lowQualScore : 222222222222222222222222222222222222222222222222222222
lowQualScore : 1 1 1 111111111111111111111111111111111111111111111111111111 444444444444 6666666666666666666666666666666 1 1 1 111 7777777777 11 1111 1 1111111 999999999999999999999999999 11111 11 44444444444 333333333333333 1 666666666666666 11 222 1 3 1 1 1 111 111 111 333333333333333333333333 11111111111 4444444444444444 222222 1 1
lowQualScore : 6 8 0 4 555 0 5 7 000000000000000000000000000000000000000000000000000000 111111111111 5 8888888888888888888888888888888 6 7 1 0 0 2 1 1 000 6666666666 77 6 22 5 0 2222 0 3 77 7 77 5 6 6 5 9999999 444444444444444444444444444 55555 4 1 1 6 99 5 6 6 0 00000000000 000000000000000 5 3 1 1 3 8 1 6 88 7 1 0 0 7 555555555555555 9 5 00 444 0 0 5 5 0 0 2 444 0 0 5 0 6 5 000 000 000 7 111111111111111111111111 99999999999 0 5555555555555555 888888 1 1 2
lowQualScore : . . . . ... . . . ...................................................... ............ . ............................... . . . . . . . . ... .......... .. . .. . . .... . . .. . .. . . . . ....... ........................... ..... . . . . .. . . . . ........... ............... . . . . . . . . .. . . . . . ............... . . .. ... . . . . . . . ... . . . . . . ... ... ... . ........................ ........... . ................ ...... . . .
lowQualScore : 0 4 2 0 777 7 0 0 777777777777777777777777777777777777777777777777777777 000000000000 0 8888888888888888888888888888888 7 8 4 6 0 8 7 4 000 4444444444 99 0 77 7 1 1111 4 5 99 6 99 7 0 0 0 0000000 666666666666666666666666666 66666 3 7 3 0 44 0 0 0 7 00000000000 777777777777777 6 2 7 7 6 6 4 3 00 9 9 7 1 0 333333333333333 6 7 99 999 0 0 0 0 0 7 7 777 2 2 0 1 2 0 000 000 000 0 888888888888888888888888 00000000000 7 4444444444444444 555555 2 8 6
consensus : CAGTACAATAAGAAGCACAAACAGACAGACGTTATCTTGATGGACTTTGCCAAAGTCTTCCAAAAAGTACCCCACAAGCGTCTACTATACAAACTAGACCACTACAG-------------------TGT-------------------TG--------GATTGCC------------TCATGGTTATCAGAC-GG---ACA--AGAAGTAGTACTCGACGG--AATGCACTCTGACCAAGCTCCAGTAATATCCGGTGGTTCACCAAGGCTCCTGCCTACGTCCAATTCTCTTCTTATTGTTCATTAACGACCTACCGAACG---GTATA---T-TAT--CATCAAACGTAAGGCTTTTTGCAGATGACTGTC-TCTACAAAAATGTATATTATTCT----TCAGGACTGCATTGAAC--CAGACTNACTTACAGAAACTTGGC--ACATGGTAGCAA-CAGTGGCTCATGAATTCCAATGTATCCAAATGTTACTCAGTGAGAACATCAACCAG-AA-AAAGCAAA-T-----A------A----CCAC---ACTTTACA---TGGACAGACGCTTGACAATGTGAAAGCAACAAAGTATGTGGGGGTTACAATTACTGAAACATTGGACTGGGCGCCACACATTGCATACCAAACTTTAATTCGACCCCAAATCGAGTATGCGTGCGTCTCCACTCCCACATTC--------G------GGGCCAACANACATGAAATTGAAATGGTGCAAAGAACAGCAGCTCAATGGACATGTAGAAGATGGCATAATACTATTCATTTTGGGGACATGCT-------T-A---A-TGCGACGATCAACCCTAGAGT-AAAGACGTACCAATACAAG-TTTGA-CAC-TTTT-TACAAAATGTATAATAGACTGGTTGACATTGACAGAGACCGAC-ACCTAATGACTAACAAAGC-ATCTAGATACTCTNAAAGAATATCTCACCT---ACAAC---AC---GATCAACTGACTGCCTCAACTGTCC-C-------TT----------TTTTCC-----------TCAAGAGTCATA-C-----------CGCTGTGGAATGCTCTTCCAGAATCTACTNTTGCGATGGCTACAGTACATTCTG
Reference ( gi|1 ) : CAGTACAATAAGGAGCAAAAACAGACAGACGTTACCTTGATGGACTTTGCCAAAGTCTTCCAAACAGTACCCCACAAGCATCTACTATACAATCTAGACCACTAC---------------------TGT-------------------TG--------TATTGCC------------TTCTGGTTATCAGACTAG---ACA--AGAAGTTGTACCCGACGA--AATGCACTCAGACTAAGCTCCAGTAATATCCGGTGGTTCACCAAGGCTCTTGCCTAGGTCCAATTCTCTTCCTATTGTTTATTAACGACCTACCAAACG---GTATA-CATGTAT--CATCGAATGTAAGGCTTTTTGCAGATGACTGTC-TCTACAAAAATGTATATTATTCT----TCAGGACGGCATTGAAC--CAGACTAACTTACAGAAACTTGGT--ACATGGTAGCAA-CAGTGGTTCGTGAATTCCAATGTATCCAAATGTTACTCGGTGAGAACATCAACCAG-AA-AAAGCAAA-T-----A------A----CCAT---ACTTTACA---TGGACAGACGCTTGACAATGTAAAAGTAACAAAGTATGTGGGTATTACAATTACTGAAACATTGGACTGGACGCCACACATTGCATACCAAACTTTAATTCAACCCTAAATTGAGTATGCGTGCGTCTCCACTCCCACATTC--------G------GGGCCAACAAACATGAAATTGAAATGGTGCAAAGAACAGCAGCTCAATGGACATGTAGAAGGTGGCATAACACTAGTCATGTTTGGGACATGTT-------T-------TGCGATGATCAACCCTTGAGT-AAAGATGTACCAATACAAG-TTT-A-CAC-TTTT-TACAAAATACATAATAGACTGGTTGACATTGACAGAGACTGAC-ACCTTATGACTAACAAAGC-ATCTAGATACTCTAAAAGAATATCTCCCCT---ACAAC---AT---GATCAACTGACTGCCCCAACTGTCC-C-------TT----------TTTTCC-----------TCAAGAGTC-TA-C-----------CACTGTGGAATGCTCTTCCAGAATCTCCTTTCGCGATGGCTTCATTACATTCTG
gi|7 : CAGCACAGTAAGAAGCA----CAGACAGACGTTATCTTGATGGACTTTGCCATAGTCTTCAAAAAAGTACCCCACAAGTGTCTACTATACAAACTAGACTACTACAG-------------------TGTAAGAGGGACAACCAACCATTG--------GATTGCC------------TTCTGGTTATCACACATG---ACA--C-AAGTAGTACTTGATGG--AACGCACTCTGACCAAGCTCCAGTAATATCGGGTGGTTCACCAAGGCTCTTGCCTATGTCCAATTCTCTTCTTATTGTTTATTAACGACCTACCAAATGTATATATATCATGTATATCATCAAATGTAAGGCTTATTGCAGATGACTGTC-T--ATAAAAATGTATATTATTCT----TCAGGATTGCATTGAAC--CAGACTAACTTACAGAAACTTGGT--ACATGGTAGCAA-CAGCAGCTCATGAATTCCAATGTATCCAAGTCTTACTCAGTGAGAATATCAACCAG-AA-AAAACAAA-TTAAT-A------A----CCACTACACTTTACA---GGGACAGACGCTTGACAATGTAAAAGCAACAAAGTATGTGGGGATTACAATTACTGAAACATTGGACTGGACGCCACATATTGCATACCAAACTTGAATTTGACCCCAAATTGAGTATGCGT-------TACTCCCACATTC--------G------GGGCCAACAAACATGAAATTGAAATGG
gi|3 : AGTACAATAAGAAGCACAAACAGACAGACGTTATCTTGATGGACTTTGCCAA-----TCCAAAAAGTACCCCACAATTGTCTACTATACAAACTAGACCACTAC------------------------------------------------------AGTGCC------------TCATGGTTATCAGAC--------------A-----ACTCAACGG--AATGCACTCCGACCAAGCTCCAGTAATATCTGATGGTTCACCAAGGTTCTTGCCTAGGTCCAATTCTCTTCCTATTGTTTATTAACGACCTACCGAATG---GT------T-TAT--CATCAAACATAAGGCTTTTTGCAGATGACT-----CTACAAAAATGTATATTATTCT----TTAGGACTGCATTGAAC--CAGACT----TACAGAAACTTGGC--ACATGGTAGCAA-GAGTGGCTCATGAATTCCAATGTATCTTAATGTTACTCAGTGAGAACATCAACCAA-AG-AAAGCAAA-TTAATTACC----A----CTAC---ACTTTACA---TTGACAGACGCTTGACAATGTAAAAGCAACAAAATATGTGGGGATTACAATTACTGAAACATTGGACTGGGCGCCACACATTGCATACCAAACTTTAATTCGACCCCAAATTGACTATG---G-GTCTCCACTCCCACATTT--------G------GAGCAAACACACATGAAATTGAAATGGTGCAAAGAACAGCAGCCTAATGGACATGTAGAAGATGGCATAATACTATTCATTTTGGGGACATGCT-------TAACGGATTGCGATGATCAACCCTAGAGTTAAAGATGTAC-AA---AAG-TTTGA-CAC-TTTT-TACAAAATATATAATAGACTGGTTGACATTGACAGAGACCAAC-ACCTAATGACTAACAAAGC-ATCTAGATACTCTAAAAGAATATCTCACCT---ACAAC---AT---GATCAACTGACTGCCTCAACTGT-C-C-------TT----------TTTTCC-----------TCAAGAGTCATA-C-----------CGCTGTGGATTGTTCTTCCAGAATCTACTTTTGCGATTGCTACAGTACATTCT
gi|5 : acaAGTACAATAAGAAGCACAAACAGACGGACATTATCTTGATGGACTTTGCCAAAGTCTTCCAAAAAGTACCCAACAAGCATCTACTATACAAATTAAACCACTACAGTGCGAGTGGGACAACCAACTGT-------------------TG--------GATTGCC------------TCATGGTTATCAGAC--A---ACG--A-AAG---------------AATGCACTCTGACCAAGCTCCAGTAATATCCGGTGGTTCACCAAGGCTCCTGCCTATGTCCAATTCTCTTCTTATTGTTCATTAACGACCTACCGAATG---GTATA-------T--CATCAAACGTAAGGCATTTTGCAGATGACTGTC-TCTACAAAAATGTATATTATTCT----TTAGGACTGCATTGAAC--CAGACTTACTTACAGAAACTTGGC--ACATGGTAGCAA-CAGTGGCTCATGAATTCCAATGTATCCAAATGTTACTCAGTGAGAACATCAACCAGAAA-AAAGCAAATT-----AACTACCA----CTAC---ACTTTACA---TTGACAGACGCTTGACAATGTAAAAGCAACAAAATATGTGGG------GATTACTGAAACATTGGACTGGGCGCCACACATTGCATACAAAACTTTAATTCGACCCCAAATTGAGTA----TGCGTCTCCACTCCCACATTT--------G------GGGCCAACATACATGAAATTGAAATGGTGCAAAGAACATCAGCTCAATGGACATGTAGAAGATGGCATAATATTATTCATTTTGGGGACATGCT-------TGAAAAAATCGGATGATCAACCCTAGAGT-AAAGATGTA-CAA---AAG-TTTGA-CAC-TTTC-TACAAAATGTATAATAGACTGGTTGACATTGACAGAGACCGAC-
gi|21 : caAGTACAATATGAAGCACAAACAGACAGACATTATCTTGATGGACTTTGCCAAAGTCTTCCAAAAAGTACTCCACAAGCATCTACTATACAAACTAGACCACTAC---------------------AGT-------------------
gi|4 : taACAGTAAGAAGCACAAACAGACA-----TACGTT-ATCGA---------------------AGTATCCCACAAGCATCTACTATACAAACTAGACCACTACAGTGTATGAGGGACAACCAACTGT-------------------TG--------GATTGCC------------TCATGGTTATCAGACTGG---ACACAAGAAGTAGTACTTGACAG--AATGCACTCTGACCAAGCTCCAGTAATATCCGG-GGTTCACCAAGGCTCCTGCCTACATCCAATTCTCTTCTTATTGTTCATTAACGACCTACTGAACA---GTATA-------T--CATCAAATGTAAGGCTTTTTGCAGATGACT--C-TCTACAAAAATATATATT-CTCT----TTAGGACTGCATTGAAC--CAGACTAACTTACAGAAACTTGGT--ACATGGTAGAAA-CAGTGGCTCATGAATTTCAATGTTACCAAATGTTACTCAGTGAGAGCATCAACT---------GCAA----------------------------------------GACA----CTTGACAAGGTGAAAGCAACAAAGTATGTGGAGGTTACAATTACTGAAAC-TTGGACTGGACGCCACACATTACATACCAAACTTTAATTTGACCCCAAATCAAGTATGCGT-CG---CCACTCCCACACTCGGGGCGAGG------GGGCCAACAAACATGATATTGAAATGGTGCAAAGA---------CGGTGGACATAT-----------TAA----GGACATGCTTG----ACGAT-------T-------TGCGACGATCAACCCTTGAGT-AAAGACATACCAATACAAGATTTGA-CACTTTTT-TACAAAATGCATATTAAACTGGTTGACAATGACAGAGACCTGC-ACCTAATGACTAACAACGC-ATCTAGATACTCTCATAGAATATCTCGCCT---ACGTC---AT---GATCAACTGACTACCTCAACTG-CT-C-------CT----------TTTTCC-----------TCAGGAGTCGTA-C-----------CACTGTGGAATGCTCTTC-------------TGCGATGGCTACAGTACATTCTGgcaaga
gi|2 : AATAAGAAGCACAAACAGACAGATGTTATCTTGATGGACTTTGCCAAAGCCTTCCAAAAAGTACCCCA
gi|9 : AAGAGGCACTAACAGACAGATGTTATCATTATGGACTTTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaacgacctaccaaatggtttatcatcaaaagtaaggctttttgcagatgactgtctcgagaaaaatgtatattattcttaaggactgcattcaaccagacttacttacagaaacttggcacatggtagcaacagtggctcatgaattccaatgtatccaaatgttactcagtgagaacatcaaccagaaaaagcaaataaccacactttacatggacagatgcttgacaatgtaaaagcaacaaagtatgtcgggattacaattactgaaacattggactgggcgccacacattgcataccaaactttaattcgaccccaaattgactatgcgtctccactcccacatttggggccaacatacataaaattgaaatggtgcaaagaacagcagctcaatggacatgtagaagatggtataatattattcattttggggacatgcttgacaaattgcgatgatcaaccctagagtaaagatgtacaaaagtttgacactttttacaaaatatataatagactggttgacattgacagagaccgacaacctaatgactaacaaagcatctagatactctaaaagaatatctcacctacaacatgatcaactgactacctcaactgtccttttttcctcaagagtcataccgctgtggaatgctcttccagaatttacttttgcgatggctacagtacattc
gi|16 : CATAAAAAGACGGAAGTTAT-TTGATGGACTTTGGCAACGACTTCGACAAAGAACAGCGTAAGTG---AC--TACAAACTTGACCACTAC---------------------GGTG------------------TAAGAGGGGCTATCGCCAGTTCGATTGTATTCTGGTTATTCGGC-AGGACACA--AGCAGTATTACTCGTCGGACAAT--ACTCTGTCCGAGCTCCAATTATATCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacctatcggacggtatatcattaaatgtaaggcttttcgcagatggctgtcacctacaataatataattatattcacatcaggac
gi|6 : agtttTATCAGACTGG---ACACAAGAAGTAGTACTTGACAG--AATGCAGTCTGCCACAGCTCCAGTAATATCTGG-GGTTCACCAAGGCTCCTGCCTACGTCCAGTTCTCTTCTTATTGTTCATTAACGACCTACTGAGTG---GTATA-------T--CATCAAATGTAATGCTTTTTGCAGATGACT--C-TCTACAAAAATATATA--GCTCT----TCAGGACAGTAGTGAAC--CATACTAATTGACAGAAACTTTGT--ACATGGTAGAAA-CAGTGGCTCATGAATTTCAATGTATCCAAATGTTACTCGGTGAGAACATCAACT---------GCAA----------------------------------------GACA----CTTGACAAGGTGAAAGCAACAAAGTATGTGGAGGTTACAATTACTGAAAC-TTAGACTAGATGCCACACATTACATACCAAACTTTAATTTGACCCCAAATCAAGTATGTGT-CG---CCACTCCCACACTC--------GTGGGTTGGGGCAACAAACTTGAAATGGAAATGGTGCAAAG-ACAGT-GATC-----ATATTTAG-----GAC---ACACT--T---------GACA--AT-------T-------TGCGACTATCAACCCTTGAGT-AAAGACATACCAATGCAAGATTG-A-CAC--TTT-TACAAAATGCATAATAAACTGGTTGACAATGACAGAGACCGAC-ACCTAATGACTAACAATGC-ATGTAAATACTCTCAAAGAATATCTCACCT---ACAAC---AT---GATCAACTGACTGCCTCAACTG-CC-C-------TT----------TTTTCC-----------TCAGGA-----------------------GTGGAATGCTCTTCCAAATTCTACATTTGCAATGGCTACAGTACATTCTGt
gi|2 : TAACGACCTACCAAATG---GT------T-TAT--CATCAAAAGTAAGGCTTTTTGCAGATGACTGTC-TCGAGAAAAATGTATATTATTCT----TAAGGACTGCATTCAAC--CAGACTTACTTACAGAAACTTGGC--ACATGGTAGCAA-CAGTGGCTCATGAATTCCAATGTATCCAAATGTTACTCAGTGAGAACATCAACCAG-AA-AAAGCAAA-T-----A------A----CCAC---ACTTTACA---TGGACAGATGCTTGACAATGTAAAAGCAACAAAGTATGTCGGGATTACAATTACTGAAACATTGGACTGGGCGCCACACATTGCATACCAAACTTTAATTCGACCCCAAATTGACTA----TGCGTCTCCACTCCCACATTT--------G------GGGCCAACATACATAAAATTGAAATGGTGCAAAGAACAGCAGCTCAATGGACATGTAGAAGATGGTATAATATTATTCATTTTGGGGACATGCTTGACAAAT-------TGCGATGATCAACCCTAGAGT-AAAGATGTA-CAA---AAG-TTTGA-CAC-TTTT-TACAAAATATATAATAGACTGGTTGACATTGACAGAGACCGACAACCTAATGACTAACAAAGC-ATCTAGATACTCTAAAAGAATATCTCACCT---ACAAC---AT---GATCAACTGACTACCTCAACTGT-C-C-------TT----------TTTTCC-----------TCAAGAGTCATA-C-----------CGCTGTGGAATGCTCTTCCAGAATTTACTTTTGCGATGGCTACAGTACATTCtt
gi|9 : aataagaagcacaaacagacagatgttatcttgatggactttgccaaagccttccaaaaagtaccccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGACCTATCGGACG---GTATA-------T--CATTAAATGTAAGGCTTTTCGCAGATGGCTGTCACCTACAATAATATA-ATTATATTCACATCAGGAC
gi|14 : aagaggcactaacagacagatgttatcattatggactttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTAAACTGCAGAACGACTTGTAGAA-CTTGGTTTA-ACGG-AGCAAACA-TGACTAATGAAGGTCAATGCATCCAAATGTCA--------AAACATGAAA-AT-AACAAAACAAA-T-----A------GATTGCCGTTACACTCTACACTATGGACAGATGGTAAACGAGGTGAAAGCAACAACATACTTGGGGGTTACAATCATCGATACATTAGACTGGACACC
gi|8 : gagttttACCCCAAATTGACTATACGT----CTCCACTCCCACATTT--------T------GGGCCAACATACATGAAATTGAAATGGTGCAAAGAACAGCAGCTCAATGGACATGTTGAAGATGGCATTATACTATTCATTTTGGGGACATGCT-------TGACGAATTGCGATGATCAAATCGAGAGT-AAAGATGTAC-AA---AAG-TTTGA-CAC-TTTT-TACAAAATATATAATAGACTGGTTGGCATTGACAAAGACCGAC-ACCTAATGACTAGCAAAGC-ATCTAGATACTCTAAAAGAATATCTCACCT---ACAACAATAC---AATCAACTGACTGCCTCAACTGTCC----------T----------TTTTCC-----------TCAAGAGTCATG-C-----------CGCTCTGGAACGCTCTTCCAGAATCTACTTTAGCGATGGCTACAGTACATTCTG
gi|11 : gCATACAGGAGATGACATAACACTAGACGTGTTAGGGATATGTT-------T----------GACAATTTATGGTAAAGC-AAAGACATATCAATATAAG-CTT-GTCAT-TTTTTTACAAAATATATAATGGATTGGTTGACGCTAACAGAGACCG---------TAACTATCAAAGC-TGCTAGATACTCTCAATGAATACCTCAACTACAACAAC---AC---GCTCGACTGACTGTAAAAAATGACC-T-------TTAAATTTGTTATTTTCC-----------TCAAGAATCATA-C-----------CACTGTGGAATG--CTTCCATAATCTAATGTTGTCATGACTACAGTAGAGTCT
gi|15 : AATACAAA-TTTTA-CGG-TTTTCTACAAAATGTAAACTGGACTGATTGACATTGGCATAGATTGTT-ATCTTGTGATTAA----------------------AAGAACACCTCACCT---ACATT---GTTGCGATCGACAGACTGTCTCAACTGACC-TTTTAAAGTT----------TTTTCCCCAGAATCATGCCAAGAGTCATG-C-----------CACTATGAAATGTTCTTCTA
gi|26 : ACATAACAGACTGGTTGACATTGCTAGAGAATGTT-GCCTTATCGCCAATAAAGCTATA-AGATACTCTTAAcagtagt
gi|23 : TCAACTGACC-TTTTGATTTTTC-C-------TT----------TTTTTT-----------TCAAAATTCAAA-C-----------CATTATCAAACGCTCTGACAGAATCTATTGTTGGAGTGGCT
gi|10 : aactactgccTGACTGCCTTAACTGACA----------T----------TTTTCC------------CAAGAGTCATAGCAGG--------CACGGCGAAATGCGCTTTCAGAATCTTCTGTTGCCATGGCTTAAGTATATTCac
gi|13 : caattaGTCCTC-------CT----------TTTTCC-----------TTA-GAATC-TA-TATATAGAATAACACTGTGGAATGCTTTTCCAGAACATACTGATGTCATGACTATAGTAGATTCTaatccttatttaatcaaacaaatgagagttggtttatgtacacaactctcacatcaaaattgtaattagtttaaatgctaaggtcagaagtcattttaacttttcattttacatttagacactgtatttaactaatacattatatgcaatttttgcctgtatatatgctatcacactgcagtgacagtattcgaataaagaaagtaactga
gi|27 : tacctcaacttacatgttaaa-C-----------CACTGTGGAATGCTCTTC-------------TGCAATGGCTACAGTACATTCTGttttcttcaaatcttaatttaagacaaaaacacatgaaagttgtttatgcatcaaaattgtaattagtctaaatgttaaggtcagcagtcatttaaacttttcattttaccttgagacactgttcagaacttttaatacgtatatacagtttctaactgcagta
gi|19 : GAATGCTCTTCCAGAATCTAC-----CGATG---TCATtt
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): CTGCATTTTTGAAGTTTTCATTTTTTCTAAAAGTCATACCACGATGTGATGTTCTTACAGAATACACTGTTGACATGGCTGCAGATGATTTCATTAAGTAACAGCTTAAGTGGACATACGAAAATGCGAGTTATGTGTATACATCATACATGTAAATGGTCAGTTGTATTTTTTTTTCATTTTACTGTAATCACCTATACAGCTCCTGACAGTATATATGCCACAACCCTGTTGTTATGATCAGAATATATCTGTTACAATATAGGGAGAAAGAA
Unaligned ( gi|17 ): GCTTACATCATAATTGTAATTAGTTTTAATACTAAGTTCAGTAGTAATTTGTATTTTACTCATTTTACTTTTAGACTCTGTACTCAGTTTTAATATATATACAGTTTCTGACTGCATATATGCCACCACTTTGTGGTAAAAATCAGAATGGATCATTTTTCGGAAGAAAGAAA
Unaligned ( gi|18 ): GTGTTGTATATGCACACAACTCTCACATCATAATTGTAATTAGTTTTAAAATAAAGGTCAATTTTCAGTTTCAATTTGTTCATTTTAATTTTAAACACTGTACGTTTCTGACTGCATATATACCAGCACCCTGTCGTGATAGTCAGTGTTGGAAGAAAGAAAT
Unaligned ( gi|20 ): TTGTAATTAGATTTAATGCAAGGTCAGCAGTAATTTTAACTTTTCGTCTTAACTTTTCACTTAACTTTTAAGACATAAATACAGTTTCTGACTACATATAAGCCACCACCTTGTTGTGATGATC
Unaligned ( gi|22 ): GCTTAACTTTAAACATATATACAGTTTTTTACTGTTATATGCCTCCACTACTCCATGACGATCAGAAATTATCGGTTACAGTTTAGGAAGAAAGAGAAAG
Unaligned ( gi|24 ): ATACAGTTTCTGACTGCATTTATGCTACCACTTTTGATGATCAGAATTAATTCATTGGTGACTATATGGAAGAGAGGGAAAAAGAAA
Unaligned ( gi|25 ): ATACAGTTTCTGACTACATATATGCTACCACTGTCTTGATGATCAGAATTCATTGGTGACTATATGGAAGAGAGAGAAAAAGA
Unaligned ( gi|28 ): TGATATCCTAACTTAATAAGATATGTAAAATGGAGTTGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111
lowQualScore : 88888888888888888888888888888888888888888888888888888888888 55555555555555 444444444 1111 1111111 666666666666666666666666666666 11111 2222 222222222222222 777777777777 111 1111111 444444444444444444444444444444444444 11111111111 1111111111
lowQualScore : 0 0 11111111111111111111111111111111111111111111111111111111111 3 44444444444444 0 22 77 1 5 7 3 888 3 444444444 3 8 5 0000 66 5 66 5 0000000 111111111111111111111111111111 11111 2 0 4 3 2 666 3333 555555555555555 1 1 0 0 2 3 0 33 11 777777777777 0 5 77 999 4 4 8 2 4 2 2 4 2 888 0000000 3 111111111111111111111111111111111111 55555555555 4444444444 3 555 3 44 3 3
lowQualScore : . . ........................................................... . .............. . .. .. . . . . ... . ......... . . . .... .. . .. . ....... .............................. ..... . . . . . ... .... ............... . . . . . . . .. .. ............ . . .. ... . . . . . . . . . ... ....... . .................................... ........... .......... . ... . .. . .
lowQualScore : 1 1 11111111111111111111111111111111111111111111111111111111111 0 00000000000000 7 33 99 7 7 3 7 888 2 666666666 1 8 0 6666 99 9 99 0 8888888 111111111111111111111111111111 22222 5 2 2 2 0 000 0000 666666666666666 0 4 1 4 0 9 2 22 55 555555555555 8 0 00 000 4 4 9 6 0 3 0 4 6 888 4444444 6 000000000000000000000000000000000000 88888888888 6666666666 1 444 0 22 2 3
consensus : CAGTACAATAAGAAGCACAAACAGACAGACGTTATCTTGATGGACTTTGCCAAAGTCTTCCAAAAAGTACCCCACAAGCGTCTACTATACAAACTAGACCACTACAGT-------------------G-------------------T-------------------TGGATTGCCTCNTGGTTATCAGACTA-G---ACA--AGAAGTAGTACTCGACGG--AATGCACTCTGACCA-AGCTCCAGTAATATCCGGTGGTTCACCAAGGCTCCTGCCTACGTCCAATTCTCTTCTTATTGTTCATTAACGACCTACCGAACG---GTATAT------TATCATCAAACGTAAGGCTTTTTGCAGATGACTGTC-TCTACAAAAATGTATATTATTCT----TCAGGACTGCATTGAAC--CAGACTAACTTACAGAAACTTGGT--ACATGGTAGCAA-CAGTGGCTCATGAATTCCAATGTATCCAAATGTTACTCGGTGAGAACATCAACCAG-AA-AAAGCA----AA-T-----A------A----CC---ACACTTTACA---TGGACAGACGCTTGACAATGTAAAAGCAACAAAGTATGTGGGGGTTACAATTACTGAAACATTGGACTGGACGCCACACATTGCATACCAAACTTTAATTCGACCCCAAATCGAGTATGCGTGCGTCTCCACTCCCACATTC--------G------GGGCCAACANACATGAAATTGAAATGGTGCAAAGAACAGCAGCTCAATGGACATGTAGAAGATGGCATAATACTATTCATTTTGGGGACATGCTT-----GACGA-TTGCGACGATCAACCCTAGAGT-AAAGACGTACCAATACAAG-TTTGACAC-TTTT-TACAAAATGTATAATAGACTGGTTGACATTGACAGAGACCGAC-ACCTAATGACTAACAAAGCATCT-AGATACTCTNAAAGAATATCTCACCT---ACAAC---A---CGATCAACTGAC-TGCCTCAACTG------------TCC-C-------TT----------TTTTCC-----------TCAAGAGTC----------ATA-C---CAC--TGTGGAATGCTCTTCCAGAATCTACTGTTGCGATGGCTACAGTACATTCTG
Reference ( family-1014 ) : CAGTACAATAAGAAGCACAAACAGACAGACGTTATCTTGATGGACTTTGCCAAAGTCTTCCAAAAAGTACCCCACAAGCGTCTACTATACAAACTAGACCACTACAGT-------------------G-------------------T-------------------TGGATTGCCTCATGGTTATCAGAC-G-G---ACA--AGAAGTAGTACTCGACGG--AATGCACTCTGACCA-AGCTCCAGTAATATCCGGTGGTTCACCAAGGCTCCTGCCTACGTCCAATTCTCTTCTTATTGTTCATTAACGACCTACCGAACG---GTATAT------TATCATCAAACGTAAGGCTTTTTGCAGATGACTGTC-TCTACAAAAATGTATATTATTCT----TCAGGACTGCATTGAAC--CAGACTNACTTACAGAAACTTGGC--ACATGGTAGCAA-CAGTGGCTCATGAATTCCAATGTATCCAAATGTTACTCAGTGAGAACATCAACCAG-AA-AAAGCA----AA-T-----A------A----CC---ACACTTTACA---TGGACAGACGCTTGACAATGTGAAAGCAACAAAGTATGTGGGGGTTACAATTACTGAAACATTGGACTGGGCGCCACACATTGCATACCAAACTTTAATTCGACCCCAAATCGAGTATGCGTGCGTCTCCACTCCCACATTC--------G------GGGCCAACANACATGAAATTGAAATGGTGCAAAGAACAGCAGCTCAATGGACATGTAGAAGATGGCATAATACTATTCATTTTGGGGACATGCTT-----AA-----TGCGACGATCAACCCTAGAGT-AAAGACGTACCAATACAAG-TTTGACAC-TTTT-TACAAAATGTATAATAGACTGGTTGACATTGACAGAGACCGAC-ACCTAATGACTAACAAAGCATCT-AGATACTCTNAAAGAATATCTCACCT---ACAAC---A---CGATCAACTGAC-TGCCTCAACTG------------TCC-C-------TT----------TTTTCC-----------TCAAGAGTC----------ATA-C---CGC--TGTGGAATGCTCTTCCAGAATCTACTNTTGCGATGGCTACAGTACATTCTG
gi|1 : CAGTACAATAAGGAGCAAAAACAGACAGACGTTACCTTGATGGACTTTGCCAAAGTCTTCCAAACAGTACCCCACAAGCATCTACTATACAATCTAGACCACTAC--T-------------------G-------------------T-------------------TGTATTGCCTTCTGGTTATCAGACTA-G---ACA--AGAAGTTGTACCCGACGA--AATGCACTCAGACTA-AGCTCCAGTAATATCCGGTGGTTCACCAAGGCTCTTGCCTAGGTCCAATTCTCTTCCTATTGTTTATTAACGACCTACCAAACG---GTATACATG---TATCATCGAATGTAAGGCTTTTTGCAGATGACTGTC-TCTACAAAAATGTATATTATTCT----TCAGGACGGCATTGAAC--CAGACTAACTTACAGAAACTTGGT--ACATGGTAGCAA-CAGTGGTTCGTGAATTCCAATGTATCCAAATGTTACTCGGTGAGAACATCAACCAG-AA-AAAGCA----AA-T-----A------A----CC---ATACTTTACA---TGGACAGACGCTTGACAATGTAAAAGTAACAAAGTATGTGGGTATTACAATTACTGAAACATTGGACTGGACGCCACACATTGCATACCAAACTTTAATTCAACCCTAAATTGAGTATGCGTGCGTCTCCACTCCCACATTC--------G------GGGCCAACAAACATGAAATTGAAATGGTGCAAAGAACAGCAGCTCAATGGACATGTAGAAGGTGGCATAACACTAGTCATGTTTGGGACATGTTT------------TGCGATGATCAACCCTTGAGT-AAAGATGTACCAATACAAG-TTT-ACAC-TTTT-TACAAAATACATAATAGACTGGTTGACATTGACAGAGACTGAC-ACCTTATGACTAACAAAGCATCT-AGATACTCTAAAAGAATATCTCCCCT---ACAAC---A---TGATCAACTGAC-TGCCCCAACTG------------TCC-C-------TT----------TTTTCC-----------TCAAGAGTC-----------TA-C---CAC--TGTGGAATGCTCTTCCAGAATCTCCTTTCGCGATGGCTTCATTACATTCTG
gi|10 : TGAC-TGCCTTAACTG------------ACA----------T----------TTTTCC------------CAAGAGTC----------ATAGCAGGCAC--GGCGAAATGCGCTTTCAGAATCTTCTGTTGCCATGGCTTAAGTATATTC
gi|11 : caattaCATACAGGAGATGACATAACACTAGACGTGTTAGGGATATGTTT---------------GACAATTTATGGTAAAGC-AAAGACATATCAATATAAG-CTTGTCAT-TTTTTTACAAAATATATAATGGATTGGTTGACGCTAACAGAGACCG---------TAACTATCAAAGCTGCT-AGATACTCTCAATGAATACCTCAACTACAACAAC---A---CGCTCGACTGAC-TGTAAAAAATG------------ACC-T-------TTAAATTTGTTATTTTCC-----------TCAAGAATC----------ATA-C---CAC--TGTGGAATG--CTTCCATAATCTAATGTTGTCATGACTACAGTAGAGTCTaatccttatttaatcaaacaaatgagagttggtttatgtacacaactctcacatcaaaattgtaattagtttaaatgctaaggtcagaagtcattttaacttttcattttacatttagacactgtatttaactaatacattatatgcaatttttgcctgtatatatgctatcacactgcagtgacagtattcgaataaagaaagtaactga
gi|12 : T----------TTTTTC-----------T-AAAAGTC----------ATA-C---CACGATGTG--ATGTTCTTACAGAATACACTGTTGACATGGCTGCAG
gi|13 : ctgcatttttgaagttttcaTCAACTTACATGT-TAAA--G------------TCCTC-------CT----------TTTTCC-----------TTA-GAATCTATATATAGAATA-A---CAC--TGTGGAATGCTTTTCCAGAACATACTGATGTCATGACTATAGTAGATTCTatgatttcattaagtaacagcttaagtggacatacgaaaatgcgagttatgtgtatacatcatacatgtaaatggtcagttgtatttttttttcattttactgtaatcacctatacagctcctgacagtatatatgccacaaccctgttgttatgatcagaatatatctgttacaatatagggagaaagaa
gi|14 : taccATTAAACTGCAGAACGACTTGTAGAA-CTTGGTTTA-ACGG-AGCAAACA-TGACTAATGAAGGTCAATGCATCCAAATGTCA--------AAACATGAAA-AT-AACAAAACA----AA-T-----A------GATTGCCGTTACACTCTACACTATGGACAGATGGTAAACGAGGTGAAAGCAACAACATACTTGGGGGTTACAATCATCGATACATTAGACTGGACACCttttcttcaaatcttaatttaagacaaaaacacatgaaagttgtttatgcatcaaaattgtaattagtctaaatgttaaggtcagcagtcatttaaacttttcattttaccttgagacactgttcagaacttttaatacgtatatacagtttctaactgcagta
gi|15 : gagttttAATACAAA-TTTTACGG-TTTTCTACAAAATGTAAACTGGACTGATTGACATTGGCATAGATTGTT-ATCTTGTGATTAA----------------------AAGAACACCTCACCT---ACATT---GTTGCGATCGACAGAC-TGTCTCAACTG------------ACC-TTTTAAAGTT----------TTTTCCCCAGAATCATGCCAAGAGTC----------ATG-C---CAC--TATGAAATGTTCTTCTA
gi|16 : CATAAAAAGACGGAAGTTAT-TTGATGGACTTTGGCAACGACTTCGACAAAGAACAGCGTAAGTG---AC--TACAAACTTGACCACTACGGTGTAAGAGGGGCTATCGCCAG-------------------T-------------------TCGATTGTATTCTGGTTATTCGGC-A-GGACACA--AGCAGTATTACTCGTCGGACAAT--ACTCTGTCCG-AGCTCCAATTATATCcagtagt
gi|19 : agtttGAATGCTCTTCCAGAATCTACCGATGTCATTGGTACAGTt
gi|2 : acttactttctgtcaacaattaaagctgaaagaccAATAAGAAGCACAAACAGACAGATGTTATCTTGATGGACTTTGCCAAAGCCTTCCAAAAAGTACCCCAtgattattttaagtcaaatcttaattagacaaaaaaaatgagttgtatatgcacacatctctcatatcaaaagtttgt
gi|2 : TAACGACCTACCAAATG---GT---T------TATCATCAAAAGTAAGGCTTTTTGCAGATGACTGTC-TCGAGAAAAATGTATATTATTCT----TAAGGACTGCATTCAAC--CAGACTTACTTACAGAAACTTGGC--ACATGGTAGCAA-CAGTGGCTCATGAATTCCAATGTATCCAAATGTTACTCAGTGAGAACATCAACCAG-AA-AAAGCA----AA-T-----A------A----CC---ACACTTTACA---TGGACAGATGCTTGACAATGTAAAAGCAACAAAGTATGTCGGGATTACAATTACTGAAACATTGGACTGGGCGCCACACATTGCATACCAAACTTTAATTCGACCCCAAATTGACTA----TGCGTCTCCACTCCCACATTT--------G------GGGCCAACATACATAAAATTGAAATGGTGCAAAGAACAGCAGCTCAATGGACATGTAGAAGATGGTATAATATTATTCATTTTGGGGACATGCTT-----GACAAATTGCGATGATCAACCCTAGAGT-AAAGATGTA-CAA---AAG-TTTGACAC-TTTT-TACAAAATATATAATAGACTGGTTGACATTGACAGAGACCGACAACCTAATGACTAACAAAGCATCT-AGATACTCTAAAAGAATATCTCACCT---ACAAC---A---TGATCAACTGAC-TACCTCAACTG------------T-C-C-------TT----------TTTTCC-----------TCAAGAGTC----------ATA-C---CGC--TGTGGAATGCTCTTCCAGAATTTACTTTTGCGATGGCTACAGTACATTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaacgacctaccaaatggtttatcatcaaaagtaaggctttttgcagatgactgtctcgagaaaaatgtatattattcttaaggactgcattcaaccagacttacttacagaaacttggcacatggtagcaacagtggctcatgaattccaatgtatccaaatgttactcagtgagaacatcaaccagaaaaagcaaataaccacactttacatggacagatgcttgacaatgtaaaagcaacaaagtatgtcgggattacaattactgaaacattggactgggcgccacacattgcataccaaactttaattcgaccccaaattgactatgcgtctccactcccacatttggggccaacatacataaaattgaaatggtgcaaagaacagcagctcaatggacatgtagaagatggtataatattattcattttggggacatgcttgacaaattgcgatgatcaaccctagagtaaagatgtacaaaagtttgacactttttacaaaatatataatagactggttgacattgacagagaccgacaacctaatgactaacaaagcatctagatactctaaaagaatatctcacctacaacatgatcaactgactacctcaactgtccttttttcctcaagagtcataccgctgtggaatgctcttccagaatttacttttgcgatggctacagtacattc
gi|21 : aataagaagcacaaacagacagatgttatcttgatggactttgccaaagccttccaaaaagtaccccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGTACAATATGAAGCACAAACAGACAGACATTATCTTGATGGACTTTGCCAAAGTCTTCCAAAAAGTACTCCACAAGCATCTACTATACAAACTAGACCACTACAGT-------------------G-------------------
gi|23 : taAACT-AC-TGCCTCAACTGACCTTTTGATTTTTC-C-------TT----------TTTTTT-----------TCAAAATTC----------AAA-C---CAT--TATCAAACGCTCTGACAGAATCTATTGTTGGAGTGGCTACcaaga
gi|26 : ATAACAGACTGGTTGACATTGCTAGAGAATGTT-GCCTTATCGCCAATAAAGC-TATAAGATACTCTTAA
gi|27 : ac-C---CAC--TGTGGAATGCTCTTC-------------TGCAATGGCTACAGTACATTCTG
gi|3 : AGTACAATAAGAAGCACAAACAGACAGACGTTATCTTGATGGACTTTGCCAA-----TCCAAAAAGTACCCCACAATTGTCTACTATACAAACTAGACCACTACAGT-------------------G----------------------------------------------CCTCATGGTTATCAGAC-A-------------------ACTCAACGG--AATGCACTCCGACCA-AGCTCCAGTAATATCTGATGGTTCACCAAGGTTCTTGCCTAGGTCCAATTCTCTTCCTATTGTTTATTAACGACCTACCGAATG---GT---T------TATCATCAAACATAAGGCTTTTTGCAGATGACT-----CTACAAAAATGTATATTATTCT----TTAGGACTGCATTGAAC--CAGACT----TACAGAAACTTGGC--ACATGGTAGCAA-GAGTGGCTCATGAATTCCAATGTATCTTAATGTTACTCAGTGAGAACATCAACCAA-AG-AAAGCA----AA-TTAATTACC----A----CT---ACACTTTACA---TTGACAGACGCTTGACAATGTAAAAGCAACAAAATATGTGGGGATTACAATTACTGAAACATTGGACTGGGCGCCACACATTGCATACCAAACTTTAATTCGACCCCAAATTGACTATG---G-GTCTCCACTCCCACATTT--------G------GAGCAAACACACATGAAATTGAAATGGTGCAAAGAACAGCAGCCTAATGGACATGTAGAAGATGGCATAATACTATTCATTTTGGGGACATGCTT-----AACGGATTGCGATGATCAACCCTAGAGTTAAAGATGTAC-AA---AAG-TTTGACAC-TTTT-TACAAAATATATAATAGACTGGTTGACATTGACAGAGACCAAC-ACCTAATGACTAACAAAGCATCT-AGATACTCTAAAAGAATATCTCACCT---ACAAC---A---TGATCAACTGAC-TGCCTCAACTG------------T-C-C-------TT----------TTTTCC-----------TCAAGAGTC----------ATA-C---CGC--TGTGGATTGTTCTTCCAGAATCTACTTTTGCGATTGCTACAGTACATTCTtt
gi|4 : acaACAGTAAGAAGCACAAACA----GACAT-----------ACGTTATCGAAGT------------ATCCCACAAGCATCTACTATACAAACTAGACCACTACAGT-------------------G-------------------TATGAGGGACAACCAACTGTTGGATTGCCTCATGGTTATCAGACTG-G---ACACAAGAAGTAGTACTTGACAG--AATGCACTCTGACCA-AGCTCCAGTAATATCCGG-GGTTCACCAAGGCTCCTGCCTACATCCAATTCTCTTCTTATTGTTCATTAACGACCTACTGAACA---GTATAT---------CATCAAATGTAAGGCTTTTTGCAGATGACT--C-TCTACAAAAATATATATT-CTCT----TTAGGACTGCATTGAAC--CAGACTAACTTACAGAAACTTGGT--ACATGGTAGAAA-CAGTGGCTCATGAATTTCAATGTTACCAAATGTTACTCAGTGAGAGCATCAACT---------GCA----A----------------------------------------GACA----CTTGACAAGGTGAAAGCAACAAAGTATGTGGAGGTTACAATTACTGAAAC-TTGGACTGGACGCCACACATTACATACCAAACTTTAATTTGACCCCAAATCAAGTATGCGT-CG---CCACTCCCACACTCGGGGCGAGG------GGGCCAACAAACATGATATTGAAATGGTGCAAAGA---------CGGTGGACATAT-----------TAA---------------GGACATGCTT-----GACGATTTGCGACGATCAACCCTTGAGT-AAAGACATACCAATACAAGATTTGACACTTTTT-TACAAAATGCATATTAAACTGGTTGACAATGACAGAGACCTGC-ACCTAATGACTAACAACGCATCT-AGATACTCTCATAGAATATCTCGCCT---ACGTC---A---TGATCAACTGAC-TACCTCAACTG-------------CT-C-------CT----------TTTTCC-----------TCAGGAGTC----------GTA-C---CAC--TGTGGAATGCTCTTC-------------TGCGATGGCTACAGTACATTCTG
gi|5 : AGTACAATAAGAAGCACAAACAGACGGACATTATCTTGATGGACTTTGCCAAAGTCTTCCAAAAAGTACCCAACAAGCATCTACTATACAAATTAAACCACTACAGT-------------------GCGAGTGGGACAACCAACTGT-------------------TGGATTGCCTCATGGTTATCAGAC--------------AA--------CGAAAG--AATGCACTCTGACCA-AGCTCCAGTAATATCCGGTGGTTCACCAAGGCTCCTGCCTATGTCCAATTCTCTTCTTATTGTTCATTAACGACCTACCGAATG---GTATAT---------CATCAAACGTAAGGCATTTTGCAGATGACTGTC-TCTACAAAAATGTATATTATTCT----TTAGGACTGCATTGAAC--CAGACTTACTTACAGAAACTTGGC--ACATGGTAGCAA-CAGTGGCTCATGAATTCCAATGTATCCAAATGTTACTCAGTGAGAACATCAACCAGAAA-AAAGCA----AATT-----AACTACCA----CT---ACACTTTACA---TTGACAGACGCTTGACAATGTAAAAGCAACAAAATATGTGGGG------ATTACTGAAACATTGGACTGGGCGCCACACATTGCATACAAAACTTTAATTCGACCCCAAATTGAGTA----TGCGTCTCCACTCCCACATTT--------G------GGGCCAACATACATGAAATTGAAATGGTGCAAAGAACATCAGCTCAATGGACATGTAGAAGATGGCATAATATTATTCATTTTGGGGACATGCTTGAAAAAA-----TCGGATGATCAACCCTAGAGT-AAAGATGTA-CAA---AAG-TTTGACAC-TTTC-TACAAAATGTATAATAGACTGGTTGACATTGACAGAGACCGAC-
gi|6 : caTATCAGACTG-G---ACACAAGAAGTAGTACTTGACAG--AATGCAGTCTG-CCACAGCTCCAGTAATATCTGG-GGTTCACCAAGGCTCCTGCCTACGTCCAGTTCTCTTCTTATTGTTCATTAACGACCTACTGAGTG---GTATAT---------CATCAAATGTAATGCTTTTTGCAGATGACT--C-TCTACAAAAATATATA--GCTCT----TCAGGACAGTAGTGAAC--CATACTAATTGACAGAAACTTTGT--ACATGGTAGAAA-CAGTGGCTCATGAATTTCAATGTATCCAAATGTTACTCGGTGAGAACATCAACT---------GCA----A----------------------------------------GACA----CTTGACAAGGTGAAAGCAACAAAGTATGTGGAGGTTACAATTACTGAAAC-TTAGACTAGATGCCACACATTACATACCAAACTTTAATTTGACCCCAAATCAAGTATGTGT-CG---CCACTCCCACACTC--------GTGGGTTGGGGCAACAAACTTGAAATGGAAATGGTGCAAAG-ACAGT-GATC-----ATATTTAG-----GACA----------CACTT----GACA--ATT------------TGCGACTATCAACCCTTGAGT-AAAGACATACCAATGCAAG-ATTGACAC--TTT-TACAAAATGCATAATAAACTGGTTGACAATGACAGAGACCGAC-ACCTAATGACTAACAATGCATGT-AAATACTCTCAAAGAATATCTCACCT---ACAAC---A---TGATCAACTGAC-TGCCTCAACTG-------------CC-C-------TT----------TTTTCC-----------TCAGGA---------------------------GTGGAATGCTCTTCCAAATTCTACATTTGCAATGGCTACAGTACATTCTG
gi|7 : CAGCACAGTAAGAAGCACA----GACAGACGTTATCTTGATGGACTTTGCCATAGTCTTCAAAAAAGTACCCCACAAGTGTCTACTATACAAACTAGACTACTACAGT-------------------G-------------------TAAGAGGGACAACCAACCATTGGATTGCCTTCTGGTTATCACAC-ATG---ACA--C-AAGTAGTACTTGATGG--AACGCACTCTGACCA-AGCTCCAGTAATATCGGGTGGTTCACCAAGGCTCTTGCCTATGTCCAATTCTCTTCTTATTGTTTATTAACGACCTACCAAATGTATATATATCATGTATATCATCAAATGTAAGGCTTATTGCAGATGACTGTC-T--ATAAAAATGTATATTATTCT----TCAGGATTGCATTGAAC--CAGACTAACTTACAGAAACTTGGT--ACATGGTAGCAA-CAGCAGCTCATGAATTCCAATGTATCCAAGTCTTACTCAGTGAGAATATCAACCAG-AA-AAAACAAATTAA-T-----A------A----CCACTACACTTTACA---GGGACAGACGCTTGACAATGTAAAAGCAACAAAGTATGTGGGGATTACAATTACTGAAACATTGGACTGGACGCCACATATTGCATACCAAACTTGAATTTGACCCCAAATTGAGTATGCGT-------TACTCCCACATTC--------G------GGGCCAACAAACATGAAATTGAAATGGtt
gi|8 : GACCCCAAATTGACTATACGT----CTCCACTCCCACATTT--------T------GGGCCAACATACATGAAATTGAAATGGTGCAAAGAACAGCAGCTCAATGGACATGTTGAAGATGGCATTATACTATTCATTTTGGGGACATGCTT-----GACGAATTGCGATGATCAAATCGAGAGT-AAAGATGTAC-AA---AAG-TTTGACAC-TTTT-TACAAAATATATAATAGACTGGTTGGCATTGACAAAGACCGAC-ACCTAATGACTAGCAAAGCATCT-AGATACTCTAAAAGAATATCTCACCT---ACAACAATA---CAATCAACTGAC-TGCCTCAACTG------------TCC----------T----------TTTTCC-----------TCAAGAGTC----------ATG-C---CGC--TCTGGAACGCTCTTCCAGAATCTACTTTAGCGATGGCTACAGTACATTCTG
gi|9 : AAGAGGCACTAACAGACAGATGTTATCATTATGGACTTTG
gi|9 : GACCTATCGGACG---GTATAT---------CATTAAATGTAAGGCTTTTCGCAGATGGCTGTCACCTACAATAATATA-ATTATATTCACATCAGGACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacctatcggacggtatatcattaaatgtaaggcttttcgcagatggctgtcacctacaataatataattatattcacatcaggac
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GCTTACATCATAATTGTAATTAGTTTTAATACTAAGTTCAGTAGTAATTTGTATTTTACTCATTTTACTTTTAGACTCTGTACTCAGTTTTAATATATATACAGTTTCTGACTGCATATATGCCACCACTTTGTGGTAAAAATCAGAATGGATCATTTTTCGGAAGAAAGAAA
Unaligned ( gi|18 ): GTGTTGTATATGCACACAACTCTCACATCATAATTGTAATTAGTTTTAAAATAAAGGTCAATTTTCAGTTTCAATTTGTTCATTTTAATTTTAAACACTGTACGTTTCTGACTGCATATATACCAGCACCCTGTCGTGATAGTCAGTGTTGGAAGAAAGAAAT
Unaligned ( gi|20 ): TTGTAATTAGATTTAATGCAAGGTCAGCAGTAATTTTAACTTTTCGTCTTAACTTTTCACTTAACTTTTAAGACATAAATACAGTTTCTGACTACATATAAGCCACCACCTTGTTGTGATGATC
Unaligned ( gi|22 ): GCTTAACTTTAAACATATATACAGTTTTTTACTGTTATATGCCTCCACTACTCCATGACGATCAGAAATTATCGGTTACAGTTTAGGAAGAAAGAGAAAG
Unaligned ( gi|24 ): ATACAGTTTCTGACTGCATTTATGCTACCACTTTTGATGATCAGAATTAATTCATTGGTGACTATATGGAAGAGAGGGAAAAAGAAA
Unaligned ( gi|25 ): ATACAGTTTCTGACTACATATATGCTACCACTGTCTTGATGATCAGAATTCATTGGTGACTATATGGAAGAGAGAGAAAAAGA
Unaligned ( gi|28 ): TGATATCCTAACTTAATAAGATATGTAAAATGGAGTTGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111
lowQualScore : 88888888888888888888888888888888888888888888888888888888888 4444444444444 444444444 1111 1111111 666666666666666666666666666666 11111 2222 222222222222222 1111111 1 111 1111111 444444444444444444444444444444444444 11111111111 1111111111
lowQualScore : 0 0 11111111111111111111111111111111111111111111111111111111111 1 2222222222222 0 4 77 1 5 7 3 888 3 444444444 3 8 5 0000 66 5 66 5 3 0000000 111111111111111111111111111111 11111 2 0 4 3 2 666 3333 555555555555555 1 1 0 0 2 3 0 33 11 7777777 5 5 5 0 5 0 999 4 4 8 2 4 2 2 4 2 888 0000000 3 111111111111111111111111111111111111 55555555555 4444444444 3 555 44 3 3
lowQualScore : . . ........................................................... . ............. . . .. . . . . ... . ......... . . . .... .. . .. . . ....... .............................. ..... . . . . . ... .... ............... . . . . . . . .. .. ....... . . . . . . ... . . . . . . . . . ... ....... . .................................... ........... .......... . ... .. . .
lowQualScore : 1 1 11111111111111111111111111111111111111111111111111111111111 0 9999999999999 7 3 99 7 7 3 7 888 2 666666666 1 8 0 6666 99 5 99 0 1 8888888 111111111111111111111111111111 22222 5 2 2 2 0 000 0000 666666666666666 0 4 1 4 0 9 2 22 55 4444444 0 6 1 8 0 8 000 4 4 9 6 0 3 0 4 6 888 4444444 6 000000000000000000000000000000000000 88888888888 6666666666 1 444 22 5 3
consensus : CAGTACAATAAGAAGCACAAACAGACAGACGTTATCTTGATGGACTTTGCCAAAGTCTTCCAAAAAGTACCCCACAAGCGTCTACTATACAAACTAGACCACTACAGT-------------------G-------------------T-------------------TGGATTGCCTCNTGGTTATCAGACTGG---ACA--AGAAGTAGTACTCGACGG--AATGCACTCTGACCA-AGCTCCAGTAATATCCGGTGGTTCACCAAGGCTCCTGCCTACGTCCAATTCTCTTCTTATTGTTCATTAACGACCTACCGAACG---GTATAT------TATCATCAAACGTAAGGCTTTTTGCAGATGACTGTC-TCTACAAAAATGTATATTATTCT----TCAGGACTGCATTGAAC--CAGACTAACTTACAGAAACTTGGT--ACATGGTAGCAA-CAGTGGCTCATGAATTCCAATGTATCCAAATGTTACTCGGTGAGAACATCAACCAG-AA-AAAGCA----AA-T-----A------A----CC---ACACTTTACA---TGGACAGACGCTTGACAATGTAAAAGCAACAAAGTATGTGGGGGTTACAATTACTGAAACATTGGACTGGACGCCACACATTGCATACCAAACTTTAATTCGACCCCAAATCGAGTATGCGTGCGTCTCCACTCCCACATTC--------G------GGGCCAACANACATGAAATTGAAATGGTGCAAAGAACAGCAGCTCAATGGACATGTAGAAGATGGCATAATACTATTCATTTTGGGGACATGCTTG--AC-G-A-TTGCGATGATCAACCCTAGAGT-AAAGACGTACCAATACAAG-TTTGACAC-TTTT-TACAAAATGTATAATAGACTGGTTGACATTGACAGAGACCGAC-ACCTAATGACTAACAAAGCATCT-AGATACTCTNAAAGAATATCTCACCT---ACAAC---A---CGATCAACTGAC-TGCCTCAACTG------------TCC-C-------TT----------TTTTCC-----------TCAAGAGTC----------ATA-C---CAC--TGTGGAATGCTCTTCCAGAATCTACTGTTGCGATGGCTACAGTACATTCTG
Reference ( family-1014 ) : CAGTACAATAAGAAGCACAAACAGACAGACGTTATCTTGATGGACTTTGCCAAAGTCTTCCAAAAAGTACCCCACAAGCGTCTACTATACAAACTAGACCACTACAGT-------------------G-------------------T-------------------TGGATTGCCTCNTGGTTATCAGACTAG---ACA--AGAAGTAGTACTCGACGG--AATGCACTCTGACCA-AGCTCCAGTAATATCCGGTGGTTCACCAAGGCTCCTGCCTACGTCCAATTCTCTTCTTATTGTTCATTAACGACCTACCGAACG---GTATAT------TATCATCAAACGTAAGGCTTTTTGCAGATGACTGTC-TCTACAAAAATGTATATTATTCT----TCAGGACTGCATTGAAC--CAGACTAACTTACAGAAACTTGGT--ACATGGTAGCAA-CAGTGGCTCATGAATTCCAATGTATCCAAATGTTACTCGGTGAGAACATCAACCAG-AA-AAAGCA----AA-T-----A------A----CC---ACACTTTACA---TGGACAGACGCTTGACAATGTAAAAGCAACAAAGTATGTGGGGGTTACAATTACTGAAACATTGGACTGGACGCCACACATTGCATACCAAACTTTAATTCGACCCCAAATCGAGTATGCGTGCGTCTCCACTCCCACATTC--------G------GGGCCAACANACATGAAATTGAAATGGTGCAAAGAACAGCAGCTCAATGGACATGTAGAAGATGGCATAATACTATTCATTTTGGGGACATGCTTG--AC-G-A-TTGCGACGATCAACCCTAGAGT-AAAGACGTACCAATACAAG-TTTGACAC-TTTT-TACAAAATGTATAATAGACTGGTTGACATTGACAGAGACCGAC-ACCTAATGACTAACAAAGCATCT-AGATACTCTNAAAGAATATCTCACCT---ACAAC---A---CGATCAACTGAC-TGCCTCAACTG------------TCC-C-------TT----------TTTTCC-----------TCAAGAGTC----------ATA-C---CAC--TGTGGAATGCTCTTCCAGAATCTACTGTTGCGATGGCTACAGTACATTCTG
gi|1 : CAGTACAATAAGGAGCAAAAACAGACAGACGTTACCTTGATGGACTTTGCCAAAGTCTTCCAAACAGTACCCCACAAGCATCTACTATACAATCTAGACCACTAC--T-------------------G-------------------T-------------------TGTATTGCCTTCTGGTTATCAGACTAG---ACA--AGAAGTTGTACCCGACGA--AATGCACTCAGACTA-AGCTCCAGTAATATCCGGTGGTTCACCAAGGCTCTTGCCTAGGTCCAATTCTCTTCCTATTGTTTATTAACGACCTACCAAACG---GTATACATG---TATCATCGAATGTAAGGCTTTTTGCAGATGACTGTC-TCTACAAAAATGTATATTATTCT----TCAGGACGGCATTGAAC--CAGACTAACTTACAGAAACTTGGT--ACATGGTAGCAA-CAGTGGTTCGTGAATTCCAATGTATCCAAATGTTACTCGGTGAGAACATCAACCAG-AA-AAAGCA----AA-T-----A------A----CC---ATACTTTACA---TGGACAGACGCTTGACAATGTAAAAGTAACAAAGTATGTGGGTATTACAATTACTGAAACATTGGACTGGACGCCACACATTGCATACCAAACTTTAATTCAACCCTAAATTGAGTATGCGTGCGTCTCCACTCCCACATTC--------G------GGGCCAACAAACATGAAATTGAAATGGTGCAAAGAACAGCAGCTCAATGGACATGTAGAAGGTGGCATAACACTAGTCATGTTTGGGACATGTT-----------TTGCGATGATCAACCCTTGAGT-AAAGATGTACCAATACAAG-TTT-ACAC-TTTT-TACAAAATACATAATAGACTGGTTGACATTGACAGAGACTGAC-ACCTTATGACTAACAAAGCATCT-AGATACTCTAAAAGAATATCTCCCCT---ACAAC---A---TGATCAACTGAC-TGCCCCAACTG------------TCC-C-------TT----------TTTTCC-----------TCAAGAGTC-----------TA-C---CAC--TGTGGAATGCTCTTCCAGAATCTCCTTTCGCGATGGCTTCATTACATTCTG
gi|10 : TGAC-TGCCTTAACTG------------ACA----------T----------TTTTCC------------CAAGAGTC----------ATAGCAGGCAC--GGCGAAATGCGCTTTCAGAATCTTCTGTTGCCATGGCTTAAGTATATTC
gi|11 : caattaCATACAGGAGATGACATAACACTAGACGTGTTAGGGATATGTTTG--AC-A-A-TTT--ATGGT-------AAAGC-AAAGACATATCAATATAAG-CTTGTCAT-TTTTTTACAAAATATATAATGGATTGGTTGACGCTAACAGAGACCG---------TAACTATCAAAGCTGCT-AGATACTCTCAATGAATACCTCAACTACAACAAC---A---CGCTCGACTGAC-TGTAAAAAATG------------ACC-T-------TTAAATTTGTTATTTTCC-----------TCAAGAATC----------ATA-C---CAC--TGTGGAATG--CTTCCATAATCTAATGTTGTCATGACTACAGTAGAGTCTaatccttatttaatcaaacaaatgagagttggtttatgtacacaactctcacatcaaaattgtaattagtttaaatgctaaggtcagaagtcattttaacttttcattttacatttagacactgtatttaactaatacattatatgcaatttttgcctgtatatatgctatcacactgcagtgacagtattcgaataaagaaagtaactga
gi|12 : T----------TTTTTC-----------T-AAAAGTC----------ATA-C---CACGATGTG--ATGTTCTTACAGAATACACTGTTGACATGGCTGCAG
gi|13 : ctgcatttttgaagttttcaTCAACTTACATGT-TAAA--G------------TCCTC-------CT----------TTTTCC-----------TTA-GAATCTATATATAGAATA-A---CAC--TGTGGAATGCTTTTCCAGAACATACTGATGTCATGACTATAGTAGATTCTatgatttcattaagtaacagcttaagtggacatacgaaaatgcgagttatgtgtatacatcatacatgtaaatggtcagttgtatttttttttcattttactgtaatcacctatacagctcctgacagtatatatgccacaaccctgttgttatgatcagaatatatctgttacaatatagggagaaagaa
gi|14 : taccATTAAACTGCAGAACGACTTGTAGAA-CTTGGTTTA-ACGG-AGCAAACA-TGACTAATGAAGGTCAATGCATCCAAATGTCA--------AAACATGAAA-AT-AACAAAACA----AA-T-----A------GATTGCCGTTACACTCTACACTATGGACAGATGGTAAACGAGGTGAAAGCAACAACATACTTGGGGGTTACAATCATCGATACATTAGACTGGACACCttttcttcaaatcttaatttaagacaaaaacacatgaaagttgtttatgcatcaaaattgtaattagtctaaatgttaaggtcagcagtcatttaaacttttcattttaccttgagacactgttcagaacttttaatacgtatatacagtttctaactgcagta
gi|15 : gagttttAATACAAA-TTTTACGG-TTTTCTACAAAATGTAAACTGGACTGATTGACATTGGCATAGATTGTT-ATCTTGTGATTAA----------------------AAGAACACCTCACCT---ACATT---GTTGCGATCGACAGAC-TGTCTCAACTG------------ACC-TTTTAAAGTT----------TTTTCCCCAGAATCATGCCAAGAGTC----------ATG-C---CAC--TATGAAATGTTCTTCTA
gi|16 : CATAAAAAGACGGAAGTTAT-TTGATGGACTTTGGCAACGACTTCGACAAAGAACAGCGTAAGTG---AC--TACAAACTTGACCACTACGGTGTAAGAGGGGCTATCGCCAG-------------------T-------------------TCGATTGTATTCTGGTTATTCGGC-AGGACACA--AGCAGTATTACTCGTCGGACAAT--ACTCTGTCCG-AGCTCCAATTATATCcagtagt
gi|19 : agtttGAATGCTCTTCCAGAATCTACCGATGTCATTGGTACAGTt
gi|2 : acttactttctgtcaacaattaaagctgaaagaccAATAAGAAGCACAAACAGACAGATGTTATCTTGATGGACTTTGCCAAAGCCTTCCAAAAAGTACCCCAtgattattttaagtcaaatcttaattagacaaaaaaaatgagttgtatatgcacacatctctcatatcaaaagtttgt
gi|2 : TAACGACCTACCAAATG---GT---T------TATCATCAAAAGTAAGGCTTTTTGCAGATGACTGTC-TCGAGAAAAATGTATATTATTCT----TAAGGACTGCATTCAAC--CAGACTTACTTACAGAAACTTGGC--ACATGGTAGCAA-CAGTGGCTCATGAATTCCAATGTATCCAAATGTTACTCAGTGAGAACATCAACCAG-AA-AAAGCA----AA-T-----A------A----CC---ACACTTTACA---TGGACAGATGCTTGACAATGTAAAAGCAACAAAGTATGTCGGGATTACAATTACTGAAACATTGGACTGGGCGCCACACATTGCATACCAAACTTTAATTCGACCCCAAATTGACTA----TGCGTCTCCACTCCCACATTT--------G------GGGCCAACATACATAAAATTGAAATGGTGCAAAGAACAGCAGCTCAATGGACATGTAGAAGATGGTATAATATTATTCATTTTGGGGACATGCTTG--ACAA-A-TTGCGATGATCAACCCTAGAGT-AAAGATGTA-CAA---AAG-TTTGACAC-TTTT-TACAAAATATATAATAGACTGGTTGACATTGACAGAGACCGACAACCTAATGACTAACAAAGCATCT-AGATACTCTAAAAGAATATCTCACCT---ACAAC---A---TGATCAACTGAC-TACCTCAACTG------------T-C-C-------TT----------TTTTCC-----------TCAAGAGTC----------ATA-C---CGC--TGTGGAATGCTCTTCCAGAATTTACTTTTGCGATGGCTACAGTACATTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaacgacctaccaaatggtttatcatcaaaagtaaggctttttgcagatgactgtctcgagaaaaatgtatattattcttaaggactgcattcaaccagacttacttacagaaacttggcacatggtagcaacagtggctcatgaattccaatgtatccaaatgttactcagtgagaacatcaaccagaaaaagcaaataaccacactttacatggacagatgcttgacaatgtaaaagcaacaaagtatgtcgggattacaattactgaaacattggactgggcgccacacattgcataccaaactttaattcgaccccaaattgactatgcgtctccactcccacatttggggccaacatacataaaattgaaatggtgcaaagaacagcagctcaatggacatgtagaagatggtataatattattcattttggggacatgcttgacaaattgcgatgatcaaccctagagtaaagatgtacaaaagtttgacactttttacaaaatatataatagactggttgacattgacagagaccgacaacctaatgactaacaaagcatctagatactctaaaagaatatctcacctacaacatgatcaactgactacctcaactgtccttttttcctcaagagtcataccgctgtggaatgctcttccagaatttacttttgcgatggctacagtacattc
gi|21 : aataagaagcacaaacagacagatgttatcttgatggactttgccaaagccttccaaaaagtaccccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGTACAATATGAAGCACAAACAGACAGACATTATCTTGATGGACTTTGCCAAAGTCTTCCAAAAAGTACTCCACAAGCATCTACTATACAAACTAGACCACTACAGT-------------------G-------------------
gi|23 : taAACT-AC-TGCCTCAACTGACCTTTTGATTTTTC-C-------TT----------TTTTTT-----------TCAAAATTC----------AAA-C---CAT--TATCAAACGCTCTGACAGAATCTATTGTTGGAGTGGCTACcaaga
gi|26 : ATAACAGACTGGTTGACATTGCTAGAGAATGTT-GCCTTATCGCCAATAAAGC-TATAAGATACTCTTAA
gi|27 : ac-C---CAC--TGTGGAATGCTCTTC-------------TGCAATGGCTACAGTACATTCTG
gi|3 : AGTACAATAAGAAGCACAAACAGACAGACGTTATCTTGATGGACTTTGCCAA-----TCCAAAAAGTACCCCACAATTGTCTACTATACAAACTAGACCACTACAGT-------------------G----------------------------------------------CCTCATGGTTATCAGAC-----------------A--ACTCAACGG--AATGCACTCCGACCA-AGCTCCAGTAATATCTGATGGTTCACCAAGGTTCTTGCCTAGGTCCAATTCTCTTCCTATTGTTTATTAACGACCTACCGAATG---GT---T------TATCATCAAACATAAGGCTTTTTGCAGATGACT-----CTACAAAAATGTATATTATTCT----TTAGGACTGCATTGAAC--CAGACT----TACAGAAACTTGGC--ACATGGTAGCAA-GAGTGGCTCATGAATTCCAATGTATCTTAATGTTACTCAGTGAGAACATCAACCAA-AG-AAAGCA----AA-TTAATTACC----A----CT---ACACTTTACA---TTGACAGACGCTTGACAATGTAAAAGCAACAAAATATGTGGGGATTACAATTACTGAAACATTGGACTGGGCGCCACACATTGCATACCAAACTTTAATTCGACCCCAAATTGACTATG---G-GTCTCCACTCCCACATTT--------G------GAGCAAACACACATGAAATTGAAATGGTGCAAAGAACAGCAGCCTAATGGACATGTAGAAGATGGCATAATACTATTCATTTTGGGGACATGCTTA--AC-GGA-TTGCGATGATCAACCCTAGAGTTAAAGATGTAC-AA---AAG-TTTGACAC-TTTT-TACAAAATATATAATAGACTGGTTGACATTGACAGAGACCAAC-ACCTAATGACTAACAAAGCATCT-AGATACTCTAAAAGAATATCTCACCT---ACAAC---A---TGATCAACTGAC-TGCCTCAACTG------------T-C-C-------TT----------TTTTCC-----------TCAAGAGTC----------ATA-C---CGC--TGTGGATTGTTCTTCCAGAATCTACTTTTGCGATTGCTACAGTACATTCTtt
gi|4 : acaACAGTAAGAAGCACAAACA----GACAT-----------ACGTTATCGAAGT------------ATCCCACAAGCATCTACTATACAAACTAGACCACTACAGT-------------------G-------------------TATGAGGGACAACCAACTGTTGGATTGCCTCATGGTTATCAGACTGG---ACACAAGAAGTAGTACTTGACAG--AATGCACTCTGACCA-AGCTCCAGTAATATCCGG-GGTTCACCAAGGCTCCTGCCTACATCCAATTCTCTTCTTATTGTTCATTAACGACCTACTGAACA---GTATAT---------CATCAAATGTAAGGCTTTTTGCAGATGACT--C-TCTACAAAAATATATATT-CTCT----TTAGGACTGCATTGAAC--CAGACTAACTTACAGAAACTTGGT--ACATGGTAGAAA-CAGTGGCTCATGAATTTCAATGTTACCAAATGTTACTCAGTGAGAGCATCAACT---------GCA----A----------------------------------------GACA----CTTGACAAGGTGAAAGCAACAAAGTATGTGGAGGTTACAATTACTGAAAC-TTGGACTGGACGCCACACATTACATACCAAACTTTAATTTGACCCCAAATCAAGTATGCGT-CG---CCACTCCCACACTCGGGGCGAGG------GGGCCAACAAACATGATATTGAAATGGTGCAAAGA---------CGGTGGACATAT-----------TAA---------------GGACATGCTTG--AC-G-ATTTGCGACGATCAACCCTTGAGT-AAAGACATACCAATACAAGATTTGACACTTTTT-TACAAAATGCATATTAAACTGGTTGACAATGACAGAGACCTGC-ACCTAATGACTAACAACGCATCT-AGATACTCTCATAGAATATCTCGCCT---ACGTC---A---TGATCAACTGAC-TACCTCAACTG-------------CT-C-------CT----------TTTTCC-----------TCAGGAGTC----------GTA-C---CAC--TGTGGAATGCTCTTC-------------TGCGATGGCTACAGTACATTCTG
gi|5 : AGTACAATAAGAAGCACAAACAGACGGACATTATCTTGATGGACTTTGCCAAAGTCTTCCAAAAAGTACCCAACAAGCATCTACTATACAAATTAAACCACTACAGT-------------------GCGAGTGGGACAACCAACTGT-------------------TGGATTGCCTCATGGTTATCAGAC-------------AA--------CGAAAG--AATGCACTCTGACCA-AGCTCCAGTAATATCCGGTGGTTCACCAAGGCTCCTGCCTATGTCCAATTCTCTTCTTATTGTTCATTAACGACCTACCGAATG---GTATAT---------CATCAAACGTAAGGCATTTTGCAGATGACTGTC-TCTACAAAAATGTATATTATTCT----TTAGGACTGCATTGAAC--CAGACTTACTTACAGAAACTTGGC--ACATGGTAGCAA-CAGTGGCTCATGAATTCCAATGTATCCAAATGTTACTCAGTGAGAACATCAACCAGAAA-AAAGCA----AATT-----AACTACCA----CT---ACACTTTACA---TTGACAGACGCTTGACAATGTAAAAGCAACAAAATATGTGGGG------ATTACTGAAACATTGGACTGGGCGCCACACATTGCATACAAAACTTTAATTCGACCCCAAATTGAGTA----TGCGTCTCCACTCCCACATTT--------G------GGGCCAACATACATGAAATTGAAATGGTGCAAAGAACATCAGCTCAATGGACATGTAGAAGATGGCATAATATTATTCATTTTGGGGACATGCTTGAAAA-A-A-TCG-GATGATCAACCCTAGAGT-AAAGATGTA-CAA---AAG-TTTGACAC-TTTC-TACAAAATGTATAATAGACTGGTTGACATTGACAGAGACCGAC-
gi|6 : caTATCAGACTGG---ACACAAGAAGTAGTACTTGACAG--AATGCAGTCTG-CCACAGCTCCAGTAATATCTGG-GGTTCACCAAGGCTCCTGCCTACGTCCAGTTCTCTTCTTATTGTTCATTAACGACCTACTGAGTG---GTATAT---------CATCAAATGTAATGCTTTTTGCAGATGACT--C-TCTACAAAAATATATA--GCTCT----TCAGGACAGTAGTGAAC--CATACTAATTGACAGAAACTTTGT--ACATGGTAGAAA-CAGTGGCTCATGAATTTCAATGTATCCAAATGTTACTCGGTGAGAACATCAACT---------GCA----A----------------------------------------GACA----CTTGACAAGGTGAAAGCAACAAAGTATGTGGAGGTTACAATTACTGAAAC-TTAGACTAGATGCCACACATTACATACCAAACTTTAATTTGACCCCAAATCAAGTATGTGT-CG---CCACTCCCACACTC--------GTGGGTTGGGGCAACAAACTTGAAATGGAAATGGTGCAAAG-ACAGT-GATC-----ATATTTAG-----GACA----------CACTT----GACA-ATTTG---C-G-A-CT------ATCAACCCTTGAGT-AAAGACATACCAATGCAAG-ATTGACAC--TTT-TACAAAATGCATAATAAACTGGTTGACAATGACAGAGACCGAC-ACCTAATGACTAACAATGCATGT-AAATACTCTCAAAGAATATCTCACCT---ACAAC---A---TGATCAACTGAC-TGCCTCAACTG-------------CC-C-------TT----------TTTTCC-----------TCAGGA---------------------------GTGGAATGCTCTTCCAAATTCTACATTTGCAATGGCTACAGTACATTCTG
gi|7 : CAGCACAGTAAGAAGCACA----GACAGACGTTATCTTGATGGACTTTGCCATAGTCTTCAAAAAAGTACCCCACAAGTGTCTACTATACAAACTAGACTACTACAGT-------------------G-------------------TAAGAGGGACAACCAACCATTGGATTGCCTTCTGGTTATCACACATG---ACA--C-AAGTAGTACTTGATGG--AACGCACTCTGACCA-AGCTCCAGTAATATCGGGTGGTTCACCAAGGCTCTTGCCTATGTCCAATTCTCTTCTTATTGTTTATTAACGACCTACCAAATGTATATATATCATGTATATCATCAAATGTAAGGCTTATTGCAGATGACTGTC-T--ATAAAAATGTATATTATTCT----TCAGGATTGCATTGAAC--CAGACTAACTTACAGAAACTTGGT--ACATGGTAGCAA-CAGCAGCTCATGAATTCCAATGTATCCAAGTCTTACTCAGTGAGAATATCAACCAG-AA-AAAACAAATTAA-T-----A------A----CCACTACACTTTACA---GGGACAGACGCTTGACAATGTAAAAGCAACAAAGTATGTGGGGATTACAATTACTGAAACATTGGACTGGACGCCACATATTGCATACCAAACTTGAATTTGACCCCAAATTGAGTATGCGT-------TACTCCCACATTC--------G------GGGCCAACAAACATGAAATTGAAATGGtt
gi|8 : GACCCCAAATTGACTATACGT----CTCCACTCCCACATTT--------T------GGGCCAACATACATGAAATTGAAATGGTGCAAAGAACAGCAGCTCAATGGACATGTTGAAGATGGCATTATACTATTCATTTTGGGGACATGCTTG--AC-GAA-TTGCGATGATCAAATCGAGAGT-AAAGATGTA-CAA---AAG-TTTGACAC-TTTT-TACAAAATATATAATAGACTGGTTGGCATTGACAAAGACCGAC-ACCTAATGACTAGCAAAGCATCT-AGATACTCTAAAAGAATATCTCACCT---ACAACAATA---CAATCAACTGAC-TGCCTCAACTG------------TCC----------T----------TTTTCC-----------TCAAGAGTC----------ATG-C---CGC--TCTGGAACGCTCTTCCAGAATCTACTTTAGCGATGGCTACAGTACATTCTG
gi|9 : AAGAGGCACTAACAGACAGATGTTATCATTATGGACTTTG
gi|9 : GACCTATCGGACG---GTATAT---------CATTAAATGTAAGGCTTTTCGCAGATGGCTGTCACCTACAATAATATA-ATTATATTCACATCAGGACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacctatcggacggtatatcattaaatgtaaggcttttcgcagatggctgtcacctacaataatataattatattcacatcaggac
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GCTTACATCATAATTGTAATTAGTTTTAATACTAAGTTCAGTAGTAATTTGTATTTTACTCATTTTACTTTTAGACTCTGTACTCAGTTTTAATATATATACAGTTTCTGACTGCATATATGCCACCACTTTGTGGTAAAAATCAGAATGGATCATTTTTCGGAAGAAAGAAA
Unaligned ( gi|18 ): GTGTTGTATATGCACACAACTCTCACATCATAATTGTAATTAGTTTTAAAATAAAGGTCAATTTTCAGTTTCAATTTGTTCATTTTAATTTTAAACACTGTACGTTTCTGACTGCATATATACCAGCACCCTGTCGTGATAGTCAGTGTTGGAAGAAAGAAAT
Unaligned ( gi|20 ): TTGTAATTAGATTTAATGCAAGGTCAGCAGTAATTTTAACTTTTCGTCTTAACTTTTCACTTAACTTTTAAGACATAAATACAGTTTCTGACTACATATAAGCCACCACCTTGTTGTGATGATC
Unaligned ( gi|22 ): GCTTAACTTTAAACATATATACAGTTTTTTACTGTTATATGCCTCCACTACTCCATGACGATCAGAAATTATCGGTTACAGTTTAGGAAGAAAGAGAAAG
Unaligned ( gi|24 ): ATACAGTTTCTGACTGCATTTATGCTACCACTTTTGATGATCAGAATTAATTCATTGGTGACTATATGGAAGAGAGGGAAAAAGAAA
Unaligned ( gi|25 ): ATACAGTTTCTGACTACATATATGCTACCACTGTCTTGATGATCAGAATTCATTGGTGACTATATGGAAGAGAGAGAAAAAGA
Unaligned ( gi|28 ): TGATATCCTAACTTAATAAGATATGTAAAATGGAGTTGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111
lowQualScore : 88888888888888888888888888888888888888888888888888888888888 333333333333 444444444 1111 1111111 666666666666666666666666666666 11111 2222 222222222222222 1111111 1 111 1111111 444444444444444444444444444444444444 11111111111 1111111111
lowQualScore : 0 0 11111111111111111111111111111111111111111111111111111111111 1 444444444444 0 4 77 1 5 7 3 888 3 444444444 3 8 5 0000 66 5 66 5 3 0000000 111111111111111111111111111111 11111 2 0 4 3 2 666 3333 555555555555555 1 1 0 0 2 3 0 33 11 7777777 5 5 0 5 0 999 4 4 8 2 4 2 2 4 2 888 0000000 3 111111111111111111111111111111111111 55555555555 4444444444 3 555 44 3 3
lowQualScore : . . ........................................................... . ............ . . .. . . . . ... . ......... . . . .... .. . .. . . ....... .............................. ..... . . . . . ... .... ............... . . . . . . . .. .. ....... . . . . . ... . . . . . . . . . ... ....... . .................................... ........... .......... . ... .. . .
lowQualScore : 1 1 11111111111111111111111111111111111111111111111111111111111 0 666666666666 7 3 99 7 7 3 7 888 2 666666666 1 8 0 6666 99 5 99 0 1 8888888 111111111111111111111111111111 22222 5 2 2 2 0 000 0000 666666666666666 0 4 1 4 0 9 2 22 55 4444444 0 6 8 0 8 000 4 4 9 6 0 3 0 4 6 888 4444444 6 000000000000000000000000000000000000 88888888888 6666666666 1 444 22 5 3
consensus : CAGTACAATAAGAAGCACAAACAGACAGACGTTATCTTGATGGACTTTGCCAAAGTCTTCCAAAAAGTACCCCACAAGCGTCTACTATACAAACTAGACCACTACAGT-------------------G-------------------T-------------------TGGATTGCCTCNTGGTTATCAGACTGG--ACA--AGAAGTAGTACTCGACGG--AATGCACTCTGACCA-AGCTCCAGTAATATCCGGTGGTTCACCAAGGCTCCTGCCTACGTCCAATTCTCTTCTTATTGTTCATTAACGACCTACCGAACG---GTATAT------TATCATCAAACGTAAGGCTTTTTGCAGATGACTGTC-TCTACAAAAATGTATATTATTCT----TCAGGACTGCATTGAAC--CAGACTAACTTACAGAAACTTGGT--ACATGGTAGCAA-CAGTGGCTCATGAATTCCAATGTATCCAAATGTTACTCGGTGAGAACATCAACCAG-AA-AAAGCA----AA-T-----A------A----CC---ACACTTTACA---TGGACAGACGCTTGACAATGTAAAAGCAACAAAGTATGTGGGGGTTACAATTACTGAAACATTGGACTGGACGCCACACATTGCATACCAAACTTTAATTCGACCCCAAATCGAGTATGCGTGCGTCTCCACTCCCACATTC--------G------GGGCCAACANACATGAAATTGAAATGGTGCAAAGAACAGCAGCTCAATGGACATGTAGAAGATGGCATAATACTATTCATTTTGGGGACATGCTTG--AC-G-A-TTGCGATGATCAACCCTAGAGT-AAAGACGTACCAATACAAG-TTTGACAC-TTTT-TACAAAATGTATAATAGACTGGTTGACATTGACAGAGACCGAC-ACCTAATGACTAACAAAGCATCT-AGATACTCTNAAAGAATATCTCACCT---ACAAC---A---CGATCAACTGAC-TGCCTCAACTG------------TCC-C-------TT----------TTTTCC-----------TCAAGAGTC----------ATA-C---CAC--TGTGGAATGCTCTTCCAGAATCTACTGTTGCGATGGCTACAGTACATTCTG
Reference ( family-1014 ) : CAGTACAATAAGAAGCACAAACAGACAGACGTTATCTTGATGGACTTTGCCAAAGTCTTCCAAAAAGTACCCCACAAGCGTCTACTATACAAACTAGACCACTACAGT-------------------G-------------------T-------------------TGGATTGCCTCNTGGTTATCAGACTGG--ACA--AGAAGTAGTACTCGACGG--AATGCACTCTGACCA-AGCTCCAGTAATATCCGGTGGTTCACCAAGGCTCCTGCCTACGTCCAATTCTCTTCTTATTGTTCATTAACGACCTACCGAACG---GTATAT------TATCATCAAACGTAAGGCTTTTTGCAGATGACTGTC-TCTACAAAAATGTATATTATTCT----TCAGGACTGCATTGAAC--CAGACTAACTTACAGAAACTTGGT--ACATGGTAGCAA-CAGTGGCTCATGAATTCCAATGTATCCAAATGTTACTCGGTGAGAACATCAACCAG-AA-AAAGCA----AA-T-----A------A----CC---ACACTTTACA---TGGACAGACGCTTGACAATGTAAAAGCAACAAAGTATGTGGGGGTTACAATTACTGAAACATTGGACTGGACGCCACACATTGCATACCAAACTTTAATTCGACCCCAAATCGAGTATGCGTGCGTCTCCACTCCCACATTC--------G------GGGCCAACANACATGAAATTGAAATGGTGCAAAGAACAGCAGCTCAATGGACATGTAGAAGATGGCATAATACTATTCATTTTGGGGACATGCTTG--AC-G-A-TTGCGATGATCAACCCTAGAGT-AAAGACGTACCAATACAAG-TTTGACAC-TTTT-TACAAAATGTATAATAGACTGGTTGACATTGACAGAGACCGAC-ACCTAATGACTAACAAAGCATCT-AGATACTCTNAAAGAATATCTCACCT---ACAAC---A---CGATCAACTGAC-TGCCTCAACTG------------TCC-C-------TT----------TTTTCC-----------TCAAGAGTC----------ATA-C---CAC--TGTGGAATGCTCTTCCAGAATCTACTGTTGCGATGGCTACAGTACATTCTG
gi|1 : CAGTACAATAAGGAGCAAAAACAGACAGACGTTACCTTGATGGACTTTGCCAAAGTCTTCCAAACAGTACCCCACAAGCATCTACTATACAATCTAGACCACTAC--T-------------------G-------------------T-------------------TGTATTGCCTTCTGGTTATCAGACTAG--ACA--AGAAGTTGTACCCGACGA--AATGCACTCAGACTA-AGCTCCAGTAATATCCGGTGGTTCACCAAGGCTCTTGCCTAGGTCCAATTCTCTTCCTATTGTTTATTAACGACCTACCAAACG---GTATACATG---TATCATCGAATGTAAGGCTTTTTGCAGATGACTGTC-TCTACAAAAATGTATATTATTCT----TCAGGACGGCATTGAAC--CAGACTAACTTACAGAAACTTGGT--ACATGGTAGCAA-CAGTGGTTCGTGAATTCCAATGTATCCAAATGTTACTCGGTGAGAACATCAACCAG-AA-AAAGCA----AA-T-----A------A----CC---ATACTTTACA---TGGACAGACGCTTGACAATGTAAAAGTAACAAAGTATGTGGGTATTACAATTACTGAAACATTGGACTGGACGCCACACATTGCATACCAAACTTTAATTCAACCCTAAATTGAGTATGCGTGCGTCTCCACTCCCACATTC--------G------GGGCCAACAAACATGAAATTGAAATGGTGCAAAGAACAGCAGCTCAATGGACATGTAGAAGGTGGCATAACACTAGTCATGTTTGGGACATGTT-----------TTGCGATGATCAACCCTTGAGT-AAAGATGTACCAATACAAG-TTT-ACAC-TTTT-TACAAAATACATAATAGACTGGTTGACATTGACAGAGACTGAC-ACCTTATGACTAACAAAGCATCT-AGATACTCTAAAAGAATATCTCCCCT---ACAAC---A---TGATCAACTGAC-TGCCCCAACTG------------TCC-C-------TT----------TTTTCC-----------TCAAGAGTC-----------TA-C---CAC--TGTGGAATGCTCTTCCAGAATCTCCTTTCGCGATGGCTTCATTACATTCTG
gi|10 : TGAC-TGCCTTAACTG------------ACA----------T----------TTTTCC------------CAAGAGTC----------ATAGCAGGCAC--GGCGAAATGCGCTTTCAGAATCTTCTGTTGCCATGGCTTAAGTATATTC
gi|11 : caattaCATACAGGAGATGACATAACACTAGACGTGTTAGGGATATGTTTG--AC-A-A-TTT--ATGGT-------AAAGC-AAAGACATATCAATATAAG-CTTGTCAT-TTTTTTACAAAATATATAATGGATTGGTTGACGCTAACAGAGACCG---------TAACTATCAAAGCTGCT-AGATACTCTCAATGAATACCTCAACTACAACAAC---A---CGCTCGACTGAC-TGTAAAAAATG------------ACC-T-------TTAAATTTGTTATTTTCC-----------TCAAGAATC----------ATA-C---CAC--TGTGGAATG--CTTCCATAATCTAATGTTGTCATGACTACAGTAGAGTCTaatccttatttaatcaaacaaatgagagttggtttatgtacacaactctcacatcaaaattgtaattagtttaaatgctaaggtcagaagtcattttaacttttcattttacatttagacactgtatttaactaatacattatatgcaatttttgcctgtatatatgctatcacactgcagtgacagtattcgaataaagaaagtaactga
gi|12 : T----------TTTTTC-----------T-AAAAGTC----------ATA-C---CACGATGTG--ATGTTCTTACAGAATACACTGTTGACATGGCTGCAG
gi|13 : ctgcatttttgaagttttcaTCAACTTACATGT-TAAA--G------------TCCTC-------CT----------TTTTCC-----------TTA-GAATCTATATATAGAATA-A---CAC--TGTGGAATGCTTTTCCAGAACATACTGATGTCATGACTATAGTAGATTCTatgatttcattaagtaacagcttaagtggacatacgaaaatgcgagttatgtgtatacatcatacatgtaaatggtcagttgtatttttttttcattttactgtaatcacctatacagctcctgacagtatatatgccacaaccctgttgttatgatcagaatatatctgttacaatatagggagaaagaa
gi|14 : taccATTAAACTGCAGAACGACTTGTAGAA-CTTGGTTTA-ACGG-AGCAAACA-TGACTAATGAAGGTCAATGCATCCAAATGTCA--------AAACATGAAA-AT-AACAAAACA----AA-T-----A------GATTGCCGTTACACTCTACACTATGGACAGATGGTAAACGAGGTGAAAGCAACAACATACTTGGGGGTTACAATCATCGATACATTAGACTGGACACCttttcttcaaatcttaatttaagacaaaaacacatgaaagttgtttatgcatcaaaattgtaattagtctaaatgttaaggtcagcagtcatttaaacttttcattttaccttgagacactgttcagaacttttaatacgtatatacagtttctaactgcagta
gi|15 : gagttttAATACAAA-TTTTACGG-TTTTCTACAAAATGTAAACTGGACTGATTGACATTGGCATAGATTGTT-ATCTTGTGATTAA----------------------AAGAACACCTCACCT---ACATT---GTTGCGATCGACAGAC-TGTCTCAACTG------------ACC-TTTTAAAGTT----------TTTTCCCCAGAATCATGCCAAGAGTC----------ATG-C---CAC--TATGAAATGTTCTTCTA
gi|16 : CATAAAAAGACGGAAGTTAT-TTGATGGACTTTGGCAACGACTTCGACAAAGAACAGCGTAAGTG---AC--TACAAACTTGACCACTACGGTGTAAGAGGGGCTATCGCCAG-------------------T-------------------TCGATTGTATTCTGGTTATTCGGCAGGACACA--AGCAGTATTACTCGTCGGACAAT--ACTCTGTCCG-AGCTCCAATTATATCcagtagt
gi|19 : agtttGAATGCTCTTCCAGAATCTACCGATGTCATTGGTACAGTt
gi|2 : acttactttctgtcaacaattaaagctgaaagaccAATAAGAAGCACAAACAGACAGATGTTATCTTGATGGACTTTGCCAAAGCCTTCCAAAAAGTACCCCAtgattattttaagtcaaatcttaattagacaaaaaaaatgagttgtatatgcacacatctctcatatcaaaagtttgt
gi|2 : TAACGACCTACCAAATG---GT---T------TATCATCAAAAGTAAGGCTTTTTGCAGATGACTGTC-TCGAGAAAAATGTATATTATTCT----TAAGGACTGCATTCAAC--CAGACTTACTTACAGAAACTTGGC--ACATGGTAGCAA-CAGTGGCTCATGAATTCCAATGTATCCAAATGTTACTCAGTGAGAACATCAACCAG-AA-AAAGCA----AA-T-----A------A----CC---ACACTTTACA---TGGACAGATGCTTGACAATGTAAAAGCAACAAAGTATGTCGGGATTACAATTACTGAAACATTGGACTGGGCGCCACACATTGCATACCAAACTTTAATTCGACCCCAAATTGACTA----TGCGTCTCCACTCCCACATTT--------G------GGGCCAACATACATAAAATTGAAATGGTGCAAAGAACAGCAGCTCAATGGACATGTAGAAGATGGTATAATATTATTCATTTTGGGGACATGCTTG--ACAA-A-TTGCGATGATCAACCCTAGAGT-AAAGATGTA-CAA---AAG-TTTGACAC-TTTT-TACAAAATATATAATAGACTGGTTGACATTGACAGAGACCGACAACCTAATGACTAACAAAGCATCT-AGATACTCTAAAAGAATATCTCACCT---ACAAC---A---TGATCAACTGAC-TACCTCAACTG------------T-C-C-------TT----------TTTTCC-----------TCAAGAGTC----------ATA-C---CGC--TGTGGAATGCTCTTCCAGAATTTACTTTTGCGATGGCTACAGTACATTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaacgacctaccaaatggtttatcatcaaaagtaaggctttttgcagatgactgtctcgagaaaaatgtatattattcttaaggactgcattcaaccagacttacttacagaaacttggcacatggtagcaacagtggctcatgaattccaatgtatccaaatgttactcagtgagaacatcaaccagaaaaagcaaataaccacactttacatggacagatgcttgacaatgtaaaagcaacaaagtatgtcgggattacaattactgaaacattggactgggcgccacacattgcataccaaactttaattcgaccccaaattgactatgcgtctccactcccacatttggggccaacatacataaaattgaaatggtgcaaagaacagcagctcaatggacatgtagaagatggtataatattattcattttggggacatgcttgacaaattgcgatgatcaaccctagagtaaagatgtacaaaagtttgacactttttacaaaatatataatagactggttgacattgacagagaccgacaacctaatgactaacaaagcatctagatactctaaaagaatatctcacctacaacatgatcaactgactacctcaactgtccttttttcctcaagagtcataccgctgtggaatgctcttccagaatttacttttgcgatggctacagtacattc
gi|21 : aataagaagcacaaacagacagatgttatcttgatggactttgccaaagccttccaaaaagtaccccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGTACAATATGAAGCACAAACAGACAGACATTATCTTGATGGACTTTGCCAAAGTCTTCCAAAAAGTACTCCACAAGCATCTACTATACAAACTAGACCACTACAGT-------------------G-------------------
gi|23 : taAACT-AC-TGCCTCAACTGACCTTTTGATTTTTC-C-------TT----------TTTTTT-----------TCAAAATTC----------AAA-C---CAT--TATCAAACGCTCTGACAGAATCTATTGTTGGAGTGGCTACcaaga
gi|26 : ATAACAGACTGGTTGACATTGCTAGAGAATGTT-GCCTTATCGCCAATAAAGC-TATAAGATACTCTTAA
gi|27 : ac-C---CAC--TGTGGAATGCTCTTC-------------TGCAATGGCTACAGTACATTCTG
gi|3 : AGTACAATAAGAAGCACAAACAGACAGACGTTATCTTGATGGACTTTGCCAA-----TCCAAAAAGTACCCCACAATTGTCTACTATACAAACTAGACCACTACAGT-------------------G----------------------------------------------CCTCATGGTTATCAGAC----------------A--ACTCAACGG--AATGCACTCCGACCA-AGCTCCAGTAATATCTGATGGTTCACCAAGGTTCTTGCCTAGGTCCAATTCTCTTCCTATTGTTTATTAACGACCTACCGAATG---GT---T------TATCATCAAACATAAGGCTTTTTGCAGATGACT-----CTACAAAAATGTATATTATTCT----TTAGGACTGCATTGAAC--CAGACT----TACAGAAACTTGGC--ACATGGTAGCAA-GAGTGGCTCATGAATTCCAATGTATCTTAATGTTACTCAGTGAGAACATCAACCAA-AG-AAAGCA----AA-TTAATTACC----A----CT---ACACTTTACA---TTGACAGACGCTTGACAATGTAAAAGCAACAAAATATGTGGGGATTACAATTACTGAAACATTGGACTGGGCGCCACACATTGCATACCAAACTTTAATTCGACCCCAAATTGACTATG---G-GTCTCCACTCCCACATTT--------G------GAGCAAACACACATGAAATTGAAATGGTGCAAAGAACAGCAGCCTAATGGACATGTAGAAGATGGCATAATACTATTCATTTTGGGGACATGCTTA--AC-GGA-TTGCGATGATCAACCCTAGAGTTAAAGATGTAC-AA---AAG-TTTGACAC-TTTT-TACAAAATATATAATAGACTGGTTGACATTGACAGAGACCAAC-ACCTAATGACTAACAAAGCATCT-AGATACTCTAAAAGAATATCTCACCT---ACAAC---A---TGATCAACTGAC-TGCCTCAACTG------------T-C-C-------TT----------TTTTCC-----------TCAAGAGTC----------ATA-C---CGC--TGTGGATTGTTCTTCCAGAATCTACTTTTGCGATTGCTACAGTACATTCTtt
gi|4 : acaACAGTAAGAAGCACAAACA----GACAT-----------ACGTTATCGAAGT------------ATCCCACAAGCATCTACTATACAAACTAGACCACTACAGT-------------------G-------------------TATGAGGGACAACCAACTGTTGGATTGCCTCATGGTTATCAGACTGG--ACACAAGAAGTAGTACTTGACAG--AATGCACTCTGACCA-AGCTCCAGTAATATCCGG-GGTTCACCAAGGCTCCTGCCTACATCCAATTCTCTTCTTATTGTTCATTAACGACCTACTGAACA---GTATAT---------CATCAAATGTAAGGCTTTTTGCAGATGACT--C-TCTACAAAAATATATATT-CTCT----TTAGGACTGCATTGAAC--CAGACTAACTTACAGAAACTTGGT--ACATGGTAGAAA-CAGTGGCTCATGAATTTCAATGTTACCAAATGTTACTCAGTGAGAGCATCAACT---------GCA----A----------------------------------------GACA----CTTGACAAGGTGAAAGCAACAAAGTATGTGGAGGTTACAATTACTGAAAC-TTGGACTGGACGCCACACATTACATACCAAACTTTAATTTGACCCCAAATCAAGTATGCGT-CG---CCACTCCCACACTCGGGGCGAGG------GGGCCAACAAACATGATATTGAAATGGTGCAAAGA---------CGGTGGACATAT-----------TAA---------------GGACATGCTTG--AC-G-ATTTGCGACGATCAACCCTTGAGT-AAAGACATACCAATACAAGATTTGACACTTTTT-TACAAAATGCATATTAAACTGGTTGACAATGACAGAGACCTGC-ACCTAATGACTAACAACGCATCT-AGATACTCTCATAGAATATCTCGCCT---ACGTC---A---TGATCAACTGAC-TACCTCAACTG-------------CT-C-------CT----------TTTTCC-----------TCAGGAGTC----------GTA-C---CAC--TGTGGAATGCTCTTC-------------TGCGATGGCTACAGTACATTCTG
gi|5 : AGTACAATAAGAAGCACAAACAGACGGACATTATCTTGATGGACTTTGCCAAAGTCTTCCAAAAAGTACCCAACAAGCATCTACTATACAAATTAAACCACTACAGT-------------------GCGAGTGGGACAACCAACTGT-------------------TGGATTGCCTCATGGTTATCAGAC------------AA--------CGAAAG--AATGCACTCTGACCA-AGCTCCAGTAATATCCGGTGGTTCACCAAGGCTCCTGCCTATGTCCAATTCTCTTCTTATTGTTCATTAACGACCTACCGAATG---GTATAT---------CATCAAACGTAAGGCATTTTGCAGATGACTGTC-TCTACAAAAATGTATATTATTCT----TTAGGACTGCATTGAAC--CAGACTTACTTACAGAAACTTGGC--ACATGGTAGCAA-CAGTGGCTCATGAATTCCAATGTATCCAAATGTTACTCAGTGAGAACATCAACCAGAAA-AAAGCA----AATT-----AACTACCA----CT---ACACTTTACA---TTGACAGACGCTTGACAATGTAAAAGCAACAAAATATGTGGGG------ATTACTGAAACATTGGACTGGGCGCCACACATTGCATACAAAACTTTAATTCGACCCCAAATTGAGTA----TGCGTCTCCACTCCCACATTT--------G------GGGCCAACATACATGAAATTGAAATGGTGCAAAGAACATCAGCTCAATGGACATGTAGAAGATGGCATAATATTATTCATTTTGGGGACATGCTTGAAAA-A-A-TCG-GATGATCAACCCTAGAGT-AAAGATGTA-CAA---AAG-TTTGACAC-TTTC-TACAAAATGTATAATAGACTGGTTGACATTGACAGAGACCGAC-
gi|6 : caTATCAGACTGG--ACACAAGAAGTAGTACTTGACAG--AATGCAGTCTG-CCACAGCTCCAGTAATATCTGG-GGTTCACCAAGGCTCCTGCCTACGTCCAGTTCTCTTCTTATTGTTCATTAACGACCTACTGAGTG---GTATAT---------CATCAAATGTAATGCTTTTTGCAGATGACT--C-TCTACAAAAATATATA--GCTCT----TCAGGACAGTAGTGAAC--CATACTAATTGACAGAAACTTTGT--ACATGGTAGAAA-CAGTGGCTCATGAATTTCAATGTATCCAAATGTTACTCGGTGAGAACATCAACT---------GCA----A----------------------------------------GACA----CTTGACAAGGTGAAAGCAACAAAGTATGTGGAGGTTACAATTACTGAAAC-TTAGACTAGATGCCACACATTACATACCAAACTTTAATTTGACCCCAAATCAAGTATGTGT-CG---CCACTCCCACACTC--------GTGGGTTGGGGCAACAAACTTGAAATGGAAATGGTGCAAAG-ACAGT-GATC-----ATATTTAG-----GACA----------CACTT----GACA-ATTTG---C-G-A-CT------ATCAACCCTTGAGT-AAAGACATACCAATGCAAG-ATTGACAC--TTT-TACAAAATGCATAATAAACTGGTTGACAATGACAGAGACCGAC-ACCTAATGACTAACAATGCATGT-AAATACTCTCAAAGAATATCTCACCT---ACAAC---A---TGATCAACTGAC-TGCCTCAACTG-------------CC-C-------TT----------TTTTCC-----------TCAGGA---------------------------GTGGAATGCTCTTCCAAATTCTACATTTGCAATGGCTACAGTACATTCTG
gi|7 : CAGCACAGTAAGAAGCACA----GACAGACGTTATCTTGATGGACTTTGCCATAGTCTTCAAAAAAGTACCCCACAAGTGTCTACTATACAAACTAGACTACTACAGT-------------------G-------------------TAAGAGGGACAACCAACCATTGGATTGCCTTCTGGTTATCACACATG--ACA--C-AAGTAGTACTTGATGG--AACGCACTCTGACCA-AGCTCCAGTAATATCGGGTGGTTCACCAAGGCTCTTGCCTATGTCCAATTCTCTTCTTATTGTTTATTAACGACCTACCAAATGTATATATATCATGTATATCATCAAATGTAAGGCTTATTGCAGATGACTGTC-T--ATAAAAATGTATATTATTCT----TCAGGATTGCATTGAAC--CAGACTAACTTACAGAAACTTGGT--ACATGGTAGCAA-CAGCAGCTCATGAATTCCAATGTATCCAAGTCTTACTCAGTGAGAATATCAACCAG-AA-AAAACAAATTAA-T-----A------A----CCACTACACTTTACA---GGGACAGACGCTTGACAATGTAAAAGCAACAAAGTATGTGGGGATTACAATTACTGAAACATTGGACTGGACGCCACATATTGCATACCAAACTTGAATTTGACCCCAAATTGAGTATGCGT-------TACTCCCACATTC--------G------GGGCCAACAAACATGAAATTGAAATGGtt
gi|8 : GACCCCAAATTGACTATACGT----CTCCACTCCCACATTT--------T------GGGCCAACATACATGAAATTGAAATGGTGCAAAGAACAGCAGCTCAATGGACATGTTGAAGATGGCATTATACTATTCATTTTGGGGACATGCTTG--AC-GAA-TTGCGATGATCAAATCGAGAGT-AAAGATGTA-CAA---AAG-TTTGACAC-TTTT-TACAAAATATATAATAGACTGGTTGGCATTGACAAAGACCGAC-ACCTAATGACTAGCAAAGCATCT-AGATACTCTAAAAGAATATCTCACCT---ACAACAATA---CAATCAACTGAC-TGCCTCAACTG------------TCC----------T----------TTTTCC-----------TCAAGAGTC----------ATG-C---CGC--TCTGGAACGCTCTTCCAGAATCTACTTTAGCGATGGCTACAGTACATTCTG
gi|9 : AAGAGGCACTAACAGACAGATGTTATCATTATGGACTTTG
gi|9 : GACCTATCGGACG---GTATAT---------CATTAAATGTAAGGCTTTTCGCAGATGGCTGTCACCTACAATAATATA-ATTATATTCACATCAGGACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacctatcggacggtatatcattaaatgtaaggcttttcgcagatggctgtcacctacaataatataattatattcacatcaggac
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GCTTACATCATAATTGTAATTAGTTTTAATACTAAGTTCAGTAGTAATTTGTATTTTACTCATTTTACTTTTAGACTCTGTACTCAGTTTTAATATATATACAGTTTCTGACTGCATATATGCCACCACTTTGTGGTAAAAATCAGAATGGATCATTTTTCGGAAGAAAGAAA
Unaligned ( gi|18 ): GTGTTGTATATGCACACAACTCTCACATCATAATTGTAATTAGTTTTAAAATAAAGGTCAATTTTCAGTTTCAATTTGTTCATTTTAATTTTAAACACTGTACGTTTCTGACTGCATATATACCAGCACCCTGTCGTGATAGTCAGTGTTGGAAGAAAGAAAT
Unaligned ( gi|20 ): TTGTAATTAGATTTAATGCAAGGTCAGCAGTAATTTTAACTTTTCGTCTTAACTTTTCACTTAACTTTTAAGACATAAATACAGTTTCTGACTACATATAAGCCACCACCTTGTTGTGATGATC
Unaligned ( gi|22 ): GCTTAACTTTAAACATATATACAGTTTTTTACTGTTATATGCCTCCACTACTCCATGACGATCAGAAATTATCGGTTACAGTTTAGGAAGAAAGAGAAAG
Unaligned ( gi|24 ): ATACAGTTTCTGACTGCATTTATGCTACCACTTTTGATGATCAGAATTAATTCATTGGTGACTATATGGAAGAGAGGGAAAAAGAAA
Unaligned ( gi|25 ): ATACAGTTTCTGACTACATATATGCTACCACTGTCTTGATGATCAGAATTCATTGGTGACTATATGGAAGAGAGAGAAAAAGA
Unaligned ( gi|28 ): TGATATCCTAACTTAATAAGATATGTAAAATGGAGTTGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111
lowQualScore : 88888888888888888888888888888888888888888888888888888888888 333333333333 444444444 1111 1111111 666666666666666666666666666666 11111 2222 222222222222222 1111111 1 111 1111111 444444444444444444444444444444444444 11111111111 1111111111
lowQualScore : 0 0 11111111111111111111111111111111111111111111111111111111111 1 444444444444 0 4 77 1 5 7 3 888 3 444444444 3 8 5 0000 66 5 66 5 3 0000000 111111111111111111111111111111 11111 2 0 4 3 2 666 3333 555555555555555 1 1 0 0 2 3 0 33 11 7777777 5 5 0 5 0 999 4 4 8 2 4 2 2 4 2 888 0000000 3 111111111111111111111111111111111111 55555555555 4444444444 3 555 44 3 3
lowQualScore : . . ........................................................... . ............ . . .. . . . . ... . ......... . . . .... .. . .. . . ....... .............................. ..... . . . . . ... .... ............... . . . . . . . .. .. ....... . . . . . ... . . . . . . . . . ... ....... . .................................... ........... .......... . ... .. . .
lowQualScore : 1 1 11111111111111111111111111111111111111111111111111111111111 0 666666666666 7 3 99 7 7 3 7 888 2 666666666 1 8 0 6666 99 5 99 0 1 8888888 111111111111111111111111111111 22222 5 2 2 2 0 000 0000 666666666666666 0 4 1 4 0 9 2 22 55 4444444 0 6 8 0 8 000 4 4 9 6 0 3 0 4 6 888 4444444 6 000000000000000000000000000000000000 88888888888 6666666666 1 444 22 5 3
consensus : CAGTACAATAAGAAGCACAAACAGACAGACGTTATCTTGATGGACTTTGCCAAAGTCTTCCAAAAAGTACCCCACAAGCGTCTACTATACAAACTAGACCACTACAGT-------------------G-------------------T-------------------TGGATTGCCTCNTGGTTATCAGACTGG--ACA--AGAAGTAGTACTCGACGG--AATGCACTCTGACCA-AGCTCCAGTAATATCCGGTGGTTCACCAAGGCTCCTGCCTACGTCCAATTCTCTTCTTATTGTTCATTAACGACCTACCGAACG---GTATAT------TATCATCAAACGTAAGGCTTTTTGCAGATGACTGTC-TCTACAAAAATGTATATTATTCT----TCAGGACTGCATTGAAC--CAGACTAACTTACAGAAACTTGGT--ACATGGTAGCAA-CAGTGGCTCATGAATTCCAATGTATCCAAATGTTACTCGGTGAGAACATCAACCAG-AA-AAAGCA----AA-T-----A------A----CC---ACACTTTACA---TGGACAGACGCTTGACAATGTAAAAGCAACAAAGTATGTGGGGGTTACAATTACTGAAACATTGGACTGGACGCCACACATTGCATACCAAACTTTAATTCGACCCCAAATCGAGTATGCGTGCGTCTCCACTCCCACATTC--------G------GGGCCAACANACATGAAATTGAAATGGTGCAAAGAACAGCAGCTCAATGGACATGTAGAAGATGGCATAATACTATTCATTTTGGGGACATGCTTG--AC-G-A-TTGCGATGATCAACCCTAGAGT-AAAGACGTACCAATACAAG-TTTGACAC-TTTT-TACAAAATGTATAATAGACTGGTTGACATTGACAGAGACCGAC-ACCTAATGACTAACAAAGCATCT-AGATACTCTNAAAGAATATCTCACCT---ACAAC---A---CGATCAACTGAC-TGCCTCAACTG------------TCC-C-------TT----------TTTTCC-----------TCAAGAGTC----------ATA-C---CAC--TGTGGAATGCTCTTCCAGAATCTACTGTTGCGATGGCTACAGTACATTCTG
Reference ( family-1014 ) : CAGTACAATAAGAAGCACAAACAGACAGACGTTATCTTGATGGACTTTGCCAAAGTCTTCCAAAAAGTACCCCACAAGCGTCTACTATACAAACTAGACCACTACAGT-------------------G-------------------T-------------------TGGATTGCCTCNTGGTTATCAGACTGG--ACA--AGAAGTAGTACTCGACGG--AATGCACTCTGACCA-AGCTCCAGTAATATCCGGTGGTTCACCAAGGCTCCTGCCTACGTCCAATTCTCTTCTTATTGTTCATTAACGACCTACCGAACG---GTATAT------TATCATCAAACGTAAGGCTTTTTGCAGATGACTGTC-TCTACAAAAATGTATATTATTCT----TCAGGACTGCATTGAAC--CAGACTAACTTACAGAAACTTGGT--ACATGGTAGCAA-CAGTGGCTCATGAATTCCAATGTATCCAAATGTTACTCGGTGAGAACATCAACCAG-AA-AAAGCA----AA-T-----A------A----CC---ACACTTTACA---TGGACAGACGCTTGACAATGTAAAAGCAACAAAGTATGTGGGGGTTACAATTACTGAAACATTGGACTGGACGCCACACATTGCATACCAAACTTTAATTCGACCCCAAATCGAGTATGCGTGCGTCTCCACTCCCACATTC--------G------GGGCCAACANACATGAAATTGAAATGGTGCAAAGAACAGCAGCTCAATGGACATGTAGAAGATGGCATAATACTATTCATTTTGGGGACATGCTTG--AC-G-A-TTGCGATGATCAACCCTAGAGT-AAAGACGTACCAATACAAG-TTTGACAC-TTTT-TACAAAATGTATAATAGACTGGTTGACATTGACAGAGACCGAC-ACCTAATGACTAACAAAGCATCT-AGATACTCTNAAAGAATATCTCACCT---ACAAC---A---CGATCAACTGAC-TGCCTCAACTG------------TCC-C-------TT----------TTTTCC-----------TCAAGAGTC----------ATA-C---CAC--TGTGGAATGCTCTTCCAGAATCTACTGTTGCGATGGCTACAGTACATTCTG
gi|1 : CAGTACAATAAGGAGCAAAAACAGACAGACGTTACCTTGATGGACTTTGCCAAAGTCTTCCAAACAGTACCCCACAAGCATCTACTATACAATCTAGACCACTAC--T-------------------G-------------------T-------------------TGTATTGCCTTCTGGTTATCAGACTAG--ACA--AGAAGTTGTACCCGACGA--AATGCACTCAGACTA-AGCTCCAGTAATATCCGGTGGTTCACCAAGGCTCTTGCCTAGGTCCAATTCTCTTCCTATTGTTTATTAACGACCTACCAAACG---GTATACATG---TATCATCGAATGTAAGGCTTTTTGCAGATGACTGTC-TCTACAAAAATGTATATTATTCT----TCAGGACGGCATTGAAC--CAGACTAACTTACAGAAACTTGGT--ACATGGTAGCAA-CAGTGGTTCGTGAATTCCAATGTATCCAAATGTTACTCGGTGAGAACATCAACCAG-AA-AAAGCA----AA-T-----A------A----CC---ATACTTTACA---TGGACAGACGCTTGACAATGTAAAAGTAACAAAGTATGTGGGTATTACAATTACTGAAACATTGGACTGGACGCCACACATTGCATACCAAACTTTAATTCAACCCTAAATTGAGTATGCGTGCGTCTCCACTCCCACATTC--------G------GGGCCAACAAACATGAAATTGAAATGGTGCAAAGAACAGCAGCTCAATGGACATGTAGAAGGTGGCATAACACTAGTCATGTTTGGGACATGTT-----------TTGCGATGATCAACCCTTGAGT-AAAGATGTACCAATACAAG-TTT-ACAC-TTTT-TACAAAATACATAATAGACTGGTTGACATTGACAGAGACTGAC-ACCTTATGACTAACAAAGCATCT-AGATACTCTAAAAGAATATCTCCCCT---ACAAC---A---TGATCAACTGAC-TGCCCCAACTG------------TCC-C-------TT----------TTTTCC-----------TCAAGAGTC-----------TA-C---CAC--TGTGGAATGCTCTTCCAGAATCTCCTTTCGCGATGGCTTCATTACATTCTG
gi|10 : TGAC-TGCCTTAACTG------------ACA----------T----------TTTTCC------------CAAGAGTC----------ATAGCAGGCAC--GGCGAAATGCGCTTTCAGAATCTTCTGTTGCCATGGCTTAAGTATATTC
gi|11 : caattaCATACAGGAGATGACATAACACTAGACGTGTTAGGGATATGTTTG--AC-A-A-TTT--ATGGT-------AAAGC-AAAGACATATCAATATAAG-CTTGTCAT-TTTTTTACAAAATATATAATGGATTGGTTGACGCTAACAGAGACCG---------TAACTATCAAAGCTGCT-AGATACTCTCAATGAATACCTCAACTACAACAAC---A---CGCTCGACTGAC-TGTAAAAAATG------------ACC-T-------TTAAATTTGTTATTTTCC-----------TCAAGAATC----------ATA-C---CAC--TGTGGAATG--CTTCCATAATCTAATGTTGTCATGACTACAGTAGAGTCTaatccttatttaatcaaacaaatgagagttggtttatgtacacaactctcacatcaaaattgtaattagtttaaatgctaaggtcagaagtcattttaacttttcattttacatttagacactgtatttaactaatacattatatgcaatttttgcctgtatatatgctatcacactgcagtgacagtattcgaataaagaaagtaactga
gi|12 : T----------TTTTTC-----------T-AAAAGTC----------ATA-C---CACGATGTG--ATGTTCTTACAGAATACACTGTTGACATGGCTGCAG
gi|13 : ctgcatttttgaagttttcaTCAACTTACATGT-TAAA--G------------TCCTC-------CT----------TTTTCC-----------TTA-GAATCTATATATAGAATA-A---CAC--TGTGGAATGCTTTTCCAGAACATACTGATGTCATGACTATAGTAGATTCTatgatttcattaagtaacagcttaagtggacatacgaaaatgcgagttatgtgtatacatcatacatgtaaatggtcagttgtatttttttttcattttactgtaatcacctatacagctcctgacagtatatatgccacaaccctgttgttatgatcagaatatatctgttacaatatagggagaaagaa
gi|14 : taccATTAAACTGCAGAACGACTTGTAGAA-CTTGGTTTA-ACGG-AGCAAACA-TGACTAATGAAGGTCAATGCATCCAAATGTCA--------AAACATGAAA-AT-AACAAAACA----AA-T-----A------GATTGCCGTTACACTCTACACTATGGACAGATGGTAAACGAGGTGAAAGCAACAACATACTTGGGGGTTACAATCATCGATACATTAGACTGGACACCttttcttcaaatcttaatttaagacaaaaacacatgaaagttgtttatgcatcaaaattgtaattagtctaaatgttaaggtcagcagtcatttaaacttttcattttaccttgagacactgttcagaacttttaatacgtatatacagtttctaactgcagta
gi|15 : gagttttAATACAAA-TTTTACGG-TTTTCTACAAAATGTAAACTGGACTGATTGACATTGGCATAGATTGTT-ATCTTGTGATTAA----------------------AAGAACACCTCACCT---ACATT---GTTGCGATCGACAGAC-TGTCTCAACTG------------ACC-TTTTAAAGTT----------TTTTCCCCAGAATCATGCCAAGAGTC----------ATG-C---CAC--TATGAAATGTTCTTCTA
gi|16 : CATAAAAAGACGGAAGTTAT-TTGATGGACTTTGGCAACGACTTCGACAAAGAACAGCGTAAGTG---AC--TACAAACTTGACCACTACGGTGTAAGAGGGGCTATCGCCAG-------------------T-------------------TCGATTGTATTCTGGTTATTCGGCAGGACACA--AGCAGTATTACTCGTCGGACAAT--ACTCTGTCCG-AGCTCCAATTATATCcagtagt
gi|19 : agtttGAATGCTCTTCCAGAATCTACCGATGTCATTGGTACAGTt
gi|2 : acttactttctgtcaacaattaaagctgaaagaccAATAAGAAGCACAAACAGACAGATGTTATCTTGATGGACTTTGCCAAAGCCTTCCAAAAAGTACCCCAtgattattttaagtcaaatcttaattagacaaaaaaaatgagttgtatatgcacacatctctcatatcaaaagtttgt
gi|2 : TAACGACCTACCAAATG---GT---T------TATCATCAAAAGTAAGGCTTTTTGCAGATGACTGTC-TCGAGAAAAATGTATATTATTCT----TAAGGACTGCATTCAAC--CAGACTTACTTACAGAAACTTGGC--ACATGGTAGCAA-CAGTGGCTCATGAATTCCAATGTATCCAAATGTTACTCAGTGAGAACATCAACCAG-AA-AAAGCA----AA-T-----A------A----CC---ACACTTTACA---TGGACAGATGCTTGACAATGTAAAAGCAACAAAGTATGTCGGGATTACAATTACTGAAACATTGGACTGGGCGCCACACATTGCATACCAAACTTTAATTCGACCCCAAATTGACTA----TGCGTCTCCACTCCCACATTT--------G------GGGCCAACATACATAAAATTGAAATGGTGCAAAGAACAGCAGCTCAATGGACATGTAGAAGATGGTATAATATTATTCATTTTGGGGACATGCTTG--ACAA-A-TTGCGATGATCAACCCTAGAGT-AAAGATGTA-CAA---AAG-TTTGACAC-TTTT-TACAAAATATATAATAGACTGGTTGACATTGACAGAGACCGACAACCTAATGACTAACAAAGCATCT-AGATACTCTAAAAGAATATCTCACCT---ACAAC---A---TGATCAACTGAC-TACCTCAACTG------------T-C-C-------TT----------TTTTCC-----------TCAAGAGTC----------ATA-C---CGC--TGTGGAATGCTCTTCCAGAATTTACTTTTGCGATGGCTACAGTACATTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaacgacctaccaaatggtttatcatcaaaagtaaggctttttgcagatgactgtctcgagaaaaatgtatattattcttaaggactgcattcaaccagacttacttacagaaacttggcacatggtagcaacagtggctcatgaattccaatgtatccaaatgttactcagtgagaacatcaaccagaaaaagcaaataaccacactttacatggacagatgcttgacaatgtaaaagcaacaaagtatgtcgggattacaattactgaaacattggactgggcgccacacattgcataccaaactttaattcgaccccaaattgactatgcgtctccactcccacatttggggccaacatacataaaattgaaatggtgcaaagaacagcagctcaatggacatgtagaagatggtataatattattcattttggggacatgcttgacaaattgcgatgatcaaccctagagtaaagatgtacaaaagtttgacactttttacaaaatatataatagactggttgacattgacagagaccgacaacctaatgactaacaaagcatctagatactctaaaagaatatctcacctacaacatgatcaactgactacctcaactgtccttttttcctcaagagtcataccgctgtggaatgctcttccagaatttacttttgcgatggctacagtacattc
gi|21 : aataagaagcacaaacagacagatgttatcttgatggactttgccaaagccttccaaaaagtaccccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGTACAATATGAAGCACAAACAGACAGACATTATCTTGATGGACTTTGCCAAAGTCTTCCAAAAAGTACTCCACAAGCATCTACTATACAAACTAGACCACTACAGT-------------------G-------------------
gi|23 : taAACT-AC-TGCCTCAACTGACCTTTTGATTTTTC-C-------TT----------TTTTTT-----------TCAAAATTC----------AAA-C---CAT--TATCAAACGCTCTGACAGAATCTATTGTTGGAGTGGCTACcaaga
gi|26 : ATAACAGACTGGTTGACATTGCTAGAGAATGTT-GCCTTATCGCCAATAAAGC-TATAAGATACTCTTAA
gi|27 : ac-C---CAC--TGTGGAATGCTCTTC-------------TGCAATGGCTACAGTACATTCTG
gi|3 : AGTACAATAAGAAGCACAAACAGACAGACGTTATCTTGATGGACTTTGCCAA-----TCCAAAAAGTACCCCACAATTGTCTACTATACAAACTAGACCACTACAGT-------------------G----------------------------------------------CCTCATGGTTATCAGAC----------------A--ACTCAACGG--AATGCACTCCGACCA-AGCTCCAGTAATATCTGATGGTTCACCAAGGTTCTTGCCTAGGTCCAATTCTCTTCCTATTGTTTATTAACGACCTACCGAATG---GT---T------TATCATCAAACATAAGGCTTTTTGCAGATGACT-----CTACAAAAATGTATATTATTCT----TTAGGACTGCATTGAAC--CAGACT----TACAGAAACTTGGC--ACATGGTAGCAA-GAGTGGCTCATGAATTCCAATGTATCTTAATGTTACTCAGTGAGAACATCAACCAA-AG-AAAGCA----AA-TTAATTACC----A----CT---ACACTTTACA---TTGACAGACGCTTGACAATGTAAAAGCAACAAAATATGTGGGGATTACAATTACTGAAACATTGGACTGGGCGCCACACATTGCATACCAAACTTTAATTCGACCCCAAATTGACTATG---G-GTCTCCACTCCCACATTT--------G------GAGCAAACACACATGAAATTGAAATGGTGCAAAGAACAGCAGCCTAATGGACATGTAGAAGATGGCATAATACTATTCATTTTGGGGACATGCTTA--AC-GGA-TTGCGATGATCAACCCTAGAGTTAAAGATGTAC-AA---AAG-TTTGACAC-TTTT-TACAAAATATATAATAGACTGGTTGACATTGACAGAGACCAAC-ACCTAATGACTAACAAAGCATCT-AGATACTCTAAAAGAATATCTCACCT---ACAAC---A---TGATCAACTGAC-TGCCTCAACTG------------T-C-C-------TT----------TTTTCC-----------TCAAGAGTC----------ATA-C---CGC--TGTGGATTGTTCTTCCAGAATCTACTTTTGCGATTGCTACAGTACATTCTtt
gi|4 : acaACAGTAAGAAGCACAAACA----GACAT-----------ACGTTATCGAAGT------------ATCCCACAAGCATCTACTATACAAACTAGACCACTACAGT-------------------G-------------------TATGAGGGACAACCAACTGTTGGATTGCCTCATGGTTATCAGACTGG--ACACAAGAAGTAGTACTTGACAG--AATGCACTCTGACCA-AGCTCCAGTAATATCCGG-GGTTCACCAAGGCTCCTGCCTACATCCAATTCTCTTCTTATTGTTCATTAACGACCTACTGAACA---GTATAT---------CATCAAATGTAAGGCTTTTTGCAGATGACT--C-TCTACAAAAATATATATT-CTCT----TTAGGACTGCATTGAAC--CAGACTAACTTACAGAAACTTGGT--ACATGGTAGAAA-CAGTGGCTCATGAATTTCAATGTTACCAAATGTTACTCAGTGAGAGCATCAACT---------GCA----A----------------------------------------GACA----CTTGACAAGGTGAAAGCAACAAAGTATGTGGAGGTTACAATTACTGAAAC-TTGGACTGGACGCCACACATTACATACCAAACTTTAATTTGACCCCAAATCAAGTATGCGT-CG---CCACTCCCACACTCGGGGCGAGG------GGGCCAACAAACATGATATTGAAATGGTGCAAAGA---------CGGTGGACATAT-----------TAA---------------GGACATGCTTG--AC-G-ATTTGCGACGATCAACCCTTGAGT-AAAGACATACCAATACAAGATTTGACACTTTTT-TACAAAATGCATATTAAACTGGTTGACAATGACAGAGACCTGC-ACCTAATGACTAACAACGCATCT-AGATACTCTCATAGAATATCTCGCCT---ACGTC---A---TGATCAACTGAC-TACCTCAACTG-------------CT-C-------CT----------TTTTCC-----------TCAGGAGTC----------GTA-C---CAC--TGTGGAATGCTCTTC-------------TGCGATGGCTACAGTACATTCTG
gi|5 : AGTACAATAAGAAGCACAAACAGACGGACATTATCTTGATGGACTTTGCCAAAGTCTTCCAAAAAGTACCCAACAAGCATCTACTATACAAATTAAACCACTACAGT-------------------GCGAGTGGGACAACCAACTGT-------------------TGGATTGCCTCATGGTTATCAGAC------------AA--------CGAAAG--AATGCACTCTGACCA-AGCTCCAGTAATATCCGGTGGTTCACCAAGGCTCCTGCCTATGTCCAATTCTCTTCTTATTGTTCATTAACGACCTACCGAATG---GTATAT---------CATCAAACGTAAGGCATTTTGCAGATGACTGTC-TCTACAAAAATGTATATTATTCT----TTAGGACTGCATTGAAC--CAGACTTACTTACAGAAACTTGGC--ACATGGTAGCAA-CAGTGGCTCATGAATTCCAATGTATCCAAATGTTACTCAGTGAGAACATCAACCAGAAA-AAAGCA----AATT-----AACTACCA----CT---ACACTTTACA---TTGACAGACGCTTGACAATGTAAAAGCAACAAAATATGTGGGG------ATTACTGAAACATTGGACTGGGCGCCACACATTGCATACAAAACTTTAATTCGACCCCAAATTGAGTA----TGCGTCTCCACTCCCACATTT--------G------GGGCCAACATACATGAAATTGAAATGGTGCAAAGAACATCAGCTCAATGGACATGTAGAAGATGGCATAATATTATTCATTTTGGGGACATGCTTGAAAA-A-A-TCG-GATGATCAACCCTAGAGT-AAAGATGTA-CAA---AAG-TTTGACAC-TTTC-TACAAAATGTATAATAGACTGGTTGACATTGACAGAGACCGAC-
gi|6 : caTATCAGACTGG--ACACAAGAAGTAGTACTTGACAG--AATGCAGTCTG-CCACAGCTCCAGTAATATCTGG-GGTTCACCAAGGCTCCTGCCTACGTCCAGTTCTCTTCTTATTGTTCATTAACGACCTACTGAGTG---GTATAT---------CATCAAATGTAATGCTTTTTGCAGATGACT--C-TCTACAAAAATATATA--GCTCT----TCAGGACAGTAGTGAAC--CATACTAATTGACAGAAACTTTGT--ACATGGTAGAAA-CAGTGGCTCATGAATTTCAATGTATCCAAATGTTACTCGGTGAGAACATCAACT---------GCA----A----------------------------------------GACA----CTTGACAAGGTGAAAGCAACAAAGTATGTGGAGGTTACAATTACTGAAAC-TTAGACTAGATGCCACACATTACATACCAAACTTTAATTTGACCCCAAATCAAGTATGTGT-CG---CCACTCCCACACTC--------GTGGGTTGGGGCAACAAACTTGAAATGGAAATGGTGCAAAG-ACAGT-GATC-----ATATTTAG-----GACA----------CACTT----GACA-ATTTG---C-G-A-CT------ATCAACCCTTGAGT-AAAGACATACCAATGCAAG-ATTGACAC--TTT-TACAAAATGCATAATAAACTGGTTGACAATGACAGAGACCGAC-ACCTAATGACTAACAATGCATGT-AAATACTCTCAAAGAATATCTCACCT---ACAAC---A---TGATCAACTGAC-TGCCTCAACTG-------------CC-C-------TT----------TTTTCC-----------TCAGGA---------------------------GTGGAATGCTCTTCCAAATTCTACATTTGCAATGGCTACAGTACATTCTG
gi|7 : CAGCACAGTAAGAAGCACA----GACAGACGTTATCTTGATGGACTTTGCCATAGTCTTCAAAAAAGTACCCCACAAGTGTCTACTATACAAACTAGACTACTACAGT-------------------G-------------------TAAGAGGGACAACCAACCATTGGATTGCCTTCTGGTTATCACACATG--ACA--C-AAGTAGTACTTGATGG--AACGCACTCTGACCA-AGCTCCAGTAATATCGGGTGGTTCACCAAGGCTCTTGCCTATGTCCAATTCTCTTCTTATTGTTTATTAACGACCTACCAAATGTATATATATCATGTATATCATCAAATGTAAGGCTTATTGCAGATGACTGTC-T--ATAAAAATGTATATTATTCT----TCAGGATTGCATTGAAC--CAGACTAACTTACAGAAACTTGGT--ACATGGTAGCAA-CAGCAGCTCATGAATTCCAATGTATCCAAGTCTTACTCAGTGAGAATATCAACCAG-AA-AAAACAAATTAA-T-----A------A----CCACTACACTTTACA---GGGACAGACGCTTGACAATGTAAAAGCAACAAAGTATGTGGGGATTACAATTACTGAAACATTGGACTGGACGCCACATATTGCATACCAAACTTGAATTTGACCCCAAATTGAGTATGCGT-------TACTCCCACATTC--------G------GGGCCAACAAACATGAAATTGAAATGGtt
gi|8 : GACCCCAAATTGACTATACGT----CTCCACTCCCACATTT--------T------GGGCCAACATACATGAAATTGAAATGGTGCAAAGAACAGCAGCTCAATGGACATGTTGAAGATGGCATTATACTATTCATTTTGGGGACATGCTTG--AC-GAA-TTGCGATGATCAAATCGAGAGT-AAAGATGTA-CAA---AAG-TTTGACAC-TTTT-TACAAAATATATAATAGACTGGTTGGCATTGACAAAGACCGAC-ACCTAATGACTAGCAAAGCATCT-AGATACTCTAAAAGAATATCTCACCT---ACAACAATA---CAATCAACTGAC-TGCCTCAACTG------------TCC----------T----------TTTTCC-----------TCAAGAGTC----------ATG-C---CGC--TCTGGAACGCTCTTCCAGAATCTACTTTAGCGATGGCTACAGTACATTCTG
gi|9 : AAGAGGCACTAACAGACAGATGTTATCATTATGGACTTTG
gi|9 : GACCTATCGGACG---GTATAT---------CATTAAATGTAAGGCTTTTCGCAGATGGCTGTCACCTACAATAATATA-ATTATATTCACATCAGGACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacctatcggacggtatatcattaaatgtaaggcttttcgcagatggctgtcacctacaataatataattatattcacatcaggac
blockSeqs : GTAAGAGGGGCTATCGCCAGT C AGGACACAAG T AC T C T G TAT A CATGTATAT A G A CACA TG G TT A A CAGAAA AATAGATTGCCGTT CTATG G G A T TGC GCGT GGGGCGAGG T A G C GA TA AAAAA T C T T TAT A T T T A T T A C ACA GTTG A ACCTTTTGATTTTTCCTT CCAGAATCATG TATATATAGA G AGG GA G C
blockSeqs : GTATGAGGGACAACCAACTGT A TGGACACAAG G . A . T C . A TAT C G . . . T . . A ATAAC AATTAATTACCACT TG G A A T TGT GCGT GTGGGTT C A A T TT TG ACAA . C . C TAC . . C A . A A . A . AATA . ACCTTTAAATTTGTTA . . . . . G C
blockSeqs : GCGAGTGGGACAACCAACTGT A TGGACACAAG G . A . T T . A TAT T G . . . A . . A CAGAA AATTAACTACCACT TT G A A C TGC GGT G A A A T TT TG ACGG . C . C TAC . . . T . T A . T . A . ACCTTTTAAAGTT . . . . . G C
blockSeqs : GTAAGAGGGACAACCAACCAT A ATGACAC G . A . . C . A . C G . . . T . . A CAAAG AATTAATAACCACT TT G G A T TAC CG G T A A T TT TG ACGA . C . C TGC . . . A . A A . A . A . TCCTCCT . . . . . G C
blockSeqs : G C . . . A . . T . A . T . . . . A . . G CAGAA AATAACC GG G G A C TG CG G A . A T TT TG ACA . . . . . . . . G . A A . C . A . TCCTT . . . . . G C
blockSeqs : . . . . . . . . T . . . . A . . A T A . . A . T . . G A . . . . . ACG . . . . . . . . A . A A . C . A . TCCTT . . . . . T G
blockSeqs : . . . T . . . . . . . . T A . . . . T . . T T . . . . CG . . . . . . . . A . A . . A . A . CTCCT . . . . . G A
blockSeqs : . . . . A . . . . . . CCCTT . . . . . T A
blockSeqs : . . . ACAT . . . . . T G
blockSeqs : . TCCT . . . . . T G
blockSeqs : . . . . . . A
blockSeqs : . . . . G
blockSeqCons : TGGACACAAG** ********* AATTAATTACCACT**************** ACGA*** NCCTT*******************************
originalCons : CAGTACAATAAGAAGCACAAACAGACAGACGTTATCTTGATGGACTTTGCCAAAGTCTTCCAAAAAGTACCCCACAAGCGTCTACTATACAAACTAGACCACTACAGT-------------------G-------------------T-------------------TGGATTGCCTCNTGGTTATCAGACTGG--ACA--AGAAGTAGTACTCGACGG--AATGCACTCTGACCA-AGCTCCAGTAATATCCGGTGGTTCACCAAGGCTCCTGCCTACGTCCAATTCTCTTCTTATTGTTCATTAACGACCTACCGAACG---GTATAT------TATCATCAAACGTAAGGCTTTTTGCAGATGACTGTC-TCTACAAAAATGTATATTATTCT----TCAGGACTGCATTGAAC--CAGACTAACTTACAGAAACTTGGT--ACATGGTAGCAA-CAGTGGCTCATGAATTCCAATGTATCCAAATGTTACTCGGTGAGAACATCAACCAG-AA-AAAGCA----AA-T-----A------A----CC---ACACTTTACA---TGGACAGACGCTTGACAATGTAAAAGCAACAAAGTATGTGGGGGTTACAATTACTGAAACATTGGACTGGACGCCACACATTGCATACCAAACTTTAATTCGACCCCAAATCGAGTATGCGTGCGTCTCCACTCCCACATTC--------G------GGGCCAACANACATGAAATTGAAATGGTGCAAAGAACAGCAGCTCAATGGACATGTAGAAGATGGCATAATACTATTCATTTTGGGGACATGCTTG--AC-G-A-TTGCGATGATCAACCCTAGAGT-AAAGACGTACCAATACAAG-TTTGACAC-TTTT-TACAAAATGTATAATAGACTGGTTGACATTGACAGAGACCGAC-ACCTAATGACTAACAAAGCATCT-AGATACTCTNAAAGAATATCTCACCT---ACAAC---A---CGATCAACTGAC-TGCCTCAACTG------------TCC-C-------TT----------TTTTCC-----------TCAAGAGTC----------ATA-C---CAC--TGTGGAATGCTCTTCCAGAATCTACTGTTGCGATGGCTACAGTACATTCTG
finalCons : CAGTACAATAAGAAGCACAAACAGACAGACGTTATCTTGATGGACTTTGCCAAAGTCTTCCAAAAAGTACCCCACAAGCGTCTACTATACAAACTAGACCACTACAGT-------------------G-------------------T-------------------TGGATTGCCTCNTGGTTATCAGACTGGACACAAG--AAGTAGTACTCGACGG--AATGCACTCTGACCA-AGCTCCAGTAATATCCGGTGGTTCACCAAGGCTCCTGCCTACGTCCAATTCTCTTCTTATTGTTCATTAACGACCTACCGAACG---GTATAT---------CATCAAACGTAAGGCTTTTTGCAGATGACTGTC-TCTACAAAAATGTATATTATTCT----TCAGGACTGCATTGAAC--CAGACTAACTTACAGAAACTTGGT--ACATGGTAGCAA-CAGTGGCTCATGAATTCCAATGTATCCAAATGTTACTCGGTGAGAACATCAACCAG-AA-AAAGCAAATTAATTACCACT----------------ACACTTTACA---TGGACAGACGCTTGACAATGTAAAAGCAACAAAGTATGTGGGGGTTACAATTACTGAAACATTGGACTGGACGCCACACATTGCATACCAAACTTTAATTCGACCCCAAATCGAGTATGCGTGCGTCTCCACTCCCACATTC--------G------GGGCCAACANACATGAAATTGAAATGGTGCAAAGAACAGCAGCTCAATGGACATGTAGAAGATGGCATAATACTATTCATTTTGGGGACATGCTTGACGA---A-TTGCGATGATCAACCCTAGAGT-AAAGACGTACCAATACAAG-TTTGACAC-TTTT-TACAAAATGTATAATAGACTGGTTGACATTGACAGAGACCGAC-ACCTAATGACTAACAAAGCATCT-AGATACTCTNAAAGAATATCTCACCT---ACAAC---A---CGATCAACTGAC-TGCCTCAACTGNCCTT-------------------------------TTTTCC-----------TCAAGAGTC----------ATA-C---CAC--TGTGGAATGCTCTTCCAGAATCTACTGTTGCGATGGCTACAGTACATTCTG
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GCTTACATCATAATTGTAATTAGTTTTAATACTAAGTTCAGTAGTAATTTGTATTTTACTCATTTTACTTTTAGACTCTGTACTCAGTTTTAATATATATACAGTTTCTGACTGCATATATGCCACCACTTTGTGGTAAAAATCAGAATGGATCATTTTTCGGAAGAAAGAAA
Unaligned ( gi|18 ): GTGTTGTATATGCACACAACTCTCACATCATAATTGTAATTAGTTTTAAAATAAAGGTCAATTTTCAGTTTCAATTTGTTCATTTTAATTTTAAACACTGTACGTTTCTGACTGCATATATACCAGCACCCTGTCGTGATAGTCAGTGTTGGAAGAAAGAAAT
Unaligned ( gi|20 ): TTGTAATTAGATTTAATGCAAGGTCAGCAGTAATTTTAACTTTTCGTCTTAACTTTTCACTTAACTTTTAAGACATAAATACAGTTTCTGACTACATATAAGCCACCACCTTGTTGTGATGATC
Unaligned ( gi|22 ): GCTTAACTTTAAACATATATACAGTTTTTTACTGTTATATGCCTCCACTACTCCATGACGATCAGAAATTATCGGTTACAGTTTAGGAAGAAAGAGAAAG
Unaligned ( gi|24 ): ATACAGTTTCTGACTGCATTTATGCTACCACTTTTGATGATCAGAATTAATTCATTGGTGACTATATGGAAGAGAGGGAAAAAGAAA
Unaligned ( gi|25 ): ATACAGTTTCTGACTACATATATGCTACCACTGTCTTGATGATCAGAATTCATTGGTGACTATATGGAAGAGAGAGAAAAAGA
Unaligned ( gi|28 ): TGATATCCTAACTTAATAAGATATGTAAAATGGAGTTGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111
lowQualScore : 88888888888888888888888888888888888888888888888888888888888 11 222222222222 111111 1111 1111111 444444444 11111 222222 333333333333333 1 111 22222222222222222222222222 22222222222 1111111111
lowQualScore : 0 0 11111111111111111111111111111111111111111111111111111111111 1 55 7777777777 77 1 5 7 3 555555555555 444444 3 77777 0000 66 5 66 5 3 0000000 444444444 0 3 11111 1 1 2 7 0 1 4 999999 444444444444444 1 00 0 0 1 0 0 33 1 5 1 3 0 5 7 999 4 4 8 2 4 2 1 2 4 2 888 888 888 3 44 99999999999999999999999999 77777777777 4444444444 3 555 44 3 3
lowQualScore : . . ........................................................... . .. .......... .. . . . . ............ ...... . ..... .... .. . .. . . ....... ......... . . ..... . . . . . . . ...... ............... . .. . . . . . .. . . . . . . . ... . . . . . . . . . . ... ... ... . .. .......................... ........... .......... . ... .. . .
lowQualScore : 1 1 11111111111111111111111111111111111111111111111111111111111 0 44 9999999999 99 7 7 3 7 666666666666 444444 1 11111 6666 99 5 99 0 1 8888888 999999999 8 2 22222 9 7 7 3 7 9 7 999999 444444444444444 0 22 7 4 4 9 2 11 4 0 1 8 8 0 0 000 4 4 9 6 0 3 0 0 4 6 888 888 888 6 66 77777777777777777777777777 99999999999 6666666666 1 444 22 5 3
consensus : CAGTACAATAAGAAGCACAAACAGACAGACGTTATCTTGATGGACTTTGCCAAAGTCTTCCAAAAAGTACCCCACAAGCGTCTACTATACAAACTAGACCACTACAGT-------------------G-------------------T-------------------TGGATTGCCTCNTGGTTATCAGACTGGACACAAGAAGTAGTACTCGACGG--AATGCACTCTGACCA-AGCTCCAGTAATATCCGGTGGTTCACCAAGGCTCCTGCCTACGTCCAATTCTCTTCTTATTGTTCATTAACGACCTACCGAACG------------GTATA------TCATCAAACGTAAGGCTTTTTGCAGATGACTGTC-TCTACAAAAATGTATATTATTCT----TCAGGACTGCATTGAAC--CAGACTAACTTACAGAAACTTGGT--ACATGGTAGCAA-CAGTGGCTCATGAATTCCAATGTATCCAAATGTTACTCGGTGAGAACATCAACCAG-AA-AAAGCAAATTAAT-ACCACTACACTTTACA---TGGACAGACGCTTGACAATGTGAAAGCAACAAAGTATGTGGGGGTTACAATTACTGAAACATTGGACTGGACGCCACACATTGCATACCAAACTTTAATTCGACCCCAAATCGAGTATGCGT-CGTCTCCACTCCCACATTC--------G------GGGCCAACANACATGAAATTGAAATGGTGCAAAGAACAGCAGCTCAATGGACATGTAGAAGATGGCATAATACTATTCATTTTGGGGACATGCTTG-ACGANTTGCGATGATCAACCCTAGAG-TAAAGACGTACCAATACAAG-TTTGACAC-TTTT-TACAAAATGTATAATAGACTGGTTGACATTGACAGAGACCGAC-ACCTAATGACTAACAAAGCATCT-AGATACTCTNAAAGAATATCTCACCT---ACA---AC---ACGATCAACTGAC-TGCCTCAACTG-NCC--------T-----T-----------TTTTCC-----------TCAAGAGTC----------ATA-C---CAC--TGTGGAATGCTCTTCCAGAATCTACTGTTGCGATGGCTACAGTACATTCTG
Reference ( family-1014 ) : CAGTACAATAAGAAGCACAAACAGACAGACGTTATCTTGATGGACTTTGCCAAAGTCTTCCAAAAAGTACCCCACAAGCGTCTACTATACAAACTAGACCACTACAGT-------------------G-------------------T-------------------TGGATTGCCTCNTGGTTATCAGACTGGACACAAGAAGTAGTACTCGACGG--AATGCACTCTGACCA-AGCTCCAGTAATATCCGGTGGTTCACCAAGGCTCCTGCCTACGTCCAATTCTCTTCTTATTGTTCATTAACGACCTACCGAACG------------GTATA------TCATCAAACGTAAGGCTTTTTGCAGATGACTGTC-TCTACAAAAATGTATATTATTCT----TCAGGACTGCATTGAAC--CAGACTAACTTACAGAAACTTGGT--ACATGGTAGCAA-CAGTGGCTCATGAATTCCAATGTATCCAAATGTTACTCGGTGAGAACATCAACCAG-AA-AAAGCAAATTAATTACCACTACACTTTACA---TGGACAGACGCTTGACAATGTAAAAGCAACAAAGTATGTGGGGGTTACAATTACTGAAACATTGGACTGGACGCCACACATTGCATACCAAACTTTAATTCGACCCCAAATCGAGTATGCGTGCGTCTCCACTCCCACATTC--------G------GGGCCAACANACATGAAATTGAAATGGTGCAAAGAACAGCAGCTCAATGGACATGTAGAAGATGGCATAATACTATTCATTTTGGGGACATGCTTG-ACGAATTGCGATGATCAACCCTAGAG-TAAAGACGTACCAATACAAG-TTTGACAC-TTTT-TACAAAATGTATAATAGACTGGTTGACATTGACAGAGACCGAC-ACCTAATGACTAACAAAGCATCT-AGATACTCTNAAAGAATATCTCACCT---ACA---AC---ACGATCAACTGAC-TGCCTCAACTG-NCC--------T-----T-----------TTTTCC-----------TCAAGAGTC----------ATA-C---CAC--TGTGGAATGCTCTTCCAGAATCTACTGTTGCGATGGCTACAGTACATTCTG
gi|1 : CAGTACAATAAGGAGCAAAAACAGACAGACGTTACCTTGATGGACTTTGCCAAAGTCTTCCAAACAGTACCCCACAAGCATCTACTATACAATCTAGACCACTAC--T-------------------G-------------------T-------------------TGTATTGCCTTCTGGTTATCAGACTAGACA--AGAAGTTGTACCCGACGA--AATGCACTCAGACTA-AGCTCCAGTAATATCCGGTGGTTCACCAAGGCTCTTGCCTAGGTCCAATTCTCTTCCTATTGTTTATTAACGACCTACCAAACG------------GTATACATGTATCATCGAATGTAAGGCTTTTTGCAGATGACTGTC-TCTACAAAAATGTATATTATTCT----TCAGGACGGCATTGAAC--CAGACTAACTTACAGAAACTTGGT--ACATGGTAGCAA-CAGTGGTTCGTGAATTCCAATGTATCCAAATGTTACTCGGTGAGAACATCAACCAG-AA-AAAGCAAAT-----A--ACCATACTTTACA---TGGACAGACGCTTGACAATGTAAAAGTAACAAAGTATGTGGGTATTACAATTACTGAAACATTGGACTGGACGCCACACATTGCATACCAAACTTTAATTCAACCCTAAATTGAGTATGCGTGCGTCTCCACTCCCACATTC--------G------GGGCCAACAAACATGAAATTGAAATGGTGCAAAGAACAGCAGCTCAATGGACATGTAGAAGGTGGCATAACACTAGTCATGTTTGGGACATGTT--------TTGCGATGATCAACCCTTGAG-TAAAGATGTACCAATACAAG-TTT-ACAC-TTTT-TACAAAATACATAATAGACTGGTTGACATTGACAGAGACTGAC-ACCTTATGACTAACAAAGCATCT-AGATACTCTAAAAGAATATCTCCCCT---ACA---AC---ATGATCAACTGAC-TGCCCCAACTGTCCC--------T-----T-----------TTTTCC-----------TCAAGAGTC-----------TA-C---CAC--TGTGGAATGCTCTTCCAGAATCTCCTTTCGCGATGGCTTCATTACATTCTG
gi|10 : TGAC-TGCCTTAACTG-ACA--------T-----T-----------TTTCCC-------------AAGAGTC----------ATAGCAGGCAC--GGCGAAATGCGCTTTCAGAATCTTCTGTTGCCATGGCTTAAGTATATTC
gi|11 : caattaCATACAGGAGATGACATAACACTAGACGTGTTAGGGATATGTTTG-ACAATTT---ATGGT-------AAAG-CAAAGACATATCAATATAAG-CTTGTCAT-TTTTTTACAAAATATATAATGGATTGGTTGACGCTAACAGAGACCG---------TAACTATCAAAGCTGCT-AGATACTCTCAATGAATACCTCAACTACAACA---AC---ACGCTCGACTGAC-TGTAAAAAATG-ACC--------T-----TTAAATTTGTTATTTTCC-----------TCAAGAATC----------ATA-C---CAC--TGTGGAATG--CTTCCATAATCTAATGTTGTCATGACTACAGTAGAGTCTaatccttatttaatcaaacaaatgagagttggtttatgtacacaactctcacatcaaaattgtaattagtttaaatgctaaggtcagaagtcattttaacttttcattttacatttagacactgtatttaactaatacattatatgcaatttttgcctgtatatatgctatcacactgcagtgacagtattcgaataaagaaagtaactga
gi|12 : -----T-----------TTTTTC-----------T-AAAAGTC----------ATA-C---CACGATGTG--ATGTTCTTACAGAATACACTGTTGACATGGCTGCAG
gi|13 : ctgcatttttgaagttttcaTCAACTTACATGT-TAAA--G-TCC--------TCC---T-----------TTTTCC-----------TTA-GAATCTATATATAGAATA-A---CAC--TGTGGAATGCTTTTCCAGAACATACTGATGTCATGACTATAGTAGATTCTatgatttcattaagtaacagcttaagtggacatacgaaaatgcgagttatgtgtatacatcatacatgtaaatggtcagttgtatttttttttcattttactgtaatcacctatacagctcctgacagtatatatgccacaaccctgttgttatgatcagaatatatctgttacaatatagggagaaagaa
gi|14 : taccATTAAACTGCAGAACGACTTGTAGAA-CTTGGTTTA-ACGG-AGCAAACA-TGACTAATGAAGGTCAATGCATCCAAATGTCA--------AAACATGAAA-AT-AACAAAACAAATAGATTGCCGTTACACTCTACACTATGGACAGATGGTAAACGAGGTGAAAGCAACAACATACTTGGGGGTTACAATCATCGATACATTAGACTGGACACCttttcttcaaatcttaatttaagacaaaaacacatgaaagttgtttatgcatcaaaattgtaattagtctaaatgttaaggtcagcagtcatttaaacttttcattttaccttgagacactgttcagaacttttaatacgtatatacagtttctaactgcagta
gi|15 : gagttttAATACAAA-TTTTACGG-TTTTCTACAAAATGTAAACTGGACTGATTGACATTGGCATAGATTGTT-ATCTTGTGATTA----------------------AAAGAACACCTCACCT---ACATTGTT---GCGATCGACAGAC-TGTCTCAACTG-ACCTTTTAAAGT-----T-----------TTTTCCCCAGAATCATGCCAAGAGTC----------ATG-C---CAC--TATGAAATGTTCTTCTA
gi|16 : CATAAAAAGACGGAAGTTAT-TTGATGGACTTTGGCAACGACTTCGACAAAGAACAGCGTAAGTG---AC--TACAAACTTGACCACTACGGTGTAAGAGGGGCTATCGCCAG-------------------T-------------------TCGATTGTATTCTGGTTATTCGGCAGGACACAAGCAGTATTACTCGTCGGACAAT--ACTCTGTCCG-AGCTCCAATTATATCcagtagt
gi|19 : agtttGAATGCTCTTCCAGAATCTACCGATGTCATTGGTACAGTt
gi|2 : acttactttctgtcaacaattaaagctgaaagaccAATAAGAAGCACAAACAGACAGATGTTATCTTGATGGACTTTGCCAAAGCCTTCCAAAAAGTACCCCAtgattattttaagtcaaatcttaattagacaaaaaaaatgagttgtatatgcacacatctctcatatcaaaagtttgt
gi|2 : TAACGACCTACCAAATG------------GTTTA------TCATCAAAAGTAAGGCTTTTTGCAGATGACTGTC-TCGAGAAAAATGTATATTATTCT----TAAGGACTGCATTCAAC--CAGACTTACTTACAGAAACTTGGC--ACATGGTAGCAA-CAGTGGCTCATGAATTCCAATGTATCCAAATGTTACTCAGTGAGAACATCAACCAG-AA-AAAGCAAA-TA------ACCACACTTTACA---TGGACAGATGCTTGACAATGTAAAAGCAACAAAGTATGTCGGGATTACAATTACTGAAACATTGGACTGGGCGCCACACATTGCATACCAAACTTTAATTCGACCCCAAATTGACTA----TGCGTCTCCACTCCCACATTT--------G------GGGCCAACATACATAAAATTGAAATGGTGCAAAGAACAGCAGCTCAATGGACATGTAGAAGATGGTATAATATTATTCATTTTGGGGACATGCTTG-ACAAATTGCGATGATCAACCCTAGAG-TAAAGATGTA-CAA---AAG-TTTGACAC-TTTT-TACAAAATATATAATAGACTGGTTGACATTGACAGAGACCGACAACCTAATGACTAACAAAGCATCT-AGATACTCTAAAAGAATATCTCACCT---ACA---AC---ATGATCAACTGAC-TACCTCAACTG-TCC--------T-----T-----------TTTTCC-----------TCAAGAGTC----------ATA-C---CGC--TGTGGAATGCTCTTCCAGAATTTACTTTTGCGATGGCTACAGTACATTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaacgacctaccaaatggtttatcatcaaaagtaaggctttttgcagatgactgtctcgagaaaaatgtatattattcttaaggactgcattcaaccagacttacttacagaaacttggcacatggtagcaacagtggctcatgaattccaatgtatccaaatgttactcagtgagaacatcaaccagaaaaagcaaataaccacactttacatggacagatgcttgacaatgtaaaagcaacaaagtatgtcgggattacaattactgaaacattggactgggcgccacacattgcataccaaactttaattcgaccccaaattgactatgcgtctccactcccacatttggggccaacatacataaaattgaaatggtgcaaagaacagcagctcaatggacatgtagaagatggtataatattattcattttggggacatgcttgacaaattgcgatgatcaaccctagagtaaagatgtacaaaagtttgacactttttacaaaatatataatagactggttgacattgacagagaccgacaacctaatgactaacaaagcatctagatactctaaaagaatatctcacctacaacatgatcaactgactacctcaactgtccttttttcctcaagagtcataccgctgtggaatgctcttccagaatttacttttgcgatggctacagtacattc
gi|21 : aataagaagcacaaacagacagatgttatcttgatggactttgccaaagccttccaaaaagtaccccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGTACAATATGAAGCACAAACAGACAGACATTATCTTGATGGACTTTGCCAAAGTCTTCCAAAAAGTACTCCACAAGCATCTACTATACAAACTAGACCACTACAGT-------------------G-------------------
gi|23 : taAACT-AC-TGCCTCAACTG-ACC--------TTTTGAT-----------TTTTCCTTTTTTTT---TCAAAATTC----------AAA-C---CAT--TATCAAACGCTCTGACAGAATCTATTGTTGGAGTGGCTACcaaga
gi|26 : ATAACAGACTGGTTGACATTGCTAGAGAATGTT-GCCTTATCGCCAATAAAGC-TATAAGATACTCTTAA
gi|27 : ac-C---CAC--TGTGGAATGCTCTTC-------------TGCAATGGCTACAGTACATTCTG
gi|3 : AGTACAATAAGAAGCACAAACAGACAGACGTTATCTTGATGGACTTTGCCAA-----TCCAAAAAGTACCCCACAATTGTCTACTATACAAACTAGACCACTACAGT-------------------G----------------------------------------------CCTCATGGTTATCAGAC--------------A--ACTCAACGG--AATGCACTCCGACCA-AGCTCCAGTAATATCTGATGGTTCACCAAGGTTCTTGCCTAGGTCCAATTCTCTTCCTATTGTTTATTAACGACCTACCGAATG------------GTTTA------TCATCAAACATAAGGCTTTTTGCAGATGACT-----CTACAAAAATGTATATTATTCT----TTAGGACTGCATTGAAC--CAGACT----TACAGAAACTTGGC--ACATGGTAGCAA-GAGTGGCTCATGAATTCCAATGTATCTTAATGTTACTCAGTGAGAACATCAACCAA-AG-AAAGCAAATTAATTACCACTACACTTTACA---TTGACAGACGCTTGACAATGTAAAAGCAACAAAATATGTGGGGATTACAATTACTGAAACATTGGACTGGGCGCCACACATTGCATACCAAACTTTAATTCGACCCCAAATTGACTATG-G---GTCTCCACTCCCACATTT--------G------GAGCAAACACACATGAAATTGAAATGGTGCAAAGAACAGCAGCCTAATGGACATGTAGAAGATGGCATAATACTATTCATTTTGGGGACATGCTTA-ACGGATTGCGATGATCAACCCTAGAGTTAAAGATGTA-CAA---AAG-TTTGACAC-TTTT-TACAAAATATATAATAGACTGGTTGACATTGACAGAGACCAAC-ACCTAATGACTAACAAAGCATCT-AGATACTCTAAAAGAATATCTCACCT---ACA---AC---ATGATCAACTGAC-TGCCTCAACTG-TCC--------T-----T-----------TTTTCC-----------TCAAGAGTC----------ATA-C---CGC--TGTGGATTGTTCTTCCAGAATCTACTTTTGCGATTGCTACAGTACATTCTtt
gi|4 : acaACAGTAAGAAGCACAAACA----GACAT-----------ACGTTATCGAAGT------------ATCCCACAAGCATCTACTATACAAACTAGACCACTACAGT-------------------G-------------------TATGAGGGACAACCAACTGTTGGATTGCCTCATGGTTATCAGACTGGACACAAGAAGTAGTACTTGACAG--AATGCACTCTGACCA-AGCTCCAGTAATATCCGG-GGTTCACCAAGGCTCCTGCCTACATCCAATTCTCTTCTTATTGTTCATTAACGACCTACTGAACA------------GTATA------TCATCAAATGTAAGGCTTTTTGCAGATGAC--TC-TCTACAAAAATATATATT-CTCT----TTAGGACTGCATTGAAC--CAGACTAACTTACAGAAACTTGGT--ACATGGTAGAAA-CAGTGGCTCATGAATTTCAATGTTACCAAATGTTACTCAGTGAGAGCATCAACT---------GCAAG------------ACACTT---------GAC-----------AAGGTGAAAGCAACAAAGTATGTGGAGGTTACAATTACTGAAAC-TTGGACTGGACGCCACACATTACATACCAAACTTTAATTTGACCCCAAATCAAGTATGCGT-CG---CCACTCCCACACTCGGGGCGAGG------GGGCCAACAAACATGATATTGAAATGGTGCAAAGA---------CGGTGGACATAT-----------TAA---------------GGACATGCTTG-ACGATTTGCGACGATCAACCCTTGAG-TAAAGACATACCAATACAAGATTTGACACTTTTT-TACAAAATGCATATTAAACTGGTTGACAATGACAGAGACCTGC-ACCTAATGACTAACAACGCATCT-AGATACTCTCATAGAATATCTCGCCT---ACG---TC---ATGATCAACTGAC-TACCTCAACTG-CTC--------C-----T-----------TTTTCC-----------TCAGGAGTC----------GTA-C---CAC--TGTGGAATGCTCTTC-------------TGCGATGGCTACAGTACATTCTG
gi|5 : AGTACAATAAGAAGCACAAACAGACGGACATTATCTTGATGGACTTTGCCAAAGTCTTCCAAAAAGTACCCAACAAGCATCTACTATACAAATTAAACCACTACAGT-------------------GCGAGTGGGACAACCAACTGT-------------------TGGATTGCCTCATGGTTATCAGAC----------AA--------CGAAAG--AATGCACTCTGACCA-AGCTCCAGTAATATCCGGTGGTTCACCAAGGCTCCTGCCTATGTCCAATTCTCTTCTTATTGTTCATTAACGACCTACCGAATG------------GTATA------TCATCAAACGTAAGGCATTTTGCAGATGACTGTC-TCTACAAAAATGTATATTATTCT----TTAGGACTGCATTGAAC--CAGACTTACTTACAGAAACTTGGC--ACATGGTAGCAA-CAGTGGCTCATGAATTCCAATGTATCCAAATGTTACTCAGTGAGAACATCAACCAGAAA-AAAGCAAATTAACTACCACTACACTTTACA---TTGACAGACGCTTGACAATGTAAAAGCAACAAAATATGTGGGG------ATTACTGAAACATTGGACTGGGCGCCACACATTGCATACAAAACTTTAATTCGACCCCAAATTGAGTA----TGCGTCTCCACTCCCACATTT--------G------GGGCCAACATACATGAAATTGAAATGGTGCAAAGAACATCAGCTCAATGGACATGTAGAAGATGGCATAATATTATTCATTTTGGGGACATGCTTGAAAAAATCG-GATGATCAACCCTAGAG-TAAAGATGTA-CAA---AAG-TTTGACAC-TTTC-TACAAAATGTATAATAGACTGGTTGACATTGACAGAGACCGAC-
gi|6 : caTATCAGACTGGACACAAGAAGTAGTACTTGACAG--AATGCAGTCTG-CCACAGCTCCAGTAATATCTGG-GGTTCACCAAGGCTCCTGCCTACGTCCAGTTCTCTTCTTATTGTTCATTAACGACCTACTGAGTG------------GTATA------TCATCAAATGTAATGCTTTTTGCAGATGAC--TC-TCTACAAAAATATATA--GCTCT----TCAGGACAGTAGTGAAC--CATACTAATTGACAGAAACTTTGT--ACATGGTAGAAA-CAGTGGCTCATGAATTTCAATGTATCCAAATGTTACTCGGTGAGAACATCAACT---------GCAAG------------ACACTT---------GAC-----------AAGGTGAAAGCAACAAAGTATGTGGAGGTTACAATTACTGAAAC-TTAGACTAGATGCCACACATTACATACCAAACTTTAATTTGACCCCAAATCAAGTATGTGT-CG---CCACTCCCACACTC--------GTGGGTTGGGGCAACAAACTTGAAATGGAAATGGTGCAAAG-ACAG
gi|6 : AGACACTTGACAAGGTGAAAGCAACAAAGTATGTGGAGGTTACAATTACTGAAAC-TTAGACTAGATGCCACACATTACATACCAAACTTTAATTTGACCCCAAATCAAGTATGTGT-CG---CCACTCCCACACTC--------GTGGGTTGGGGCAACAAAC------TTGAAATGG-------------A----AATGG---TGCA-AAGACAG--TGATCATATTTA------GGACACACTTG-ACAATTTGCGACTATCAACCCTTGAG-TAAAGACATACCAATGCAAG-ATTGACAC-TTTT--ACAAAATGCATAATAAACTGGTTGACAATGACAGAGACCGAC-ACCTAATGACTAACAATGCATGT-AAATACTCTCAAAGAATATCTCACCT---ACA---AC---ATGATCAACTGAC-TGCCTCAACTG-CCC--------T-----T-----------TTTTCC-----------TCAGGA---------------------------GTGGAATGCTCTTCCAAATTCTACATTTGCAATGGCTACAGTACATTCTGtgatcatatttaggacacacttgacaatttgcgactatcaacccttgagtaaagacataccaatgcaagattgacacttttacaaaatgcataataaactggttgacaatgacagagaccgacacctaatgactaacaatgcatgtaaatactctcaaagaatatctcacctacaacatgatcaactgactgcctcaactgcccttttttcctcaggagtggaatgctcttccaaattctacatttgcaatggctacagtacattctgtt
gi|7 : tatcagactggacacaagaagtagtacttgacagaatgcagtctgccacagctccagtaatatctggggttcaccaaggctcctgcctacgtccagttctcttcttattgttcattaacgacctactgagtggtatatcatcaaatgtaatgctttttgcagatgactctctacaaaaatatatagctcttcaggacagtagtgaaccatactaattgacagaaactttgtacatggtagaaacagtggctcatgaatttcaatgtatccaaatgttactcggtgagaacatcaactgcaCAGCACAGTAAGAAGCACA----GACAGACGTTATCTTGATGGACTTTGCCATAGTCTTCAAAAAAGTACCCCACAAGTGTCTACTATACAAACTAGACTACTACAGT-------------------G-------------------TAAGAGGGACAACCAACCATTGGATTGCCTTCTGGTTATCACACATGACACAAG---TAGTACTTGATGG--AACGCACTCTGACCA-AGCTCCAGTAATATCGGGTGGTTCACCAAGGCTCTTGCCTATGTCCAATTCTCTTCTTATTGTTTATTAACGACCTACCAAATGTATATATATCATGTATA------TCATCAAATGTAAGGCTTATTGCAGATGACTG---TCTATAAAAATGTATATTATTCT----TCAGGATTGCATTGAAC--CAGACTAACTTACAGAAACTTGGT--ACATGGTAGCAA-CAGCAGCTCATGAATTCCAATGTATCCAAGTCTTACTCAGTGAGAATATCAACCAG-AA-AAAACAAATTAATAACCACTACACTTTACA---GGGACAGACGCTTGACAATGTAAAAGCAACAAAGTATGTGGGGATTACAATTACTGAAACATTGGACTGGACGCCACATATTGCATACCAAACTTGAATTTGACCCCAAATTGAGTATGCGT-------TACTCCCACATTC--------G------GGGCCAACAAACATGAAATTGAAATGGtt
gi|8 : GACCCCAAATTGACTATACGT----CTCCACTCCCACATTT--------T------GGGCCAACATACATGAAATTGAAATGGTGCAAAGAACAGCAGCTCAATGGACATGTTGAAGATGGCATTATACTATTCATTTTGGGGACATGCTTG-ACGAATTGCGATGATCAAATCGAGAG-TAAAGATGTA-CAA---AAG-TTTGACAC-TTTT-TACAAAATATATAATAGACTGGTTGGCATTGACAAAGACCGAC-ACCTAATGACTAGCAAAGCATCT-AGATACTCTAAAAGAATATCTCACCT---ACA---ACAATACAATCAACTGAC-TGCCTCAACTG-TCC--------------T-----------TTTTCC-----------TCAAGAGTC----------ATG-C---CGC--TCTGGAACGCTCTTCCAGAATCTACTTTAGCGATGGCTACAGTACATTCTG
gi|9 : AAGAGGCACTAACAGACAGATGTTATCATTATGGACTTTG
gi|9 : GACCTATCGGACG------------GTATA------TCATTAAATGTAAGGCTTTTCGCAGATGGCTGTCACCTACAATAATATA-ATTATATTCACATCAGGACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacctatcggacggtatatcattaaatgtaaggcttttcgcagatggctgtcacctacaataatataattatattcacatcaggac
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GCTTACATCATAATTGTAATTAGTTTTAATACTAAGTTCAGTAGTAATTTGTATTTTACTCATTTTACTTTTAGACTCTGTACTCAGTTTTAATATATATACAGTTTCTGACTGCATATATGCCACCACTTTGTGGTAAAAATCAGAATGGATCATTTTTCGGAAGAAAGAAA
Unaligned ( gi|18 ): GTGTTGTATATGCACACAACTCTCACATCATAATTGTAATTAGTTTTAAAATAAAGGTCAATTTTCAGTTTCAATTTGTTCATTTTAATTTTAAACACTGTACGTTTCTGACTGCATATATACCAGCACCCTGTCGTGATAGTCAGTGTTGGAAGAAAGAAAT
Unaligned ( gi|20 ): TTGTAATTAGATTTAATGCAAGGTCAGCAGTAATTTTAACTTTTCGTCTTAACTTTTCACTTAACTTTTAAGACATAAATACAGTTTCTGACTACATATAAGCCACCACCTTGTTGTGATGATC
Unaligned ( gi|22 ): GCTTAACTTTAAACATATATACAGTTTTTTACTGTTATATGCCTCCACTACTCCATGACGATCAGAAATTATCGGTTACAGTTTAGGAAGAAAGAGAAAG
Unaligned ( gi|24 ): ATACAGTTTCTGACTGCATTTATGCTACCACTTTTGATGATCAGAATTAATTCATTGGTGACTATATGGAAGAGAGGGAAAAAGAAA
Unaligned ( gi|25 ): ATACAGTTTCTGACTACATATATGCTACCACTGTCTTGATGATCAGAATTCATTGGTGACTATATGGAAGAGAGAGAAAAAGA
Unaligned ( gi|28 ): TGATATCCTAACTTAATAAGATATGTAAAATGGAGTTGT