lowQualScore : 111111 222222222222222222 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666
lowQualScore : 1 1111111 222222222 22222 111111111 11111 22222222222222222 111111111 11 4 8888 33 22 1 1 4 1 1 1 1 1 11 222 55555 22 1 4 1 1 88888888 1 1 1 111111 77777777 11 1 1 22 4444 1 999999999999999999 33333 1 55 55 1 5555 1 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 0 0000000 333333333 00000 6666 444444444 3 4 44444 11111111111111111 888888888 6 88 6 0 5555 44 11 5 5 0 7 6 6 5 6 6 6 5 5 5 22 777 6 6 22222 6 6 6 6 11 6 5 0 6 6 5 7 88888888 6 6 6 6 5 7 6 6 6 6 6 6 5 6 555555 55555555 22 5 6 6 6 6 5 6 11 6 6666 6 5 555555555555555555 6 22222 6 5 6 6 6 55 55 5 2222 7 6 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 6 6
lowQualScore : . ....... ......... ..... .... ......... . . ..... ................. ......... . .. . . .... .. .. . . . . . . . . . . . . . .. ... . . ..... . . . . .. . . . . . . . ........ . . . . . . . . . . . . . . ...... ........ .. . . . . . . . .. . .... . . .................. . ..... . . . . . .. .. . .... . . ............................................................................................................ . .
lowQualScore : 5 8888888 555555555 00000 5555 555555555 6 0 00000 55555555555555555 222222222 7 33 0 0 0000 00 00 0 0 0 0 0 0 0 0 0 0 0 0 0 00 000 0 0 00000 0 0 0 0 00 0 0 0 0 0 0 0 00000000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 000000 00000000 00 0 0 0 0 0 0 0 00 0 0000 0 0 000000000000000000 0 00000 0 0 0 0 0 00 00 0 0000 0 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0
consensus : AGTTTAAACATATTTTATTACTTATGTTAC-------AGAT------AATTAAC--A--TCA----CATG---------ATAATAC-ATAT-TTA-----TATATAACATACGCAA----AT----NGAA----CTACAAGTTATAACA--ACACCAGTTACAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTTGGAAAGAA-CAGCTCAATGCCAATTTTAAAGCGTGTATAGTTACGATGAATTTGATTTATTTATTTTATCACAATTGGCGTTTGAATTTACATACTGTATTTTTGACAATAACTCATTTTGTAAAAATGGCGCCTACTGTTGTAATGTTTAAATTTCAATATCGCGTGTGTCACCCGCGGGCATTAACCAGTGCAACACAACGTCGGAGCAGCGACAAGACGAGCCTTCGTAGAAATTGAGTCGGTAGTTGGTCCCATTCCTCTGCTATAGCAGCCCTAAGTTCATGATTTGTCCTGAGATTTCTGGCACGAACTCTCCGTTTCAA-ATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGACGGTGCCATGGTGGAGGCGAATGATTGGAACAAA--AACTGGCTGGAGCACCTGGTCGATGTAACGCTGCGCCGTTAAACCACGTCCATATCATTTTCCAAACTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCAACCACACAAGCGTCCGCAAACTTTTCACCAGTACGACGGTAGATGTGCCTACGCCGGTCATTGGAACCGA------ATTTAGATTCATCAGTGAAAAAAAGAACCGATCTCCACTGATTAACCAACTATCTGAGATGTTGCAATGCCCAGTGTAGACGTAAACGTCGATGGCTGTGCTNAAGATGTGTCCTCGCAATACGGGCGTCGGCAAAGTATCCCGGCAGCAACTCTGACGCGTCGCCTGGCGGTTCTGGCGCTAATATGCAACCGAGTACGTCCT--TGTGTTGAGAGCAGTGTTACGTCGGACTAAAAATCGGTCTCGCAGATGTGTCAAGGCGATTTGCCGATCCTGACGTAATGTTATTTCTCG--AGGACGTC--CAGACCTCGACAGGTCGGCAACAGACCCAGTTGCAACAAATGTCTGGCGTAAATACCG---------AACACTAACCCCGAAATCGTTCACAACACGTAATAGTTG
Reference ( gi|1 ) : AGTTTAAACATATTTTATTACTTATGTAAC-------AGAC------AGTTAAC--C--TCA----CATG---------ATAATAC-ATAT-TTA-----TATATAACATGCACAA----AT----TGAA----CTTTAAGTTATAACA--ACACTAGTTACAGTTCTCTCTATATCATCAATATCAAAAGTCTTGTCCATCTATATTAAATATAAATATCTCCACTCAGAGGCAACCGATTTTTATACATTTGGTATCGTTGGAAAAAAACAGCTCAATGCCAAT----AAGCGTGTTAAGTTCTGATGAATTTTATTTATTGATTT-ATCACATTTGGTGTCTGAATTTACCTACTGTATTTTTGACAATAACTTATTTTGTAAAAATGGCACCTACTGTTATCATGTTTAAATTTCAATATCGGGTGTGTCCCCCATGGGCAGCGACCAATGCAACACGACGTCGGCGATTCGACAAGACAAGCTTTTGTAGAAATTGAGTCGGTAGTTGGTCCCATTCCTTTGCTATAGCATTCTTAAGTTCATGATTTGTCCTGAGATTTCTGGCACGAACTCTCCTTTTCAATATAGTGCAGGCCATGGCAGTACATCAATGTTATTTGCCGTCAGGAAGTTTGTTGTGAGTCTCGCACTATGGGGCCATGCGTTGTCTTATTGGAAGATGGTGCCATAGTGGAGGCCAATGAATGG--CAGACCAACTGGCTGGAGCACCTGGTTGATGTAACGTTGCGCCGTTAAACCACATCCATGTCCTTTTCCAAACACAAGGAAGACCAGTCTGGTTTTGTGGTCAGCCATATATCCAGCCAACACCATTGCCCTAGGCCCACCCCACCTATCTGACTCGACCACATAGGCATCCGCAAACCTTTCGCCAGTACGACGGTAGATGTGCCTACGCCTGTCATTGGAATCGACACAGAATTTAGATTCATCAGTTTAAA---GAACCGATCTCCACTGATTAACCAATCATCTGCGATGTTGCAATACCTAGTGCAGATGTAAACGTCGATTGTTGTGCATAAGACGTG-CA-CGCAATACGGACGTCGGCAACGTATCC------------------GTTGCCTTACCATTCTGGCGCTAATGTGCCACTGAGTACATTCTTGTGTGTTGAGAGCA--GTTACGTGGGAAT-GAAATCGGTCACGCAGATGTGTCGAGGCGATT---------TGAC------------CTCGGCAGGTCGGCAACAGACC----CAG--CTGCAACA---------------AATTTCTGGCGTAAACACCGAATTGTGCCAACACTAACCCCGAAATCGTTCGCAACACGTAATGGTTG
gi|8 : AGTTTAAACATATATTATTACTAATGTTAC-------ACAT------ATTTAAC--A--TCA----CATG---------ATAATAC-ATAT-TTA-----TATATAACATACGCAAATGGAT----TGAA----CCTTAAGTTATAACA--A
gi|10 : tAGTTTAAACATATTTTATTACTTATGTTAC-------AGAT------AATTAAT--A--TCATAGTCATG---------TTAACAC-ATAT-TTA-----TATA
gi|13 : ttAGTTAAAACATATTTTATTACTAATGTTAC-------AGAT------AAATAAC--A--TCA----CATG---------ATAATAT-GTAT-TTA-----TATA
gi|11 : AGTTAAAACATATTTTATTACTAATGTTAC-------AGAT------AAATAAC--A--TCA----CATG---------ATAATAT-GTAT-TTA-----TATA
gi|12 : ttAGTTTAAACATACTTTATTACTTATGTTAC-------AGAT------ACTTAAC--A--TCA----CATT---------ATGCTAC-ATAA-TTA-----TATA
gi|14 : ttAGTTTAAACATATTTTATTTGCTATGTTGC-------AGTG------AATTAAC--A--TCA----CATG---------ATAGTGC-ATA
gi|16 : tAGTTTAAACATATTTTATTACTTAAGTTAC-------AGAT------AATTAAC--A--CCA----AATa
gi|7 : tttAGTTTAAACTTATTGTTTGACTTATGAAAG-------AGGG------AATAAAC--A--TCA----CATG---------ATAAAAC-ATGTGTTA------ATATAACATTCGCAA----AT----GGA------TTGAAATCCTAA-AGTACACT
gi|5 : gtttGTTCAAACATATTCTATAACATATGTAACAATATAGAGACATACAAAATTAACAACAGTGA----CGTG---------ATAACAA-AT-----------TATATAACGTATGCAA----ATGTAATGAA----CTACAAGTTATAt
gi|17 : ctgttatcttgtaaataaatgcacattgttttgtaacgtaaatttatatagtGTTTAAACATGATTTATTACTCATGTTAC-------ATAG------AATGAAC--A--TCA----CGTcc
gi|9 : GTTTACACATATTCTGTTACGTATGTTAC-------ATA----------TATC--C--ACA----CATACAACTGAACATAACACGATAC-CAAC----TATATAACATACGCAA----AT----GGAATGATCTACAAGTT
gi|6 : TAAACATCTTTTATGACGTATGCATC-------AGGG------TATGAAT--A--TCA----CAT----------AT--TAC-ATAT-TTACTCTATATATAACATAC--------------TGAA----CCATTAGTTATAGCA--ATATCAGTTACAGT
gi|15 : tttagcCA----CATG---------ATAAAAC-ATGT-GTA-----TATATAACATTTGCAA----AT----GGActaaaatgttatcaaaa
gi|2 : TCGTTGGAAAGAA-CAGCTCAATGCCAATTTTAAAGCGTGTATAGTTACGATGAATTTGATTTATTTATTTTATCACAATTGGCGTTTGAATTTACATACTGTATTTTTGACAATAACTCATTTTGTAAAAATGGCGCCTACTGTTGTAATGTTTAAATTTCAATATCGCGTGTGTCACCCGCGGGCATTAACCAGTGCAACACAACGTCGGAGCAGCGACAAGACGAGCCTTCGTAGAAATTGAGTCGGTAGTTGGTCCCATTCCTCTGCTATAGCAGCCCTAAGTTCATGATTTGTCCTGAGATTTCTGGCACGAACTCTCCGTTTCAA-ATAttgaaatcctaaagt
gi|2 : GAAGACGGTGCCATGGTGGAGGCGAATGATTGGAACAAA--AACTGGCTGGAGCACCTGGTCGATGTAACGCTGCGCCGTTAAACCACGTCCATATCATTTTCCAAACTCAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagacggtgccatggtggaggcgaatgattggaacaaaaactggctggagcacctggtcgatgtaacgctgcgccgttaaaccacgtccatatcattttccaaactcaa
gi|4 : tcgttggaaagaacagctcaatgccaattttaaagcgtgtatagttacgatgaatttgatttatttattttatcacaattggcgtttgaatttacatactgtatttttgacaataactcattttgtaaaaatggcgcctactgttgtaatgtttaaatttcaatatcgcgtgtgtcacccgcgggcattaaccagtgcaacacaacgtcggagcagcgacaagacgagccttcgtagaaattgagtcggtagttggtcccattcctctgctatagcagccctaagttcatgatttgtcctgagatttctggcacgaactctccgtttcaaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTCAACCACACAAGCGTCCGCAAACTTTTCACCAGTACGACGGTAGATGTGCCTACGCCGGTCATTGGAACCGA------ATTTAGATTCATCAGTGAAAAAAAGAACCGATCTCCACTGATTAACCAACTATCTGAGATGTTGCAATGCCCAGTGTAGACGTAAACGTCGATGGCTGTGCTAAAGATGTGTCC-CGCAATACGGGCGTCGGC
gi|3 : ACGTCGATGGCTGTGCTTAAAATGTG-CTTCGCAATACGGGCGTCGGCAAAGTATCCCGGCAGCAACTCTGACGCGTCGCCTGGCGGTTCTGGCGCTAATATGCAACCGAGTACGTCCT--TGTGTTGAGAGCAGTGTTACGTCGGACTAAAAATCGGTCTCGCAGATGTGTCAAGGCGATTTGCCGATCCTGACGTAATGTTATTTCTCG--AGGACGTC--CAGACCTCGACAGGTCGGCAACAGACCCAGTTGCAACAAATGTCTGGCGTAAATACCG---------AACACTAACCCCGAAATCGTTCACAACACGTAATAGTTG
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): CTGTTTACTATGTTAAAGTTGAACGTTTTAATC
Alignments
lowQualScore : 11111 11111111111 1111 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 2 2222 1 2 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 11 22 7777777777777777777777777777777777777777777777777777777777777777777777777777 555555 22222 3333 666666666666666666 22 11 1 333333333 444444444444 22 22 2222 11 555555555555555 888888888
lowQualScore : 77777 6666 6666 3 6666 6666 33 555 3 3 22222 0 44444444444 7777 1 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 4444 88 3 2 3 5 4 3 3 2 3 3 3 999 2 2 0 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 2 4 88 77 3 4 6666666666666666666666666666666666666666666666666666666666666666666666666666 2 777777 88888 3 1 3333 3 000000000000000000 2 2 3 77 88 2 2 5 4 666666666 777777777777 77 4 3 77 3333 88 2 333333333333333 2 000000000
lowQualScore : ..... .... .... . .... .... .. ... . . ..... . ........... .... . ............................................................................................ . .... .. . . . . . . . . . . . ... . . . ........................................................................................ . . .. .. . . ............................................................................ . ...... ..... . . .... . .................. . . . .. .. . . . . ......... ............ .. . . .. .... .. . ............... . .........
lowQualScore : 77777 5555 5555 1 5555 1111 99 888 3 6 77777 6 11111111111 0000 4 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 5555 00 0 5 0 5 0 0 0 5 0 0 0 000 5 5 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 55 55 0 0 0000000000000000000000000000000000000000000000000000000000000000000000000000 5 555555 00000 0 0 3333 0 555555555555555555 5 5 0 55 00 5 5 5 0 555555555 555555555555 55 0 0 55 5555 00 5 555555555555555 5 000000000
consensus : AGTTTAAACATATTTTATTACTTATGT-----TACAGA----TA----ATTA-ACA----TCA----CA--TG---ATAATAC-ATAT-TTA-----TATATAACATACGCAA----ATG----GAA----CTATAAGTTATAACAACACCAGTTACAGTTCTCTCTATATCATCAATATCAAAAGTCTTGTCCATCTATATTAAATATAAATATCTCCACTCAGAGGCAACCGATTTTTATACATTTGGTATCGTTGGAAAGAAACAGCTCAATGCCAATTTTAAAGCGTGTNNAGTTNCGATGAATTTNATTTATTNATTTTATCACANTTGGCGTCTGAATTTACNTACTGTATTTTTGACAATAACTCATTTTGTAAAAATGGCGCCTACTGTTGTNATGTTTAAATTTCAATATCGNGTGTGTCNCCCGCGGGCANCGACCAGTGCAACACGACGTCGGNGNNNCGACAAGACGAGCCTTCGTAGAAATTGAGTCGGTAGTTGGTCCCATTCCTCTGCTATAGCANCCCTAAGTTCATGATTTGTCCTGAGATTTCTGGCACGAACTCTCCNTTTCAATATAGTGCAGGCCATGGCAGTACATCAATGTTATTTGCCGTCAGGAAGTTTGTTGTGAGTCTCGCACTATGGGGCCATGCGTTGTCTTATTGGAAGACGGTGCCATGGTGGAGGCNAATGANTGGAACAGACCAACTGGCTGGAGCACCTGGTCGATGTAACGCTGCGCCGTTAAACCACGTCCATGTCNTTTTCCAAACNCAAGGAAGACCAGTCTGGTTTTGTGGTCAGCCATATATCCAGCCAACACCATTGCCCTAGGCCCACCCCACCTATCTGACTCGACCACACAGGCGTCCGCAAACCTTTCGCCAGTACGACGGTAGATGTGCCTACGCCNGTCATTGGAACCGACACAGAATTTAGATTCATCAGTNAAANAAAGAACCGATCTCCACTGATTAACCAACCATCTGNGATGTTGCAATGCCCAGTGCAGACGTAAACGTCGATGGCTGTGCTTAAGACGTG-CC-CGCAATACGGGCGTCGGCAANGTATCCCGGCAGCAACTCTGACGCGTCGCCTNGCCGTTCTGGCGCTAATGTGCNACCGAGTACGTCCTTGTGTGTTGAGAGCAGTGTTACGTNGGANTAGAAATCGGTCNCGCAGATGTGTCGAGGCGATTTGCCGATCCTGACGTAATGTTATTTCTCGGCAGGNCGNCAACAGACCTCGACAGGTCNGCAACAGACCCAGTTGCAACAAATNTCTGGCGTAAACACCGAATTGTGCCAACACTAACCCCGAAATCGTTCGCAACACGTAATGGTTG
Reference ( family-1018 ) : AGTTTAAACATATTTTATTACTTATGT-----TACAGA----TA----ATTA-ACA----TCA----CA--TG---ATAATAC-ATAT-TTA-----TATATAACATACGCAA----ATN----GAA----CTACAAGTTATAACAACACCAGTTACAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTTGGAAAGAA-CAGCTCAATGCCAATTTTAAAGCGTGTATAGTTACGATGAATTTGATTTATTTATTTTATCACAATTGGCGTTTGAATTTACATACTGTATTTTTGACAATAACTCATTTTGTAAAAATGGCGCCTACTGTTGTAATGTTTAAATTTCAATATCGCGTGTGTCACCCGCGGGCATTAACCAGTGCAACACAACGTCGGAGCAGCGACAAGACGAGCCTTCGTAGAAATTGAGTCGGTAGTTGGTCCCATTCCTCTGCTATAGCAGCCCTAAGTTCATGATTTGTCCTGAGATTTCTGGCACGAACTCTCCGTTTCAA-ATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGACGGTGCCATGGTGGAGGCGAATGATTGGAACAAA--AACTGGCTGGAGCACCTGGTCGATGTAACGCTGCGCCGTTAAACCACGTCCATATCATTTTCCAAACTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCAACCACACAAGCGTCCGCAAACTTTTCACCAGTACGACGGTAGATGTGCCTACGCCGGTCATTGGAACC------GAATTTAGATTCATCAGTGAAAAAAAGAACCGATCTCCACTGATTAACCAACTATCTGAGATGTTGCAATGCCCAGTGTAGACGTAAACGTCGATGGCTGTGCTNAAGATGTGTCCTCGCAATACGGGCGTCGGCAAAGTATCCCGGCAGCAACTCTGACGCGTCGCCTGGCGGTTCTGGCGCTAATATGCAACCGAGTACGTCCT--TGTGTTGAGAGCAGTGTTACGTCGGACTAAAAATCGGTCTCGCAGATGTGTCAAGGCGATTTGCCGATCCTGACGTAATGTTATTTCTCG--AGGACGTC--CAGACCTCGACAGGTCGGCAACAGACCCAGTTGCAACAAATGTCTGGCGTAAATACCG---------AACACTAACCCCGAAATCGTTCACAACACGTAATAGTTG
gi|1 : AGTTTAAACATATTTTATTACTTATGT-----AACAGA----CA----GTTA-ACC----TCA----CA--TG---ATAATAC-ATAT-TTA-----TATATAACATGCACAA----ATT----GAA----CTTTAAGTTATAACAACACTAGTTACAGTTCTCTCTATATCATCAATATCAAAAGTCTTGTCCATCTATATTAAATATAAATATCTCCACTCAGAGGCAACCGATTTTTATACATTTGGTATCGTTGGAAAAAAACAGCTCAATGCCAAT----AAGCGTGTTAAGTTCTGATGAATTTTATTTATTGATTT-ATCACATTTGGTGTCTGAATTTACCTACTGTATTTTTGACAATAACTTATTTTGTAAAAATGGCACCTACTGTTATCATGTTTAAATTTCAATATCGGGTGTGTCCCCCATGGGCAGCGACCAATGCAACACGACGTCGGCGATTCGACAAGACAAGCTTTTGTAGAAATTGAGTCGGTAGTTGGTCCCATTCCTTTGCTATAGCATTCTTAAGTTCATGATTTGTCCTGAGATTTCTGGCACGAACTCTCCTTTTCAATATAGTGCAGGCCATGGCAGTACATCAATGTTATTTGCCGTCAGGAAGTTTGTTGTGAGTCTCGCACTATGGGGCCATGCGTTGTCTTATTGGAAGATGGTGCCATAGTGGAGGCCAATGAATGG--CAGACCAACTGGCTGGAGCACCTGGTTGATGTAACGTTGCGCCGTTAAACCACATCCATGTCCTTTTCCAAACACAAGGAAGACCAGTCTGGTTTTGTGGTCAGCCATATATCCAGCCAACACCATTGCCCTAGGCCCACCCCACCTATCTGACTCGACCACATAGGCATCCGCAAACCTTTCGCCAGTACGACGGTAGATGTGCCTACGCCTGTCATTGGAATCGACACAGAATTTAGATTCATCAGTT---TAAAGAACCGATCTCCACTGATTAACCAATCATCTGCGATGTTGCAATACCTAGTGCAGATGTAAACGTCGATTGTTGTGCATAAGACGTG--CACGCAATACGGACGTCGGCAACGTATC------------------CGTTGCCTTACCATTCTGGCGCTAATGTGCCACTGAGTACATTCTTGTGTGTTGAGAGCA--GTTACGTGGGAAT-GAAATCGGTCACGCAGATGTGTCGAGGCGATT---------TGAC------------CTCGGCAGGTCGGCAACAGACC----CAG--CTGCAACA---------------AATTTCTGGCGTAAACACCGAATTGTGCCAACACTAACCCCGAAATCGTTCGCAACACGTAATGGTTG
gi|10 : AGTTTAAACATATTTTATTACTTATGT-----TACAGA----TA----ATTA-ATA----TCATAGTCA--TG---TTAACAC-ATAT-TTA-----TATA
gi|11 : ttAGTTAAAACATATTTTATTACTAATGT-----TACAGA----TA----AATA-ACA----TCA----CA--TG---ATAATAT-GTAT-TTA-----TATA
gi|12 : ttAGTTTAAACATACTTTATTACTTATGT-----TACAGA----TA----CTTA-ACA----TCA----CA--TT---ATGCTAC-ATAA-TTA-----TATA
gi|13 : ttAGTTAAAACATATTTTATTACTAATGT-----TACAGA----TA----AATA-ACA----TCA----CA--TG---ATAATAT-GTAT-TTA-----TATA
gi|14 : AGTTTAAACATATTTTATTTGCTATGT-----TGCAGT----GA----ATTA-ACA----TCA----CA--TG---ATAGTGC-ATA
gi|15 : tCA----CA--TG---ATAAAAC-ATGT-GTA-----TATATAACATTTGCAA----ATG----GAa
gi|16 : AGTTTAAACATATTTTATTACTTAAGT-----TACAGA----TA----ATTA-ACA----CCA----AA--Tttgaaatcctaaagt
gi|17 : tttGTTTAAACATGATTTATTACTCATGT-----TACATA----GA----ATGA-ACA----TCA----CG--T
gi|2 : TCGTTGGAAAGAA-CAGCTCAATGCCAATTTTAAAGCGTGTATAGTTACGATGAATTTGATTTATTTATTTTATCACAATTGGCGTTTGAATTTACATACTGTATTTTTGACAATAACTCATTTTGTAAAAATGGCGCCTACTGTTGTAATGTTTAAATTTCAATATCGCGTGTGTCACCCGCGGGCATTAACCAGTGCAACACAACGTCGGAGCAGCGACAAGACGAGCCTTCGTAGAAATTGAGTCGGTAGTTGGTCCCATTCCTCTGCTATAGCAGCCCTAAGTTCATGATTTGTCCTGAGATTTCTGGCACGAACTCTCCGTTTCAA-ATA
gi|2 : GAAGACGGTGCCATGGTGGAGGCGAATGATTGGAACAAA--AACTGGCTGGAGCACCTGGTCGATGTAACGCTGCGCCGTTAAACCACGTCCATATCATTTTCCAAACTCAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagacggtgccatggtggaggcgaatgattggaacaaaaactggctggagcacctggtcgatgtaacgctgcgccgttaaaccacgtccatatcattttccaaactcaa
gi|3 : tcgttggaaagaacagctcaatgccaattttaaagcgtgtatagttacgatgaatttgatttatttattttatcacaattggcgtttgaatttacatactgtatttttgacaataactcattttgtaaaaatggcgcctactgttgtaatgtttaaatttcaatatcgcgtgtgtcacccgcgggcattaaccagtgcaacacaacgtcggagcagcgacaagacgagccttcgtagaaattgagtcggtagttggtcccattcctctgctatagcagccctaagttcatgatttgtcctgagatttctggcacgaactctccgtttcaaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACGTCGATGGCTGTGCTTAAAATGTG-CTTCGCAATACGGGCGTCGGCAAAGTATCCCGGCAGCAACTCTGACGCGTCGCCTGGCGGTTCTGGCGCTAATATGCAACCGAGTACGTCCT--TGTGTTGAGAGCAGTGTTACGTCGGACTAAAAATCGGTCTCGCAGATGTGTCAAGGCGATTTGCCGATCCTGACGTAATGTTATTTCTCG--AGGACGTC--CAGACCTCGACAGGTCGGCAACAGACCCAGTTGCAACAAATGTCTGGCGTAAATACCG---------AACACTAACCCCGAAATCGTTCACAACACGTAATAGTTG
gi|4 : CTCAACCACACAAGCGTCCGCAAACTTTTCACCAGTACGACGGTAGATGTGCCTACGCCGGTCATTGGAACC------GAATTTAGATTCATCAGTGAAAAAAAGAACCGATCTCCACTGATTAACCAACTATCTGAGATGTTGCAATGCCCAGTGTAGACGTAAACGTCGATGGCTGTGCTAAAGATGTGTCC-CGCAATACGGGCGTCGGC
gi|5 : GTTCAAACATATTCTATAACATATGTAACAATATAGAGACATACAAAATTA-ACAACAGTGA----CG--TG---ATAACAA-AT-----------TATATAACGTATGCAA----ATGTAATGAA----CTACAAGTTATA
gi|6 : ctgttatcttgtaaataaatgcacattgttttgtaacgtaaatttatatagtTAAACATCTTTTATGACGTATGC-----ATCAGG----GT----ATGA-ATA----TCA----CA--T----AT--TAC-ATAT-TTACTCTATATATAACATAC----------T----GAA----CCATTAGTTATAGCAATATCAGTTACAGTcc
gi|7 : tttagcAGTTTAAACTTATTGTTTGACTTATGA-----AAGAGG----GA----ATAA-ACA----TCA----CA--TG---ATAAAAC-ATGTGTTA------ATATAACATTCGCAA----ATG----GActaaaatgttatcaaaa
gi|8 : gtttAGTTTAAACATATATTATTACTAATGT-----TACACA----TA----TTTA-ACA----TCA----CA--TG---ATAATAC-ATAT-TTA-----TATATAACATACGCAAATGGATT----GAA----CCTTAAGTTATAACAAttgaaatcctaaagtacactt
gi|9 : tGTTTACACATATTCTGTTACGTATGT-----TACATA----TA----TCCACACA----T-A----CAACTGAACATAACACGATAC-CAAC----TATATAACATACGCAA----ATG----GAATGATCTACAAGTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): CTGTTTACTATGTTAAAGTTGAACGTTTTAATC
Alignments
lowQualScore : 111111111111111111111
lowQualScore : 11111 2222 1111 1 2222 1 1 11 11 222222 22222 2222 666666666666666666 11 11 1 333333333 444444444444 11 111111111111111111111 333333333
lowQualScore : 77777 6666 6666 3 6666 6666 33 555 3 3 22222 0 4444 7777 1 5 4444 22 1 1 1 5 1 1 1 1 1 1 1 333 1 1 5 1 1 88 77 1 1 1 999999 33333 1 0 0000 1 000000000000000000 1 2 1 88 88 1 1 5 1 666666666 777777777777 77 1 666666666666666666666 1 777777777
lowQualScore : ..... .... .... . .... .... .. ... . . ..... . .... .... . . .... .. . . . . . . . . . . . ... . . . . . .. .. . . . ...... ..... . . .... . .................. . . . .. .. . . . . ......... ............ .. . ..................... . .........
lowQualScore : 77777 5555 5555 1 5555 1111 99 888 3 6 77777 6 3333 0000 4 5 5555 00 0 0 0 5 0 0 0 0 0 0 0 000 0 0 5 0 0 55 55 0 0 0 000000 55555 0 7 3333 0 555555555555555555 0 5 0 00 00 0 0 5 0 555555555 555555555555 55 0 555555555555555555555 0 555555555
consensus : AGTTTAAACATATTTTATTACTTATGT-----TACAGA----TA----ATTA-ACA----TCA----CA--TG---ATAATAC-ATAT-TTA-----TATATAACATACGCAAATG----GAA----CTATAAGTTATAACAACACCAGTTACAGTTCTCTCTATATCATCAATATCAAAAGTCTTGTCCATCTATATTAAATATAAATATCTCCACTCAGAGGCAACCGATTTTTATACATTTGGTATCGTTGGAAAGAAACAGCTCAATGCCAATTTTAAAGCGTGTNNAGTTNCGATGAATTTNATTTATTNATTTTATCACANTTGGCGTCTGAATTTACNTACTGTATTTTTGACAATAACTCATTTTGTAAAAATGGCGCCTACTGTTGTNATGTTTAAATTTCAATATCGNGTGTGTCNCCCGCGGGCANCGACCAGTGCAACACGACGTCGGNGNNNCGACAAGACGAGCCTTCGTAGAAATTGAGTCGGTAGTTGGTCCCATTCCTCTGCTATAGCANCCCTAAGTTCATGATTTGTCCTGAGATTTCTGGCACGAACTCTCCNTTTCAATATAGTGCAGGCCATGGCAGTACATCAATGTTATTTGCCGTCAGGAAGTTTGTTGTGAGTCTCGCACTATGGGGCCATGCGTTGTCTTATTGGAAGACGGTGCCATGGTGGAGGCNAATGANTGGAACAGACCAACTGGCTGGAGCACCTGGTCGATGTAACGCTGCGCCGTTAAACCACGTCCATGTCNTTTTCCAAACNCAAGGAAGACCAGTCTGGTTTTGTGGTCAGCCATATATCCAGCCAACACCATTGCCCTAGGCCCACCCCACCTATCTGACTCGACCACACAGGCGTCCGCAAACCTTTCGCCAGTACGACGGTAGATGTGCCTACGCCNGTCATTGGAACCGACACAGAATTTAGATTCATCAGTNAAANAAAGAACCGATCTCCACTGATTAACCAACCATCTGNGATGTTGCAATGCCCAGTGCAGACGTAAACGTCGATGGCTGTGCTTAAGACGTG-CN-CGCAATACGGGCGTCGGCAANGTATCCCGGCAGCAACTCTGACGCGTCGCCTNGCCGTTCTGGCGCTAATGTGCNACCGAGTACGTCCTTGTGTGTTGAGAGCAGTGTTACGTNGGANTAGAAATCGGTCNCGCAGATGTGTCGAGGCGATTTGCCGATCCTGACGTAATGTTATTTCTCGGCAGGNCGTC--CAGACCTCGACAGGTCGGCAACAGACCCAGCTGCAACAAATNTCTGGCGTAAACACCGAATTGTGCCAACACTAACCCCGAAATCGTTCGCAACACGTAATGGTTG
Reference ( family-1018 ) : AGTTTAAACATATTTTATTACTTATGT-----TACAGA----TA----ATTA-ACA----TCA----CA--TG---ATAATAC-ATAT-TTA-----TATATAACATACGCAAATG----GAA----CTATAAGTTATAACAACACCAGTTACAGTTCTCTCTATATCATCAATATCAAAAGTCTTGTCCATCTATATTAAATATAAATATCTCCACTCAGAGGCAACCGATTTTTATACATTTGGTATCGTTGGAAAGAAACAGCTCAATGCCAATTTTAAAGCGTGTNNAGTTNCGATGAATTTNATTTATTNATTTTATCACANTTGGCGTCTGAATTTACNTACTGTATTTTTGACAATAACTCATTTTGTAAAAATGGCGCCTACTGTTGTNATGTTTAAATTTCAATATCGNGTGTGTCNCCCGCGGGCANCGACCAGTGCAACACGACGTCGGNGNNNCGACAAGACGAGCCTTCGTAGAAATTGAGTCGGTAGTTGGTCCCATTCCTCTGCTATAGCANCCCTAAGTTCATGATTTGTCCTGAGATTTCTGGCACGAACTCTCCNTTTCAATATAGTGCAGGCCATGGCAGTACATCAATGTTATTTGCCGTCAGGAAGTTTGTTGTGAGTCTCGCACTATGGGGCCATGCGTTGTCTTATTGGAAGACGGTGCCATGGTGGAGGCNAATGANTGGAACAGACCAACTGGCTGGAGCACCTGGTCGATGTAACGCTGCGCCGTTAAACCACGTCCATGTCNTTTTCCAAACNCAAGGAAGACCAGTCTGGTTTTGTGGTCAGCCATATATCCAGCCAACACCATTGCCCTAGGCCCACCCCACCTATCTGACTCGACCACACAGGCGTCCGCAAACCTTTCGCCAGTACGACGGTAGATGTGCCTACGCCNGTCATTGGAACCGACACAGAATTTAGATTCATCAGTNAAANAAAGAACCGATCTCCACTGATTAACCAACCATCTGNGATGTTGCAATGCCCAGTGCAGACGTAAACGTCGATGGCTGTGCTTAAGACGTG-CC-CGCAATACGGGCGTCGGCAANGTATCCCGGCAGCAACTCTGACGCGTCGCCTNGCCGTTCTGGCGCTAATGTGCNACCGAGTACGTCCTTGTGTGTTGAGAGCAGTGTTACGTNGGANTAGAAATCGGTCNCGCAGATGTGTCGAGGCGATTTGCCGATCCTGACGTAATGTTATTTCTCGGCAGGNCGNCAACAGACCTCGACAGGTCNGCAACAGACCCAGTTGCAACAAATNTCTGGCGTAAACACCGAATTGTGCCAACACTAACCCCGAAATCGTTCGCAACACGTAATGGTTG
gi|1 : AGTTTAAACATATTTTATTACTTATGT-----AACAGA----CA----GTTA-ACC----TCA----CA--TG---ATAATAC-ATAT-TTA-----TATATAACATGCACAAATT----GAA----CTTTAAGTTATAACAACACTAGTTACAGTTCTCTCTATATCATCAATATCAAAAGTCTTGTCCATCTATATTAAATATAAATATCTCCACTCAGAGGCAACCGATTTTTATACATTTGGTATCGTTGGAAAAAAACAGCTCAATGCCAAT----AAGCGTGTTAAGTTCTGATGAATTTTATTTATTGATTT-ATCACATTTGGTGTCTGAATTTACCTACTGTATTTTTGACAATAACTTATTTTGTAAAAATGGCACCTACTGTTATCATGTTTAAATTTCAATATCGGGTGTGTCCCCCATGGGCAGCGACCAATGCAACACGACGTCGGCGATTCGACAAGACAAGCTTTTGTAGAAATTGAGTCGGTAGTTGGTCCCATTCCTTTGCTATAGCATTCTTAAGTTCATGATTTGTCCTGAGATTTCTGGCACGAACTCTCCTTTTCAATATAGTGCAGGCCATGGCAGTACATCAATGTTATTTGCCGTCAGGAAGTTTGTTGTGAGTCTCGCACTATGGGGCCATGCGTTGTCTTATTGGAAGATGGTGCCATAGTGGAGGCCAATGAATGG--CAGACCAACTGGCTGGAGCACCTGGTTGATGTAACGTTGCGCCGTTAAACCACATCCATGTCCTTTTCCAAACACAAGGAAGACCAGTCTGGTTTTGTGGTCAGCCATATATCCAGCCAACACCATTGCCCTAGGCCCACCCCACCTATCTGACTCGACCACATAGGCATCCGCAAACCTTTCGCCAGTACGACGGTAGATGTGCCTACGCCTGTCATTGGAATCGACACAGAATTTAGATTCATCAGTT---TAAAGAACCGATCTCCACTGATTAACCAATCATCTGCGATGTTGCAATACCTAGTGCAGATGTAAACGTCGATTGTTGTGCATAAGACGTG-CA-CGCAATACGGACGTCGGCAACGTATCC------------------GTTGCCTTACCATTCTGGCGCTAATGTGCCACTGAGTACATTCTTGTGTGTTGAGAGCA--GTTACGTGGGAAT-GAAATCGGTCACGCAGATGTGTCGAGGCGATT---------TGAC------------CTCGGCAGGTCG---------------------GCAACAGACCCAGCTGCAACAAATTTCTGGCGTAAACACCGAATTGTGCCAACACTAACCCCGAAATCGTTCGCAACACGTAATGGTTG
gi|10 : AGTTTAAACATATTTTATTACTTATGT-----TACAGA----TA----ATTA-ATA----TCATAGTCA--TG---TTAACAC-ATAT-TTA-----TATA
gi|11 : ttAGTTAAAACATATTTTATTACTAATGT-----TACAGA----TA----AATA-ACA----TCA----CA--TG---ATAATAT-GTAT-TTA-----TATA
gi|12 : ttAGTTTAAACATACTTTATTACTTATGT-----TACAGA----TA----CTTA-ACA----TCA----CA--TT---ATGCTAC-ATAA-TTA-----TATA
gi|13 : ttAGTTAAAACATATTTTATTACTAATGT-----TACAGA----TA----AATA-ACA----TCA----CA--TG---ATAATAT-GTAT-TTA-----TATA
gi|14 : AGTTTAAACATATTTTATTTGCTATGT-----TGCAGT----GA----ATTA-ACA----TCA----CA--TG---ATAGTGC-ATA
gi|15 : tCA----CA--TG---ATAAAAC-ATGT-GTA-----TATATAACATTTGCAAATG----GAa
gi|16 : AGTTTAAACATATTTTATTACTTAAGT-----TACAGA----TA----ATTA-ACA----CCA----AA--Tttgaaatcctaaagt
gi|17 : tttGTTTAAACATGATTTATTACTCATGT-----TACATA----GA----ATGA-ACA----TCA----CG--T
gi|2 : TCGTTGGAAAGAA-CAGCTCAATGCCAATTTTAAAGCGTGTATAGTTACGATGAATTTGATTTATTTATTTTATCACAATTGGCGTTTGAATTTACATACTGTATTTTTGACAATAACTCATTTTGTAAAAATGGCGCCTACTGTTGTAATGTTTAAATTTCAATATCGCGTGTGTCACCCGCGGGCATTAACCAGTGCAACACAACGTCGGAGCAGCGACAAGACGAGCCTTCGTAGAAATTGAGTCGGTAGTTGGTCCCATTCCTCTGCTATAGCAGCCCTAAGTTCATGATTTGTCCTGAGATTTCTGGCACGAACTCTCCGTTTCAA-ATA
gi|2 : GAAGACGGTGCCATGGTGGAGGCGAATGATTGGAACAAA--AACTGGCTGGAGCACCTGGTCGATGTAACGCTGCGCCGTTAAACCACGTCCATATCATTTTCCAAACTCAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagacggtgccatggtggaggcgaatgattggaacaaaaactggctggagcacctggtcgatgtaacgctgcgccgttaaaccacgtccatatcattttccaaactcaa
gi|3 : tcgttggaaagaacagctcaatgccaattttaaagcgtgtatagttacgatgaatttgatttatttattttatcacaattggcgtttgaatttacatactgtatttttgacaataactcattttgtaaaaatggcgcctactgttgtaatgtttaaatttcaatatcgcgtgtgtcacccgcgggcattaaccagtgcaacacaacgtcggagcagcgacaagacgagccttcgtagaaattgagtcggtagttggtcccattcctctgctatagcagccctaagttcatgatttgtcctgagatttctggcacgaactctccgtttcaaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACGTCGATGGCTGTGCTTAAAATGTG-CTTCGCAATACGGGCGTCGGCAAAGTATCCCGGCAGCAACTCTGACGCGTCGCCTGGCGGTTCTGGCGCTAATATGCAACCGAGTACGTCCT--TGTGTTGAGAGCAGTGTTACGTCGGACTAAAAATCGGTCTCGCAGATGTGTCAAGGCGATTTGCCGATCCTGACGTAATGTTATTTCTCG--AGGACGTC--CAGACCTCGACAGGTCGGCAACAGACCCAGTTGCAACAAATGTCTGGCGTAAATACCG---------AACACTAACCCCGAAATCGTTCACAACACGTAATAGTTG
gi|4 : CTCAACCACACAAGCGTCCGCAAACTTTTCACCAGTACGACGGTAGATGTGCCTACGCCGGTCATTGGAACCGA------ATTTAGATTCATCAGTGAAAAAAAGAACCGATCTCCACTGATTAACCAACTATCTGAGATGTTGCAATGCCCAGTGTAGACGTAAACGTCGATGGCTGTGCTAAAGATGTGTCC-CGCAATACGGGCGTCGGC
gi|5 : GTTCAAACATATTCTATAACATATGTAACAATATAGAGACATACAAAATTA-ACAACAGTGA----CG--TG---ATAACAA-AT-----------TATATAACGTATGCAAATGTAATGAA----CTACAAGTTATA
gi|6 : ctgttatcttgtaaataaatgcacattgttttgtaacgtaaatttatatagtTAAACATCTTTTATGACGTATGC-----ATCAGG----GT----ATGA-ATA----TCA----CA--T----AT--TAC-ATAT-TTACTCTATATATAACATAC-----TG-----AA----CCATTAGTTATAGCAATATCAGTTACAGTcc
gi|7 : tttagcAGTTTAAACTTATTGTTTGACTTATGA-----AAGAGG----GA----ATAA-ACA----TCA----CA--TG---ATAAAAC-ATGTGTTA------ATATAACATTCGCAAATG----GActaaaatgttatcaaaa
gi|8 : gtttAGTTTAAACATATATTATTACTAATGT-----TACACA----TA----TTTA-ACA----TCA----CA--TG---ATAATAC-ATAT-TTA-----TATATAACATACGCAAATGGATTGAA----CCTTAAGTTATAACAAttgaaatcctaaagtacactt
gi|9 : tGTTTACACATATTCTGTTACGTATGT-----TACATA----TA----TCCACACA----T-A----CAACTGAACATAACACGATAC-CAAC----TATATAACATACGCAAATG----GAATGATCTACAAGTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): CTGTTTACTATGTTAAAGTTGAACGTTTTAATC
Alignments
lowQualScore : 11111 2222 1111 1 2222 1 1 11 11 222222 22222 1111 666666666666666666 11 11 1 333333333 444444444444 11 6666666666666666666 333333333
lowQualScore : 77777 6666 6666 3 6666 6666 33 555 3 3 22222 0 4444 7777 1 5 4444 22 1 1 1 5 1 1 1 1 1 1 1 333 1 1 5 1 1 88 77 1 1 1 999999 33333 1 0 7777 1 000000000000000000 1 2 1 88 88 1 1 5 1 666666666 777777777777 77 1 3333333333333333333 1 777777777
lowQualScore : ..... .... .... . .... .... .. ... . . ..... . .... .... . . .... .. . . . . . . . . . . . ... . . . . . .. .. . . . ...... ..... . . .... . .................. . . . .. .. . . . . ......... ............ .. . ................... . .........
lowQualScore : 77777 5555 5555 1 5555 1111 99 888 3 6 77777 6 3333 0000 4 5 5555 00 0 0 0 5 0 0 0 0 0 0 0 000 0 0 5 0 0 55 55 0 0 0 000000 55555 0 7 7777 0 555555555555555555 0 5 0 00 00 0 0 5 0 555555555 555555555555 55 0 5555555555555555555 0 555555555
consensus : AGTTTAAACATATTTTATTACTTATGT-----TACAGA----TA----ATTA-ACA----TCA----CA--TG---ATAATAC-ATAT-TTA-----TATATAACATACGCAAATG----GAA----CTATAAGTTATAACAACACCAGTTACAGTTCTCTCTATATCATCAATATCAAAAGTCTTGTCCATCTATATTAAATATAAATATCTCCACTCAGAGGCAACCGATTTTTATACATTTGGTATCGTTGGAAAGAAACAGCTCAATGCCAATTTTAAAGCGTGTNNAGTTNCGATGAATTTNATTTATTNATTTTATCACANTTGGCGTCTGAATTTACNTACTGTATTTTTGACAATAACTCATTTTGTAAAAATGGCGCCTACTGTTGTNATGTTTAAATTTCAATATCGNGTGTGTCNCCCGCGGGCANCGACCAGTGCAACACGACGTCGGNGNNNCGACAAGACGAGCCTTCGTAGAAATTGAGTCGGTAGTTGGTCCCATTCCTCTGCTATAGCANCCCTAAGTTCATGATTTGTCCTGAGATTTCTGGCACGAACTCTCCNTTTCAATATAGTGCAGGCCATGGCAGTACATCAATGTTATTTGCCGTCAGGAAGTTTGTTGTGAGTCTCGCACTATGGGGCCATGCGTTGTCTTATTGGAAGACGGTGCCATGGTGGAGGCNAATGANTGGAACAGACCAACTGGCTGGAGCACCTGGTCGATGTAACGCTGCGCCGTTAAACCACGTCCATGTCNTTTTCCAAACNCAAGGAAGACCAGTCTGGTTTTGTGGTCAGCCATATATCCAGCCAACACCATTGCCCTAGGCCCACCCCACCTATCTGACTCGACCACACAGGCGTCCGCAAACCTTTCGCCAGTACGACGGTAGATGTGCCTACGCCNGTCATTGGAACCGACACAGAATTTAGATTCATCAGTNAAANAAAGAACCGATCTCCACTGATTAACCAACCATCTGNGATGTTGCAATGCCCAGTGCAGACGTAAACGTCGATGGCTGTGCTTAAGACGTG-CN-CGCAATACGGGCGTCGGCAANGTATCCCGGCAGCAACTCTGACGCGTCGCCTNGCCGTTCTGGCGCTAATGTGCNACCGAGTACGTCCTTGTGTGTTGAGAGCAGTGTTACGTNGGANTAGAAATCGGTCNCGCAGATGTGTCGAGGCGATTTGCCGATCCTGACGTAATGTTATTTCTCGGCAGGNCGTCCAGACCTCGACAGGTCGGCAACAGACCCAGCTGCAACAAATNTCTGGCGTAAACACCGAATTGTGCCAACACTAACCCCGAAATCGTTCGCAACACGTAATGGTTG
Reference ( family-1018 ) : AGTTTAAACATATTTTATTACTTATGT-----TACAGA----TA----ATTA-ACA----TCA----CA--TG---ATAATAC-ATAT-TTA-----TATATAACATACGCAAATG----GAA----CTATAAGTTATAACAACACCAGTTACAGTTCTCTCTATATCATCAATATCAAAAGTCTTGTCCATCTATATTAAATATAAATATCTCCACTCAGAGGCAACCGATTTTTATACATTTGGTATCGTTGGAAAGAAACAGCTCAATGCCAATTTTAAAGCGTGTNNAGTTNCGATGAATTTNATTTATTNATTTTATCACANTTGGCGTCTGAATTTACNTACTGTATTTTTGACAATAACTCATTTTGTAAAAATGGCGCCTACTGTTGTNATGTTTAAATTTCAATATCGNGTGTGTCNCCCGCGGGCANCGACCAGTGCAACACGACGTCGGNGNNNCGACAAGACGAGCCTTCGTAGAAATTGAGTCGGTAGTTGGTCCCATTCCTCTGCTATAGCANCCCTAAGTTCATGATTTGTCCTGAGATTTCTGGCACGAACTCTCCNTTTCAATATAGTGCAGGCCATGGCAGTACATCAATGTTATTTGCCGTCAGGAAGTTTGTTGTGAGTCTCGCACTATGGGGCCATGCGTTGTCTTATTGGAAGACGGTGCCATGGTGGAGGCNAATGANTGGAACAGACCAACTGGCTGGAGCACCTGGTCGATGTAACGCTGCGCCGTTAAACCACGTCCATGTCNTTTTCCAAACNCAAGGAAGACCAGTCTGGTTTTGTGGTCAGCCATATATCCAGCCAACACCATTGCCCTAGGCCCACCCCACCTATCTGACTCGACCACACAGGCGTCCGCAAACCTTTCGCCAGTACGACGGTAGATGTGCCTACGCCNGTCATTGGAACCGACACAGAATTTAGATTCATCAGTNAAANAAAGAACCGATCTCCACTGATTAACCAACCATCTGNGATGTTGCAATGCCCAGTGCAGACGTAAACGTCGATGGCTGTGCTTAAGACGTG-CN-CGCAATACGGGCGTCGGCAANGTATCCCGGCAGCAACTCTGACGCGTCGCCTNGCCGTTCTGGCGCTAATGTGCNACCGAGTACGTCCTTGTGTGTTGAGAGCAGTGTTACGTNGGANTAGAAATCGGTCNCGCAGATGTGTCGAGGCGATTTGCCGATCCTGACGTAATGTTATTTCTCGGCAGGNCGTCCAGACCTCGACAGGTCGGCAACAGACCCAGCTGCAACAAATNTCTGGCGTAAACACCGAATTGTGCCAACACTAACCCCGAAATCGTTCGCAACACGTAATGGTTG
gi|1 : AGTTTAAACATATTTTATTACTTATGT-----AACAGA----CA----GTTA-ACC----TCA----CA--TG---ATAATAC-ATAT-TTA-----TATATAACATGCACAAATT----GAA----CTTTAAGTTATAACAACACTAGTTACAGTTCTCTCTATATCATCAATATCAAAAGTCTTGTCCATCTATATTAAATATAAATATCTCCACTCAGAGGCAACCGATTTTTATACATTTGGTATCGTTGGAAAAAAACAGCTCAATGCCAAT----AAGCGTGTTAAGTTCTGATGAATTTTATTTATTGATTT-ATCACATTTGGTGTCTGAATTTACCTACTGTATTTTTGACAATAACTTATTTTGTAAAAATGGCACCTACTGTTATCATGTTTAAATTTCAATATCGGGTGTGTCCCCCATGGGCAGCGACCAATGCAACACGACGTCGGCGATTCGACAAGACAAGCTTTTGTAGAAATTGAGTCGGTAGTTGGTCCCATTCCTTTGCTATAGCATTCTTAAGTTCATGATTTGTCCTGAGATTTCTGGCACGAACTCTCCTTTTCAATATAGTGCAGGCCATGGCAGTACATCAATGTTATTTGCCGTCAGGAAGTTTGTTGTGAGTCTCGCACTATGGGGCCATGCGTTGTCTTATTGGAAGATGGTGCCATAGTGGAGGCCAATGAATGG--CAGACCAACTGGCTGGAGCACCTGGTTGATGTAACGTTGCGCCGTTAAACCACATCCATGTCCTTTTCCAAACACAAGGAAGACCAGTCTGGTTTTGTGGTCAGCCATATATCCAGCCAACACCATTGCCCTAGGCCCACCCCACCTATCTGACTCGACCACATAGGCATCCGCAAACCTTTCGCCAGTACGACGGTAGATGTGCCTACGCCTGTCATTGGAATCGACACAGAATTTAGATTCATCAGTT---TAAAGAACCGATCTCCACTGATTAACCAATCATCTGCGATGTTGCAATACCTAGTGCAGATGTAAACGTCGATTGTTGTGCATAAGACGTG-CA-CGCAATACGGACGTCGGCAACGTATC------------------CGTTGCCTTACCATTCTGGCGCTAATGTGCCACTGAGTACATTCTTGTGTGTTGAGAGCA--GTTACGTGGGAAT-GAAATCGGTCACGCAGATGTGTCGAGGCGATT---------TGAC------------CTCGGCAGGTC-------------------GGCAACAGACCCAGCTGCAACAAATTTCTGGCGTAAACACCGAATTGTGCCAACACTAACCCCGAAATCGTTCGCAACACGTAATGGTTG
gi|10 : AGTTTAAACATATTTTATTACTTATGT-----TACAGA----TA----ATTA-ATA----TCATAGTCA--TG---TTAACAC-ATAT-TTA-----TATA
gi|11 : ttAGTTAAAACATATTTTATTACTAATGT-----TACAGA----TA----AATA-ACA----TCA----CA--TG---ATAATAT-GTAT-TTA-----TATA
gi|12 : ttAGTTTAAACATACTTTATTACTTATGT-----TACAGA----TA----CTTA-ACA----TCA----CA--TT---ATGCTAC-ATAA-TTA-----TATA
gi|13 : ttAGTTAAAACATATTTTATTACTAATGT-----TACAGA----TA----AATA-ACA----TCA----CA--TG---ATAATAT-GTAT-TTA-----TATA
gi|14 : AGTTTAAACATATTTTATTTGCTATGT-----TGCAGT----GA----ATTA-ACA----TCA----CA--TG---ATAGTGC-ATA
gi|15 : tCA----CA--TG---ATAAAAC-ATGT-GTA-----TATATAACATTTGCAAATG----GAa
gi|16 : AGTTTAAACATATTTTATTACTTAAGT-----TACAGA----TA----ATTA-ACA----CCA----AA--Tttgaaatcctaaagt
gi|17 : tttGTTTAAACATGATTTATTACTCATGT-----TACATA----GA----ATGA-ACA----TCA----CG--T
gi|2 : TCGTTGGAAAGAA-CAGCTCAATGCCAATTTTAAAGCGTGTATAGTTACGATGAATTTGATTTATTTATTTTATCACAATTGGCGTTTGAATTTACATACTGTATTTTTGACAATAACTCATTTTGTAAAAATGGCGCCTACTGTTGTAATGTTTAAATTTCAATATCGCGTGTGTCACCCGCGGGCATTAACCAGTGCAACACAACGTCGGAGCAGCGACAAGACGAGCCTTCGTAGAAATTGAGTCGGTAGTTGGTCCCATTCCTCTGCTATAGCAGCCCTAAGTTCATGATTTGTCCTGAGATTTCTGGCACGAACTCTCCGTTTCAA-ATA
gi|2 : GAAGACGGTGCCATGGTGGAGGCGAATGATTGGAACAAA--AACTGGCTGGAGCACCTGGTCGATGTAACGCTGCGCCGTTAAACCACGTCCATATCATTTTCCAAACTCAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagacggtgccatggtggaggcgaatgattggaacaaaaactggctggagcacctggtcgatgtaacgctgcgccgttaaaccacgtccatatcattttccaaactcaa
gi|3 : tcgttggaaagaacagctcaatgccaattttaaagcgtgtatagttacgatgaatttgatttatttattttatcacaattggcgtttgaatttacatactgtatttttgacaataactcattttgtaaaaatggcgcctactgttgtaatgtttaaatttcaatatcgcgtgtgtcacccgcgggcattaaccagtgcaacacaacgtcggagcagcgacaagacgagccttcgtagaaattgagtcggtagttggtcccattcctctgctatagcagccctaagttcatgatttgtcctgagatttctggcacgaactctccgtttcaaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACGTCGATGGCTGTGCTTAAAATGTG-CTTCGCAATACGGGCGTCGGCAAAGTATCCCGGCAGCAACTCTGACGCGTCGCCTGGCGGTTCTGGCGCTAATATGCAACCGAGTACGTCCT--TGTGTTGAGAGCAGTGTTACGTCGGACTAAAAATCGGTCTCGCAGATGTGTCAAGGCGATTTGCCGATCCTGACGTAATGTTATTTCTCG--AGGACGTCCAGACCTCGACAGGTCGGCAACAGACCCAGTTGCAACAAATGTCTGGCGTAAATACCG---------AACACTAACCCCGAAATCGTTCACAACACGTAATAGTTG
gi|4 : CTCAACCACACAAGCGTCCGCAAACTTTTCACCAGTACGACGGTAGATGTGCCTACGCCGGTCATTGGAACCGA------ATTTAGATTCATCAGTGAAAAAAAGAACCGATCTCCACTGATTAACCAACTATCTGAGATGTTGCAATGCCCAGTGTAGACGTAAACGTCGATGGCTGTGCTAAAGATGTGTCC-CGCAATACGGGCGTCGGC
gi|5 : GTTCAAACATATTCTATAACATATGTAACAATATAGAGACATACAAAATTA-ACAACAGTGA----CG--TG---ATAACAA-AT-----------TATATAACGTATGCAAATGTAATGAA----CTACAAGTTATA
gi|6 : ctgttatcttgtaaataaatgcacattgttttgtaacgtaaatttatatagtTAAACATCTTTTATGACGTATGC-----ATCAGG----GT----ATGA-ATA----TCA----CA--T----AT--TAC-ATAT-TTACTCTATATATAACATAC-----TG-----AA----CCATTAGTTATAGCAATATCAGTTACAGTcc
gi|7 : tttagcAGTTTAAACTTATTGTTTGACTTATGA-----AAGAGG----GA----ATAA-ACA----TCA----CA--TG---ATAAAAC-ATGTGTTA------ATATAACATTCGCAAATG----GActaaaatgttatcaaaa
gi|8 : gtttAGTTTAAACATATATTATTACTAATGT-----TACACA----TA----TTTA-ACA----TCA----CA--TG---ATAATAC-ATAT-TTA-----TATATAACATACGCAAATGGATTGAA----CCTTAAGTTATAACAAttgaaatcctaaagtacactt
gi|9 : tGTTTACACATATTCTGTTACGTATGT-----TACATA----TA----TCCACACA----T-A----CAACTGAACATAACACGATAC-CAAC----TATATAACATACGCAAATG----GAATGATCTACAAGTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): CTGTTTACTATGTTAAAGTTGAACGTTTTAATC
Alignments
lowQualScore : 11111 2222 1111 1 2222 1 1 11 11 222222 22222 1111 666666666666666666 11 11 1 333333333 444444444444 11 6666666666666666666 333333333
lowQualScore : 77777 6666 6666 3 6666 6666 33 555 3 3 22222 0 4444 7777 1 5 4444 22 1 1 1 5 1 1 1 1 1 1 1 333 1 1 5 1 1 88 77 1 1 1 999999 33333 1 0 7777 1 000000000000000000 1 2 1 88 88 1 1 5 1 666666666 777777777777 77 1 3333333333333333333 1 777777777
lowQualScore : ..... .... .... . .... .... .. ... . . ..... . .... .... . . .... .. . . . . . . . . . . . ... . . . . . .. .. . . . ...... ..... . . .... . .................. . . . .. .. . . . . ......... ............ .. . ................... . .........
lowQualScore : 77777 5555 5555 1 5555 1111 99 888 3 6 77777 6 3333 0000 4 5 5555 00 0 0 0 5 0 0 0 0 0 0 0 000 0 0 5 0 0 55 55 0 0 0 000000 55555 0 7 7777 0 555555555555555555 0 5 0 00 00 0 0 5 0 555555555 555555555555 55 0 5555555555555555555 0 555555555
consensus : AGTTTAAACATATTTTATTACTTATGT-----TACAGA----TA----ATTA-ACA----TCA----CA--TG---ATAATAC-ATAT-TTA-----TATATAACATACGCAAATG----GAA----CTATAAGTTATAACAACACCAGTTACAGTTCTCTCTATATCATCAATATCAAAAGTCTTGTCCATCTATATTAAATATAAATATCTCCACTCAGAGGCAACCGATTTTTATACATTTGGTATCGTTGGAAAGAAACAGCTCAATGCCAATTTTAAAGCGTGTNNAGTTNCGATGAATTTNATTTATTNATTTTATCACANTTGGCGTCTGAATTTACNTACTGTATTTTTGACAATAACTCATTTTGTAAAAATGGCGCCTACTGTTGTNATGTTTAAATTTCAATATCGNGTGTGTCNCCCGCGGGCANCGACCAGTGCAACACGACGTCGGNGNNNCGACAAGACGAGCCTTCGTAGAAATTGAGTCGGTAGTTGGTCCCATTCCTCTGCTATAGCANCCCTAAGTTCATGATTTGTCCTGAGATTTCTGGCACGAACTCTCCNTTTCAATATAGTGCAGGCCATGGCAGTACATCAATGTTATTTGCCGTCAGGAAGTTTGTTGTGAGTCTCGCACTATGGGGCCATGCGTTGTCTTATTGGAAGACGGTGCCATGGTGGAGGCNAATGANTGGAACAGACCAACTGGCTGGAGCACCTGGTCGATGTAACGCTGCGCCGTTAAACCACGTCCATGTCNTTTTCCAAACNCAAGGAAGACCAGTCTGGTTTTGTGGTCAGCCATATATCCAGCCAACACCATTGCCCTAGGCCCACCCCACCTATCTGACTCGACCACACAGGCGTCCGCAAACCTTTCGCCAGTACGACGGTAGATGTGCCTACGCCNGTCATTGGAACCGACACAGAATTTAGATTCATCAGTNAAANAAAGAACCGATCTCCACTGATTAACCAACCATCTGNGATGTTGCAATGCCCAGTGCAGACGTAAACGTCGATGGCTGTGCTTAAGACGTG-CN-CGCAATACGGGCGTCGGCAANGTATCCCGGCAGCAACTCTGACGCGTCGCCTNGCCGTTCTGGCGCTAATGTGCNACCGAGTACGTCCTTGTGTGTTGAGAGCAGTGTTACGTNGGANTAGAAATCGGTCNCGCAGATGTGTCGAGGCGATTTGCCGATCCTGACGTAATGTTATTTCTCGGCAGGNCGTCCAGACCTCGACAGGTCGGCAACAGACCCAGCTGCAACAAATNTCTGGCGTAAACACCGAATTGTGCCAACACTAACCCCGAAATCGTTCGCAACACGTAATGGTTG
Reference ( family-1018 ) : AGTTTAAACATATTTTATTACTTATGT-----TACAGA----TA----ATTA-ACA----TCA----CA--TG---ATAATAC-ATAT-TTA-----TATATAACATACGCAAATG----GAA----CTATAAGTTATAACAACACCAGTTACAGTTCTCTCTATATCATCAATATCAAAAGTCTTGTCCATCTATATTAAATATAAATATCTCCACTCAGAGGCAACCGATTTTTATACATTTGGTATCGTTGGAAAGAAACAGCTCAATGCCAATTTTAAAGCGTGTNNAGTTNCGATGAATTTNATTTATTNATTTTATCACANTTGGCGTCTGAATTTACNTACTGTATTTTTGACAATAACTCATTTTGTAAAAATGGCGCCTACTGTTGTNATGTTTAAATTTCAATATCGNGTGTGTCNCCCGCGGGCANCGACCAGTGCAACACGACGTCGGNGNNNCGACAAGACGAGCCTTCGTAGAAATTGAGTCGGTAGTTGGTCCCATTCCTCTGCTATAGCANCCCTAAGTTCATGATTTGTCCTGAGATTTCTGGCACGAACTCTCCNTTTCAATATAGTGCAGGCCATGGCAGTACATCAATGTTATTTGCCGTCAGGAAGTTTGTTGTGAGTCTCGCACTATGGGGCCATGCGTTGTCTTATTGGAAGACGGTGCCATGGTGGAGGCNAATGANTGGAACAGACCAACTGGCTGGAGCACCTGGTCGATGTAACGCTGCGCCGTTAAACCACGTCCATGTCNTTTTCCAAACNCAAGGAAGACCAGTCTGGTTTTGTGGTCAGCCATATATCCAGCCAACACCATTGCCCTAGGCCCACCCCACCTATCTGACTCGACCACACAGGCGTCCGCAAACCTTTCGCCAGTACGACGGTAGATGTGCCTACGCCNGTCATTGGAACCGACACAGAATTTAGATTCATCAGTNAAANAAAGAACCGATCTCCACTGATTAACCAACCATCTGNGATGTTGCAATGCCCAGTGCAGACGTAAACGTCGATGGCTGTGCTTAAGACGTG-CN-CGCAATACGGGCGTCGGCAANGTATCCCGGCAGCAACTCTGACGCGTCGCCTNGCCGTTCTGGCGCTAATGTGCNACCGAGTACGTCCTTGTGTGTTGAGAGCAGTGTTACGTNGGANTAGAAATCGGTCNCGCAGATGTGTCGAGGCGATTTGCCGATCCTGACGTAATGTTATTTCTCGGCAGGNCGTCCAGACCTCGACAGGTCGGCAACAGACCCAGCTGCAACAAATNTCTGGCGTAAACACCGAATTGTGCCAACACTAACCCCGAAATCGTTCGCAACACGTAATGGTTG
gi|1 : AGTTTAAACATATTTTATTACTTATGT-----AACAGA----CA----GTTA-ACC----TCA----CA--TG---ATAATAC-ATAT-TTA-----TATATAACATGCACAAATT----GAA----CTTTAAGTTATAACAACACTAGTTACAGTTCTCTCTATATCATCAATATCAAAAGTCTTGTCCATCTATATTAAATATAAATATCTCCACTCAGAGGCAACCGATTTTTATACATTTGGTATCGTTGGAAAAAAACAGCTCAATGCCAAT----AAGCGTGTTAAGTTCTGATGAATTTTATTTATTGATTT-ATCACATTTGGTGTCTGAATTTACCTACTGTATTTTTGACAATAACTTATTTTGTAAAAATGGCACCTACTGTTATCATGTTTAAATTTCAATATCGGGTGTGTCCCCCATGGGCAGCGACCAATGCAACACGACGTCGGCGATTCGACAAGACAAGCTTTTGTAGAAATTGAGTCGGTAGTTGGTCCCATTCCTTTGCTATAGCATTCTTAAGTTCATGATTTGTCCTGAGATTTCTGGCACGAACTCTCCTTTTCAATATAGTGCAGGCCATGGCAGTACATCAATGTTATTTGCCGTCAGGAAGTTTGTTGTGAGTCTCGCACTATGGGGCCATGCGTTGTCTTATTGGAAGATGGTGCCATAGTGGAGGCCAATGAATGG--CAGACCAACTGGCTGGAGCACCTGGTTGATGTAACGTTGCGCCGTTAAACCACATCCATGTCCTTTTCCAAACACAAGGAAGACCAGTCTGGTTTTGTGGTCAGCCATATATCCAGCCAACACCATTGCCCTAGGCCCACCCCACCTATCTGACTCGACCACATAGGCATCCGCAAACCTTTCGCCAGTACGACGGTAGATGTGCCTACGCCTGTCATTGGAATCGACACAGAATTTAGATTCATCAGTT---TAAAGAACCGATCTCCACTGATTAACCAATCATCTGCGATGTTGCAATACCTAGTGCAGATGTAAACGTCGATTGTTGTGCATAAGACGTG-CA-CGCAATACGGACGTCGGCAACGTATC------------------CGTTGCCTTACCATTCTGGCGCTAATGTGCCACTGAGTACATTCTTGTGTGTTGAGAGCA--GTTACGTGGGAAT-GAAATCGGTCACGCAGATGTGTCGAGGCGATT---------TGAC------------CTCGGCAGGTC-------------------GGCAACAGACCCAGCTGCAACAAATTTCTGGCGTAAACACCGAATTGTGCCAACACTAACCCCGAAATCGTTCGCAACACGTAATGGTTG
gi|10 : AGTTTAAACATATTTTATTACTTATGT-----TACAGA----TA----ATTA-ATA----TCATAGTCA--TG---TTAACAC-ATAT-TTA-----TATA
gi|11 : ttAGTTAAAACATATTTTATTACTAATGT-----TACAGA----TA----AATA-ACA----TCA----CA--TG---ATAATAT-GTAT-TTA-----TATA
gi|12 : ttAGTTTAAACATACTTTATTACTTATGT-----TACAGA----TA----CTTA-ACA----TCA----CA--TT---ATGCTAC-ATAA-TTA-----TATA
gi|13 : ttAGTTAAAACATATTTTATTACTAATGT-----TACAGA----TA----AATA-ACA----TCA----CA--TG---ATAATAT-GTAT-TTA-----TATA
gi|14 : AGTTTAAACATATTTTATTTGCTATGT-----TGCAGT----GA----ATTA-ACA----TCA----CA--TG---ATAGTGC-ATA
gi|15 : tCA----CA--TG---ATAAAAC-ATGT-GTA-----TATATAACATTTGCAAATG----GAa
gi|16 : AGTTTAAACATATTTTATTACTTAAGT-----TACAGA----TA----ATTA-ACA----CCA----AA--Tttgaaatcctaaagt
gi|17 : tttGTTTAAACATGATTTATTACTCATGT-----TACATA----GA----ATGA-ACA----TCA----CG--T
gi|2 : TCGTTGGAAAGAA-CAGCTCAATGCCAATTTTAAAGCGTGTATAGTTACGATGAATTTGATTTATTTATTTTATCACAATTGGCGTTTGAATTTACATACTGTATTTTTGACAATAACTCATTTTGTAAAAATGGCGCCTACTGTTGTAATGTTTAAATTTCAATATCGCGTGTGTCACCCGCGGGCATTAACCAGTGCAACACAACGTCGGAGCAGCGACAAGACGAGCCTTCGTAGAAATTGAGTCGGTAGTTGGTCCCATTCCTCTGCTATAGCAGCCCTAAGTTCATGATTTGTCCTGAGATTTCTGGCACGAACTCTCCGTTTCAA-ATA
gi|2 : GAAGACGGTGCCATGGTGGAGGCGAATGATTGGAACAAA--AACTGGCTGGAGCACCTGGTCGATGTAACGCTGCGCCGTTAAACCACGTCCATATCATTTTCCAAACTCAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagacggtgccatggtggaggcgaatgattggaacaaaaactggctggagcacctggtcgatgtaacgctgcgccgttaaaccacgtccatatcattttccaaactcaa
gi|3 : tcgttggaaagaacagctcaatgccaattttaaagcgtgtatagttacgatgaatttgatttatttattttatcacaattggcgtttgaatttacatactgtatttttgacaataactcattttgtaaaaatggcgcctactgttgtaatgtttaaatttcaatatcgcgtgtgtcacccgcgggcattaaccagtgcaacacaacgtcggagcagcgacaagacgagccttcgtagaaattgagtcggtagttggtcccattcctctgctatagcagccctaagttcatgatttgtcctgagatttctggcacgaactctccgtttcaaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACGTCGATGGCTGTGCTTAAAATGTG-CTTCGCAATACGGGCGTCGGCAAAGTATCCCGGCAGCAACTCTGACGCGTCGCCTGGCGGTTCTGGCGCTAATATGCAACCGAGTACGTCCT--TGTGTTGAGAGCAGTGTTACGTCGGACTAAAAATCGGTCTCGCAGATGTGTCAAGGCGATTTGCCGATCCTGACGTAATGTTATTTCTCG--AGGACGTCCAGACCTCGACAGGTCGGCAACAGACCCAGTTGCAACAAATGTCTGGCGTAAATACCG---------AACACTAACCCCGAAATCGTTCACAACACGTAATAGTTG
gi|4 : CTCAACCACACAAGCGTCCGCAAACTTTTCACCAGTACGACGGTAGATGTGCCTACGCCGGTCATTGGAACCGA------ATTTAGATTCATCAGTGAAAAAAAGAACCGATCTCCACTGATTAACCAACTATCTGAGATGTTGCAATGCCCAGTGTAGACGTAAACGTCGATGGCTGTGCTAAAGATGTGTCC-CGCAATACGGGCGTCGGC
gi|5 : GTTCAAACATATTCTATAACATATGTAACAATATAGAGACATACAAAATTA-ACAACAGTGA----CG--TG---ATAACAA-AT-----------TATATAACGTATGCAAATGTAATGAA----CTACAAGTTATA
gi|6 : ctgttatcttgtaaataaatgcacattgttttgtaacgtaaatttatatagtTAAACATCTTTTATGACGTATGC-----ATCAGG----GT----ATGA-ATA----TCA----CA--T----AT--TAC-ATAT-TTACTCTATATATAACATAC-----TG-----AA----CCATTAGTTATAGCAATATCAGTTACAGTcc
gi|7 : tttagcAGTTTAAACTTATTGTTTGACTTATGA-----AAGAGG----GA----ATAA-ACA----TCA----CA--TG---ATAAAAC-ATGTGTTA------ATATAACATTCGCAAATG----GActaaaatgttatcaaaa
gi|8 : gtttAGTTTAAACATATATTATTACTAATGT-----TACACA----TA----TTTA-ACA----TCA----CA--TG---ATAATAC-ATAT-TTA-----TATATAACATACGCAAATGGATTGAA----CCTTAAGTTATAACAAttgaaatcctaaagtacactt
gi|9 : tGTTTACACATATTCTGTTACGTATGT-----TACATA----TA----TCCACACA----T-A----CAACTGAACATAACACGATAC-CAAC----TATATAACATACGCAAATG----GAATGATCTACAAGTT
blockSeqs : AACAA GACA CAAA C ACAG TAGT AC AAC G G CTCTA TAAT TGAT A . TTTA AT A G T T A A A C A T A CAG G G . G T AA . A T G . GAAAA A CTT A CCGGCAGCAACTCTGACG G G A . GT C C A T TGCCGATCC GTAATGTTATTT . A GTCCAGACCTCGACAGGTC G .
blockSeqs : . . . . . . . . . . C GATT . A TCC
blockSeqs : . . . . . . . . . . . . . T
blockSeqs : . . . . . . . . . . . . . A
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . .
blockSeqCons :
originalCons : AGTTTAAACATATTTTATTACTTATGT-----TACAGA----TA----ATTA-ACA----TCA----CA--TG---ATAATAC-ATAT-TTA-----TATATAACATACGCAAATG----GAA----CTATAAGTTATAACAACACCAGTTACAGTTCTCTCTATATCATCAATATCAAAAGTCTTGTCCATCTATATTAAATATAAATATCTCCACTCAGAGGCAACCGATTTTTATACATTTGGTATCGTTGGAAAGAAACAGCTCAATGCCAATTTTAAAGCGTGTNNAGTTNCGATGAATTTNATTTATTNATTTTATCACANTTGGCGTCTGAATTTACNTACTGTATTTTTGACAATAACTCATTTTGTAAAAATGGCGCCTACTGTTGTNATGTTTAAATTTCAATATCGNGTGTGTCNCCCGCGGGCANCGACCAGTGCAACACGACGTCGGNGNNNCGACAAGACGAGCCTTCGTAGAAATTGAGTCGGTAGTTGGTCCCATTCCTCTGCTATAGCANCCCTAAGTTCATGATTTGTCCTGAGATTTCTGGCACGAACTCTCCNTTTCAATATAGTGCAGGCCATGGCAGTACATCAATGTTATTTGCCGTCAGGAAGTTTGTTGTGAGTCTCGCACTATGGGGCCATGCGTTGTCTTATTGGAAGACGGTGCCATGGTGGAGGCNAATGANTGGAACAGACCAACTGGCTGGAGCACCTGGTCGATGTAACGCTGCGCCGTTAAACCACGTCCATGTCNTTTTCCAAACNCAAGGAAGACCAGTCTGGTTTTGTGGTCAGCCATATATCCAGCCAACACCATTGCCCTAGGCCCACCCCACCTATCTGACTCGACCACACAGGCGTCCGCAAACCTTTCGCCAGTACGACGGTAGATGTGCCTACGCCNGTCATTGGAACCGACACAGAATTTAGATTCATCAGTNAAANAAAGAACCGATCTCCACTGATTAACCAACCATCTGNGATGTTGCAATGCCCAGTGCAGACGTAAACGTCGATGGCTGTGCTTAAGACGTG-CN-CGCAATACGGGCGTCGGCAANGTATCCCGGCAGCAACTCTGACGCGTCGCCTNGCCGTTCTGGCGCTAATGTGCNACCGAGTACGTCCTTGTGTGTTGAGAGCAGTGTTACGTNGGANTAGAAATCGGTCNCGCAGATGTGTCGAGGCGATTTGCCGATCCTGACGTAATGTTATTTCTCGGCAGGNCGTCCAGACCTCGACAGGTCGGCAACAGACCCAGCTGCAACAAATNTCTGGCGTAAACACCGAATTGTGCCAACACTAACCCCGAAATCGTTCGCAACACGTAATGGTTG
finalCons : AGTTTAAACATATTTTATTACTTATGT-----TACAGA----TA----ATTA-ACA----TCA----CA--TG---ATAATAC-ATAT-TTA-----TATATAACATACGCAAATG----GAA----CTATAAGTTATAACAACACCAGTTACAGTTCTCTCTATATCATCAATATCAAAAGTCTTGTCCATCTATATTAAATATAAATATCTCCACTCAGAGGCAACCGATTTTTATACATTTGGTATCGTTGGAAAGAAACAGCTCAATGCCAATTTTAAAGCGTGTNNAGTTNCGATGAATTTNATTTATTNATTTTATCACANTTGGCGTCTGAATTTACNTACTGTATTTTTGACAATAACTCATTTTGTAAAAATGGCGCCTACTGTTGTNATGTTTAAATTTCAATATCGNGTGTGTCNCCCGCGGGCANCGACCAGTGCAACACGACGTCGGNGNNNCGACAAGACGAGCCTTCGTAGAAATTGAGTCGGTAGTTGGTCCCATTCCTCTGCTATAGCANCCCTAAGTTCATGATTTGTCCTGAGATTTCTGGCACGAACTCTCCNTTTCAATATAGTGCAGGCCATGGCAGTACATCAATGTTATTTGCCGTCAGGAAGTTTGTTGTGAGTCTCGCACTATGGGGCCATGCGTTGTCTTATTGGAAGACGGTGCCATGGTGGAGGCNAATGANTGGAACAGACCAACTGGCTGGAGCACCTGGTCGATGTAACGCTGCGCCGTTAAACCACGTCCATGTCNTTTTCCAAACNCAAGGAAGACCAGTCTGGTTTTGTGGTCAGCCATATATCCAGCCAACACCATTGCCCTAGGCCCACCCCACCTATCTGACTCGACCACACAGGCGTCCGCAAACCTTTCGCCAGTACGACGGTAGATGTGCCTACGCCNGTCATTGGAACCGACACAGAATTTAGATTCATCAGTNAAANAAAGAACCGATCTCCACTGATTAACCAACCATCTGNGATGTTGCAATGCCCAGTGCAGACGTAAACGTCGATGGCTGTGCTTAAGACGTG-CN-CGCAATACGGGCGTCGGCAANGTATCCCGGCAGCAACTCTGACGCGTCGCCTNGCCGTTCTGGCGCTAATGTGCNACCGAGTACGTCCTTGTGTGTTGAGAGCAGTGTTACGTNGGANTAGAAATCGGTCNCGCAGATGTGTCGAGGCGATTTGCCGATCCTGACGTAATGTTATTTCTCGGCAGGNCGTCCAGACCTCGACAGGTCGGCAACAGACCCAGCTGCAACAAATNTCTGGCGTAAACACCGAATTGTGCCAACACTAACCCCGAAATCGTTCGCAACACGTAATGGTTG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): CTGTTTACTATGTTAAAGTTGAACGTTTTAATC
Alignments
lowQualScore : 11111 2222 1111 1 2222 1 1 11 11 222222 22222 1111 666666666666666666 11 11 1 333333333 444444444444 11 6666666666666666666 333333333
lowQualScore : 77777 6666 6666 3 6666 6666 33 555 3 3 22222 0 4444 7777 1 5 4444 22 1 1 1 5 1 1 1 1 1 1 1 333 1 1 5 1 1 88 77 1 1 1 999999 33333 1 0 7777 1 000000000000000000 1 2 1 88 88 1 1 5 1 666666666 777777777777 77 1 3333333333333333333 1 777777777
lowQualScore : ..... .... .... . .... .... .. ... . . ..... . .... .... . . .... .. . . . . . . . . . . . ... . . . . . .. .. . . . ...... ..... . . .... . .................. . . . .. .. . . . . ......... ............ .. . ................... . .........
lowQualScore : 77777 5555 5555 1 5555 1111 99 888 3 6 77777 6 3333 0000 4 5 5555 00 0 0 0 5 0 0 0 0 0 0 0 000 0 0 5 0 0 55 55 0 0 0 000000 55555 0 7 7777 0 555555555555555555 0 5 0 00 00 0 0 5 0 555555555 555555555555 55 0 5555555555555555555 0 555555555
consensus : AGTTTAAACATATTTTATTACTTATGT-----TACAGA----TA----ATTA-ACA----TCA----CA--TG---ATAATAC-ATAT-TTA-----TATATAACATACGCAAATG----GAA----CTATAAGTTATAACAACACCAGTTACAGTTCTCTCTATATCATCAATATCAAAAGTCTTGTCCATCTATATTAAATATAAATATCTCCACTCAGAGGCAACCGATTTTTATACATTTGGTATCGTTGGAAAGAAACAGCTCAATGCCAATTTTAAAGCGTGTNNAGTTNCGATGAATTTNATTTATTNATTTTATCACANTTGGCGTCTGAATTTACNTACTGTATTTTTGACAATAACTCATTTTGTAAAAATGGCGCCTACTGTTGTNATGTTTAAATTTCAATATCGNGTGTGTCNCCCGCGGGCANCGACCAGTGCAACACGACGTCGGNGNNNCGACAAGACGAGCCTTCGTAGAAATTGAGTCGGTAGTTGGTCCCATTCCTCTGCTATAGCANCCCTAAGTTCATGATTTGTCCTGAGATTTCTGGCACGAACTCTCCNTTTCAATATAGTGCAGGCCATGGCAGTACATCAATGTTATTTGCCGTCAGGAAGTTTGTTGTGAGTCTCGCACTATGGGGCCATGCGTTGTCTTATTGGAAGACGGTGCCATGGTGGAGGCNAATGANTGGAACAGACCAACTGGCTGGAGCACCTGGTCGATGTAACGCTGCGCCGTTAAACCACGTCCATGTCNTTTTCCAAACNCAAGGAAGACCAGTCTGGTTTTGTGGTCAGCCATATATCCAGCCAACACCATTGCCCTAGGCCCACCCCACCTATCTGACTCGACCACACAGGCGTCCGCAAACCTTTCGCCAGTACGACGGTAGATGTGCCTACGCCNGTCATTGGAACCGACACAGAATTTAGATTCATCAGTNAAANAAAGAACCGATCTCCACTGATTAACCAACCATCTGNGATGTTGCAATGCCCAGTGCAGACGTAAACGTCGATGGCTGTGCTTAAGACGTG-CN-CGCAATACGGGCGTCGGCAANGTATCCCGGCAGCAACTCTGACGCGTCGCCTNGCCGTTCTGGCGCTAATGTGCNACCGAGTACGTCCTTGTGTGTTGAGAGCAGTGTTACGTNGGANTAGAAATCGGTCNCGCAGATGTGTCGAGGCGATTTGCCGATCCTGACGTAATGTTATTTCTCGGCAGGNCGTCCAGACCTCGACAGGTCGGCAACAGACCCAGCTGCAACAAATNTCTGGCGTAAACACCGAATTGTGCCAACACTAACCCCGAAATCGTTCGCAACACGTAATGGTTG
Reference ( family-1018 ) : AGTTTAAACATATTTTATTACTTATGT-----TACAGA----TA----ATTA-ACA----TCA----CA--TG---ATAATAC-ATAT-TTA-----TATATAACATACGCAAATG----GAA----CTATAAGTTATAACAACACCAGTTACAGTTCTCTCTATATCATCAATATCAAAAGTCTTGTCCATCTATATTAAATATAAATATCTCCACTCAGAGGCAACCGATTTTTATACATTTGGTATCGTTGGAAAGAAACAGCTCAATGCCAATTTTAAAGCGTGTNNAGTTNCGATGAATTTNATTTATTNATTTTATCACANTTGGCGTCTGAATTTACNTACTGTATTTTTGACAATAACTCATTTTGTAAAAATGGCGCCTACTGTTGTNATGTTTAAATTTCAATATCGNGTGTGTCNCCCGCGGGCANCGACCAGTGCAACACGACGTCGGNGNNNCGACAAGACGAGCCTTCGTAGAAATTGAGTCGGTAGTTGGTCCCATTCCTCTGCTATAGCANCCCTAAGTTCATGATTTGTCCTGAGATTTCTGGCACGAACTCTCCNTTTCAATATAGTGCAGGCCATGGCAGTACATCAATGTTATTTGCCGTCAGGAAGTTTGTTGTGAGTCTCGCACTATGGGGCCATGCGTTGTCTTATTGGAAGACGGTGCCATGGTGGAGGCNAATGANTGGAACAGACCAACTGGCTGGAGCACCTGGTCGATGTAACGCTGCGCCGTTAAACCACGTCCATGTCNTTTTCCAAACNCAAGGAAGACCAGTCTGGTTTTGTGGTCAGCCATATATCCAGCCAACACCATTGCCCTAGGCCCACCCCACCTATCTGACTCGACCACACAGGCGTCCGCAAACCTTTCGCCAGTACGACGGTAGATGTGCCTACGCCNGTCATTGGAACCGACACAGAATTTAGATTCATCAGTNAAANAAAGAACCGATCTCCACTGATTAACCAACCATCTGNGATGTTGCAATGCCCAGTGCAGACGTAAACGTCGATGGCTGTGCTTAAGACGTG-CN-CGCAATACGGGCGTCGGCAANGTATCCCGGCAGCAACTCTGACGCGTCGCCTNGCCGTTCTGGCGCTAATGTGCNACCGAGTACGTCCTTGTGTGTTGAGAGCAGTGTTACGTNGGANTAGAAATCGGTCNCGCAGATGTGTCGAGGCGATTTGCCGATCCTGACGTAATGTTATTTCTCGGCAGGNCGTCCAGACCTCGACAGGTCGGCAACAGACCCAGCTGCAACAAATNTCTGGCGTAAACACCGAATTGTGCCAACACTAACCCCGAAATCGTTCGCAACACGTAATGGTTG
gi|1 : AGTTTAAACATATTTTATTACTTATGT-----AACAGA----CA----GTTA-ACC----TCA----CA--TG---ATAATAC-ATAT-TTA-----TATATAACATGCACAAATT----GAA----CTTTAAGTTATAACAACACTAGTTACAGTTCTCTCTATATCATCAATATCAAAAGTCTTGTCCATCTATATTAAATATAAATATCTCCACTCAGAGGCAACCGATTTTTATACATTTGGTATCGTTGGAAAAAAACAGCTCAATGCCAAT----AAGCGTGTTAAGTTCTGATGAATTTTATTTATTGATTT-ATCACATTTGGTGTCTGAATTTACCTACTGTATTTTTGACAATAACTTATTTTGTAAAAATGGCACCTACTGTTATCATGTTTAAATTTCAATATCGGGTGTGTCCCCCATGGGCAGCGACCAATGCAACACGACGTCGGCGATTCGACAAGACAAGCTTTTGTAGAAATTGAGTCGGTAGTTGGTCCCATTCCTTTGCTATAGCATTCTTAAGTTCATGATTTGTCCTGAGATTTCTGGCACGAACTCTCCTTTTCAATATAGTGCAGGCCATGGCAGTACATCAATGTTATTTGCCGTCAGGAAGTTTGTTGTGAGTCTCGCACTATGGGGCCATGCGTTGTCTTATTGGAAGATGGTGCCATAGTGGAGGCCAATGAATGG--CAGACCAACTGGCTGGAGCACCTGGTTGATGTAACGTTGCGCCGTTAAACCACATCCATGTCCTTTTCCAAACACAAGGAAGACCAGTCTGGTTTTGTGGTCAGCCATATATCCAGCCAACACCATTGCCCTAGGCCCACCCCACCTATCTGACTCGACCACATAGGCATCCGCAAACCTTTCGCCAGTACGACGGTAGATGTGCCTACGCCTGTCATTGGAATCGACACAGAATTTAGATTCATCAGTT---TAAAGAACCGATCTCCACTGATTAACCAATCATCTGCGATGTTGCAATACCTAGTGCAGATGTAAACGTCGATTGTTGTGCATAAGACGTG-CA-CGCAATACGGACGTCGGCAACGTATC------------------CGTTGCCTTACCATTCTGGCGCTAATGTGCCACTGAGTACATTCTTGTGTGTTGAGAGCA--GTTACGTGGGAAT-GAAATCGGTCACGCAGATGTGTCGAGGCGATT---------TGAC------------CTCGGCAGGTC-------------------GGCAACAGACCCAGCTGCAACAAATTTCTGGCGTAAACACCGAATTGTGCCAACACTAACCCCGAAATCGTTCGCAACACGTAATGGTTG
gi|10 : AGTTTAAACATATTTTATTACTTATGT-----TACAGA----TA----ATTA-ATA----TCATAGTCA--TG---TTAACAC-ATAT-TTA-----TATA
gi|11 : ttAGTTAAAACATATTTTATTACTAATGT-----TACAGA----TA----AATA-ACA----TCA----CA--TG---ATAATAT-GTAT-TTA-----TATA
gi|12 : ttAGTTTAAACATACTTTATTACTTATGT-----TACAGA----TA----CTTA-ACA----TCA----CA--TT---ATGCTAC-ATAA-TTA-----TATA
gi|13 : ttAGTTAAAACATATTTTATTACTAATGT-----TACAGA----TA----AATA-ACA----TCA----CA--TG---ATAATAT-GTAT-TTA-----TATA
gi|14 : AGTTTAAACATATTTTATTTGCTATGT-----TGCAGT----GA----ATTA-ACA----TCA----CA--TG---ATAGTGC-ATA
gi|15 : tCA----CA--TG---ATAAAAC-ATGT-GTA-----TATATAACATTTGCAAATG----GAa
gi|16 : AGTTTAAACATATTTTATTACTTAAGT-----TACAGA----TA----ATTA-ACA----CCA----AA--Tttgaaatcctaaagt
gi|17 : tttGTTTAAACATGATTTATTACTCATGT-----TACATA----GA----ATGA-ACA----TCA----CG--T
gi|2 : TCGTTGGAAAGAA-CAGCTCAATGCCAATTTTAAAGCGTGTATAGTTACGATGAATTTGATTTATTTATTTTATCACAATTGGCGTTTGAATTTACATACTGTATTTTTGACAATAACTCATTTTGTAAAAATGGCGCCTACTGTTGTAATGTTTAAATTTCAATATCGCGTGTGTCACCCGCGGGCATTAACCAGTGCAACACAACGTCGGAGCAGCGACAAGACGAGCCTTCGTAGAAATTGAGTCGGTAGTTGGTCCCATTCCTCTGCTATAGCAGCCCTAAGTTCATGATTTGTCCTGAGATTTCTGGCACGAACTCTCCGTTTCAA-ATA
gi|2 : GAAGACGGTGCCATGGTGGAGGCGAATGATTGGAACAAA--AACTGGCTGGAGCACCTGGTCGATGTAACGCTGCGCCGTTAAACCACGTCCATATCATTTTCCAAACTCAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaagacggtgccatggtggaggcgaatgattggaacaaaaactggctggagcacctggtcgatgtaacgctgcgccgttaaaccacgtccatatcattttccaaactcaa
gi|3 : tcgttggaaagaacagctcaatgccaattttaaagcgtgtatagttacgatgaatttgatttatttattttatcacaattggcgtttgaatttacatactgtatttttgacaataactcattttgtaaaaatggcgcctactgttgtaatgtttaaatttcaatatcgcgtgtgtcacccgcgggcattaaccagtgcaacacaacgtcggagcagcgacaagacgagccttcgtagaaattgagtcggtagttggtcccattcctctgctatagcagccctaagttcatgatttgtcctgagatttctggcacgaactctccgtttcaaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACGTCGATGGCTGTGCTTAAAATGTG-CTTCGCAATACGGGCGTCGGCAAAGTATCCCGGCAGCAACTCTGACGCGTCGCCTGGCGGTTCTGGCGCTAATATGCAACCGAGTACGTCCT--TGTGTTGAGAGCAGTGTTACGTCGGACTAAAAATCGGTCTCGCAGATGTGTCAAGGCGATTTGCCGATCCTGACGTAATGTTATTTCTCG--AGGACGTCCAGACCTCGACAGGTCGGCAACAGACCCAGTTGCAACAAATGTCTGGCGTAAATACCG---------AACACTAACCCCGAAATCGTTCACAACACGTAATAGTTG
gi|4 : CTCAACCACACAAGCGTCCGCAAACTTTTCACCAGTACGACGGTAGATGTGCCTACGCCGGTCATTGGAACCGA------ATTTAGATTCATCAGTGAAAAAAAGAACCGATCTCCACTGATTAACCAACTATCTGAGATGTTGCAATGCCCAGTGTAGACGTAAACGTCGATGGCTGTGCTAAAGATGTGTCC-CGCAATACGGGCGTCGGC
gi|5 : GTTCAAACATATTCTATAACATATGTAACAATATAGAGACATACAAAATTA-ACAACAGTGA----CG--TG---ATAACAA-AT-----------TATATAACGTATGCAAATGTAATGAA----CTACAAGTTATA
gi|6 : ctgttatcttgtaaataaatgcacattgttttgtaacgtaaatttatatagtTAAACATCTTTTATGACGTATGC-----ATCAGG----GT----ATGA-ATA----TCA----CA--T----AT--TAC-ATAT-TTACTCTATATATAACATAC-----TG-----AA----CCATTAGTTATAGCAATATCAGTTACAGTcc
gi|7 : tttagcAGTTTAAACTTATTGTTTGACTTATGA-----AAGAGG----GA----ATAA-ACA----TCA----CA--TG---ATAAAAC-ATGTGTTA------ATATAACATTCGCAAATG----GActaaaatgttatcaaaa
gi|8 : gtttAGTTTAAACATATATTATTACTAATGT-----TACACA----TA----TTTA-ACA----TCA----CA--TG---ATAATAC-ATAT-TTA-----TATATAACATACGCAAATGGATTGAA----CCTTAAGTTATAACAAttgaaatcctaaagtacactt
gi|9 : tGTTTACACATATTCTGTTACGTATGT-----TACATA----TA----TCCACACA----T-A----CAACTGAACATAACACGATAC-CAAC----TATATAACATACGCAAATG----GAATGATCTACAAGTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): CTGTTTACTATGTTAAAGTTGAACGTTTTAATC