lowQualScore : 333 111 11111 333 1 1
lowQualScore : 777 0 2 444 5 333 77777 4 7 222 3 44 9 44 5 6 2 5 77 2 33 4 666 444 7 777777 5555 33 1 7 444 5 3 6
lowQualScore : ... . . ... . ... ..... . . ... . .. . .. . . . . .. . .. . ... ... . ...... .... .. . . ... . . .
lowQualScore : 333 8 0 000 2 555 99999 5 9 777 3 66 6 22 6 6 5 2 33 7 77 4 111 777 6 777777 7777 44 3 2 444 1 9 0
consensus : TACCATCA---TCATCGTCATTG---TCATCATCATCGTNGTCATT-ATCATCANCANCA-CATTGTT-T--TCATCATCATCATGGTTATCGTCA--TTTGCTTAGACGTT-CTTAACATCCCT--TG-T--TGTT--TT---TTTTTATTC------TACAT----AAAA--GTCGCTCTAGATCCAATACTACGTC---TTTCCTTCAACCAACAACG
Reference ( gi|4 ) : TATCATCACTTTCATCATCATCG---TCATTATCATTACTGTCACT-ATCATCAGCAGCAGCTTTGTT-T--TCATCATCATCATAGTTATCGTCA--TTTACTTGGACGTT-CTAAACATCCCT--TG-T--TGTT--TT---TTTTAATTC------TACAT----AAAA--GTCACTCTAGATCCAATACTACATC---TTTCTTTTAACCGACAACG
gi|18 : TACCATCAGTTTCATCCTCATTA---TCGTCGTCATTATTATTATTAATCATCATCAGAAGTACCGTC-A--TCATTAT-ATTTTAGTTA
gi|7 : tataaaATCATCA---TCATCATCATTGTTTTCATCATCATCATGGTCAC--GTCATTTGCA
gi|19 : atcatcaccgtaCACCAC---CATGGTGATTG---CCATTATTATCACAGTTATT-AACAGCAGCAGCAGTTTTATTATTGTCACCATTATCATCGTTATtagacattcttaacatcccttgttttgttgttttattctacacaaaagtcgctctagatccaattctacgtctttccttcaaccaaaa
gi|8 : aaCATCATCA---TCATCATCATTGTTTTCA
gi|5 : ---TCATAATCATTTTTTT---T-ATCATCATCATCA---TTGTT-T--TCATCACCATCATGGTTATCGTCA--ATTGTTTAGACGTT-CTTAATATCCCT--TGTT--TGTTTGTT---TTTTTATCA------CACAT----AAAA--GTCGCTCTAGATCCAAAACTACGCC---TATCCTTCAACCAACAtaaccatcatggttatcgtcattggcttagccattcctaaaatcccttcttttgttttttttattctacatgtacataaccgttgctctagatccaatactacgtcttttctttaaccaacaac
gi|7 : aATCATCACCGTAATC-ATCATCATCATCA---TTGTT-T--TCATCATCATCATGGTCA-CGTCA--TTTGCATAGACATT-CTTAACATCCCT--TG-T--TTTG--TT---GTTTTATTC------TACAC----AAAA--GTCGCTCTAGATCCAATTCTACGTC---TTTCCTTCAACCA
gi|8 : -ATCATCATCATCATCATTGTT-T--TCATAACCATCATGGTTATCGTCA--TTGGCTTAGCCATTCCTAAA-ATCCCTTCTT-T--TGTT--TT---TTTT-ATTC------TACATGTACATAACCGTTGCTCTAGATCCAATACTACGTC---TTTTCTTTAACCAACAACaa
gi|3 : cTCATCAGCA------TTATT-T--TCATCAT------GGTTATCGTCA--TTTGCTTAGACGTT-CTTAATATCCCT--TG-T--TTTT--TTGTGTTTTTATTC------TAGAT----AAAA--GTCGCTTTAGATCCAATACTTCGTC---TTTCCTTCAACCAACAATG
gi|1 : aannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggCACCAACAGCATCATTGTT-T--TCATCATCAACATAGTTATCGTCA--TTTGCTTAGACGTT-CTCAACATCCCT--TG-T--TGTT--TT---TT---ATTG------TACAT-------A--TTCACTCTAGATCTAATACTACGTC---TTTCCTTTAGCCAACAAC
gi|12 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcagcagcagcaccaacagTTGTT-T--TCATCATCATTAGGGTTATCGTCA--TTTGCTTAGACGTT-CTTAACATCCCT--TG-T--TGTT--AA---TTTT-ATTC------CACAT----AAAA--TGCGCTCTAGATTCAATACTACGTA---TTTCCCTCAACCAACAACat
gi|11 : catcaTTGTT-T--TCATCACCATCATGGTTATCGTCA--TTTGCTTAGACGTT-TTTAACATCCCTTCTT-T--TGTA--TT---TTTTTATTCTACATGTACAT----AAAA--GTCGCTCTAAATCCAATACTACGTC---TTTCCATTAACa
gi|17 : tcatcaTGTT-T--GTATCATCATCATGGTTATCGGCA--TTTGCTTACATGTT-CTTAACATaaa
gi|20 : ataaccttttaacatcattaaGTT-T--TCATCACCATCAT------CATGG--TT------GACGTT-TTTAACATCCCT--TG-T--T-TT--TT---T----ATTC------TACtttgcacgtctgtgacttttttt
gi|14 : TT-T--TCATCATCATCCTGGTTATCGTCA--TTTACTTAGACGTT-CCTATCATCCAT--TG-----ATT--TT---T----ATTT------T--AT----AAAA--GTCGCTCTGGATCCAATACTACGTC---TTTCCTTAAACCAACAAC
gi|13 : TCATCATCAT---TATCCTCAATTTTGCTAAGACGTT-CTTAACATCCCA--TG-TATTGTA--TT---TTT--ATTC------TACAT----AAAT--GTCATTCTAGATCCAATACTACATC---TTTCCTTCAACCAACAACa
gi|16 : TTATCGTCA--TTTGCTTAGGCGTT-CTTATCATCC-----A-T--TGTT--TT---TTTTA-TTC------TACAT----AAAA--GTCGATCTAGATCCAATACTACGTC---TTTCCTCCAACCa
gi|15 : ATCGTCA--TTTGCTTAGACGTT-CTTAACATCCCT--TG-T--TTTG--TT---TTTTA-TAC------TACAT----AAAA--GGCGTTCTAGATCCAATACTACGTC---TTTTCTTCAACCAACTACatca
gi|6 : taTTGCTTACACGTT-TTTAACATACCT--TG-T--TTTG--TT---TTTTTATTC------TACAC----AAAA--GTCACTCTAGATCCAATACTACGTT---TTTCTTTCAACCAAC
gi|9 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTGCTTAGACATT-CTTAACATACCT--TG-T--TGTG--TT---TTTTTATTC------TACAT----AAAA--GTCAAATTGGATCCAATACTACGTC---TTTCCTTCAACCA
gi|2 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-CTTAACATCCCT--TG-T--T-----TT---TTTT-----------TACAT----AAA---GCCGCTCCAGATCAAATACTACGTC---TTTCCTTCAACCAACAACG
gi|22 : accattaccacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgcatagaataT----AAAA--GTCGCTCTAGATCCAAAACTACGCC---TTTCCTTCAACCAACAACG
gi|21 : A--GTCACTCTAGATCCAATGCTAC-TCAAATTTCCTTCAACCAACAACG
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): ATATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
Alignments
lowQualScore : 777 1 333333 22222222222
lowQualScore : 000 0 2 55 6 1 111111 555 33 33 22 44444444444 777777 5555 33 444
lowQualScore : ... . . .. . . ...... ... .. .. .. ........... ...... .... .. ...
lowQualScore : 000 5 0 22 7 0 222222 444 99 44 77 66666666666 222222 3333 22 111
consensus : TACCATCANTTTCATCNTCATCGTCGTCATCATCATTATCATT-ATCATCATCAGCA-CATTGTTTTCATCA---TCATCATGGTTATCGTCA--TTTGCTTAGACGTTCTTAACATCCCT--TG-TTGT-T--TT---TTTTTATTC------TACAT----AAAA--GTCGCTCTAGATCCAATACTACGTC---TTTCCTTCAACCAACAACG
Reference ( family-1020 ) : TACCATCA---TCATCGTCATTGTCATCATCATCGTNGTCATT-ATCATCANCANCA-CATTGTTTTCATCA---TCATCATGGTTATCGTCA--TTTGCTTAGACGTTCTTAACATCCCT--TG-TTGT-T--TT---TTTTTATTC------TACAT----AAAA--GTCGCTCTAGATCCAATACTACGTC---TTTCCTTCAACCAACAACG
gi|1 : CACCAACAGCATCATTGTTTTCATCA---TCAACATAGTTATCGTCA--TTTGCTTAGACGTTCTCAACATCCCT--TG-TTG------T---TTTTTATTG------TACAT-------A--TTCACTCTAGATCTAATACTACGTC---TTTCCTTTAGCCAACAAC
gi|11 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcagcagcagcaccaacag-CATTGTTTTCATCA---CCATCATGGTTATCGTCA--TTTGCTTAGACGTTTTTAACATCCCTTCTT-TTGT-A--TT---TTTTTATTCTACATGTACAT----AAAA--GTCGCTCTAAATCCAATACTACGTC---TTTCCATTAACAAAat
gi|12 : tcat-CATTGTTTTCATCA---TCATTAGGGTTATCGTCA--TTTGCTTAGACGTTCTTAACATCCCT--TG-TTG--T--TA---ATTTTATTC------CACAT----AAAA--TGCGCTCTAGATTCAATACTACGTA---TTTCCCTCAACCAACAAC
gi|13 : catTCA---TCATCAT---TATCCTCAATTTTGCTAAGACGTTCTTAACATCCCA--TG--TAT-T--GTA--TTTTTATTC------TACAT----AAAT--GTCATTCTAGATCCAATACTACATC---TTTCCTTCAACCAACAACa
gi|14 : TTTTCATCA---TCATCCTGGTTATCGTCA--TTTACTTAGACGTTCCTATCATCCAT--TG----------A---TTTTTATTT------T--AT----AAAA--GTCGCTCTGGATCCAATACTACGTC---TTTCCTTAAACCAACAACa
gi|15 : ATCGTCA--TTTGCTTAGACGTTCTTAACATCCCT--TG-TT-T-T--GT---TTTTTATAC------TACAT----AAAA--GGCGTTCTAGATCCAATACTACGTC---TTTTCTTCAACCAACTACa
gi|16 : taTTATCGTCA--TTTGCTTAGGCGTTCTTATCATCCAT--TG-TT-------T---TTTTTATTC------TACAT----AAAA--GTCGATCTAGATCCAATACTACGTC---TTTCCTCCAACCATCA
gi|17 : TT-AACATCATTAA------TGTTTGTATCA---TCATCATGGTTATCGGCA--TTTGCTTACATGTTCTTAACAT
gi|18 : ataaccttTACCATCAGTTTCATCCTCATTATCGTCGTCATTATTATTATTAATCATCATCAGAAGTACCGTCATCATTA---T-ATTTTAGTTAtttgcacgtctgtgacttttttt
gi|2 : tataaaTTGCATAGA-ATACTTAACATCCCT--TG-TT-------T---TTTTT----------TACAT----AAA---GCCGCTCCAGATCAAATACTACGTC---TTTCCTTCAACCAACAACG
gi|20 : accattaccacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTTTTCATCACCATCATCATGGTT-----------------GACGTTTTTAACATCCCT--TG---------TT---TTTTTATTC------TAC
gi|21 : A--GTCACTCTAGATCCAATGCTAC-TCAAATTTCCTTCAACCAACAACG
gi|22 : tctT----AAAA--GTCGCTCTAGATCCAAAACTACGCC---TTTCCTTCAACCAACAACG
gi|3 : TCATCAGCA---TTATTTTCAT---------CATGGTTATCGTCA--TTTGCTTAGACGTTCTTAATATCCCT--TG-TTTT-T--TTGTGTTTTTATTC------TAGAT----AAAA--GTCGCTTTAGATCCAATACTTCGTC---TTTCCTTCAACCAACAATG
gi|4 : aannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggTATCATCACTTTCATCATCATCGTCATTATCATTACTGTCACT-ATCATCAGCAGCAGCTTTGTTTTCATCA---TCATCATAGTTATCGTCA--TTTACTTGGACGTTCTAAACATCCCT--TG-TTGT-T--TT---TTTTAATTC------TACAT----AAAA--GTCACTCTAGATCCAATACTACATC---TTTCTTTTAACCGACAACG
gi|5 : ATCATAATCATTTTTTTT-ATCATCATCATCA---TTGTTTTCATCA---CCATCATGGTTATCGTCA--ATTGTTTAGACGTTCTTAATATCCCT--TGTTTGT-TTGTT---TTTTTATCA------CACAT----AAAA--GTCGCTCTAGATCCAAAACTACGCC---TATCCTTCAACCAACA
gi|6 : TTGCTTACACGTTTTTAACATACCT--TG-TTTT-G--TT---TTTTTATTC------TACAC----AAAA--GTCACTCTAGATCCAATACTACGTT---TTTCTTTCAACCAAC
gi|7 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATCATCACCGTAATCATC-ATCATCATCA------TTGTTTTCATCA---TCATCATGGTCA-CGTCA--TTTGCATAGACATTCTTAACATCCCT--TG-TTTT-G--TT---GTTTTATTC------TACAC----AAAA--GTCGCTCTAGATCCAATTCTACGTC---TTTCCTTCAACCAA
gi|8 : -ATCATCATCATCATCATTGTTTTCATAA---CCATCATGGTTATCGTCA--TTGGCTTAGCCATTCCTAAAATCCCT--TC-TTTTGT--TT---TTTTTATTC------TACATGTACATAACCGTTGCTCTAGATCCAATACTACGTC---TTTTCTTTAACCAACAACaa
gi|9 : cTTGCTTAGACATTCTTAACATACCT--TG-TTGT-G--TT---TTTTTATTC------TACAT----AAAA--GTCAAATTGGATCCAATACTACGTC---TTTCCTTCAACCAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): ATATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
Unaligned ( gi|19 ): AACACCACCATGGTGATTGCCATTATTATCACAGTTATTAACAGCAGCAGCAGTTTTATTATTGTCACCATTATCATCGTTAT
Alignments
lowQualScore : 111 333333333333 22222222222
lowQualScore : 1 1 3 0 111 5 555555555555 555 33 33 22 44444444444 777777 5555 33 444
lowQualScore : . . . . ... . ............ ... .. .. .. ........... ...... .... .. ...
lowQualScore : 0 0 7 7 777 7 333333333333 000 99 44 77 66666666666 222222 3333 22 111
consensus : TACCATCANTTTCATCATCATCGTCGTCGTCATTATTATCA---TT-ATCATCATCAGCA-------CATTGTTTTCATCA---TCATCATGGTTATCGTCA--TTTGCTTAGACGTTCTTAACATCCCT--TG-TTGT-T--TT---TTTTTATTC------TACAT----AAAA--GTCGCTCTAGATCCAATACTACGTC---TTTCCTTCAACCAACAACG
Reference ( family-1020 ) : TACCATCANTTTCATCNTCATCGTCGTCATCATCATTATCA---TT-ATCATCATCAGCA-------CATTGTTTTCATCA---TCATCATGGTTATCGTCA--TTTGCTTAGACGTTCTTAACATCCCT--TG-TTGT-T--TT---TTTTTATTC------TACAT----AAAA--GTCGCTCTAGATCCAATACTACGTC---TTTCCTTCAACCAACAACG
gi|1 : CACCAACAGCAT------CATTGTTTTCATCA---TCAACATAGTTATCGTCA--TTTGCTTAGACGTTCTCAACATCCCT--TG-TTG------T---TTTTTATTG------TACAT-------A--TTCACTCTAGATCTAATACTACGTC---TTTCCTTTAGCCAACAAC
gi|11 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcagcagcagcaccaacag-------CATTGTTTTCATCA---CCATCATGGTTATCGTCA--TTTGCTTAGACGTTTTTAACATCCCTTCTT-TTGT-A--TT---TTTTTATTCTACATGTACAT----AAAA--GTCGCTCTAAATCCAATACTACGTC---TTTCCATTAACAAAat
gi|12 : tcat-------CATTGTTTTCATCA---TCATTAGGGTTATCGTCA--TTTGCTTAGACGTTCTTAACATCCCT--TG-TTG--T--TA---ATTTTATTC------CACAT----AAAA--TGCGCTCTAGATTCAATACTACGTA---TTTCCCTCAACCAACAAC
gi|13 : catTCA---TCATCAT---TATCCTCAATTTTGCTAAGACGTTCTTAACATCCCA--TG--TAT-T--GTA--TTTTTATTC------TACAT----AAAT--GTCATTCTAGATCCAATACTACATC---TTTCCTTCAACCAACAACa
gi|14 : TTTTCATCA---TCATCCTGGTTATCGTCA--TTTACTTAGACGTTCCTATCATCCAT--TG----------A---TTTTTATTT------T--AT----AAAA--GTCGCTCTGGATCCAATACTACGTC---TTTCCTTAAACCAACAACa
gi|15 : ATCGTCA--TTTGCTTAGACGTTCTTAACATCCCT--TG-TT-T-T--GT---TTTTTATAC------TACAT----AAAA--GGCGTTCTAGATCCAATACTACGTC---TTTTCTTCAACCAACTACa
gi|16 : taTTATCGTCA--TTTGCTTAGGCGTTCTTATCATCCAT--TG-TT-------T---TTTTTATTC------TACAT----AAAA--GTCGATCTAGATCCAATACTACGTC---TTTCCTCCAACCATCA
gi|17 : ---TT-AACATCATTAA------------TGTTTGTATCA---TCATCATGGTTATCGGCA--TTTGCTTACATGTTCTTAACAT
gi|18 : ataaccttTACCATCAGTTTCATCCTCATTATCGTCGTCATTATTATTA---TTAATCATCATCAGAAG------TACCGTCATCATTA---T-ATTTTAGTTAtttgcacgtctgtgacttttttt
gi|19 : tataaaCACCACCATGGTGATTGCCATTATTATCACAGTT-ATTAACAGCAGCAGCAGTTTTATTATTGTCACCA---TTATCATCGTTAT
gi|2 : aaTTGCATAGA-ATACTTAACATCCCT--TG-TT-------T---TTTTT----------TACAT----AAA---GCCGCTCCAGATCAAATACTACGTC---TTTCCTTCAACCAACAACG
gi|20 : accattaccacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTTTTCATCACCATCATCATGGTT-----------------GACGTTTTTAACATCCCT--TG---------TT---TTTTTATTC------TAC
gi|21 : A--GTCACTCTAGATCCAATGCTAC-TCAAATTTCCTTCAACCAACAACG
gi|22 : tctT----AAAA--GTCGCTCTAGATCCAAAACTACGCC---TTTCCTTCAACCAACAACG
gi|3 : TCATCAGCA---------TTATTTTCAT---------CATGGTTATCGTCA--TTTGCTTAGACGTTCTTAATATCCCT--TG-TTTT-T--TTGTGTTTTTATTC------TAGAT----AAAA--GTCGCTTTAGATCCAATACTTCGTC---TTTCCTTCAACCAACAATG
gi|4 : aannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggTATCATCACTTTCATCATCATCGTCATTATCATTACTGTCA---CT-ATCATCAGCAGCAG------CTTTGTTTTCATCA---TCATCATAGTTATCGTCA--TTTACTTGGACGTTCTAAACATCCCT--TG-TTGT-T--TT---TTTTAATTC------TACAT----AAAA--GTCACTCTAGATCCAATACTACATC---TTTCTTTTAACCGACAACG
gi|5 : TCATAATCATTTTTT---TT-ATCATCATCATCA---------TTGTTTTCATCA---CCATCATGGTTATCGTCA--ATTGTTTAGACGTTCTTAATATCCCT--TGTTTGT-TTGTT---TTTTTATCA------CACAT----AAAA--GTCGCTCTAGATCCAAAACTACGCC---TATCCTTCAACCAACA
gi|6 : aTTGCTTACACGTTTTTAACATACCT--TG-TTTT-G--TT---TTTTTATTC------TACAC----AAAA--GTCACTCTAGATCCAATACTACGTT---TTTCTTTCAACCAAC
gi|7 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTCATCACCGTAATCA---TC-ATCATCATCA------------TTGTTTTCATCA---TCATCATGGTCA-CGTCA--TTTGCATAGACATTCTTAACATCCCT--TG-TTTT-G--TT---GTTTTATTC------TACAC----AAAA--GTCGCTCTAGATCCAATTCTACGTC---TTTCCTTCAACCAA
gi|8 : a-ATCATCATCATCAT------CATTGTTTTCATAA---CCATCATGGTTATCGTCA--TTGGCTTAGCCATTCCTAAAATCCCT--TC-TTTTGT--TT---TTTTTATTC------TACATGTACATAACCGTTGCTCTAGATCCAATACTACGTC---TTTTCTTTAACCAACAACaa
gi|9 : cTTGCTTAGACATTCTTAACATACCT--TG-TTGT-G--TT---TTTTTATTC------TACAT----AAAA--GTCAAATTGGATCCAATACTACGTC---TTTCCTTCAACCAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): ATATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
Alignments
lowQualScore : 111 33333333 22222222222
lowQualScore : 1 3 0 111 5 0 44444444 555 33 33 22 44444444444 777777 5555 33 444
lowQualScore : . . . ... . . ........ ... .. .. .. ........... ...... .... .. ...
lowQualScore : 0 7 7 777 7 1 33333333 000 99 44 77 66666666666 222222 3333 22 111
consensus : TACCATCANTTTCATCATCATCGTCGTCGTCATTATTATCG---TT-ATCATCATCAGCA-------CATTGTTTTCATCA---TCATCATGGTTATCGTCA--TTTGCTTAGACGTTCTTAACATCCCT--TG-TTGT-T--TT---TTTTTATTC------TACAT----AAAA--GTCGCTCTAGATCCAATACTACGTC---TTTCCTTCAACCAACAACG
Reference ( family-1020 ) : TACCATCANTTTCATCATCATCGTCGTCGTCATTATTATCA---TT-ATCATCATCAGCA-------CATTGTTTTCATCA---TCATCATGGTTATCGTCA--TTTGCTTAGACGTTCTTAACATCCCT--TG-TTGT-T--TT---TTTTTATTC------TACAT----AAAA--GTCGCTCTAGATCCAATACTACGTC---TTTCCTTCAACCAACAACG
gi|1 : CACCAACAGCAT------CATTGTTTTCATCA---TCAACATAGTTATCGTCA--TTTGCTTAGACGTTCTCAACATCCCT--TG-TTG------T---TTTTTATTG------TACAT-------A--TTCACTCTAGATCTAATACTACGTC---TTTCCTTTAGCCAACAAC
gi|11 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcagcagcagcaccaacag-------CATTGTTTTCATCA---CCATCATGGTTATCGTCA--TTTGCTTAGACGTTTTTAACATCCCTTCTT-TTGT-A--TT---TTTTTATTCTACATGTACAT----AAAA--GTCGCTCTAAATCCAATACTACGTC---TTTCCATTAACAAAat
gi|12 : tcat-------CATTGTTTTCATCA---TCATTAGGGTTATCGTCA--TTTGCTTAGACGTTCTTAACATCCCT--TG-TTG--T--TA---ATTTTATTC------CACAT----AAAA--TGCGCTCTAGATTCAATACTACGTA---TTTCCCTCAACCAACAAC
gi|13 : catTCA---TCATCAT---TATCCTCAATTTTGCTAAGACGTTCTTAACATCCCA--TG--TAT-T--GTA--TTTTTATTC------TACAT----AAAT--GTCATTCTAGATCCAATACTACATC---TTTCCTTCAACCAACAACa
gi|14 : TTTTCATCA---TCATCCTGGTTATCGTCA--TTTACTTAGACGTTCCTATCATCCAT--TG----------A---TTTTTATTT------T--AT----AAAA--GTCGCTCTGGATCCAATACTACGTC---TTTCCTTAAACCAACAACa
gi|15 : ATCGTCA--TTTGCTTAGACGTTCTTAACATCCCT--TG-TT-T-T--GT---TTTTTATAC------TACAT----AAAA--GGCGTTCTAGATCCAATACTACGTC---TTTTCTTCAACCAACTACa
gi|16 : taTTATCGTCA--TTTGCTTAGGCGTTCTTATCATCCAT--TG-TT-------T---TTTTTATTC------TACAT----AAAA--GTCGATCTAGATCCAATACTACGTC---TTTCCTCCAACCATCA
gi|17 : ---TT-AACATCATTAA------------TGTTTGTATCA---TCATCATGGTTATCGGCA--TTTGCTTACATGTTCTTAACAT
gi|18 : ataaccttTACCATCAGTTTCATCCTCATTATCGTCGTCATTATTATTA---TTAATCATCATCAGAAG------TACCGTCATCATTA---T-ATTTTAGTTAtttgcacgtctgtgacttttttt
gi|19 : tataaaCACCACCATGGTGATTGCCATTATTATCACAGTT-ATTAACAGCAGCAGCAGTTTTATTATTGTCACCA---TTATCATCGTTAT
gi|2 : aaTTGCATAGA-ATACTTAACATCCCT--TG-TT-------T---TTTTT----------TACAT----AAA---GCCGCTCCAGATCAAATACTACGTC---TTTCCTTCAACCAACAACG
gi|20 : accattaccacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTTTTCATCACCATCATCATGGTT-----------------GACGTTTTTAACATCCCT--TG---------TT---TTTTTATTC------TAC
gi|21 : A--GTCACTCTAGATCCAATGCTAC-TCAAATTTCCTTCAACCAACAACG
gi|22 : tctT----AAAA--GTCGCTCTAGATCCAAAACTACGCC---TTTCCTTCAACCAACAACG
gi|3 : TCATCAGCA---------TTATTTTCAT---------CATGGTTATCGTCA--TTTGCTTAGACGTTCTTAATATCCCT--TG-TTTT-T--TTGTGTTTTTATTC------TAGAT----AAAA--GTCGCTTTAGATCCAATACTTCGTC---TTTCCTTCAACCAACAATG
gi|4 : aannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggTATCATCACTTTCATCATCATCGTCATTATCATTACTGTCA---CT-ATCATCAGCAGCAG------CTTTGTTTTCATCA---TCATCATAGTTATCGTCA--TTTACTTGGACGTTCTAAACATCCCT--TG-TTGT-T--TT---TTTTAATTC------TACAT----AAAA--GTCACTCTAGATCCAATACTACATC---TTTCTTTTAACCGACAACG
gi|5 : TCATAATCATTTTTT---TT-ATCATCATCATCA---------TTGTTTTCATCA---CCATCATGGTTATCGTCA--ATTGTTTAGACGTTCTTAATATCCCT--TGTTTGT-TTGTT---TTTTTATCA------CACAT----AAAA--GTCGCTCTAGATCCAAAACTACGCC---TATCCTTCAACCAACA
gi|6 : aTTGCTTACACGTTTTTAACATACCT--TG-TTTT-G--TT---TTTTTATTC------TACAC----AAAA--GTCACTCTAGATCCAATACTACGTT---TTTCTTTCAACCAAC
gi|7 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATCATCACCG---TA-ATCATCATCATCAT------CATTGTTTTCATCA---TCATCATGGTCA-CGTCA--TTTGCATAGACATTCTTAACATCCCT--TG-TTTT-G--TT---GTTTTATTC------TACAC----AAAA--GTCGCTCTAGATCCAATTCTACGTC---TTTCCTTCAACCAA
gi|8 : -ATCATCATCATCAT------CATTGTTTTCATAA---CCATCATGGTTATCGTCA--TTGGCTTAGCCATTCCTAAAATCCCT--TC-TTTTGT--TT---TTTTTATTC------TACATGTACATAACCGTTGCTCTAGATCCAATACTACGTC---TTTTCTTTAACCAACAACaa
gi|9 : cTTGCTTAGACATTCTTAACATACCT--TG-TTGT-G--TT---TTTTTATTC------TACAT----AAAA--GTCAAATTGGATCCAATACTACGTC---TTTCCTTCAACCAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): ATATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
Alignments
lowQualScore : 1111 33333333 22222222222
lowQualScore : 1 3 0 5555 5 0 44444444 555 33 33 22 44444444444 777777 5555 33 444
lowQualScore : . . . .... . . ........ ... .. .. .. ........... ...... .... .. ...
lowQualScore : 0 7 7 4444 7 1 33333333 000 99 44 77 66666666666 222222 3333 22 111
consensus : TACCATCANTTTCATCATCATCGTCGTCGTCATTATTATC---GTT-ATCATCATCAGCA-------CATTGTTTTCATCA---TCATCATGGTTATCGTCA--TTTGCTTAGACGTTCTTAACATCCCT--TG-TTGT-T--TT---TTTTTATTC------TACAT----AAAA--GTCGCTCTAGATCCAATACTACGTC---TTTCCTTCAACCAACAACG
Reference ( family-1020 ) : TACCATCANTTTCATCATCATCGTCGTCGTCATTATTATC---GTT-ATCATCATCAGCA-------CATTGTTTTCATCA---TCATCATGGTTATCGTCA--TTTGCTTAGACGTTCTTAACATCCCT--TG-TTGT-T--TT---TTTTTATTC------TACAT----AAAA--GTCGCTCTAGATCCAATACTACGTC---TTTCCTTCAACCAACAACG
gi|1 : CACCAACAGCAT------CATTGTTTTCATCA---TCAACATAGTTATCGTCA--TTTGCTTAGACGTTCTCAACATCCCT--TG-TTG------T---TTTTTATTG------TACAT-------A--TTCACTCTAGATCTAATACTACGTC---TTTCCTTTAGCCAACAAC
gi|11 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcagcagcagcaccaacag-------CATTGTTTTCATCA---CCATCATGGTTATCGTCA--TTTGCTTAGACGTTTTTAACATCCCTTCTT-TTGT-A--TT---TTTTTATTCTACATGTACAT----AAAA--GTCGCTCTAAATCCAATACTACGTC---TTTCCATTAACAAAat
gi|12 : tcat-------CATTGTTTTCATCA---TCATTAGGGTTATCGTCA--TTTGCTTAGACGTTCTTAACATCCCT--TG-TTG--T--TA---ATTTTATTC------CACAT----AAAA--TGCGCTCTAGATTCAATACTACGTA---TTTCCCTCAACCAACAAC
gi|13 : catTCA---TCATCAT---TATCCTCAATTTTGCTAAGACGTTCTTAACATCCCA--TG--TAT-T--GTA--TTTTTATTC------TACAT----AAAT--GTCATTCTAGATCCAATACTACATC---TTTCCTTCAACCAACAACa
gi|14 : TTTTCATCA---TCATCCTGGTTATCGTCA--TTTACTTAGACGTTCCTATCATCCAT--TG----------A---TTTTTATTT------T--AT----AAAA--GTCGCTCTGGATCCAATACTACGTC---TTTCCTTAAACCAACAACa
gi|15 : ATCGTCA--TTTGCTTAGACGTTCTTAACATCCCT--TG-TT-T-T--GT---TTTTTATAC------TACAT----AAAA--GGCGTTCTAGATCCAATACTACGTC---TTTTCTTCAACCAACTACa
gi|16 : taTTATCGTCA--TTTGCTTAGGCGTTCTTATCATCCAT--TG-TT-------T---TTTTTATTC------TACAT----AAAA--GTCGATCTAGATCCAATACTACGTC---TTTCCTCCAACCATCA
gi|17 : TT-AACATCATTAA------------TGTTTGTATCA---TCATCATGGTTATCGGCA--TTTGCTTACATGTTCTTAACAT
gi|18 : ataaccttTACCATCAGTTTCATCCTCATTATCGTCGTCATTATTATT---ATTAATCATCATCAGAAG------TACCGTCATCATTA---T-ATTTTAGTTAtttgcacgtctgtgacttttttt
gi|19 : tataaaCACCACCATGGTGATTGCCATTATTATCACAGTT-ATTAACAGCAGCAGCAGTTTTATTATTGTCACCA---TTATCATCGTTAT
gi|2 : aaTTGCATAGA-ATACTTAACATCCCT--TG-TT-------T---TTTTT----------TACAT----AAA---GCCGCTCCAGATCAAATACTACGTC---TTTCCTTCAACCAACAACG
gi|20 : accattaccacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTTTTCATCACCATCATCATGGTT-----------------GACGTTTTTAACATCCCT--TG---------TT---TTTTTATTC------TAC
gi|21 : A--GTCACTCTAGATCCAATGCTAC-TCAAATTTCCTTCAACCAACAACG
gi|22 : tctT----AAAA--GTCGCTCTAGATCCAAAACTACGCC---TTTCCTTCAACCAACAACG
gi|3 : TCATCAGCA---------TTATTTTCAT---------CATGGTTATCGTCA--TTTGCTTAGACGTTCTTAATATCCCT--TG-TTTT-T--TTGTGTTTTTATTC------TAGAT----AAAA--GTCGCTTTAGATCCAATACTTCGTC---TTTCCTTCAACCAACAATG
gi|4 : aannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggTATCATCACTTTCATCATCATCGTCATTATCATTACTGTC---ACT-ATCATCAGCAGCAG------CTTTGTTTTCATCA---TCATCATAGTTATCGTCA--TTTACTTGGACGTTCTAAACATCCCT--TG-TTGT-T--TT---TTTTAATTC------TACAT----AAAA--GTCACTCTAGATCCAATACTACATC---TTTCTTTTAACCGACAACG
gi|5 : TCATAATCATTTTT---TTT-ATCATCATCATCA---------TTGTTTTCATCA---CCATCATGGTTATCGTCA--ATTGTTTAGACGTTCTTAATATCCCT--TGTTTGT-TTGTT---TTTTTATCA------CACAT----AAAA--GTCGCTCTAGATCCAAAACTACGCC---TATCCTTCAACCAACA
gi|6 : aTTGCTTACACGTTTTTAACATACCT--TG-TTTT-G--TT---TTTTTATTC------TACAC----AAAA--GTCACTCTAGATCCAATACTACGTT---TTTCTTTCAACCAAC
gi|7 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATCATCACC---GTA-ATCATCATCATCAT------CATTGTTTTCATCA---TCATCATGGTCA-CGTCA--TTTGCATAGACATTCTTAACATCCCT--TG-TTTT-G--TT---GTTTTATTC------TACAC----AAAA--GTCGCTCTAGATCCAATTCTACGTC---TTTCCTTCAACCAA
gi|8 : -ATCATCATCATCAT------CATTGTTTTCATAA---CCATCATGGTTATCGTCA--TTGGCTTAGCCATTCCTAAAATCCCT--TC-TTTTGT--TT---TTTTTATTC------TACATGTACATAACCGTTGCTCTAGATCCAATACTACGTC---TTTTCTTTAACCAACAACaa
gi|9 : cTTGCTTAGACATTCTTAACATACCT--TG-TTGT-G--TT---TTTTTATTC------TACAT----AAAA--GTCAAATTGGATCCAATACTACGTC---TTTCCTTCAACCAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): ATATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
Alignments
lowQualScore : 1111 33333333 22222222222
lowQualScore : 1 3 0 5555 5 0 44444444 555 33 33 22 44444444444 777777 5555 33 444
lowQualScore : . . . .... . . ........ ... .. .. .. ........... ...... .... .. ...
lowQualScore : 0 7 7 4444 7 1 33333333 000 99 44 77 66666666666 222222 3333 22 111
consensus : TACCATCANTTTCATCATCATCGTCGTCGTCATTATTATC---GTT-ATCATCATCAGCA-------CATTGTTTTCATCA---TCATCATGGTTATCGTCA--TTTGCTTAGACGTTCTTAACATCCCT--TG-TTGT-T--TT---TTTTTATTC------TACAT----AAAA--GTCGCTCTAGATCCAATACTACGTC---TTTCCTTCAACCAACAACG
Reference ( family-1020 ) : TACCATCANTTTCATCATCATCGTCGTCGTCATTATTATC---GTT-ATCATCATCAGCA-------CATTGTTTTCATCA---TCATCATGGTTATCGTCA--TTTGCTTAGACGTTCTTAACATCCCT--TG-TTGT-T--TT---TTTTTATTC------TACAT----AAAA--GTCGCTCTAGATCCAATACTACGTC---TTTCCTTCAACCAACAACG
gi|1 : CACCAACAGCAT------CATTGTTTTCATCA---TCAACATAGTTATCGTCA--TTTGCTTAGACGTTCTCAACATCCCT--TG-TTG------T---TTTTTATTG------TACAT-------A--TTCACTCTAGATCTAATACTACGTC---TTTCCTTTAGCCAACAAC
gi|11 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcagcagcagcaccaacag-------CATTGTTTTCATCA---CCATCATGGTTATCGTCA--TTTGCTTAGACGTTTTTAACATCCCTTCTT-TTGT-A--TT---TTTTTATTCTACATGTACAT----AAAA--GTCGCTCTAAATCCAATACTACGTC---TTTCCATTAACAAAat
gi|12 : tcat-------CATTGTTTTCATCA---TCATTAGGGTTATCGTCA--TTTGCTTAGACGTTCTTAACATCCCT--TG-TTG--T--TA---ATTTTATTC------CACAT----AAAA--TGCGCTCTAGATTCAATACTACGTA---TTTCCCTCAACCAACAAC
gi|13 : catTCA---TCATCAT---TATCCTCAATTTTGCTAAGACGTTCTTAACATCCCA--TG--TAT-T--GTA--TTTTTATTC------TACAT----AAAT--GTCATTCTAGATCCAATACTACATC---TTTCCTTCAACCAACAACa
gi|14 : TTTTCATCA---TCATCCTGGTTATCGTCA--TTTACTTAGACGTTCCTATCATCCAT--TG----------A---TTTTTATTT------T--AT----AAAA--GTCGCTCTGGATCCAATACTACGTC---TTTCCTTAAACCAACAACa
gi|15 : ATCGTCA--TTTGCTTAGACGTTCTTAACATCCCT--TG-TT-T-T--GT---TTTTTATAC------TACAT----AAAA--GGCGTTCTAGATCCAATACTACGTC---TTTTCTTCAACCAACTACa
gi|16 : taTTATCGTCA--TTTGCTTAGGCGTTCTTATCATCCAT--TG-TT-------T---TTTTTATTC------TACAT----AAAA--GTCGATCTAGATCCAATACTACGTC---TTTCCTCCAACCATCA
gi|17 : TT-AACATCATTAA------------TGTTTGTATCA---TCATCATGGTTATCGGCA--TTTGCTTACATGTTCTTAACAT
gi|18 : ataaccttTACCATCAGTTTCATCCTCATTATCGTCGTCATTATTATT---ATTAATCATCATCAGAAG------TACCGTCATCATTA---T-ATTTTAGTTAtttgcacgtctgtgacttttttt
gi|19 : tataaaCACCACCATGGTGATTGCCATTATTATCACAGTT-ATTAACAGCAGCAGCAGTTTTATTATTGTCACCA---TTATCATCGTTAT
gi|2 : aaTTGCATAGA-ATACTTAACATCCCT--TG-TT-------T---TTTTT----------TACAT----AAA---GCCGCTCCAGATCAAATACTACGTC---TTTCCTTCAACCAACAACG
gi|20 : accattaccacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTTTTCATCACCATCATCATGGTT-----------------GACGTTTTTAACATCCCT--TG---------TT---TTTTTATTC------TAC
gi|21 : A--GTCACTCTAGATCCAATGCTAC-TCAAATTTCCTTCAACCAACAACG
gi|22 : tctT----AAAA--GTCGCTCTAGATCCAAAACTACGCC---TTTCCTTCAACCAACAACG
gi|3 : TCATCAGCA---------TTATTTTCAT---------CATGGTTATCGTCA--TTTGCTTAGACGTTCTTAATATCCCT--TG-TTTT-T--TTGTGTTTTTATTC------TAGAT----AAAA--GTCGCTTTAGATCCAATACTTCGTC---TTTCCTTCAACCAACAATG
gi|4 : aannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggTATCATCACTTTCATCATCATCGTCATTATCATTACTGTC---ACT-ATCATCAGCAGCAG------CTTTGTTTTCATCA---TCATCATAGTTATCGTCA--TTTACTTGGACGTTCTAAACATCCCT--TG-TTGT-T--TT---TTTTAATTC------TACAT----AAAA--GTCACTCTAGATCCAATACTACATC---TTTCTTTTAACCGACAACG
gi|5 : TCATAATCATTTTT---TTT-ATCATCATCATCA---------TTGTTTTCATCA---CCATCATGGTTATCGTCA--ATTGTTTAGACGTTCTTAATATCCCT--TGTTTGT-TTGTT---TTTTTATCA------CACAT----AAAA--GTCGCTCTAGATCCAAAACTACGCC---TATCCTTCAACCAACA
gi|6 : aTTGCTTACACGTTTTTAACATACCT--TG-TTTT-G--TT---TTTTTATTC------TACAC----AAAA--GTCACTCTAGATCCAATACTACGTT---TTTCTTTCAACCAAC
gi|7 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATCATCACC---GTA-ATCATCATCATCAT------CATTGTTTTCATCA---TCATCATGGTCA-CGTCA--TTTGCATAGACATTCTTAACATCCCT--TG-TTTT-G--TT---GTTTTATTC------TACAC----AAAA--GTCGCTCTAGATCCAATTCTACGTC---TTTCCTTCAACCAA
gi|8 : -ATCATCATCATCAT------CATTGTTTTCATAA---CCATCATGGTTATCGTCA--TTGGCTTAGCCATTCCTAAAATCCCT--TC-TTTTGT--TT---TTTTTATTC------TACATGTACATAACCGTTGCTCTAGATCCAATACTACGTC---TTTTCTTTAACCAACAACaa
gi|9 : cTTGCTTAGACATTCTTAACATACCT--TG-TTGT-G--TT---TTTTTATTC------TACAT----AAAA--GTCAAATTGGATCCAATACTACGTC---TTTCCTTCAACCAA
blockSeqs : C G ACAG A GCAGTTTT CCA AT TC TT TTTTTGTG TACATG GTAC CC AAA
blockSeqs : C A . GT . . . T GTTTGTT . . . .
blockSeqs : T . GC . . . T ATTGTA . . . .
blockSeqs : G . TC . . . T TTGTTT . . . .
blockSeqs : . TC . . . T GTATT . . . .
blockSeqs : . C . . . T GTTTT . . . .
blockSeqs : C . . . T TTGTT . . . .
blockSeqs : . . . . T TTGTT . . . .
blockSeqs : . . . . T GTGTT . . . .
blockSeqs : . . . . T GTTA . . . .
blockSeqs : . . . T TTGT . . . .
blockSeqs : . . . T TT . . . .
blockSeqs : . . . . A . . . .
blockSeqs : . . T . . . .
blockSeqs : . . T . . . .
blockSeqs : . .
blockSeqCons : TTGTT******
originalCons : TACCATCANTTTCATCATCATCGTCGTCGTCATTATTATC---GTT-ATCATCATCAGCA-------CATTGTTTTCATCA---TCATCATGGTTATCGTCA--TTTGCTTAGACGTTCTTAACATCCCT--TG-TTGT-T--TT---TTTTTATTC------TACAT----AAAA--GTCGCTCTAGATCCAATACTACGTC---TTTCCTTCAACCAACAACG
finalCons : TACCATCANTTTCATCATCATCGTCGTCGTCATTATTATC---GTT-ATCATCATCAGCA-------CATTGTTTTCATCA---TCATCATGGTTATCGTCA--TTTGCTTAGACGTTCTTAACATCCCT--TG-TTTTGTT------TTTTTATTC------TACAT----AAAA--GTCGCTCTAGATCCAATACTACGTC---TTTCCTTCAACCAACAACG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): ATATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
Alignments
lowQualScore : 1111 33333333 1111111
lowQualScore : 1 3 0 5555 5 0 44444444 555 33 4444444 88888888 777777 5555 33 444
lowQualScore : . . . .... . . ........ ... .. ....... ........ ...... .... .. ...
lowQualScore : 0 7 7 4444 7 1 33333333 000 99 3333333 55555555 222222 3333 22 111
consensus : TACCATCANTTTCATCATCATCGTCGTCGTCATTATTATC---GTT-ATCATCATCAGCA-------CATTGTTTTCATCA---TCATCATGGTTATCGTCA--TTTGCTTAGACGTTCTTAACATCCCTTG---T---TTTG--T---T-TTTTTATTC------TACAT----AAAA--GTCGCTCTAGATCCAATACTACGTC---TTTCCTTCAACCAACAACG
Reference ( family-1020 ) : TACCATCANTTTCATCATCATCGTCGTCGTCATTATTATC---GTT-ATCATCATCAGCA-------CATTGTTTTCATCA---TCATCATGGTTATCGTCA--TTTGCTTAGACGTTCTTAACATCCCTTG---T---TTTG--T---T-TTTTTATTC------TACAT----AAAA--GTCGCTCTAGATCCAATACTACGTC---TTTCCTTCAACCAACAACG
gi|1 : CACCAACAGCAT------CATTGTTTTCATCA---TCAACATAGTTATCGTCA--TTTGCTTAGACGTTCTCAACATCCCTTG--------TTG------T-TTTTTATTG------TACAT-------A--TTCACTCTAGATCTAATACTACGTC---TTTCCTTTAGCCAACAAC
gi|11 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcagcagcagcaccaacag-------CATTGTTTTCATCA---CCATCATGGTTATCGTCA--TTTGCTTAGACGTTTTTAACATCCCTTC---T---TTTGTAT---T-TTTTTATTCTACATGTACAT----AAAA--GTCGCTCTAAATCCAATACTACGTC---TTTCCATTAACAAAat
gi|12 : tcat-------CATTGTTTTCATCA---TCATTAGGGTTATCGTCA--TTTGCTTAGACGTTCTTAACATCCCTTG--------TTG--T---TAATTTTATTC------CACAT----AAAA--TGCGCTCTAGATTCAATACTACGTA---TTTCCCTCAACCAACAAC
gi|13 : catTCA---TCATCAT---TATCCTCAATTTTGCTAAGACGTTCTTAACATCCCATG---T---ATTG--T---A-TTTTTATTC------TACAT----AAAT--GTCATTCTAGATCCAATACTACATC---TTTCCTTCAACCAACAACa
gi|14 : TTTTCATCA---TCATCCTGGTTATCGTCA--TTTACTTAGACGTTCCTATCATCCATTG-----------------A-TTTTTATTT------T--AT----AAAA--GTCGCTCTGGATCCAATACTACGTC---TTTCCTTAAACCAACAACa
gi|15 : ATCGTCA--TTTGCTTAGACGTTCTTAACATCCCTTG---T---TTTG--T---T-TTTT-ATAC------TACAT----AAAA--GGCGTTCTAGATCCAATACTACGTC---TTTTCTTCAACCAACTACa
gi|16 : taTTATCGTCA--TTTGCTTAGGCGTTCTTATCATCCATTG---T---TTT----------TTTTATTC------TACAT----AAAA--GTCGATCTAGATCCAATACTACGTC---TTTCCTCCAACCATCA
gi|17 : TT-AACATCATTAA------------TGTTTGTATCA---TCATCATGGTTATCGGCA--TTTGCTTACATGTTCTTAACAT--TTTG---CACGTCTG--TGACT-TTTTT
gi|18 : ataaccttTACCATCAGTTTCATCCTCATTATCGTCGTCATTATTATT---ATTAATCATCATCAGAAG------TACCGTCATCATTA---T-ATTTTAGTTAt
gi|19 : tataaaCACCACCATGGTGATTGCCATTATTATCACAGTT-ATTAACAGCAGCAGCAGTTTTATTATTGTCACCA---TTATCATCGTTAT
gi|2 : aaTTGCATAGA-ATACTTAACATCCCTTG---T---TTT----------TTTT----------TACAT----AAA---GCCGCTCCAGATCAAATACTACGTC---TTTCCTTCAACCAACAACG
gi|20 : accattaccacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTTTTCATCACCATCATCATGGTT-----------------GACGTTTTTAACATCCC-----------TTG--T---T-TTTTTATTC------TAC
gi|21 : A--GTCACTCTAGATCCAATGCTAC-TCAAATTTCCTTCAACCAACAACG
gi|22 : tctT----AAAA--GTCGCTCTAGATCCAAAACTACGCC---TTTCCTTCAACCAACAACG
gi|3 : TCATCAGCA---------TTATTTTCAT---------CATGGTTATCGTCA--TTTGCTTAGACGTTCTTAATATCCCTTGTTTT---TTTG--T---G-TTTTTATTC------TAGAT----AAAA--GTCGCTTTAGATCCAATACTTCGTC---TTTCCTTCAACCAACAATG
gi|4 : aannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggTATCATCACTTTCATCATCATCGTCATTATCATTACTGTC---ACT-ATCATCAGCAGCAG------CTTTGTTTTCATCA---TCATCATAGTTATCGTCA--TTTACTTGGACGTTCTAAACATCCCTTG---T---TGTT--T---T-TTTTAATTC------TACAT----AAAA--GTCACTCTAGATCCAATACTACATC---TTTCTTTTAACCGACAACG
gi|5 : TCATAATCATTTTT---TTT-ATCATCATCATCA---------TTGTTTTCATCA---CCATCATGGTTATCGTCA--ATTGTTTAGACGTTCTTAATATCCCTTG---TTTGTTTG--T---T-TTTTTATCA------CACAT----AAAA--GTCGCTCTAGATCCAAAACTACGCC---TATCCTTCAACCAACA
gi|6 : aTTGCTTACACGTTTTTAACATACCTTG---T---TTTG--T---T-TTTTTATTC------TACAC----AAAA--GTCACTCTAGATCCAATACTACGTT---TTTCTTTCAACCAAC
gi|7 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATCATCACC---GTA-ATCATCATCATCAT------CATTGTTTTCATCA---TCATCATGGTCA-CGTCA--TTTGCATAGACATTCTTAACATCCCTTG---T---TTTG--T---T-GTTTTATTC------TACAC----AAAA--GTCGCTCTAGATCCAATTCTACGTC---TTTCCTTCAACCAA
gi|8 : -ATCATCATCATCAT------CATTGTTTTCATAA---CCATCATGGTTATCGTCA--TTGGCTTAGCCATTCCTAAAATCCCTTC---T---TTTGT-T---T-TTTTTATTC------TACATGTACATAACCGTTGCTCTAGATCCAATACTACGTC---TTTTCTTTAACCAACAACaa
gi|9 : cTTGCTTAGACATTCTTAACATACCTTG---T---TGTG--T---T-TTTTTATTC------TACAT----AAAA--GTCAAATTGGATCCAATACTACGTC---TTTCCTTCAACCAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): ATATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG