------C----AC--CAGCTCATATGTTAAAACACTTTCC-----AACTATCAC---C-TTACACATTGGT-ACGGATAACTTTGAATGTATTG-----------AAATGTGGAAAAAAAAGAC--GA---CAC---GGTTACTCCAAACTG----AAGGTGAAC--------A-CTTT------TGCTTCAGGTAATTGCACAA-
gi|6 : aTACTGGCACGGCCGCAGAAAGATCACGT-GGT-GAACGTCGACGTTTAACGACGTCTGGGCAAGCCCGT-----GCCATACGTCTAGTTCAACTACGAAATCGGTTCAAAACTGCCGCCGAGAC-GGCTGTAATCAC-GCC-------TG--GTACATGCAACAACAGAATACATCTAGAAACTGTGAGGAACCGATTGGGTGAAGTTGGCATCAGAGCC--TTT---AGATCAT--T-CGTTAGAACACCATAAACGCCGTGAAGAAGACG-----A------GATGGTCACTGGGGACGCT--GAC--TAGACTG---TGGATTTAAGTGATAGTGTacacat
gi|7 : cATACTGGCACGACCGCTGATATATCACGT-A-TTGGGCATCAACGCGTAACGACGCCCAGCCAATACCGTCTTGTACCATGCGACAAGTTCACCTACGAAATCGGTT--------------AGGCCGACTTTAAACAC-ATC-------TGGTACACAC--GATAAAAGGATAAATCCTGATGCTTTGAGAGACCGATAGAACGAAATTGGCATTATA-----TTATACAGATAATA-T--GTTGGAA-AGCACTTATACCACGTAGATGTCAAGTATATGTAGAGATTG--ACT--------T--GGT--T-G-------TGAATTTTAGTGATAGTGTTG
gi|8 : tAAA-TA----TACGTGAAGG-GCTATTA-CGTTA----CTGCTTCAATGAATGGCGTAAGC-GCAGGTTGCAAGACTGATGAATGCCTACCATTCCG--CAA-----TAAGGCGACTCAGAT-C-AAA----ACGTTAT-TTTACACGACTATTGAAAGATCATGT-A-----ATGT---------ACGACGCCAATGCAGAACC-----------TACGTCTAGTTAACCTACCCAATCGGTTCCAGTCTGCCATTGAAGC-AGCTCTAAACAT-CCCCGGTACATG-TGTATAT--GGCAACAG---ACA-------ACTATGGGAAACCGATT
gi|9 : aagagataGAAACGGAAAAGAAACG--C-------ATATATGTG-TTGT---GT-GCGGTATTTT-T--A----AT--GAGTT--TC-ATCA-----AACAAA----AAT--------------AATAAA-----------------ATCAAAATTAT-A-AAATAT-GTTC---GTAACGATTAATTAACCTTGTAGTATAAAACAATA-TTATGTTACT-GAGTACGAACACAATATTTTC-TTGTGTACAGTCACCTACGTGAC-ATTTACAA---------CAATAAA--TGATTCACA---CATAGTGT----C----TAACAGTCAT---T-TTACACA----T-ACGCTCCATTTTGAATACA--------------A-----------------T--GA---CAC---G
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AACCACTAAATTGTTCATATTTTTAAATATTTCCTAATAACCTTTAACACAAACGGGCCAGTTTAAGTACATATAAAATACGTGAAAAACGATGCCACGGTCACGTAAAATAAACGTAATCCTG
Unaligned ( gi|17 ): ACTTTACACGTACAGACTAATTTCAGTATATTGAAATGCGGAAAAACAATGTCACAACTATCCCAAAATGAATGT
Alignments
lowQualScore : 111111111111111111111111111111111111111
lowQualScore : 1111111 111111111 222 11111111 111111111 111111111 11111 000000000000000000000000000000000000000 111 2222222 222222222 11111 3333333 11 22222 222222 1 77777777777777777777 22222 11 222222 22222222 22222222222 22222 1 666666666666666666666666666666666666666666666666
lowQualScore : 2 55 1111111 3 77777 3 444444444 44 888 3 3 3 6666 2 3 0 11 666 33333333 0 5555 4 7777 0 8888 444 8888 4 1 4 5 0 00 3 444444444 7777 55 8 555555555 1 00000 9999 4 222222222222222222222222222222222222222 111 6666666 6 444444444 55555 2 0 2 5555555 0 2 33 55555 111111 0 8 1 5 1 55555555555555555555 00000 1 77 8 1 66 99 8 333333 1 3 11111111 1 2 1 0 55555555555 3 3 00000 1 0 1 1 2 777777777777777777777777777777777777777777777777
lowQualScore : . .. ....... . ..... . ......... .. ... . . . .... . . . .. ... ........ . .... . .... . .... ... .... . . . . . .. . ......... .... .. . ......... . ..... .... . ....................................... ... ....... . ......... ..... . . . ....... . . .. ..... ...... . . . . . .................... ..... . .. . . .. .. . ...... . . ........ . . . . ........... . . ..... . . . . . ................................................
lowQualScore : 3 00 8888888 3 11111 1 555555555 66 999 3 3 2 5555 3 3 3 22 444 22222222 5 4444 0 7777 7 5555 555 6666 0 0 0 5 7 66 6 555555555 7777 00 8 999999999 4 33333 4444 4 000000000000000000000000000000000000000 777 2222222 0 555555555 88888 5 3 5 1111111 2 5 88 00000 000000 0 8 0 2 0 77777777777777777777 00000 4 88 2 0 44 44 0 000000 8 8 88888888 4 5 2 2 88888888888 2 2 00000 2 0 0 2 5 555555555555555555555555555555555555555555555555
consensus : TACTGAAACGAAAAAGAAACG--C-------ATAGGTGTT-TT-T---GT-GCAATATTTT-TT-A----AT--GGGTTA-GC-ATCA-AACAAATAAT----AATTTCTATT-TTGCCTATTGAGTGT---T--------TGACCGACAATAT-A-AAGTAC-ATTA---GTAACGGTTGACTAGCGCTAT----TGAAACAATA-CCACG---CT-AAGTACGAAAACAANATTTCC-TCGTGCACAGTCACCCACGTGACAATTTAC-A---------C----AA--TGGTTCACATTTTAAAACATTCCCC----TAACAATCAT---C-TTACACA----T-ACGGACCACTTTGAATACAT-------------AAAC--------------C--GA---CAC---GGCTACGCCAAA-TN----AACGTGAACGCG-----A-CGTTA----CTGCTTCAAAGAATGGCGTAA-C-GCAGGTCGCAAGACTGCTGAATGCCAACCATTCCA--CAA-----TAAGTCGACCTCGG--C-AAAGACTACGTAATACTNGCACGACCGCGGANAGATCACGT-G-T-GGGCGT-------TAACGACGCCCAGGCAAGACCGT-----ACCATACGTCTAGTTCACCTACCGAATCGGTTCCAAACTGCCGTCGAGGC-GGCTCTAAACAC-GCCTG------GTACACACGACAACAGAATACATCCAGATACTGTGAGAAACCGATTGCGCGAAGTTGGCATTAGAGCC--TTA---AGATCATA-TACGTTGGAA-ACCATNAACACCACGTAGAAGACA-----ATG----GATNGTCACT--------T--GAT--T-GACT----TGGATTTTAGTGATAGTGTTG
Reference ( family-107 ) : TACTGAAACGAAAAAGAAACG--C-------ATAGGTGTT-TT-T---GT-GCAATATTTT-TT-A----AT--GGGTTA-GC-ATCA-AACAAATAAT----AATTTCTATT-TTGCCTATTGAGTGT---T--------TGACCGACAATAT-A-AAGTAC-ATTA---GTAACGGTTGACTAGCGCTAT----TGAAACAATA-CCACG---CT-AAGTACGAAAACAANATTTCC-TCGTGCACAGTCACCCACGTGACAATTTAC-A---------C----AA--TGGTTCACATTTTAAAACATTCCCC----TAACAATCAT---C-TTACACA----T-ACGGACCACTTTGAATACAT-------------AAAC--------------C--GA---CAC---GGCTACGCCAAA-TN----AACGTGAACGCG-----A-CGTTA----CTGCTTCAAAGAATGGCGTAA-C-GCAGGTCGCAAGACTGCTGAATGCCAACCATTCCA--CAA-----TAAGTCGACCGCGG--C-AAAGACTACGTAATACTNGCACGACCGCGGANAGATCACGT-G-T-GGGCGT-------TAACGACGCCCAGGCAAGACCGT-----ACCATACGTCTAGTTCACCTACCGAATCGGTTCCAAACTGCCGTCGAGGC-GGCTCTAAACAC-GCCTG------GTGCACATAACAACAGAATACATCCAGATACTGTGAGAAACCGATTGCGCGAAGTTGGCATTAGAGCC--TTA---AGATCATA-TACGTTGGAA-ACCATNAACACCACGTAGAAGACA-----ATG----GATNGTCACT--------T--GAT--T-GACT----TGGATTTTAGTGATAGTGTTG
gi|1 : TACTGAAACAAGAAAGAAATG--C-------AGAGGTATT-TT-A---GT-GCAATATTTT-TT-A----AT--A--TTATGC-ATCA-AATAAATAAT----AATTTCTATT-TTGTCTATTGAGTGT---T--------TGACCAATAATAT-A-AAGTAC-ATTA---GTAACAGTTGACTGGAGCTAT----TGAAACAATA-CCATG---AT-AAGTTTGAAAACAAGATTTTC-TAGTGCACAGTCATACACATAACAATTTAC-A---------C----AA--TGGTGCACATGTTAAAACATTTCCCTAGTTAACAATCAT---T-TTACACA----T-ACAGACCACTTAGAATACAT-------------AAAC--------------C---A---CGCCTTGGCTATGACAAAGTT----AACTTGAGCGCG-----A-CGTTA----CT-CTTCAAAGAATTGTGCCATT-GCAGGTCGCAAGACAGTTGAATGCCAACCATTCCA--CAATACAGTAAGTAAACCACTG--CAAAAGACTATGCAATACTGGCAC-ACCATGGACAGATCAC------------T-------TAACAACACCCAGGCAAGACTGT-----ACCATGCGTCTAGATTACCTATTGAATCGGTAACAAACTACGGTTCAGGC-AGCTCTAAGCACGGCCT-------ATGCGCAGAACAACAGAATACATCCAGATACTGTGGGAAACCAATAGCGCAAGGTTGACATTAAAGCC--CTG---AGATCATAGTACTTTGGTA-TCCATTAACACCACACA-AAAACA-----ATG----GATAGTCACT--------T--GAT--T-GAC-----TGGATTTTAGTGATAGTGTTG
gi|10 : ACTTAAATAAAAACTAAACA--T-------ACAGAGGTT-TT-T---GT-GCAATATT------A----A----GGTTA--C-ATCA-AACATGCAAT----AAATATTATCATTGT---TTGAATAT---T----------------AATAT-A-AAGTATGATT----GTAATATTTCAGTAGCATTTT----TGAAACTGTA-GAACA---CT-TAGCACGAAAATAATATTTCC-TTGTACACAGTTA-CTACATGGCTATTTAC-A---------C----AG--TGGTTCATG-TTTAAAACATT-CCC----TAACTATCA
gi|11 : T-TT-T---GTTACAGTATTTG-TTGA----AT--GGGTT---C-ACCA-AACAAATAAT----AATTTCTATT-TTGCCTATTGGGTGT---TATAAACTTTGGCCGACAGTAT-T-AACTGC-ACTA---GTAACGGTTGATTGGCGCTAT----TGATACACTA-CAACG---CT-TAGCAAAAAAACAAAATTTCC-TCGTGCTCAGTAACCCCGGTGACTATTTAC-A---------C----AA--CGGTTCACA-TTTAAAACAAT-CCC----TAACct
gi|12 : AAGAAATG--C-------ATAGGTGTTGTT-T---GT-GCAATATCTT-TT-T----AT--CGTCT--GC-ATCA-AAAAAATAGT----AATTGCTATT-TGGA-TATTGAGTGT---T--------TGGCTGACAATAC-ACAAGTA
gi|12 : ACAATA-C-AC-------AAGTAGGAAAACCAGATTACT-TTGTGCACATTCACCCACATAACATTTGAC-A---------C----AA--TGGTTCACATTTTAAAACATTCCCT----T-ACAA-CAT---CTTTACAAA----T-ATGGACCATTTTGAAggaaaaccagattactttgtgcacattcacccacataacatttgacacaatggttcacattttaaaacattcccttacaacatctttacaaatatggaccattttgaa
gi|13 : aagaaatgcataggtgttgtttgtgcaatatctttttatcgtctgcatcaaaaaaatagtaattgctatttggatattgagtgtttggctgAATAAT----AGTTC-------TGCCTATTGAGTGT---T--------TGACAGACAATAT-G-AAGTAC-AAAA---GTAATGGTTGACTAGCACTAC----TGAAACTATG-ACAT----CTGAAGTACAGAAACAAGATTTCC-T----------------CGTGACATTTGGC-A---------C----AA--TGGTTCACA-TTTAAAATATTCCCA-----AACTGTCAC---C-TTGTGCA----T-GTGGTATACTTTGAATATAT-------------
gi|14 : TACTTAAACTAAAAAGAAACGGGT-------ATATGTGTT-TT-----GT-TCAATAAATT-TT-A----CT--GGA--A-GC-TTTA-ACCAATCAGT----A-TTTGTGTT-TTATCTGTTCAGTGTAGTT--------TGACTGGCCATAT-A-CAGTAC-ATTA---GTAACGGTTTACTAGCTTTAT----TGAAACAATA-TCAtgaaatgtgaaaaaatg
gi|16 : TACTGAAACGAACAAGAAGGA--C-------AAATGTAGT-TT-T---GT-GCAATA-TTT-GT-A----AT--GGGTTA-A--ATCA-ACCAAATAAT----AAT
gi|18 : TGACAATTTAC-A---------G----AA--TGGTTCACATTGTAAGTCAGT-CCC----TAACAGTCATGACC-TTACACA----T-ACa
gi|19 : T-T---GT-GCAATATGTT-C--A----AT--GGGTT---CTATCA-AACAAATGAT----ACATTCTATT-TTGCCTATTGGGa
gi|2 : aTACCGAAACGAAAAAGGAACG--C-------ATGGGTATA-TT-T---GT-GCAATATTCCGTT-ATTGCATTTGGGTT--GC-TTCA-ATCACATGATTATTAATTTTTATA-TTGTCTATTGACTGT---T--------TGACCGA--ACAT-A---GTAT-ATTC---GTAACGATTGACTTGTACTAT----TCAAACAATA-TCATG---TT-AAGTACGAAAACAATATTTCC-TTTCGCACAATCCCCTACGTGGCATTTTAC-A---------C----AA--TGGTTCACATTTTG---TATTTCCC----AAACAATCTT---A-TAACACA----TTACTGACCATTACGAA-ACGT-------------GTAC--------------C--------AC---GGCTGCGCCAAA-TG----AACGAGA-CGTT-----A-CATTG----CTGCTTCAAAG-------TA-----CAGGCTGCATGACTGCTAAATGCCAAC--TTCTATTCAA-----TACGTCGACTTTGG--C-AAATACTGCGTAATAATTGCACGACCGCTGATAGATTACGTAG-T-GGGCG-------------ACTTTCAAGTTAGACCGT-----ATTATATCTCTGGTGTACCTTCTGAATCGGTTTCAAACTGCCGT----------TCTAAACAC-GCGTG------GTACACATAAAAACAGAATAT----------TGGAAGAAACCGATTGCACGTAATTGACATAAGA-CCATTTA---AG--C-TA-TATGTTGGGA-ACCGTAAACACCATGTAGAAGACA-----ATG-------TGTCACA--------TGGGATAAT-GACTTTAATGGATTTTAGTGATATTGT
gi|20 : taTACTGAAACGAAGAAGAAACG--C-------ACAGGTATT-TT-T---GT-GCAAT
gi|3 : ataACTGAAAC-AACTTGAAACG--CTCATAAAGTAGGAACT-TT-TTAAGT-GAAATTTTTG-TT-A----AT--GTGTT--GC-ATCA-AACAAATAAT----AATTTTTATT-ACATCTGTTGAGTGT---T--------T-ACCGACAATAT-A-GAGTAC-ATCA---GTAACGGTTGCCTAGCGCTAT----T------ATA-CCACG---TT-AAGTATGAAAACAAGATTCCC-TTGTGCACATTCATCTACGTGATATTTTAC-A---------C----AG--TTATTTACATTTGAAAACATTCCA-----TAACAATCGT---T-TTATACA----T--CAGACCACTTTGAATACCT-------------TAA------------------GA---CAT---G--------AAA-TACAACAGCATGAACGCG-----AACGTTA----CTTCTTCAAAGAATGGC---------AGGTTACGAGACTGCTGAATGCCAACCACTCCA--CAA-----TAAATCGTTCTTGG--C-CAAGACTACATAATACTTGCACGACCGCGGATTTATCATGCAG-T-GGGTGT-------CCACGA
gi|4 : TACTGAAACGAAAAAGAAGCG--C-------ATAGGCATT-TT-T---GG-ACAATATTTT----A----AT--GGGTTA----ATTAGAATACATAAT----AATTTCTATT-TTGCCTACTAGGTGC---T--------TGAACAACAATGTCA-AAGAAC-ATTAATAGTAACGGTTGACTAGCGCTTT----AGAAACAATA-TCACG---CC-ACGCACGAAAACAATATGTAT-TCGTGCACAGTTACCCACGTGACAATTTAC-AAAAAAATTAC----AAAATTGTTCACATTTTAAAGTATTCAG-----TAACTAACAT---C-TTACACA----T-ATGGAGCACTATGGATATATTAAAATGTGAAAAAAAT--------------CAGGATACCAC---GGCTACGCCAAACTT----AACGTGGTCGTG-----C-CGTGACGAGCTGATTTAAGGAATGATGTAA-TGGCAGGTCATAAGttaga
gi|5 : aACTGAAACAAACAAAAAACG--T-------ACAGGTG--------------CAATAGTTT-T--A----AT--GGGTTA--C-ATCA-A-CAAATAAT----AATTTCTATT-T-GCCTACTGAGTGT---T--------TGACCAAC-----------------TA---GTAACG--TGACTATAGCTAT----TGAAA-AATGTCCACG---CT-AAGCACGAAAATCACATTTTCATCGTGCA--GTTACCCACATGATAATTTAC-A---------C----AC--CAGCTCATATGTTAAAACACTTTCC-----AACTATCAC---C-TTACACATTGGT-ACGGATAACTTTGAATGTATTG-----------AAATGTGGAAAAAAAAGAC--GA---CAC---GGTTACTCCAAACTG----AAGGTGAAC--------A-CTTT------TGCTTCAGGTAATTGCACAA-
gi|6 : aTACTGGCACGGCCGCAGAAAGATCACGT-GGT-GAACGTCGACGTTTAACGACGTCTGGGCAAGCCCGT-----GCCATACGTCTAGTTCAACTACGAAATCGGTTCAAAACTGCCGCCGAGAC-GGCTGTAATCAC-GCCTG------GTACATGCAACAACAGAATACATCTAGAAACTGTGAGGAACCGATTGGGTGAAGTTGGCATCAGAGCC--TTT---AGATCAT--T-CGTTAGAACACCATAAACGCCGTGAAGAAGACG-----A------GATGGTCACTGGGGACGCT--GAC--TAGACTG---TGGATTTAAGTGATAGTGTacacat
gi|7 : cATACTGGCACGACCGCTGATATATCACGT-A-TTGGGCATCAACGCGTAACGACGCCCAGCCAATACCGTCTTGTACCATGCGACAAGTTCACCTACGAAATCGGTT--------------AGGCCGACTTTAAACAC-ATCTG------GTACACACGATAAAAGGATAAATCCTGATGCTTTGAGAGACCGATAGAACGAAATTGGCATTATA-----TTATACAGATAATA-T--GTTGGAA-AGCACTTATACCACGTAGATGTCAAGTATATGTAGAGATTG--ACT--------T--GGT--T-G-------TGAATTTTAGTGATAGTGTTG
gi|8 : tAAA-TA----TACGTGAAGG-GCTATTA-CGTTA----CTGCTTCAATGAATGGCGTAAGC-GCAGGTTGCAAGACTGATGAATGCCTACCATTCCG--CAA-----TAAGGCGACT-CAGATC-AAA----ACGTTAT-TTTACACGACTATTGAAAGATCATGT-A-----ATGT---------ACGACGCCAATGCAGAACC-----------TACGTCTAGTTAACCTACCCAATCGGTTCCAGTCTGCCATTGAAGC-AGCTCTAAACAT-CCCCGGTACATGTGTATATGGCAACAG---ACA-------ACTATGGGAAACCGATT
gi|9 : aagagataGAAACGGAAAAGAAACG--C-------ATATATGTG-TTGT---GT-GCGGTATTTT-T--A----AT--GAGTT--TC-ATCA-----AACAAA----AAT--------------AATAAA-----------------ATCAAAATTAT-A-AAATAT-GTTC---GTAACGATTAATTAACCTTGTAGTATAAAACAATA-TTATGTTACT-GAGTACGAACACAATATTTTC-TTGTGTACAGTCACCTACGTGAC-ATTTACAA---------CAATAAA--TGATTCACA---CATAGTGT----C----TAACAGTCAT---T-TTACACA----T-ACGCTCCATTTTGAATACA--------------A-----------------T--GA---CAC---G
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AACCACTAAATTGTTCATATTTTTAAATATTTCCTAATAACCTTTAACACAAACGGGCCAGTTTAAGTACATATAAAATACGTGAAAAACGATGCCACGGTCACGTAAAATAAACGTAATCCTG
Unaligned ( gi|17 ): ACTTTACACGTACAGACTAATTTCAGTATATTGAAATGCGGAAAAACAATGTCACAACTATCCCAAAATGAATGT
Alignments
lowQualScore : 111111111111111111111111111111111111111
lowQualScore : 1111111 111111111 222 11111111 111111111 111111111 11111 000000000000000000000000000000000000000 111 2222222 222222222 11111 3333333 11 22222 11 1 77777777777777777777 22222 11 222222 22222222 22222222222 22222 1 666666666666666666666666666666666666666666666666
lowQualScore : 2 55 1111111 3 77777 3 444444444 44 888 3 3 3 6666 2 3 0 11 666 33333333 0 5555 4 7777 0 8888 444 8888 4 1 4 5 0 00 3 444444444 7777 55 8 555555555 1 00000 9999 4 222222222222222222222222222222222222222 111 6666666 6 444444444 55555 2 0 2 5555555 0 2 33 55555 6 0 33 0 8 1 5 1 55555555555555555555 00000 1 77 8 1 66 99 8 333333 1 3 11111111 1 2 1 0 55555555555 3 3 00000 1 0 1 1 2 777777777777777777777777777777777777777777777777
lowQualScore : . .. ....... . ..... . ......... .. ... . . . .... . . . .. ... ........ . .... . .... . .... ... .... . . . . . .. . ......... .... .. . ......... . ..... .... . ....................................... ... ....... . ......... ..... . . . ....... . . .. ..... . . .. . . . . . .................... ..... . .. . . .. .. . ...... . . ........ . . . . ........... . . ..... . . . . . ................................................
lowQualScore : 3 00 8888888 3 11111 1 555555555 66 999 3 3 2 5555 3 3 3 22 444 22222222 5 4444 0 7777 7 5555 555 6666 0 0 0 5 7 66 6 555555555 7777 00 8 999999999 4 33333 4444 4 000000000000000000000000000000000000000 777 2222222 0 555555555 88888 5 3 5 1111111 2 5 88 00000 5 2 88 0 8 0 2 0 77777777777777777777 00000 4 88 2 0 44 44 0 000000 4 8 88888888 4 5 2 2 88888888888 2 2 00000 2 0 0 2 5 555555555555555555555555555555555555555555555555
consensus : TACTGAAACGAAAAAGAAACG--C-------ATAGGTGTT-TT-T---GT-GCAATATTTT-TT-A----AT--GGGTTA-GC-ATCA-AACAAATAAT----AATTTCTATT-TTGCCTATTGAGTGT---T--------TGACCGACAATAT-A-AAGTAC-ATTA---GTAACGGTTGACTAGCGCTAT----TGAAACAATA-CCACG---CT-AAGTACGAAAACAANATTTCC-TCGTGCACAGTCACCCACGTGACAATTTAC-A---------C----AA--TGGTTCACATTTTAAAACATTCCCC----TAACAATCAT---C-TTACACA----T-ACGGACCACTTTGAATACAT-------------AAAC--------------C--GA---CAC---GGCTACGCCAAA-TN----AACGTGAACGCG-----A-CGTTA----CTGCTTCAAAGAATGGCGTAA-C-GCAGGTCGCAAGACTGCTGAATGCCAACCATTCCA--CAA-----TAAGTCGACCTCGG--C-AAAGACTACGTAATACTNGCACGACCGCGGANAGATCACGT-G-T-GGGCGT-------TAACGACGCCCAGGCAAGACCGT-----ACCATACGTCTAGTTCACCTACCGAATCGGTTCCAAACTGCCGTCGAGGC-GGCTCTAAACAC-GCCTGGTAC------ACACGACAACAGAATACATCCAGATACTGTGAGAAACCGATTGCGCGAAGTTGGCATTAGAGCC--TTA---AGATCATA-TACGTTGGAA-ACCATNAACACCACGTAGAAGACA-----ATG----GATNGTCACT--------T--GAT--T-GACT----TGGATTTTAGTGATAGTGTTG
Reference ( family-107 ) : TACTGAAACGAAAAAGAAACG--C-------ATAGGTGTT-TT-T---GT-GCAATATTTT-TT-A----AT--GGGTTA-GC-ATCA-AACAAATAAT----AATTTCTATT-TTGCCTATTGAGTGT---T--------TGACCGACAATAT-A-AAGTAC-ATTA---GTAACGGTTGACTAGCGCTAT----TGAAACAATA-CCACG---CT-AAGTACGAAAACAANATTTCC-TCGTGCACAGTCACCCACGTGACAATTTAC-A---------C----AA--TGGTTCACATTTTAAAACATTCCCC----TAACAATCAT---C-TTACACA----T-ACGGACCACTTTGAATACAT-------------AAAC--------------C--GA---CAC---GGCTACGCCAAA-TN----AACGTGAACGCG-----A-CGTTA----CTGCTTCAAAGAATGGCGTAA-C-GCAGGTCGCAAGACTGCTGAATGCCAACCATTCCA--CAA-----TAAGTCGACCTCGG--C-AAAGACTACGTAATACTNGCACGACCGCGGANAGATCACGT-G-T-GGGCGT-------TAACGACGCCCAGGCAAGACCGT-----ACCATACGTCTAGTTCACCTACCGAATCGGTTCCAAACTGCCGTCGAGGC-GGCTCTAAACAC-GCCTGGTAC------ACACGACAACAGAATACATCCAGATACTGTGAGAAACCGATTGCGCGAAGTTGGCATTAGAGCC--TTA---AGATCATA-TACGTTGGAA-ACCATNAACACCACGTAGAAGACA-----ATG----GATNGTCACT--------T--GAT--T-GACT----TGGATTTTAGTGATAGTGTTG
gi|1 : TACTGAAACAAGAAAGAAATG--C-------AGAGGTATT-TT-A---GT-GCAATATTTT-TT-A----AT--A--TTATGC-ATCA-AATAAATAAT----AATTTCTATT-TTGTCTATTGAGTGT---T--------TGACCAATAATAT-A-AAGTAC-ATTA---GTAACAGTTGACTGGAGCTAT----TGAAACAATA-CCATG---AT-AAGTTTGAAAACAAGATTTTC-TAGTGCACAGTCATACACATAACAATTTAC-A---------C----AA--TGGTGCACATGTTAAAACATTTCCCTAGTTAACAATCAT---T-TTACACA----T-ACAGACCACTTAGAATACAT-------------AAAC--------------C---A---CGCCTTGGCTATGACAAAGTT----AACTTGAGCGCG-----A-CGTTA----CT-CTTCAAAGAATTGTGCCATT-GCAGGTCGCAAGACAGTTGAATGCCAACCATTCCA--CAATACAGTAAGTAAACCACTG--CAAAAGACTATGCAATACTGGCAC-ACCATGGACAGATCAC------------T-------TAACAACACCCAGGCAAGACTGT-----ACCATGCGTCTAGATTACCTATTGAATCGGTAACAAACTACGGTTCAGGC-AGCTCTAAGCACGGCCT-ATGC------GCAGAACAACAGAATACATCCAGATACTGTGGGAAACCAATAGCGCAAGGTTGACATTAAAGCC--CTG---AGATCATAGTACTTTGGTA-TCCATTAACACCACACA-AAAACA-----ATG----GATAGTCACT--------T--GAT--T-GAC-----TGGATTTTAGTGATAGTGTTG
gi|10 : ACTTAAATAAAAACTAAACA--T-------ACAGAGGTT-TT-T---GT-GCAATATT------A----A----GGTTA--C-ATCA-AACATGCAAT----AAATATTATCATTGT---TTGAATAT---T----------------AATAT-A-AAGTATGATT----GTAATATTTCAGTAGCATTTT----TGAAACTGTA-GAACA---CT-TAGCACGAAAATAATATTTCC-TTGTACACAGTTA-CTACATGGCTATTTAC-A---------C----AG--TGGTTCATG-TTTAAAACATT-CCC----TAACTATCA
gi|11 : T-TT-T---GTTACAGTATTTG-TTGA----AT--GGGTT---C-ACCA-AACAAATAAT----AATTTCTATT-TTGCCTATTGGGTGT---TATAAACTTTGGCCGACAGTAT-T-AACTGC-ACTA---GTAACGGTTGATTGGCGCTAT----TGATACACTA-CAACG---CT-TAGCAAAAAAACAAAATTTCC-TCGTGCTCAGTAACCCCGGTGACTATTTAC-A---------C----AA--CGGTTCACA-TTTAAAACAAT-CCC----TAACct
gi|12 : AAGAAATG--C-------ATAGGTGTTGTT-T---GT-GCAATATCTT-TT-T----AT--CGTCT--GC-ATCA-AAAAAATAGT----AATTGCTATT-TGGA-TATTGAGTGT---T--------TGGCTGACAATAC-ACAAGTA
gi|12 : ACAATA-C-AC-------AAGTAGGAAAACCAGATTACT-TTGTGCACATTCACCCACATAACATTTGAC-A---------C----AA--TGGTTCACATTTTAAAACATTCCCT----T-ACAA-CAT---CTTTACAAA----T-ATGGACCATTTTGAAggaaaaccagattactttgtgcacattcacccacataacatttgacacaatggttcacattttaaaacattcccttacaacatctttacaaatatggaccattttgaa
gi|13 : aagaaatgcataggtgttgtttgtgcaatatctttttatcgtctgcatcaaaaaaatagtaattgctatttggatattgagtgtttggctgAATAAT----AGTTC-------TGCCTATTGAGTGT---T--------TGACAGACAATAT-G-AAGTAC-AAAA---GTAATGGTTGACTAGCACTAC----TGAAACTATG-ACAT----CTGAAGTACAGAAACAAGATTTCC-T----------------CGTGACATTTGGC-A---------C----AA--TGGTTCACA-TTTAAAATATTCCCA-----AACTGTCAC---C-TTGTGCA----T-GTGGTATACTTTGAATATAT-------------
gi|14 : TACTTAAACTAAAAAGAAACGGGT-------ATATGTGTT-TT-----GT-TCAATAAATT-TT-A----CT--GGA--A-GC-TTTA-ACCAATCAGT----A-TTTGTGTT-TTATCTGTTCAGTGTAGTT--------TGACTGGCCATAT-A-CAGTAC-ATTA---GTAACGGTTTACTAGCTTTAT----TGAAACAATA-TCAtgaaatgtgaaaaaatg
gi|16 : TACTGAAACGAACAAGAAGGA--C-------AAATGTAGT-TT-T---GT-GCAATA-TTT-GT-A----AT--GGGTTA-A--ATCA-ACCAAATAAT----AAT
gi|18 : TGACAATTTAC-A---------G----AA--TGGTTCACATTGTAAGTCAGT-CCC----TAACAGTCATGACC-TTACACA----T-ACa
gi|19 : T-T---GT-GCAATATGTT-C--A----AT--GGGTT---CTATCA-AACAAATGAT----ACATTCTATT-TTGCCTATTGGGa
gi|2 : aTACCGAAACGAAAAAGGAACG--C-------ATGGGTATA-TT-T---GT-GCAATATTCCGTT-ATTGCATTTGGGTT--GC-TTCA-ATCACATGATTATTAATTTTTATA-TTGTCTATTGACTGT---T--------TGACCGA--ACAT-A---GTAT-ATTC---GTAACGATTGACTTGTACTAT----TCAAACAATA-TCATG---TT-AAGTACGAAAACAATATTTCC-TTTCGCACAATCCCCTACGTGGCATTTTAC-A---------C----AA--TGGTTCACATTTTG---TATTTCCC----AAACAATCTT---A-TAACACA----TTACTGACCATTACGAA-ACGT-------------GTAC--------------C--------AC---GGCTGCGCCAAA-TG----AACGAGA-CGTT-----A-CATTG----CTGCTTCAAAG-------TA-----CAGGCTGCATGACTGCTAAATGCCAAC--TTCTATTCAA-----TACGTCGACTTTGG--C-AAATACTGCGTAATAATTGCACGACCGCTGATAGATTACGTAG-T-GGGCG-------------ACTTTCAAGTTAGACCGT-----ATTATATCTCTGGTGTACCTTCTGAATCGGTTTCAAACTGCCGT----------TCTAAACAC-GCGTGGTAC------ACATAAAAACAGAATAT----------TGGAAGAAACCGATTGCACGTAATTGACATAAGA-CCATTTA---AG--C-TA-TATGTTGGGA-ACCGTAAACACCATGTAGAAGACA-----ATG-------TGTCACA--------TGGGATAAT-GACTTTAATGGATTTTAGTGATATTGT
gi|20 : taTACTGAAACGAAGAAGAAACG--C-------ACAGGTATT-TT-T---GT-GCAAT
gi|3 : ataACTGAAAC-AACTTGAAACG--CTCATAAAGTAGGAACT-TT-TTAAGT-GAAATTTTTG-TT-A----AT--GTGTT--GC-ATCA-AACAAATAAT----AATTTTTATT-ACATCTGTTGAGTGT---T--------T-ACCGACAATAT-A-GAGTAC-ATCA---GTAACGGTTGCCTAGCGCTAT----T------ATA-CCACG---TT-AAGTATGAAAACAAGATTCCC-TTGTGCACATTCATCTACGTGATATTTTAC-A---------C----AG--TTATTTACATTTGAAAACATTCCA-----TAACAATCGT---T-TTATACA----T--CAGACCACTTTGAATACCT-------------TAA------------------GA---CAT---G--------AAA-TACAACAGCATGAACGCG-----AACGTTA----CTTCTTCAAAGAATGGC---------AGGTTACGAGACTGCTGAATGCCAACCACTCCA--CAA-----TAAATCGTTCTTGG--C-CAAGACTACATAATACTTGCACGACCGCGGATTTATCATGCAG-T-GGGTGT-------CCACGA
gi|4 : TACTGAAACGAAAAAGAAGCG--C-------ATAGGCATT-TT-T---GG-ACAATATTTT----A----AT--GGGTTA----ATTAGAATACATAAT----AATTTCTATT-TTGCCTACTAGGTGC---T--------TGAACAACAATGTCA-AAGAAC-ATTAATAGTAACGGTTGACTAGCGCTTT----AGAAACAATA-TCACG---CC-ACGCACGAAAACAATATGTAT-TCGTGCACAGTTACCCACGTGACAATTTAC-AAAAAAATTAC----AAAATTGTTCACATTTTAAAGTATTCAG-----TAACTAACAT---C-TTACACA----T-ATGGAGCACTATGGATATATTAAAATGTGAAAAAAAT--------------CAGGATACCAC---GGCTACGCCAAACTT----AACGTGGTCGTG-----C-CGTGACGAGCTGATTTAAGGAATGATGTAA-TGGCAGGTCATAAGttaga
gi|5 : aACTGAAACAAACAAAAAACG--T-------ACAGGTG--------------CAATAGTTT-T--A----AT--GGGTTA--C-ATCA-A-CAAATAAT----AATTTCTATT-T-GCCTACTGAGTGT---T--------TGACCAAC-----------------TA---GTAACG--TGACTATAGCTAT----TGAAA-AATGTCCACG---CT-AAGCACGAAAATCACATTTTCATCGTGCA--GTTACCCACATGATAATTTAC-A---------C----AC--CAGCTCATATGTTAAAACACTTTCC-----AACTATCAC---C-TTACACATTGGT-ACGGATAACTTTGAATGTATTG-----------AAATGTGGAAAAAAAAGAC--GA---CAC---GGTTACTCCAAACTG----AAGGTGAAC--------A-CTTT------TGCTTCAGGTAATTGCACAA-
gi|6 : aTACTGGCACGGCCGCAGAAAGATCACGT-GGT-GAACGTCGACGTTTAACGACGTCTGGGCAAGCCCGT-----GCCATACGTCTAGTTCAACTACGAAATCGGTTCAAAACTGCCGCCGAGAC-GGCTGTAATCAC-GCCTGGTAC------ATGCAACAACAGAATACATCTAGAAACTGTGAGGAACCGATTGGGTGAAGTTGGCATCAGAGCC--TTT---AGATCAT--T-CGTTAGAACACCATAAACGCCGTGAAGAAGACG-----A------GATGGTCACTGGGGACGCT--GAC--TAGACTG---TGGATTTAAGTGATAGTGTacacat
gi|7 : cATACTGGCACGACCGCTGATATATCACGT-A-TTGGGCATCAACGCGTAACGACGCCCAGCCAATACCGTCTTGTACCATGCGACAAGTTCACCTACGAAATCGGTT--------------AGGCCGACTTTAAACAC-ATCTGGTAC------ACACGATAAAAGGATAAATCCTGATGCTTTGAGAGACCGATAGAACGAAATTGGCATTATA-----TTATACAGATAATA-T--GTTGGAA-AGCACTTATACCACGTAGATGTCAAGTATATGTAGAGATTG--ACT--------T--GGT--T-G-------TGAATTTTAGTGATAGTGTTG
gi|8 : tAAA-TA----TACGTGAAGG-GCTATTA-CGTTA----CTGCTTCAATGAATGGCGTAAGC-GCAGGTTGCAAGACTGATGAATGCCTACCATTCCG--CAA-----TAAGGCGAC-TCAGATC-AAA----ACGTTAT-TTTACACGACTATTGAAAGATCATGT-A-----ATGT---------ACGACGCCAATGCAGAACC-----------TACGTCTAGTTAACCTACCCAATCGGTTCCAGTCTGCCATTGAAGC-AGCTCTAAACAT-CCCCGGTACATGTGTATATGGCAACAG---ACA-------ACTATGGGAAACCGATT
gi|9 : aagagataGAAACGGAAAAGAAACG--C-------ATATATGTG-TTGT---GT-GCGGTATTTT-T--A----AT--GAGTT--TC-ATCA-----AACAAA----AAT--------------AATAAA-----------------ATCAAAATTAT-A-AAATAT-GTTC---GTAACGATTAATTAACCTTGTAGTATAAAACAATA-TTATGTTACT-GAGTACGAACACAATATTTTC-TTGTGTACAGTCACCTACGTGAC-ATTTACAA---------CAATAAA--TGATTCACA---CATAGTGT----C----TAACAGTCAT---T-TTACACA----T-ACGCTCCATTTTGAATACA--------------A-----------------T--GA---CAC---G
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AACCACTAAATTGTTCATATTTTTAAATATTTCCTAATAACCTTTAACACAAACGGGCCAGTTTAAGTACATATAAAATACGTGAAAAACGATGCCACGGTCACGTAAAATAAACGTAATCCTG
Unaligned ( gi|17 ): ACTTTACACGTACAGACTAATTTCAGTATATTGAAATGCGGAAAAACAATGTCACAACTATCCCAAAATGAATGT
Alignments
lowQualScore : 111111111111111111111111111111111111111
lowQualScore : 1111111 111111111 222 11111111 111111111 111111111 11111 000000000000000000000000000000000000000 111 2222222 222222222 11111 3333333 11 22222 11 1 77777777777777777777 22222 11 222222 22222222 22222222222 22222 1 666666666666666666666666666666666666666666666666
lowQualScore : 2 55 1111111 3 77777 3 444444444 44 888 3 3 3 6666 2 3 0 11 666 33333333 0 5555 4 7777 0 8888 444 8888 4 1 4 5 0 00 3 444444444 7777 55 8 555555555 1 00000 9999 4 222222222222222222222222222222222222222 111 6666666 6 444444444 55555 2 0 2 5555555 0 2 33 55555 6 0 33 0 8 1 5 1 55555555555555555555 00000 1 77 8 1 66 99 8 333333 1 3 11111111 1 2 1 0 55555555555 3 3 00000 1 0 1 1 2 777777777777777777777777777777777777777777777777
lowQualScore : . .. ....... . ..... . ......... .. ... . . . .... . . . .. ... ........ . .... . .... . .... ... .... . . . . . .. . ......... .... .. . ......... . ..... .... . ....................................... ... ....... . ......... ..... . . . ....... . . .. ..... . . .. . . . . . .................... ..... . .. . . .. .. . ...... . . ........ . . . . ........... . . ..... . . . . . ................................................
lowQualScore : 3 00 8888888 3 11111 1 555555555 66 999 3 3 2 5555 3 3 3 22 444 22222222 5 4444 0 7777 7 5555 555 6666 0 0 0 5 7 66 6 555555555 7777 00 8 999999999 4 33333 4444 4 000000000000000000000000000000000000000 777 2222222 0 555555555 88888 5 3 5 1111111 2 5 88 00000 5 2 88 0 8 0 2 0 77777777777777777777 00000 4 88 2 0 44 44 0 000000 4 8 88888888 4 5 2 2 88888888888 2 2 00000 2 0 0 2 5 555555555555555555555555555555555555555555555555
consensus : TACTGAAACGAAAAAGAAACG--C-------ATAGGTGTT-TT-T---GT-GCAATATTTT-TT-A----AT--GGGTTA-GC-ATCA-AACAAATAAT----AATTTCTATT-TTGCCTATTGAGTGT---T--------TGACCGACAATAT-A-AAGTAC-ATTA---GTAACGGTTGACTAGCGCTAT----TGAAACAATA-CCACG---CT-AAGTACGAAAACAANATTTCC-TCGTGCACAGTCACCCACGTGACAATTTAC-A---------C----AA--TGGTTCACATTTTAAAACATTCCCC----TAACAATCAT---C-TTACACA----T-ACGGACCACTTTGAATACAT-------------AAAC--------------C--GA---CAC---GGCTACGCCAAA-TN----AACGTGAACGCG-----A-CGTTA----CTGCTTCAAAGAATGGCGTAA-C-GCAGGTCGCAAGACTGCTGAATGCCAACCATTCCA--CAA-----TAAGTCGACCTCGG--C-AAAGACTACGTAATACTNGCACGACCGCGGANAGATCACGT-G-T-GGGCGT-------TAACGACGCCCAGGCAAGACCGT-----ACCATACGTCTAGTTCACCTACCGAATCGGTTCCAAACTGCCGTCGAGGC-GGCTCTAAACAC-GCCTGGTAC------ACACGACAACAGAATACATCCAGATACTGTGAGAAACCGATTGCGCGAAGTTGGCATTAGAGCC--TTA---AGATCATA-TACGTTGGAA-ACCATNAACACCACGTAGAAGACA-----ATG----GATNGTCACT--------T--GAT--T-GACT----TGGATTTTAGTGATAGTGTTG
Reference ( family-107 ) : TACTGAAACGAAAAAGAAACG--C-------ATAGGTGTT-TT-T---GT-GCAATATTTT-TT-A----AT--GGGTTA-GC-ATCA-AACAAATAAT----AATTTCTATT-TTGCCTATTGAGTGT---T--------TGACCGACAATAT-A-AAGTAC-ATTA---GTAACGGTTGACTAGCGCTAT----TGAAACAATA-CCACG---CT-AAGTACGAAAACAANATTTCC-TCGTGCACAGTCACCCACGTGACAATTTAC-A---------C----AA--TGGTTCACATTTTAAAACATTCCCC----TAACAATCAT---C-TTACACA----T-ACGGACCACTTTGAATACAT-------------AAAC--------------C--GA---CAC---GGCTACGCCAAA-TN----AACGTGAACGCG-----A-CGTTA----CTGCTTCAAAGAATGGCGTAA-C-GCAGGTCGCAAGACTGCTGAATGCCAACCATTCCA--CAA-----TAAGTCGACCTCGG--C-AAAGACTACGTAATACTNGCACGACCGCGGANAGATCACGT-G-T-GGGCGT-------TAACGACGCCCAGGCAAGACCGT-----ACCATACGTCTAGTTCACCTACCGAATCGGTTCCAAACTGCCGTCGAGGC-GGCTCTAAACAC-GCCTGGTAC------ACACGACAACAGAATACATCCAGATACTGTGAGAAACCGATTGCGCGAAGTTGGCATTAGAGCC--TTA---AGATCATA-TACGTTGGAA-ACCATNAACACCACGTAGAAGACA-----ATG----GATNGTCACT--------T--GAT--T-GACT----TGGATTTTAGTGATAGTGTTG
gi|1 : TACTGAAACAAGAAAGAAATG--C-------AGAGGTATT-TT-A---GT-GCAATATTTT-TT-A----AT--A--TTATGC-ATCA-AATAAATAAT----AATTTCTATT-TTGTCTATTGAGTGT---T--------TGACCAATAATAT-A-AAGTAC-ATTA---GTAACAGTTGACTGGAGCTAT----TGAAACAATA-CCATG---AT-AAGTTTGAAAACAAGATTTTC-TAGTGCACAGTCATACACATAACAATTTAC-A---------C----AA--TGGTGCACATGTTAAAACATTTCCCTAGTTAACAATCAT---T-TTACACA----T-ACAGACCACTTAGAATACAT-------------AAAC--------------C---A---CGCCTTGGCTATGACAAAGTT----AACTTGAGCGCG-----A-CGTTA----CT-CTTCAAAGAATTGTGCCATT-GCAGGTCGCAAGACAGTTGAATGCCAACCATTCCA--CAATACAGTAAGTAAACCACTG--CAAAAGACTATGCAATACTGGCAC-ACCATGGACAGATCAC------------T-------TAACAACACCCAGGCAAGACTGT-----ACCATGCGTCTAGATTACCTATTGAATCGGTAACAAACTACGGTTCAGGC-AGCTCTAAGCACGGCCT-ATGC------GCAGAACAACAGAATACATCCAGATACTGTGGGAAACCAATAGCGCAAGGTTGACATTAAAGCC--CTG---AGATCATAGTACTTTGGTA-TCCATTAACACCACACA-AAAACA-----ATG----GATAGTCACT--------T--GAT--T-GAC-----TGGATTTTAGTGATAGTGTTG
gi|10 : ACTTAAATAAAAACTAAACA--T-------ACAGAGGTT-TT-T---GT-GCAATATT------A----A----GGTTA--C-ATCA-AACATGCAAT----AAATATTATCATTGT---TTGAATAT---T----------------AATAT-A-AAGTATGATT----GTAATATTTCAGTAGCATTTT----TGAAACTGTA-GAACA---CT-TAGCACGAAAATAATATTTCC-TTGTACACAGTTA-CTACATGGCTATTTAC-A---------C----AG--TGGTTCATG-TTTAAAACATT-CCC----TAACTATCA
gi|11 : T-TT-T---GTTACAGTATTTG-TTGA----AT--GGGTT---C-ACCA-AACAAATAAT----AATTTCTATT-TTGCCTATTGGGTGT---TATAAACTTTGGCCGACAGTAT-T-AACTGC-ACTA---GTAACGGTTGATTGGCGCTAT----TGATACACTA-CAACG---CT-TAGCAAAAAAACAAAATTTCC-TCGTGCTCAGTAACCCCGGTGACTATTTAC-A---------C----AA--CGGTTCACA-TTTAAAACAAT-CCC----TAACct
gi|12 : AAGAAATG--C-------ATAGGTGTTGTT-T---GT-GCAATATCTT-TT-T----AT--CGTCT--GC-ATCA-AAAAAATAGT----AATTGCTATT-TGGA-TATTGAGTGT---T--------TGGCTGACAATAC-ACAAGTA
gi|12 : ACAATA-C-AC-------AAGTAGGAAAACCAGATTACT-TTGTGCACATTCACCCACATAACATTTGAC-A---------C----AA--TGGTTCACATTTTAAAACATTCCCT----T-ACAA-CAT---CTTTACAAA----T-ATGGACCATTTTGAAggaaaaccagattactttgtgcacattcacccacataacatttgacacaatggttcacattttaaaacattcccttacaacatctttacaaatatggaccattttgaa
gi|13 : aagaaatgcataggtgttgtttgtgcaatatctttttatcgtctgcatcaaaaaaatagtaattgctatttggatattgagtgtttggctgAATAAT----AGTTC-------TGCCTATTGAGTGT---T--------TGACAGACAATAT-G-AAGTAC-AAAA---GTAATGGTTGACTAGCACTAC----TGAAACTATG-ACAT----CTGAAGTACAGAAACAAGATTTCC-T----------------CGTGACATTTGGC-A---------C----AA--TGGTTCACA-TTTAAAATATTCCCA-----AACTGTCAC---C-TTGTGCA----T-GTGGTATACTTTGAATATAT-------------
gi|14 : TACTTAAACTAAAAAGAAACGGGT-------ATATGTGTT-TT-----GT-TCAATAAATT-TT-A----CT--GGA--A-GC-TTTA-ACCAATCAGT----A-TTTGTGTT-TTATCTGTTCAGTGTAGTT--------TGACTGGCCATAT-A-CAGTAC-ATTA---GTAACGGTTTACTAGCTTTAT----TGAAACAATA-TCAtgaaatgtgaaaaaatg
gi|16 : TACTGAAACGAACAAGAAGGA--C-------AAATGTAGT-TT-T---GT-GCAATA-TTT-GT-A----AT--GGGTTA-A--ATCA-ACCAAATAAT----AAT
gi|18 : TGACAATTTAC-A---------G----AA--TGGTTCACATTGTAAGTCAGT-CCC----TAACAGTCATGACC-TTACACA----T-ACa
gi|19 : T-T---GT-GCAATATGTT-C--A----AT--GGGTT---CTATCA-AACAAATGAT----ACATTCTATT-TTGCCTATTGGGa
gi|2 : aTACCGAAACGAAAAAGGAACG--C-------ATGGGTATA-TT-T---GT-GCAATATTCCGTT-ATTGCATTTGGGTT--GC-TTCA-ATCACATGATTATTAATTTTTATA-TTGTCTATTGACTGT---T--------TGACCGA--ACAT-A---GTAT-ATTC---GTAACGATTGACTTGTACTAT----TCAAACAATA-TCATG---TT-AAGTACGAAAACAATATTTCC-TTTCGCACAATCCCCTACGTGGCATTTTAC-A---------C----AA--TGGTTCACATTTTG---TATTTCCC----AAACAATCTT---A-TAACACA----TTACTGACCATTACGAA-ACGT-------------GTAC--------------C--------AC---GGCTGCGCCAAA-TG----AACGAGA-CGTT-----A-CATTG----CTGCTTCAAAG-------TA-----CAGGCTGCATGACTGCTAAATGCCAAC--TTCTATTCAA-----TACGTCGACTTTGG--C-AAATACTGCGTAATAATTGCACGACCGCTGATAGATTACGTAG-T-GGGCG-------------ACTTTCAAGTTAGACCGT-----ATTATATCTCTGGTGTACCTTCTGAATCGGTTTCAAACTGCCGT----------TCTAAACAC-GCGTGGTAC------ACATAAAAACAGAATAT----------TGGAAGAAACCGATTGCACGTAATTGACATAAGA-CCATTTA---AG--C-TA-TATGTTGGGA-ACCGTAAACACCATGTAGAAGACA-----ATG-------TGTCACA--------TGGGATAAT-GACTTTAATGGATTTTAGTGATATTGT
gi|20 : taTACTGAAACGAAGAAGAAACG--C-------ACAGGTATT-TT-T---GT-GCAAT
gi|3 : ataACTGAAAC-AACTTGAAACG--CTCATAAAGTAGGAACT-TT-TTAAGT-GAAATTTTTG-TT-A----AT--GTGTT--GC-ATCA-AACAAATAAT----AATTTTTATT-ACATCTGTTGAGTGT---T--------T-ACCGACAATAT-A-GAGTAC-ATCA---GTAACGGTTGCCTAGCGCTAT----T------ATA-CCACG---TT-AAGTATGAAAACAAGATTCCC-TTGTGCACATTCATCTACGTGATATTTTAC-A---------C----AG--TTATTTACATTTGAAAACATTCCA-----TAACAATCGT---T-TTATACA----T--CAGACCACTTTGAATACCT-------------TAA------------------GA---CAT---G--------AAA-TACAACAGCATGAACGCG-----AACGTTA----CTTCTTCAAAGAATGGC---------AGGTTACGAGACTGCTGAATGCCAACCACTCCA--CAA-----TAAATCGTTCTTGG--C-CAAGACTACATAATACTTGCACGACCGCGGATTTATCATGCAG-T-GGGTGT-------CCACGA
gi|4 : TACTGAAACGAAAAAGAAGCG--C-------ATAGGCATT-TT-T---GG-ACAATATTTT----A----AT--GGGTTA----ATTAGAATACATAAT----AATTTCTATT-TTGCCTACTAGGTGC---T--------TGAACAACAATGTCA-AAGAAC-ATTAATAGTAACGGTTGACTAGCGCTTT----AGAAACAATA-TCACG---CC-ACGCACGAAAACAATATGTAT-TCGTGCACAGTTACCCACGTGACAATTTAC-AAAAAAATTAC----AAAATTGTTCACATTTTAAAGTATTCAG-----TAACTAACAT---C-TTACACA----T-ATGGAGCACTATGGATATATTAAAATGTGAAAAAAAT--------------CAGGATACCAC---GGCTACGCCAAACTT----AACGTGGTCGTG-----C-CGTGACGAGCTGATTTAAGGAATGATGTAA-TGGCAGGTCATAAGttaga
gi|5 : aACTGAAACAAACAAAAAACG--T-------ACAGGTG--------------CAATAGTTT-T--A----AT--GGGTTA--C-ATCA-A-CAAATAAT----AATTTCTATT-T-GCCTACTGAGTGT---T--------TGACCAAC-----------------TA---GTAACG--TGACTATAGCTAT----TGAAA-AATGTCCACG---CT-AAGCACGAAAATCACATTTTCATCGTGCA--GTTACCCACATGATAATTTAC-A---------C----AC--CAGCTCATATGTTAAAACACTTTCC-----AACTATCAC---C-TTACACATTGGT-ACGGATAACTTTGAATGTATTG-----------AAATGTGGAAAAAAAAGAC--GA---CAC---GGTTACTCCAAACTG----AAGGTGAAC--------A-CTTT------TGCTTCAGGTAATTGCACAA-
gi|6 : aTACTGGCACGGCCGCAGAAAGATCACGT-GGT-GAACGTCGACGTTTAACGACGTCTGGGCAAGCCCGT-----GCCATACGTCTAGTTCAACTACGAAATCGGTTCAAAACTGCCGCCGAGAC-GGCTGTAATCAC-GCCTGGTAC------ATGCAACAACAGAATACATCTAGAAACTGTGAGGAACCGATTGGGTGAAGTTGGCATCAGAGCC--TTT---AGATCAT--T-CGTTAGAACACCATAAACGCCGTGAAGAAGACG-----A------GATGGTCACTGGGGACGCT--GAC--TAGACTG---TGGATTTAAGTGATAGTGTacacat
gi|7 : cATACTGGCACGACCGCTGATATATCACGT-A-TTGGGCATCAACGCGTAACGACGCCCAGCCAATACCGTCTTGTACCATGCGACAAGTTCACCTACGAAATCGGTT--------------AGGCCGACTTTAAACAC-ATCTGGTAC------ACACGATAAAAGGATAAATCCTGATGCTTTGAGAGACCGATAGAACGAAATTGGCATTATA-----TTATACAGATAATA-T--GTTGGAA-AGCACTTATACCACGTAGATGTCAAGTATATGTAGAGATTG--ACT--------T--GGT--T-G-------TGAATTTTAGTGATAGTGTTG
gi|8 : tAAA-TA----TACGTGAAGG-GCTATTA-CGTTA----CTGCTTCAATGAATGGCGTAAGC-GCAGGTTGCAAGACTGATGAATGCCTACCATTCCG--CAA-----TAAGGCGAC-TCAGATC-AAA----ACGTTAT-TTTACACGACTATTGAAAGATCATGT-A-----ATGT---------ACGACGCCAATGCAGAACC-----------TACGTCTAGTTAACCTACCCAATCGGTTCCAGTCTGCCATTGAAGC-AGCTCTAAACAT-CCCCGGTACATGTGTATATGGCAACAG---ACA-------ACTATGGGAAACCGATT
gi|9 : aagagataGAAACGGAAAAGAAACG--C-------ATATATGTG-TTGT---GT-GCGGTATTTT-T--A----AT--GAGTT--TC-ATCA-----AACAAA----AAT--------------AATAAA-----------------ATCAAAATTAT-A-AAATAT-GTTC---GTAACGATTAATTAACCTTGTAGTATAAAACAATA-TTATGTTACT-GAGTACGAACACAATATTTTC-TTGTGTACAGTCACCTACGTGAC-ATTTACAA---------CAATAAA--TGATTCACA---CATAGTGT----C----TAACAGTCAT---T-TTACACA----T-ACGCTCCATTTTGAATACA--------------A-----------------T--GA---CAC---G
blockSeqs : A GG TCATAAA G TTAA T GTTATTGC TT AG T G A TATT T A CC AGT ATAAACTT ACA G AATA AGTA TCC GTTA G T A T A AAAAAATTA AATA AA T CCCTT T GACC TTGG T TAAAATGTGAAAAAAATCAGGATAC . TACAAC A GCTATTA ACGAG G G GTAATG C TT . T AT . T T T T GGTGAACGTCGACGTTTA CTTGT T TG T A CG CG . ATGTGT T A ATCTAGAA T C A CCATTTA A A ATAT G C A T G AGATGGTCACTGGGGACGCTGACTAGACTG
blockSeqs : T . . . GT . TTGA . AA . . A . C . CC . . CAA . A . GA A . A . C . . . . T TCCCA A CT . . TGAAATGTGGAAAAAAAAGACGA . CTT T CGAA G T G GTAAGC C . . C . . G T G T ATTGGGCATCAACGCGTA . C GA C A TG G . . C A ATCCTGAT T G C GCCTTT A A TC A . A A G ATGTGTCACATGGGATAATGACTTTAA
blockSeqs : G . . . T . TTT . A . . A . C . TC . . AA . A . CA G . G . T . . . . T CCCT T C . . GTACC . CTG A TTA A G T TA . . . . . . . G A A AGTGGGTGTCC . C GA C T . A . . C G A A A T TTATAC . . AT A . T T G AGTATATGTAGAGATTGACTTGGTTG
blockSeqs : G . . . T . TTA . G . . C . G . CC . . TA . A . AC G . G . T . . . . T CCCT A A . . TAAGA . TG A TGC A G G . G T T AGTGGGCG . A CC . . . . . . T . . T
blockSeqs : G . . . T . GTA . G . . C . C . TC . . GA . C . TC G . T . T . . . . T CCCA A T . . ATGA . TA . A . G . T T A AATGT
blockSeqs : G . . . T . TTA . G . . A . T . TC . . AC . A . TC G . G . C . . . . T CCCT A C . .
blockSeqs : A . . . T . CA . A . . T . T . CC . . AG . A . CC G . T . C . . . . . CCAT T C . .
blockSeqs : G . . . T . TA . A . . A . C . CC . . AA . C . TC . . C . T . . . . . CAGT T T . .
blockSeqs : . . . . T . TA . T . . A . C . T . . A . . . TT . . T . . . . . . . TTCC A
blockSeqs : . . . T . A . . . . . . . . A . . . C . . . . . CT
blockSeqs : . . . A . . . . . . . . .
blockSeqs : . . .
blockSeqCons : G** CCCT***** TAAGTACGA****************************** *** CTG**** AGTGGGCGTCGACGT***** **
originalCons : TACTGAAACGAAAAAGAAACG--C-------ATAGGTGTT-TT-T---GT-GCAATATTTT-TT-A----AT--GGGTTA-GC-ATCA-AACAAATAAT----AATTTCTATT-TTGCCTATTGAGTGT---T--------TGACCGACAATAT-A-AAGTAC-ATTA---GTAACGGTTGACTAGCGCTAT----TGAAACAATA-CCACG---CT-AAGTACGAAAACAANATTTCC-TCGTGCACAGTCACCCACGTGACAATTTAC-A---------C----AA--TGGTTCACATTTTAAAACATTCCCC----TAACAATCAT---C-TTACACA----T-ACGGACCACTTTGAATACAT-------------AAAC--------------C--GA---CAC---GGCTACGCCAAA-TN----AACGTGAACGCG-----A-CGTTA----CTGCTTCAAAGAATGGCGTAA-C-GCAGGTCGCAAGACTGCTGAATGCCAACCATTCCA--CAA-----TAAGTCGACCTCGG--C-AAAGACTACGTAATACTNGCACGACCGCGGANAGATCACGT-G-T-GGGCGT-------TAACGACGCCCAGGCAAGACCGT-----ACCATACGTCTAGTTCACCTACCGAATCGGTTCCAAACTGCCGTCGAGGC-GGCTCTAAACAC-GCCTGGTAC------ACACGACAACAGAATACATCCAGATACTGTGAGAAACCGATTGCGCGAAGTTGGCATTAGAGCC--TTA---AGATCATA-TACGTTGGAA-ACCATNAACACCACGTAGAAGACA-----ATG----GATNGTCACT--------T--GAT--T-GACT----TGGATTTTAGTGATAGTGTTG
finalCons : TACTGAAACGAAAAAGAAACG--C-------ATAGGTGTT-TT-T---GT-GCAATATTTT-TT-A----AT--GGGTTG--C-ATCA-AACAAATAAT----AATTTCTATT-TTGCCTATTGAGTGT---T--------TGACCGACAATAT-A-AAGTAC-ATTA---GTAACGGTTGACTAGCGCTAT----TGAAACAATA-CCACG---CT-AAGTACGAAAACAANATTTCC-TCGTGCACAGTCACCCACGTGACAATTTAC-A---------C----AA--TGGTTCACATTTTAAAACATTCCCT-----AACAATCAT---C-TTACACA----T-ACGGACCACTTTGAATACATTAAGTACGA------------------------------CAC---GGCTACGCCAAACTG----AACGTGAACGCG-----A-CGTTA----CTGCTTCAAAGAATGGCGTAA-C-GCAGGTCGCAAGACTGCTGAATGCCAACCATTCCA--CAA-----TAAGTCGACCTCGG--C-AAAGACTACGTAATACTNGCACGACCGCGGANAGATCACGTAGTGGGCGTCGACGT-----ACGACGCCCAGGCAAGACCGT-----ACCATACGTCTAGTTCACCTACCGAATCGGTTCCAAACTGCCGT--AGGC-GGCTCTAAACAC-GCCTGGTAC------ACACGACAACAGAATACATCCAGATACTGTGAGAAACCGATTGCGCGAAGTTGGCATTAGAGCC--TTA---AGATCATA-TACGTTGGAA-ACCATNAACACCACGTAGAAGACA-----ATG----GATNGTCACT--------T--GAT--T-GACT----TGGATTTTAGTGATAGTGTTG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AACCACTAAATTGTTCATATTTTTAAATATTTCCTAATAACCTTTAACACAAACGGGCCAGTTTAAGTACATATAAAATACGTGAAAAACGATGCCACGGTCACGTAAAATAAACGTAATCCTG
Unaligned ( gi|17 ): ACTTTACACGTACAGACTAATTTCAGTATATTGAAATGCGGAAAAACAATGTCACAACTATCCCAAAATGAATGT
Alignments
lowQualScore : 1111111 111111111 11111111 111111111 11111 99999999999999999999999999 111 222222222 11111 3333333 11 22222 11 1 66666666666666666 22222 33333333 222222 22222222 22222222222 22222 1 666666666666666666666666666666666666666666666666
lowQualScore : 2 55 1111111 3 77777 3 444444444 44 3 3 3 6666 2 3 0 666 33333333 0 5555 4 7777 0 8888 444 8888 4 1 4 5 0 00 3 444444444 7777 55 5 99999 1 00000 9999 4 99999999999999999999999999 8 5 000 6 444444444 55555 2 0 2 5555555 0 2 33 55555 6 0 33 0 8 1 5 1 11111111111111111 00000 1 77 8 1 44444444 8 333333 1 3 11111111 1 2 1 0 55555555555 3 3 00000 1 0 1 1 2 777777777777777777777777777777777777777777777777
lowQualScore : . .. ....... . ..... . ......... .. . . . .... . . . ... ........ . .... . .... . .... ... .... . . . . . .. . ......... .... .. . ..... . ..... .... . .......................... . . ... . ......... ..... . . . ....... . . .. ..... . . .. . . . . . ................. ..... . .. . . ........ . ...... . . ........ . . . . ........... . . ..... . . . . . ................................................
lowQualScore : 3 00 8888888 3 11111 1 555555555 66 7 3 2 5555 3 3 8 444 22222222 5 4444 0 7777 7 5555 555 6666 0 0 0 5 7 66 6 555555555 7777 00 7 11111 4 33333 4444 4 11111111111111111111111111 0 0 888 0 555555555 88888 5 3 5 1111111 2 5 88 00000 5 2 88 0 8 0 2 0 11111111111111111 00000 4 88 2 0 66666666 0 000000 4 8 88888888 4 5 2 2 88888888888 2 2 00000 2 0 0 2 5 555555555555555555555555555555555555555555555555
consensus : TACTGAAACGAAAAAGAAACG--C-------ATAGGTGTT-TT-T---GT-GCAATATTTT-TT-A----AT--GGGTTGCATCA-AACAAATAAT----AATTTCTATT-TTGCCTATTGAGTGT---T--------TGACCGACAATAT-A-AAGTAC-ATTA---GTAACGGTTGACTAGCGCTAT----TGAAACAATA-CCACG---CT-AAGTACGAAAACAANATTTCC-TCGTGCACAGTCACCCACGTGACAATTTAC-A---------C----AA--TGGTTCACATTTTAAAACATTCCC-----TAACAATCAT---C-TTACACA----T-ACGGACCACTTTGAATACATTAA---GT-----------ACGA---CACGGC-TACGCCAAACTNAACGTGAACGCG-----A-CGTTA----CTGCTTCAAAGAATGGCGTAA-C-GCAGGTCGCAAGACTGCTGAATGCCAACCATTCCA--CAA-----TAAGTCGACCTCGG--C-AAAGACTACGTAATACTNGCACGACCGCGGANAGATCACGTAGTGGGCGTC-ACGT-TAACGACGCCCAGGCAAGACCGT-----ACCATACGTCTAGTTCACCTACCGAATCGGTTCCAAACTGCCGTCGAGGC-GGCTCTAAACAC-GCCTGGTAC------ACACGACAACAGAATACATCCAGATACTGTGAGAAACCGATTGCGCGAAGTTGGCATTAGAGCC--TTA---AGATCATA-TACGTTGGAA-ACCATNAACACCACGTAGAAGACA-----ATG----GATNGTCACT--------T--GAT--T-GACT----TGGATTTTAGTGATAGTGTTG
Reference ( family-107 ) : TACTGAAACGAAAAAGAAACG--C-------ATAGGTGTT-TT-T---GT-GCAATATTTT-TT-A----AT--GGGTTGCATCA-AACAAATAAT----AATTTCTATT-TTGCCTATTGAGTGT---T--------TGACCGACAATAT-A-AAGTAC-ATTA---GTAACGGTTGACTAGCGCTAT----TGAAACAATA-CCACG---CT-AAGTACGAAAACAANATTTCC-TCGTGCACAGTCACCCACGTGACAATTTAC-A---------C----AA--TGGTTCACATTTTAAAACATTCCC-----TAACAATCAT---C-TTACACA----T-ACGGACCACTTTGAATACATTAA---GT-----------ACGA---CACGGC-TACGCCAAACTGAACGTGAACGCG-----A-CGTTA----CTGCTTCAAAGAATGGCGTAA-C-GCAGGTCGCAAGACTGCTGAATGCCAACCATTCCA--CAA-----TAAGTCGACCTCGG--C-AAAGACTACGTAATACTNGCACGACCGCGGANAGATCACGTAGTGGGCGTCGACGT---ACGACGCCCAGGCAAGACCGT-----ACCATACGTCTAGTTCACCTACCGAATCGGTTCCAAACTGCCGT--AGGC-GGCTCTAAACAC-GCCTGGTAC------ACACGACAACAGAATACATCCAGATACTGTGAGAAACCGATTGCGCGAAGTTGGCATTAGAGCC--TTA---AGATCATA-TACGTTGGAA-ACCATNAACACCACGTAGAAGACA-----ATG----GATNGTCACT--------T--GAT--T-GACT----TGGATTTTAGTGATAGTGTTG
gi|1 : TACTGAAACAAGAAAGAAATG--C-------AGAGGTATT-TT-A---GT-GCAATATTTT-TT-A----AT--ATTATGCATCA-AATAAATAAT----AATTTCTATT-TTGTCTATTGAGTGT---T--------TGACCAATAATAT-A-AAGTAC-ATTA---GTAACAGTTGACTGGAGCTAT----TGAAACAATA-CCATG---AT-AAGTTTGAAAACAAGATTTTC-TAGTGCACAGTCATACACATAACAATTTAC-A---------C----AA--TGGTGCACATGTTAAAACATTTCCCTAGTTAACAATCAT---T-TTACACA----T-ACAGACCACTTAGAATACATAAA---CC-----------ACGC---CTTGGC-TATGACAAAGTTAACTTGAGCGCG-----A-CGTTA----CT-CTTCAAAGAATTGTGCCATT-GCAGGTCGCAAGACAGTTGAATGCCAACCATTCCA--CAATACAGTAAGTAAACCACTG--CAAAAGACTATGCAATACTGGCAC-ACCATGGACAGATCACTTA-----------------ACAACACCCAGGCAAGACTGT-----ACCATGCGTCTAGATTACCTATTGAATCGGTAACAAACTACGGTTCAGGC-AGCTCTAAGCACGGCCT-ATGC------GCAGAACAACAGAATACATCCAGATACTGTGGGAAACCAATAGCGCAAGGTTGACATTAAAGCC--CTG---AGATCATAGTACTTTGGTA-TCCATTAACACCACACA-AAAACA-----ATG----GATAGTCACT--------T--GAT--T-GAC-----TGGATTTTAGTGATAGTGTTG
gi|10 : ACTTAAATAAAAACTAAACA--T-------ACAGAGGTT-TT-T---GT-GCAATATT------A----A----GGTTACATCA-AACATGCAAT----AAATATTATCATTGT---TTGAATAT---T----------------AATAT-A-AAGTATGATT----GTAATATTTCAGTAGCATTTT----TGAAACTGTA-GAACA---CT-TAGCACGAAAATAATATTTCC-TTGTACACAGTTA-CTACATGGCTATTTAC-A---------C----AG--TGGTTCATG-TTTAAAACATTCCC-----TAACTATCA
gi|11 : T-TT-T---GTTACAGTATTTG-TTGA----AT--GGGTT-CACCA-AACAAATAAT----AATTTCTATT-TTGCCTATTGGGTGT---TATAAACTTTGGCCGACAGTAT-T-AACTGC-ACTA---GTAACGGTTGATTGGCGCTAT----TGATACACTA-CAACG---CT-TAGCAAAAAAACAAAATTTCC-TCGTGCTCAGTAACCCCGGTGACTATTTAC-A---------C----AA--CGGTTCACA-TTTAAAACAATCCC-----TAACct
gi|12 : AAGAAATG--C-------ATAGGTGTTGTT-T---GT-GCAATATCTT-TT-T----AT--CGTCTGCATCA-AAAAAATAGT----AATTGCTA-T-TTGGATATTGAGTGT---T--------TGGCTGACAATAC-ACAAGTA
gi|12 : ACAATA-C-AC-------AAGTAGGAAAACCAGATTACT-TTGTGCACATTCACCCACATAACATTTGAC-A---------C----AA--TGGTTCACATTTTAAAACATTCCC-----TTACAA-CAT---CTTTACAAA----T-ATGGACCATTTTGAAggaaaaccagattactttgtgcacattcacccacataacatttgacacaatggttcacattttaaaacattcccttacaacatctttacaaatatggaccattttgaa
gi|13 : aagaaatgcataggtgttgtttgtgcaatatctttttatcgtctgcatcaaaaaaatagtaattgctatttggatattgagtgtttggctgAATAAT----AGTTC-------TGCCTATTGAGTGT---T--------TGACAGACAATAT-G-AAGTAC-AAAA---GTAATGGTTGACTAGCACTAC----TGAAACTATG-ACAT----CTGAAGTACAGAAACAAGATTTCC-T----------------CGTGACATTTGGC-A---------C----AA--TGGTTCACA-TTTAAAATATTCCC-----AAACTGTCAC---C-TTGTGCA----T-GTGGTATACTTTGAATATATTGA---
gi|14 : TACTTAAACTAAAAAGAAACGGGT-------ATATGTGTT-TT-----GT-TCAATAAATT-TT-A----CT--GGAA-GCTTTA-ACCAATCAGT----A-TTTGTGTT-TTATCTGTTCAGTGTAGTT--------TGACTGGCCATAT-A-CAGTAC-ATTA---GTAACGGTTTACTAGCTTTAT----TGAAACAATA-TCAaatgtgaaaaaatg
gi|16 : TACTGAAACGAACAAGAAGGA--C-------AAATGTAGT-TT-T---GT-GCAATA-TTT-GT-A----AT--GGGTTAAATCA-ACCAAATAAT----AAT
gi|18 : TGACAATTTAC-A---------G----AA--TGGTTCACATTGTAAGTCAGTCCC-----TAACAGTCATGACC-TTACACA----T-ACa
gi|19 : T-T---GT-GCAATATGTT-C--A----AT--GGGTTCTATCA-AACAAATGAT----ACATTCTATT-TTGCCTATTGGGa
gi|2 : aTACCGAAACGAAAAAGGAACG--C-------ATGGGTATA-TT-T---GT-GCAATATTCCGTT-ATTGCATTTGGGTTGCTTCA-ATCACATGATTATTAATTTTTATA-TTGTCTATTGACTGT---T--------TGACCGA--ACAT-A---GTAT-ATTC---GTAACGATTGACTTGTACTAT----TCAAACAATA-TCATG---TT-AAGTACGAAAACAATATTTCC-TTTCGCACAATCCCCTACGTGGCATTTTAC-A---------C----AA--TGGTTCACATTTTGTAT--TTCCC-----AAACAATCTT---A-TAACACA----TTACTGACCATTACGAA-ACGT------GT-----------AC-----CACGGC-TGCGCCAAA-TGAACGAGA-CGTT-----A-CATTG----CTGCTTCAAAG-------TA-----CAGGCTGCATGACTGCTAAATGCCAAC--TTCTATTCAA-----TACGTCGACTTTGG--C-AAATACTGCGTAATAATTGCACGACCGCTGATAGATTACGTAGTGGGCG-------------ACTTTCAAGTTAGACCGT-----ATTATATCTCTGGTGTACCTTCTGAATCGGTTTCAAACTGCCGT----------TCTAAACAC-GCGTGGTAC------ACATAAAAACAGAATAT----------TGGAAGAAACCGATTGCACGTAATTGACATAAGA-CCATTTA---AG--C-TA-TATGTTGGGA-ACCGTAAACACCATGTAGAAGACA-----ATG-------TGTCACA--------TGGGATAAT-GACTTTAATGGATTTTAGTGATATTGT
gi|20 : taTACTGAAACGAAGAAGAAACG--C-------ACAGGTATT-TT-T---GT-GCAAT
gi|3 : ataACTGAAAC-AACTTGAAACG--CTCATAAAGTAGGAACT-TT-TTAAGT-GAAATTTTTG-TT-A----AT--GTGTTGCATCA-AACAAATAAT----AATTTTTATT-ACATCTGTTGAGTGT---T--------T-ACCGACAATAT-A-GAGTAC-ATCA---GTAACGGTTGCCTAGCGCTAT----T------ATA-CCACG---TT-AAGTATGAAAACAAGATTCCC-TTGTGCACATTCATCTACGTGATATTTTAC-A---------C----AG--TTATTTACATTTGAAAACATTCCA-----TAACAATCGT---T-TTATACA----T--CAGACCACTTTGAATACCTTAA---G---------------A---CATGAAATAC----AAC--AGCATGAACGCG-----AACGTTA----CTTCTTCAAAGAATGGC---------AGGTTACGAGACTGCTGAATGCCAACCACTCCA--CAA-----TAAATCGTTCTTGG--C-CAAGACTACATAATACTTGCACGACCGCGGATTTATCATGCAGTGGGTGTCCACG
gi|4 : TACTGAAACGAAAAAGAAGCG--C-------ATAGGCATT-TT-T---GG-ACAATATTTT----A----AT--GGGTTA-ATTAGAATACATAAT----AATTTCTATT-TTGCCTACTAGGTGC---T--------TGAACAACAATGTCA-AAGAAC-ATTAATAGTAACGGTTGACTAGCGCTTT----AGAAACAATA-TCACG---CC-ACGCACGAAAACAATATGTAT-TCGTGCACAGTTACCCACGTGACAATTTAC-AAAAAAATTAC----AAAATTGTTCACATTTTAAAGTATTCAG-----TAACTAACAT---C-TTACACA----T-ATGGAGCACTATGGATATATTAAAATGTGAAAAAAATC-AGGATACCACGGC-TACGCCAAACTTAACGTGGTCGTG-----C-CGTGACGAGCTGATTTAAGGAATGATGTAA-TGGCAGGTCATAAGattaga
gi|5 : aACTGAAACAAACAAAAAACG--T-------ACAGGTG--------------CAATAGTTT-T--A----AT--GGGTTACATCA-A-CAAATAAT----AATTTCTATT-T-GCCTACTGAGTGT---T--------TGACCAAC-----------------TA---GTAACG--TGACTATAGCTAT----TGAAA-AATGTCCACG---CT-AAGCACGAAAATCACATTTTCATCGTGCA--GTTACCCACATGATAATTTAC-A---------C----AC--CAGCTCATATGTTAAAACACTTTC-----CAACTATCAC---C-TTACACATTGGT-ACGGATAACTTTGAATGTATTGAAATGTGGAAAAAAAAGACGA---CACGGT-TACTCCAAACTGAAGGTGAAC--------A-CTTT------TGCTTCAGGTAATTGCACAA-
gi|6 : aTACTGGCACGGCCGCAGAAAGATCACGTGGTGAACGTCGACGTTTAACGACGTCTGGGCAAGCCCGT-----GCCATACGTCTAGTTCAACTACGAAATCGGTTCAAAACTGCCGCCGAGAC-GGCTGTAATCAC-GCCTGGTAC------ATGCAACAACAGAATACATCTAGAAACTGTGAGGAACCGATTGGGTGAAGTTGGCATCAGAGCC--TTT---AGATCAT--T-CGTTAGAACACCATAAACGCCGTGAAGAAGACG-----A------GATGGTCACTGGGGACGCT--GAC--TAGACTG---TGGATTTAAGTGATAGTGTacacat
gi|7 : cATACTGGCACGACCGCTGATATATCACGTATTGGGCATCAACGCGTAACGACGCCCAGCCAATACCGTCTTGTACCATGCGACAAGTTCACCTACGAAATCGGTT--------------AGGCCGACTTTAAACAC-ATCTGGTAC------ACACGATAAAAGGATAAATCCTGATGCTTTGAGAGACCGATAGAACGAAATTGGCATTATA-----TTATACAGATAATA-T--GTTGGAA-AGCACTTATACCACGTAGATGTCAAGTATATGTAGAGATTG--ACT--------T--GGT--T-G-------TGAATTTTAGTGATAGTGTTG
gi|8 : tACGTGAAGG-GCTATTA-CGTTA----CTGCTTCAATGAATGGCGTAAGC-GCAGGTTGCAAGACTGATGAATGCCTACCATTCCG--CAA-----TAAGGCGA-CTCAGATC-AAA----ACGTTAT-TTTACACGACTATTGAAAGATCATGTA----------ATGT---ACGACGCCAATGCAGAACC-----------TACGTCTAGTTAACCTACCCAATCGGTTCCAGTCTGCCATTGAAGC-AGCTCTAAACAT-CCCCGGTACATGTGTATATGGCAACAG---ACA-------ACTATGGGAAACCGATT
gi|9 : aagagataaaatatGAAACGGAAAAGAAACG--C-------ATATATGTG-TTGT---GT-GCGGTATTTT-T--A----AT--GAGTTTCATCA-----AACAAA----AAT--------------AATAAA-----------------ATCAAAATTAT-A-AAATAT-GTTC---GTAACGATTAATTAACCTTGTAGTATAAAACAATA-TTATGTTACT-GAGTACGAACACAATATTTTC-TTGTGTACAGTCACCTACGTGAC-ATTTACAA---------CAATAAA--TGATTCACAC------ATAGTGTC-----TAACAGTCAT---T-TTACACA----T-ACGCTCCATTTTGAATACA--------------------ATGA---CACG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AACCACTAAATTGTTCATATTTTTAAATATTTCCTAATAACCTTTAACACAAACGGGCCAGTTTAAGTACATATAAAATACGTGAAAAACGATGCCACGGTCACGTAAAATAAACGTAATCCTG
Unaligned ( gi|17 ): ACTTTACACGTACAGACTAATTTCAGTATATTGAAATGCGGAAAAACAATGTCACAACTATCCCAAAATGAATGT