lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111
lowQualScore : 4 11 2 11 3333333 1111 555555555 11111 1 111 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888 22222 222222222 11111 5555555555555 1111111111 1 1 11 3333333333333 1 11 3333 333333333333333333333333333333333 11 22222222 6666666666666666666666 55555555555555 1 1 11
lowQualScore : 6 0 4 55 0 7 11 8 6 3333333 7777 1 444444444 88888 0 2 777 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333 888 5 00000 66 444444444 77777 7777777777777 3333333333 4 6 2 6 1 0 0 4 2 0 2 9 0 2 11 5 55 0 1 2222222222222 55 3 99 1 22 1 6666 1 555555555555555555555555555555555 0 7 5 55 3 99 3 6 88888888 77 8888888888888888888888 77 77777777777777 0 7 1 3 44 6 6 6 6
lowQualScore : . . . .. . . .. . . ....... .... . ......... ..... . . ... ..................................................................................... ... . ..... .. ......... ..... ............. .......... . . . . . . . . . . . . . . .. . .. . . ............. .. . .. . .. . .... . ................................. . . . .. . .. . . ........ .. ...................... .. .............. . . . . .. . . . .
lowQualScore : 0 0 0 77 0 8 00 0 6 8888888 2222 8 222222222 88888 3 8 888 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999 888 6 22222 11 888888888 22222 6666666666666 4444444444 4 2 0 4 2 2 5 5 8 9 7 3 5 6 66 3 99 7 4 6666666666666 66 9 66 9 00 4 7777 9 999999999999999999999999999999999 4 2 0 99 2 77 0 9 77777777 00 1111111111111111111111 99 22222222222222 0 0 0 3 00 0 0 0 0
consensus : AAGCGTTGGAGAANTCAGAGCCACGTAGGGGAGATGCTAAAA--GACCTTT-CTTGGCCGACCCTCCAACATCGTAGGGATATCAACAGTCTCGT-ATTTTCTT-AT--AAAATNCATCACGGTTTTGTCT-CGATTG-------A------CAA------G------T---------------A---N--CA-T-AT----------------C-N------T---CAAGGTC-NA--CCTC--ATC-------CCACCCT-----TTTCAGT--AT-T-----ATAGGAGATCC------CTCGC-CTATACTGATTCACTGAAATTCTCCTTCTTTCCAAGGATCATCNCATTATGGAATTCCCTTCCATGTGAGACTGTGTCTTTGGAGACAATNAACGAGTTCAAGTCTAAGTTCTAGACTTGANTTGGGTATGCTGTCAATTATTTTTA--TGACAGCTACCCCTTACACCTT-T-T-ATA-AT-GT---T-----TTACTTTTTA-TAGCGGCTTTGCATAGACCCACTTGTT----AT--TTTTT-TG-GC--TTGG--TTTAA--T---TGC--AAGTTGCCACCA-----------NCCCA-CCTTCCGCG-TGNNCAGTATAAATAGATA
Reference ( gi|2 ) : AAGTGTTAG-GAAATAGGAGCCATGTATGAGAGATGCTGGAA--GACCTTT-TTAGACCAATCCTCCAACATTGTAGGGATATTAACATTCATGT-ATTTTTTT-AT--AAAATACATCACAGTTTTGTCT-GAATTG-------A------CAA------G------T---------------A---G--CA---AT----------------C-G------T---CAAGGTC-AA--CCTC--ATC-------TTACCCT-----TTTCAGT--ATCT-----ATAGGAGATCC------CTCGC-CTGTACTGACTCACTGAAATTCTCTTTCTTTCCAAGGATCACCCCATTATGGAATACCCTTCCATGTGAGACTGTGTCTTTGGAGACCATCAACAAGTTCAAGTCTAAGTTCTAGACTTGAATTAGGTAGACTTTCAATTATTTTTAATTGACAGCTACCCATTACATCTTACATCATACATTGTAAAT-----TTACATTTTA-TAGCGACTTTGCACCGACCTACTTTTT----AT--TTTTT-TG-----TTGA--TTTAA--T---TGC--AAGTTGCCACCA-----------GTTCA-CCTTCAGTG-TGTGCAGTACAGACAGACATTAGATTAGATTACCGGTAGATGAAATGAGATGAGATGAACGTTTTTGTAACAATCT
gi|3 : AAGTGTTGGAGAATTCAGAGCCACATAGGCGAGATGCTAAAAATGACCTTT-CTTGGCCAACCCTCCAACATCATAGGGATATTAACAGCC--------TTCTT-ATTCAAAATTCATT-CAGCTGTGTCT-CTATTG-------A------CAA------A------G---------------A---C--CATT-AT----------------C-TCTCCCTT---CAATGTC-TT--CTTC--ATC-------TCACCCT-----TTTCAGT--AT---------AGGAGATCC------CTAGC-CTATACTGCTTCTCTGAAAT-CTCCTTCTTTCTAAGGATCATCACATTGTGGAATTCCATCCCATATGAGACTGTGTCT-------CC---------TTCAAGAC-----------CTTGACTTGGGTATGCTGTCAA--ATTGT--AGTAACAGCAACCTCTT---TCTT--TTTGTAAATCGT---T-----TTATTTTTTG-TAGCTGTTTTGCATAGACCTACTTGTTCTAAAT--TTCTG-TACAC--TTGA--TATA-------TAG--AAGTTGGCACCA-------------CCA-CCTTCCACGATGCTCAGTA
gi|4 : aaaaacaaaaaccacagcaataattcatgtttcgtaacgtgtttcagaacatcaacaaggtggcgctgtAAGCGTTGGAGAAATCATAGCCATGTG-GGGACATGCTAAAA--GACCTTA-TTAA----------CAAC---GTAGGGATATTAACAGTATTGTCATTTTCTT--T--AAAATTCATCAAAGTTTTATCT-CGATTG-------A------CAA------GGA----C---------------A---A--CT---AT----------------CTG------TCCCCAA--TCGAA--TCTC--AAC--------TATCCTAAAGGTCTTACTCAACCC------------ACCC------CTTTCAGTATACTAATTCACTGAACGTTTCCATCTTTCAAAGGATCACTTCATTGTGTAATTCCCT----TGTGAGAATGTGTCCCTGGAGACACTTAACGAGT--A----TA------AGACTTGGCATAGGTTTGCTGTCATTTATT-----GTAGCAACAACCC------TTTTAC--C-TACA---TAAATG----TTTCTTTTTGTTAATG-C----CAATGACTTG-TATAT----ATAATTCCG-TG-----TTAACGCTTAA--TC--TGCAGAAGTTGTCACCACCTGCCGTATTGTCCAGTTTTTAGCG-TGAGCAGTATAAATAGATttgagcgcgtatagtatcccgatat
gi|1 : gaaaaataaaaacgcattttaaattgtatattcaaagtattctgcaggaaatgaaataggtggtgttgtGGAGCCATGTAGGGGAGATGCTGGAA--GACATTT-CTTGGCCAACACTCCAACATCATAGGGATATCAATATTCTTAT-CTTTTTTA-AT---AAATACATCACGGTATTGTCG-CAGTTT-------A------CAA------GGACATTT---------------ACCTGTTCA---ATATCCAATCTAAGCGCTC-A------T---CAATATC-AA--CCTT--ATC-------TCAACCG-----TTTCAG------T-----ATAGGAGATCCACCCCACTC-C-CT-TACTGATTTACTGATAATCTCCTCTTTTACAAGATTCATCCCATTATTGAAT-TCCTTCCATGCGAAACAGCGTCCTTGGAATTAATCAAAGAGTTCAAATCTCAGTTCAAGACTTGAATTGGTTAGACTTCAAATTATTTTTAACTGAAAGCTACACAGTACACCTTATAT-ATATA--GT---T-----TTATATTTTA-AATCAAGTTTGCATAGAACCACAAGTT----AT--TTTTTGTGAGC--TTGA---TTA-------TGC--AAGTGGTTACCA-----------TCCCA-CCTGCCGTG-
gi|7 : gaaaatattgacaaaatagttattaagttatatatttataaaacacttaataggttaatgaaatgatacgttatatttataagcaccnnnnnnnnnnGAGCCATGTAGGGGAGATGCTAGAG--GACCTTT-CTTGGCCGACCATCCAACATCGTAGGGATATCAACAGTCTCGT-ATTTTTTTTAT--AAAATGCATCACGGTTTTGTCT-CGATTG-------ACAAGGACAATTATCTG------TCCCATATACAATCCCA---G--CG---AT----------------T-C------T---CAAGGTC-GA--CCTC--ATC-------CCACCCT-----TTTC-GT-----C-----ATAGGAGATCC------CTCAC-aagctcaacattgagcgtatgcagtattattgatagat
gi|5 : taaagttccaatatgtttaacaatgtaaggcctaaaagacattagtaagaccccaggtagaatttgcttcccaaagttagagcccatatacccagtctgaaatataccggttagaaatggtgcagagaacagcggtctggtggtgttgtAGTTACATAGGGGAGATACTGAAT--AACTTTTCTTAGA---A--CTC--------TAGGCTTATGAACA--------GTTTTCTT--T--AAAAT---TCACTTTTTTTTCT-CAATTATCTTTCCC------CA--------------T---------------A---T--TATT-AT----------------C--------T---CAAGGTC-TA--TCTC--AAC-------CAACCCT-----TTACAGT--A--T-----ATAGGAGATAC------CTTGC-CTGAACT-ACTC-----------CTTT-TTTTCAAAGATGATCCCATT
gi|6 : ttaacatcttgctatcatggggcactcctatccaacaaataagctctaaagtcaataggtggaacttgtcttttgctcccaagtgcatggcctataagacctgagcatgaccccaggtagaatttgttttccatattctaaaaccacatgcccagtttaaaatactctggttagaaatggtgccttgaagaaggtggtgttgtaaacgctggggaaaccgtac--AAAATATATAACGGTTTTATCCCGAAT-G-------A------CAA------G------G---------------A------CACTTAT----------------CTGT-----T---CTATATCTAATTCCTTTGATCCTCAAGGTCATCCTCA---TCCCACC--ATTTTTAATATAGGAAATCC------CAATT-CTATACCGATTCCCTGAAATTCTCATTCTTTACAAGTATCATCCCATT
gi|9 : A---AT----------------C-T------T---CAAGGTT-TT--CCTC--AAT-------CCATCCT-----TTTCAGT--AT----------AGAGAAAC------CTTGT-CAGTACTGGCTCACT--AATTgatcttggggacaattaacgacttctggacttgaactgtatatgctgtcatttatttttatgacagctacaacttaccctttgttaatcgttttacttcttaaagcgacttcgcatatacctacttcttatttttgttcgtttaatctatgcaagttgccatcaccccacctaccgcgatgcccggcattgaacgtgagcagtatcgata
gi|6 : ---AT----------------C-C------T---CAAGGTC-AT--CCTC--ATC-------CCACCAT-----TTTTAAT--AT---------AGGAAATCC------CAATT-CTATACCGATTCCCTGAAATTCTCATTCTTTACAAGTATCATCCCAT-------------------TGA-------TCTT-GGGGACAATTAACGA--------CT----TCTGGACTTGAACTGTATATGCTGTCATTTATTTTTA--TGACAGCTACAACTTAC-CCTT-TGTTA---ATCGT---T-----TTACTTCTTA-AAGCGACTTCGCATATACCTACTTCTT----A----TTTT-TG-----TTCG--TTTAA--TCTATGC--AAGTTGCCATCA-----------CCCCA-CCTgagttatattccgcgtgagacgtgtccttggagataataaacgagttcaaatctaaattttagacgtgacttgggtttgctgttaaacttttgtaacacccctttcattttgtaaatagttttagtttttgtaatagcttgcatatgcctagtttttatattatgtgtgcttggtctatgcaagtagccaccacca
gi|8 : aaaatatataacggttttatcccgaatgacaaggacacttatctgttctatatctaattcctttgTC--ATG-------CCATCAT-----TTTCAGT--ATT---------GGAGATCC------ATTGC-CCATAATGATTCACTGAAATTCTCCTTCTTTCCAAGGATCATCCCATTATGGAATTCCCTTCTGTGTGAGACTATATCCTTGGAGACTATCAAAAAGTTCAAGTCTAAGTTCTAGACTTGAAATGGGTAGACTGTCAATTCTTTTTATATGACAGCTACCCCTAACACTTTGTAT-ATA----GT---T-----TTACATTTTA-TAGCAACTTTACATAGACCCATTTGTT----A---TTTTT-TGAAAGCTTGA--TCTA-------TGC--AAGTTGCaccgcgatgcccggcattgaacgtgagcagtatcgata
gi|16 : ctttgatattatatTTTTCTT-CTTTCCAATGATCATCACAGCATGAAATTCCCTTCCATATTAGTCTGTGTCTTTGattcacgccacctgccatgg
gi|15 : TTTTCTT-CTTTCCAATGATCATCACAGCATGAAATTCCCTTCCATATTAGTCTGTGTCTTTG
gi|14 : TTTTCTT-CTTTCCAATGATCATCACAGCATGAAATTCCCTTCCATATTAGTCTGTGTCTTTG
gi|17 : TTTTCTT-CTTTCCAATGATCATCACAGCATGAAATTCCCTTCCATATTAGTCTGTGTCTTT
gi|9 : TTCCGCGTGAGAC-GTGTCCTTGGAGATAATAAACGAGTTCAAATCTAAATTTTAGACGTGACTTGGGTTTGCTGTTAA--ACTTTTG--TAAC----ACCCCTTTCATTTT-----GTAAATAGT---T-----TTAGTTTTTG-TAATAGC-TTGCATATGCCTAGTTTTT----ATA-TTATG-TGTGC--TTGG--TCTA-------TGC--AAGTAGCCACCA-----------
gi|11 : aatcttcaaggttttcctcaatccatccttttcagtatagagaaaccttgtcagtactggctcactaattgagttataGACTGTGCCATTGGAGACGATAAACGAGTTC------AAATTTTAGATTTGCTTTGGGCATGCTACCAAC--TTTTTG--TAACAACTACTCGTT---CCTT---T------TTGTAAATAGGTGTT-CTTTTTA-TAGCAGCTcca
gi|10 : gtaagT-----TTACATTTCA-TAGCAACTTTGCATTGACTCACTTGTT----A---CTTTT-TG-----TTAG--CTTGAGCTA--TGC--AAGTTGCCACTA-----------
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): ATAGTTTTATTTTTGTAGGGGCTTTACATACAGCTATTTGCTTTTGTTTCTATATTTGATCTAGCCAAGTTGACAATCCCACCACCCATGCTCATCACTGAGCGCG
Unaligned ( gi|13 ): CGCTGGAGAAATCAGTCACACAGGGGAGAAGCTGGGAGACTTTTCTAAGACTCTTTCTTCAAAATTCATAACGGTTTTGTCT
Unaligned ( gi|18 ): GAAAGGTCGATAGATAGATTGACTTTATATTTGAATAATC
Alignments
lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 11 1111111 22222222 1111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3333 11111111111111 111 11 111 444444444 1111111 11 3333 44444 2222222222222 2
lowQualScore : 3 1 11 77 3 2222222 3 2 88888888 2222 5 0 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 55 0000 66666666666666 0 0 1 2 0 2 1 1 2 2 0 9999 33333 00 1 1 333 66 33 0 1 444 9999 8 111111111 777 2 4 33 0 1 5 1111111 66 11 1111 8888 11111 66 7777777777777 5 5 0 22
lowQualScore : . . .. .. . ....... . . ........ .... . . ................................................................................................... .. .... .............. . . . . . . . . . . . .... ..... .. . . ... .. .. . . ... .... . ......... ... . . .. . . . ....... .. .. .... .... ..... .. ............. . . . ..
lowQualScore : 8 0 00 99 5 2222222 7 2 77777777 0000 9 4 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 00 3333 22222222222222 2 8 8 2 1 6 4 7 1 8 1 9999 66666 55 0 4 222 99 88 5 4 222 2222 9 444444444 888 6 4 33 2 1 0 8888888 99 99 4444 9999 44444 99 9999999999999 7 0 0 00
consensus : AAGCGTTGGAGAAATC--AGAGCCACGTAGGGGAGATGCTGGAA--GACCTTTCTTGGCCAACCCTCCAACATCGTAGGGATATTAACAGTCTTGT-A-TTTTCTTAT--AAAATNCATCACGGTTTTGTCTCGATTG-------A------CAAGGACA-T-----------TA------CCT------------------A-T--------------ATCC--------------TCAAGGTCNNCCTCATCCCACCCTTTTCAGTAT-TATAGGAGATCC------CTCGCCTATACTGATTCACTGAAATTCTCCTTCTTTCCAAGGATCATCNCATTATGGAATTCCCTTCCATGTGAGACTGTGTCTTTGGAGACAATCAACGAGTTCAAGTCTAAGTTCTAGACTTGANTTGGGTATGCTGTCAA-TTATTTT--TG--TGACAGCTACCCCTTACACCTT---TTAT-A-A-----T-GT---TTTACNTTTTA-TAGCGACTTTGCATAGACCCACTTGT-T----AT-TT--TTT--TG---GCTTG--ATCTAAT---TGC--AAGTTGCCACCACC-----------CCA-CCTNCCGCGATGCNCAGTATAGACAGACA
Reference ( family-992 ) : AAGCGTTGGAGAANTC--AGAGCCACGTAGGGGAGATGCTAAAA--GACCTTTCTTGGCCGACCCTCCAACATCGTAGGGATATCAACAGTCTCGT-A-TTTTCTTAT--AAAATNCATCACGGTTTTGTCTCGATTG-------A------CAAG-----------------TA------NC-------------------A-T--------------ATCN--------------TCAAGGTCNACCTCATCCCACCCTTTTCAGTAT-TATAGGAGATCC------CTCGCCTATACTGATTCACTGAAATTCTCCTTCTTTCCAAGGATCATCNCATTATGGAATTCCCTTCCATGTGAGACTGTGTCTTTGGAGACAATNAACGAGTTCAAGTCTAAGTTCTAGACTTGANTTGGGTATGCTGTCAA-TTATTTT--TA--TGACAGCTACCCCTTACACCTT---TTAT-A-A-----T-GT---TTTACTTTTTA-TAGCGGCTTTGCATAGACCCACTTGT-T----AT-TT--TTT--TG---GCTTG--GTTTAAT---TGC--AAGTTGCCACCANC-----------CCA-CCTTCCGCG-TGNNCAGTATAAATAGATA
gi|1 : GAGCCATGTAGGGGAGATGCTGGAA--GACATTTCTTGGCCAACACTCCAACATCATAGGGATATCAATATTCTTAT-C-TTTTTTAAT--AAA-TACATCACGGTATTGTCGCAGTTT-------A------CAAGGACATT-----------TA------CCTGTTCA-------------A-T--------------ATCCAATCTAAGCGCTCATCAATATCAACCTTATCTCAACCGTTTCAGTAT----AGGAGATCCACCCCACTC-CCT-TACTGATTTACTGATAATCTCCTCTTTTACAAGATTCATCCCATTATTGAATTCC-TTCCATGCGAAACAGCGTCCTTGGAATTAATCAAAGAGTTCAAATCTCAGTTCAAGACTTGAATTGGTTAGACT-TCAAATTATTTT--TAACTGAAAGCTACACAGTACACCTT---ATAT-ATA-----TAGT---TTTATATTTTA-AATCAAGTTTGCATAGAACCACAAGT-T----AT-TT--TTTG-TGA--GCTTG--A-TTA-----TGC--AAGTGGTTACCATC-----------CCA-CCTGCCGTG-
gi|10 : gaaaatattgacaaaatagttattaagttatatatttataaaacacttaataggttaatgaaatgatacgttatatttataagcaccnnnnnnnnnngTAT-A---------GT---TTTACATTTCA-TAGCAACTTTGCATTGACTCACTTGT-T----AC-TT--TTTGTTA---GCTTG--AGCTA-----TGC--AAGTTGCCACTACC-----------CAA-ACTGCTGTGATGCCCAACATaagctcaacattgagcgtatgcagtattattgatagat
gi|11 : aGACTGTGCCATTGGAGACGATAAACGAGTTC------AAATTTTAGATTTGCTTTGGGCATGCTACCAA-C--TTTT--TG--TAACAACTACTCGTT-C-CTTT---TTGT-A-AATAGGT-GT---T---CTTTTTA-TAGCAGCTtgagcatttccagtattgaccgatcgat
gi|13 : gtaagCGCTGGAGAAATC--AG--TCACACAGGGGAGAAGCTGGGA--GACTTTTCT
gi|13 : TTTCTT-C--AAAATTCATAACGGTTTTGTCTaagactctttcttcaaaattcataacggttttgtct
gi|14 : cgctggagaaatcagtcacacaggggagaagctgggagacttttctaagactcTTTTCTTCTTTCCAATGATCATCACAGCATGAAATTCCCTTCCATATTAGTCTGTGTCTTTG
gi|15 : TTTTCTTCTTTCCAATGATCATCACAGCATGAAATTCCCTTCCATATTAGTCTGTGTCTTTG
gi|16 : TTTTCTTCTTTCCAATGATCATCACAGCATGAAATTCCCTTCCATATTAGTCTGTGTCTTTG
gi|17 : TTTTCTTCTTTCCAATGATCATCACAGCATGAAATTCCCTTCCATATTAGTCTGTGTCTTT
gi|2 : AAGTGTTAG-GAAATA--GGAGCCATGTATGAGAGATGCTGGAA--GACCTTTTTAGACCAATCCTCCAACATTGTAGGGATATTAACATTCATGT-A-TTTTTTTAT--AAAATACATCACAGTTTTGTCTGAATTG-------A------CAAG-----------------TA------GC-------------------A----------------ATCG--------------TCAAGGTCAACCTCATCTTACCCTTTTCAGTATCTATAGGAGATCC------CTCGCCTGTACTGACTCACTGAAATTCTCTTTCTTTCCAAGGATCACCCCATTATGGAATACCCTTCCATGTGAGACTGTGTCTTTGGAGACCATCAACAAGTTCAAGTCTAAGTTCTAGACTTGAATTAGGTAGACTTTCAA-TTATTTT--TAATTGACAGCTACCCATTACATCTTACATCAT-ACAT----T-GTAAATTTACATTTTA-TAGCGACTTTGCACCGACCTACTTTT-T----AT-TT--TTT--TG-----TTG--ATTTAAT---TGC--AAGTTGCCACCAGT-----------TCA-CCTTCAGTG-TGTGCAGTACAGACAGACA
gi|3 : AAGTGTTGGAGAATTC--AGAGCCACATAGGCGAGATGCTAAAAATGACCTTTCTTGGCCAACCCTCCAACATCATAGGGATATTAACAGCCT---------TCTTATTCAAAATTCATT-CAGCTGTGTCTCTATTG-------A------CAAA-----------------GA------CC-------------------A-TT-------------ATCTCTCCCT--------TCAATGTCTTCTTCATCTCACCCTTTTCAGTAT----AGGAGATCC------CTAGCCTATACTGCTTCTCTGAAAT-CTCCTTCTTTCTAAGGATCATCACATTGTGGAATTCCATCCCATATGAGACTGTGTCTCC----------------TTCAAGAC-----------CTTGACTTGGGTATGCTGTCAA---ATTGT--AG--TAACAGCAACCTCTT--TCTTT---TTGT-A-AAT---C-GT---TTTATTTTTTG-TAGCTGTTTTGCATAGACCTACTTGT-TCTAAAT-TT--CTG--TAC--ACTTG--ATATA-----TAG--AAGTTGGCACCA-------------CCA-CCTTCCACGATGCTCAGTATttagattagattaccggtagatgaaatgagatgagatgaacgtttttgtaacaatct
gi|4 : aaaaacaaaaaccacagcaataattcatgtttcgtaacgtgtttcagaacatcaacaaggtggcgctgtAAGCGTTGGAGAAATC--ATAGCCATGT-GGGGACATGCTAAAA--GACCTTATT-------------AACAACGTAGGGATATTAACAGTATTGTCA-TTTTCTT-T--AAAATTCATCAAAGTTTTATCTCGATTG-------ACAAGGACAAC-----------------TA------TCTGTCCCCAATCGAATCTCAACT--------------ATCC--------------TAAAGGTCTTACTCAACCCACCCCTTTCAGTAT----------------------------ACTAATTCACTGAACGTTTCCATCTTTCAAAGGATCACTTCATTGTGTAATTCCCTT----GTGAGAATGTGTCCCTGGAGACACTTAACGAGT---A---TAAG------ACTTGGCATAGGTTTGCTGTCAT-TTA---T--TG--TAGCAACAACCCTTT-TACC-T---ACATAA-A-----T-GT---TT--CTTTTTGTTAATGCCAATG---------ACTTGTAT----AT-ATAATTC--CG---TGTTAACGCTTAATC--TGCAGAAGTTGTCACCACCTGCCGTATTGTCCAGTTTTTAGCG-TGAGCAGTATAAATAGATAtgagcgcgtatagtatcccgatat
gi|5 : gaaaaataaaaacgcattttaaattgtatattcaaagtattctgcaggaaatgaaataggtggtgttgtAAACGCTGGGGAAACCGTACAGTTACATAGGGGAGATACTGAAT--AACTTTTCTTAG----------AAC-TC-TAGGCTTATGAACAGT---------TTTCTT-T--AAAAT---TCACTTTTTTTTCTCAATTATCTTTCCC------CA-------------------TA------TT-------------------A-TT-------------ATC---------------TCAAGGTCTATCTCAACCAACCCTTTACAGTA--TATAGGAGATAC------CTTGC-------------CTGAACTACTCCTTTTTTTCAAAGATGATCCCATT
gi|6 : ttaacatcttgctatcatggggcactcctatccaacaaataagctctaaagtcaataggtggaacttgtcttttgctcccaagtgcatggcctataagacctgagcatgaccccaggtagaatttgttttccatattctaaaaccacatgcccagtttaaaatactctggttagaaatggtgccttgaagaaggtggtgttgt--AAAATATATAACGGTTTTATCCCGAATG-------A------CAAGGACACTTATCTGTTCTATA------TCTA-----------------A-TTCCTTTG-------ATCC--------------TCAAGGTCATCCTCATCCCACCATTTT---TAA-TATAGGAAATCC------CAATTCTATACCGATTCCCTGAAATTCTCATTCTTTACAAGTATCATCCCAT-------------------TGA-------TCTT-GGGGACAATTAACGA--------CT----TCTGGACTTGAACTGTATATGCTGTCAT-TTATTTT--TA--TGACAGCTACAACTTAC-CCTT---TGTT-A-A-----TCGT---TTTACTTCTTA-AAGCGACTTCGCATATACCTACTTCT-T----A---T--TTT--TG-----TTC--GTTTAATCTATGC--AAGTTGCCATCACC-----------CCA-CCTACCGCGATGCCCGGCAT
gi|7 : GAGCCATGTAGGGGAGATGCTAGAG--GACCTTTCTTGGCCGACCATCCAACATCGTAGGGATATCAACAGTCTCGT-ATTTTTTTTAT--AAAATGCATCACGGTTTTGTCTCGATTG-------A------CAAGGACAAT-----------TATCTGTCCC-------------------A-TATACAATCCCAGCGATTC--------------TCAAGGTCGACCTCATCCCACCCTTTTC---GT-CATAGGAGATCC------CTCACtgaacgtgagcagtatcgata
gi|8 : taaagttccaatatgtttaacaatgtaaggcctaaaagacattagtaagaccccaggtagaatttgcttcccaaagttagagcccatatacccagtctgaaatataccggttagaaatggtgcagagaacagcggtctggtggtgttgtTCATGCCATCATTTTCAGTAT-T---GGAGATCC------ATTGCCCATAATGATTCACTGAAATTCTCCTTCTTTCCAAGGATCATCCCATTATGGAATTCCCTTCTGTGTGAGACTATATCCTTGGAGACTATCAAAAAGTTCAAGTCTAAGTTCTAGACTTGAAATGGGTAGACTGTCAA-TTCTTTTTATA--TGACAGCTACCCCTAACACTTT---GTAT-A-T-----A-GT---TTTACATTTTA-TAGCAACTTTACATAGACCCATTTGT-T----A--TT--TTT--TGAAAGCTTG--ATCTA-----TGC--AAGTTGCATTCACG-----------CCA-CCTGCC
gi|9 : ctttgatattatat--------------ATCT--------------TCAAGGTTTTCCTCAATCCATCCTTTTCAGTAT-----AGAGAAAC------CTTGTCAGTACTGGCTCACT--AATT---------------GA-------GTTAT---ATTC-----CGCGTGAGAC-GTGTCCTTGGAGATAATAAACGAGTTCAAATCTAAATTTTAGACGTGACTTGGGTTTGCTGTTAA---ACTTT--TG--TAAC----ACCCCTTTCA--TT---TTGTAA-A-----TAGT---TTTAGTTTTTG-TAATAGC-TTGCATATGCCTAGTTTT-T----ATATT--ATG--TGT--GCTTG--GTCTA-----TGC--AAGTAGCCACCACC-----------atgg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ATAGTTTTATTTTTGTAGGGGCTTTACATACAGCTATTTGCTTTTGTTTCTATATTTGATCTAGCCAAGTTGACAATCCCACCACCCATGCTCATCACTGAGCGCG
Unaligned ( gi|18 ): GAAAGGTCGATAGATAGATTGACTTTATATTTGAATAATC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 22222 1111 5555555555555555555555555555555555555555555555555555555555 22222 11111111111111 11 111 444444444 1111111 333333333 33 111111 1
lowQualScore : 3 11 77 3 2 1 3 1 00000 2222 5 0 0 5 7777777777777777777777777777777777777777777777777777777777 22 11111 66666666666666 0 0 1 2 0 2 1 2 3 0 9999 33333 00 1 1 5 88 66 33 0 1 444 9999 8 000000000 777 11 3333333 0 4 1 0 9999 55 4 555555555 0 99 66 222222 33 1 0 3 1 1
lowQualScore : . .. .. . . . . . ..... .... . . . . .......................................................... .. ..... .............. . . . . . . . . . . .... ..... .. . . . .. .. .. . . ... .... . ......... ... .. ....... . . . . .... .. . ......... . .. .. ...... .. . . . . .
lowQualScore : 8 00 99 5 5 0 2 7 55555 0000 9 4 7 7 7777777777777777777777777777777777777777777777777777777777 00 66666 22222222222222 2 8 8 2 1 6 7 1 4 1 9999 66666 55 0 4 0 22 99 88 5 4 222 2222 9 111111111 000 77 0000000 5 4 1 7 4444 44 4 888888888 1 33 11 888888 00 0 7 5 0 8
consensus : AAGCGTTGGAGAAATC--AGAGCCACGTAGGGGAGATGCTGGAA--GACCTTTCTTGGCCAACCCTCCAACATCGTAGGGATATTAACAGTCTTGT-A-TTTTCTTAT--AAAATNCATCACGGTTTTGTCTCGATTGACAAGGA-C-A-TTATCT-----GT-C---AT--AAT--C----AT-----CC--------------TCAAGGTCNNCCTCATCCCACCCTTTTCAGTAT-TATAGGAGATCC------CTCGCCTATACTGATTCACTGAAATTCTCCTTCTTTCCAAGGATCATCNCATTATGGAATTCCCTTCCATGTGAGACTGTGTCTTTGGAGACAATCAACGAGTTCAAGTCTAAGTTCTAGACTTGANTTGGGTATGCTGTC-AATTATTTT--TG--TGACAGCTACCCCTTACACCTT---TTAT-A-A-----T-GT---TTTACTTTTTAT-------AGCGACTT-TGCATAGACCTACTTGTT----AT-T-TTT-T--TG---GCTTGATCTA--TGC--AAGTTG------CCACCACCCCACCTGCCGCGATGCCCAGCATTGACAGACA
Reference ( family-992 ) : AAGCGTTGGAGAAATC--AGAGCCACGTAGGGGAGATGCTGGAA--GACCTTTCTTGGCCAACCCTCCAACATCGTAGGGATATTAACAGTCTTGT-A-TTTTCTTAT--AAAATNCATCACGGTTTTGTCTCGATTGACAAGGA-C-A-TTACCT-----AT-------------------AT-----CC--------------TCAAGGTCNNCCTCATCCCACCCTTTTCAGTAT-TATAGGAGATCC------CTCGCCTATACTGATTCACTGAAATTCTCCTTCTTTCCAAGGATCATCNCATTATGGAATTCCCTTCCATGTGAGACTGTGTCTTTGGAGACAATCAACGAGTTCAAGTCTAAGTTCTAGACTTGANTTGGGTATGCTGTC-AATTATTTT--TG--TGACAGCTACCCCTTACACCTT---TTAT-A-A-----T-GT---TTTACNTTTTAT-------AGCGACTT-TGCATAGACCCACTTGTT----AT-T-TTT-T--TG---GCTTGATCTAATTGC--AAGTTG------CCACCACCCCACCTNCCGCGATGCNCAGTATAGACAGACA
gi|1 : GAGCCATGTAGGGGAGATGCTGGAA--GACATTTCTTGGCCAACACTCCAACATCATAGGGATATCAATATTCTTAT-C-TTTTTTAAT---AAATACATCACGGTATTGTCGCAGTTTACAAGGA-C-ATTTACCTGTTCAAT-------------------AT-----CCAATCTAAGCGCTCATCAATATCAACCTTATCTCAACCGTTTCAG----TATAGGAGATCCACCCCACTC-CCT-TACTGATTTACTGATAATCTCCTCTTTTACAAGATTCATCCCATTATTGAATT-CCTTCCATGCGAAACAGCGTCCTTGGAATTAATCAAAGAGTTCAAATCTCAGTTCAAGACTTGAATTGGTTAGACT-TCAAATTATTTT--TAACTGAAAGCTACACAGTACACCTT---ATAT-ATA-----TAGT---TTTATATTTTAA-------ATCAAGTT-TGCATAGAACCACAAGTT----AT-T-TTT-TG-TGA--GCTTGAT-TA--TGC--AAGTGG------TTACCATCCCACCTGCCGTGAAGCTCAACATTGA
gi|10 : gaaaatattgacaaaatagttattaagttatatatttataaaacacttaataggttaatgaaatgatacgttatatttataagcaccnnnnnnnnnngTAT-A---------GT---TTTACATTTCAT-------AGCAACTT-TGCATTGACTCACTTGTT----AC-T-TTT-TGTTA---GCTTGAGCTA--TGC--AAGTTG------CCACTACCCAAACTGCTGTGATGCCCAACATTGAgcgtatgcagtattattgatagat
gi|11 : aGACTGTGCCATTGGAGACGATAAACGAGTTC------AAATTTTAGATTTGCTTTGGGCATGCTACC-AAC--TTTT--TG--TAACAACTACTCGTT-C-CTTT---TTGT-A-AATAGGT-GT---T---CTTTTTAT-------AGCAGCTgcatttccagtattgaccgatcgat
gi|12 : gtaag-GT---TTTA-TTTTTGT-------AGGGGCTT-TACATACAGCTATTTGCT----TT-TGTTT-C--TAT--ATTTGATCTAGC--C--AAGTTGACAATCCCACCACCC
gi|13 : ataCGCTGGAGAAATC--AG--TCACACAGGGGAGAAGCTGGGA--GACTTTTCTatgctcatcactgagcgcg
gi|13 : TTTCTT-C--AAAATTCATAACGGTTTTGTCTaagactctttcttcaaaattcataacggttttgtct
gi|14 : cgctggagaaatcagtcacacaggggagaagctgggagacttttctaagactcTTTTCTTCTTTCCAATGATCATCACAGCATGAAATTCCCTTCCATATTAGTCTGTGTCTTTG
gi|15 : TTTTCTTCTTTCCAATGATCATCACAGCATGAAATTCCCTTCCATATTAGTCTGTGTCTTTG
gi|16 : TTTTCTTCTTTCCAATGATCATCACAGCATGAAATTCCCTTCCATATTAGTCTGTGTCTTTG
gi|17 : TTTTCTTCTTTCCAATGATCATCACAGCATGAAATTCCCTTCCATATTAGTCTGTGTCTTT
gi|2 : AAGTGTTAG-GAAATA--GGAGCCATGTATGAGAGATGCTGGAA--GACCTTTTTAGACCAATCCTCCAACATTGTAGGGATATTAACATTCATGT-A-TTTTTTTAT--AAAATACATCACAGTTTTGTCTGAATTGACAAGTAGC-A---------------------------------AT-----CG--------------TCAAGGTCAACCTCATCTTACCCTTTTCAGTATCTATAGGAGATCC------CTCGCCTGTACTGACTCACTGAAATTCTCTTTCTTTCCAAGGATCACCCCATTATGGAATACCCTTCCATGTGAGACTGTGTCTTTGGAGACCATCAACAAGTTCAAGTCTAAGTTCTAGACTTGAATTAGGTAGACTTTC-AATTATTTT--TAATTGACAGCTACCCATTACATCTTACATCAT-ACAT----T-GTAAATTTACATTTTAT-------AGCGACTT-TGCACCGACCTACTTTTT----AT-T-TTT-T--TG-----TTGATTTAATTGC--AAGTTG------CCACCAGTTCACCTTCAGTG-TGTGCAGTACAGACAGACA
gi|3 : AAGTGTTGGAGAATTC--AGAGCCACATAGGCGAGATGCTAAAAATGACCTTTCTTGGCCAACCCTCCAACATCATAGGGATATTAACAGCCTT---------CTTATTCAAAATTCATT-CAGCTGTGTCTCTATTGACAAAGA-CCA-TTATCT-----CT-------------------CC-----CT--------------TCAATGTCTTCTTCATCTCACCCTTTTCAGTAT----AGGAGATCC------CTAGCCTATACTGCTTCTCTGAAAT-CTCCTTCTTTCTAAGGATCATCACATTGTGGAATTCCATCCCATATGAGACTGTGTCTCC----------------TTCAAGAC-----------CTTGACTTGGGTATGCTGTC-AA--ATTGT--AG--TAACAGCAACCTCTT--TCTTT---TTGT-A-AAT---C-GT---TTTATTTTTTGT-------AGCTGTTT-TGCATAGACCTACTTGTTCTAAAT-T-TCT-G--TAC--ACTTGATATA--TAG--AAGTTG------GCACCA--CCACCTTCCACGATGCTCAGTATTGAttagattagattaccggtagatgaaatgagatgagatgaacgtttttgtaacaatct
gi|4 : aaaaacaaaaaccacagcaataattcatgtttcgtaacgtgtttcagaacatcaacaaggtggcgctgtAAGCGTTGGAGAAATC--ATAGCCATGT-GGGGACATGCTAAAA--GACCTTATT-------------AACAACGTAGGGATATTAACAGTATTGTCA-TTTTCTT-T--AAAATTCATCAAAGTTTTATCTCGATTGACAAGGA-C-AACTATCT-----GTCCCCAATCGAATCTCAACTAT-----CC--------------TAAAGGTCTTACTCAACCCACCCCTTTCAGTAT----------------------------ACTAATTCACTGAACGTTTCCATCTTTCAAAGGATCACTTCATTGTGTAATTCCCTT----GTGAGAATGTGTCCCTGGAGACACTTAACGAGT---A---TAAG------ACTTGGCATAGGTTTGCTGTC-ATTTA---T--TG--TAGCAACAACCCTTT-TACC-T---ACATAA-A-----T-GT---TT--CTTTTTGTTAATGCCAATGACTTGTATATATAATTCCGTGTT----AA-C-------------GCTTAATC----TGCAGAAGTTG------TCA-----CCACCTGCCGTATTGTCCAGTgcgcgtatagtatcccgatat
gi|5 : gaaaaataaaaacgcattttaaattgtatattcaaagtattctgcaggaaatgaaataggtggtgttgtAAACGCTGGGGAAACCGTACAGTTACATAGGGGAGATACTGAAT--AACTTTTCTTAG--AACTC----------TAGGCTTATGAACAG---------TTTTCTT-T--AAAAT---TCACTTTTTTTTCTCAATT-AT------C-T-TTCCCC-----AT-------------------ATTATTATC--------------TCAAGGTCTATCTCAACCAACCCTTTACAGTA--TATAGGAGATAC------CTTGC-------------CTGAACTACTCCTTTTTTTCAAAGATGATCCCATTttttagcgtgagcagtataaatagata
gi|6 : ttaacatcttgctatcatggggcactcctatccaacaaataagctctaaagtcaataggtggaacttgtcttttgctcccaagtgcatggcctataagacctgagcatgaccccaggtagaatttgttttccatattctaaaaccacatgcccagtttaaaatactctggttagaaatggtgccttgaagaaggtggtgttgt--AAAATATATAACGGTTTTATCCCGAATGACAAGGA-C-ACTTATCT-----GTTCTATATCTAATTCCTTTGAT-----CC--------------TCAAGGTCATCCTCATCCCACCATTTT---TAA-TATAGGAAATCC------CAATTCTATACCGATTCCCTGAAATTCTCATTCTTTACAAGTATCATCCCAT-------------------TGA-------TCTT-GGGGACAATTAACGA--------CT----TCTGGACTTGAACTGTATATGCTGTC-ATTTATTTT--TA--TGACAGCTACAACTTAC-CCTT---TGTT-A-A-----TCGT---TTTACTTCTTAA-------AGCGACTT-CGCATATACCTACTTCTT----AT-T-TTTGT--TC---GTTTAATCTA--TGC--AAGTTG------CCATCACCCCACCTACCGCGATGCCCGGCATTGA
gi|7 : GAGCCATGTAGGGGAGATGCTAGAG--GACCTTTCTTGGCCGACCATCCAACATCGTAGGGATATCAACAGTCTCGT-ATTTTTTTTAT--AAAATGCATCACGGTTTTGTCTCGATTGACAAGGA-CAA-TTATCT-----GTCCCATATACAATCCCAGCGAT-----TC--------------TCAAGGTCGACCTCATCCCACCCTTTTC---GT-CATAGGAGATCC------CTCACacgtgagcagtatcgata
gi|8 : taaagttccaatatgtttaacaatgtaaggcctaaaagacattagtaagaccccaggtagaatttgcttcccaaagttagagcccatatacccagtctgaaatataccggttagaaatggtgcagagaacagcggtctggtggtgttgtTCATGCCATCATTTTCAGTAT-T---GGAGATCC------ATTGCCCATAATGATTCACTGAAATTCTCCTTCTTTCCAAGGATCATCCCATTATGGAATTCCCTTCTGTGTGAGACTATATCCTTGGAGACTATCAAAAAGTTCAAGTCTAAGTTCTAGACTTGAAATGGGTAGACTGTC-AATTCTTTTTATA--TGACAGCTACCCCTAACACTTT---GTAT-A-T-----A-GT---TTTACATTTTAT-------AGCAACTT-TACATAGACCCATTTGTT----A--T-TTT-T--TGAAAGCTTGATCTA--TGC--AAGTTG------CATTCACGCCACCTGCC
gi|9 : ctttgatattatat-------------------AT-----CT--------------TCAAGGTTTTCCTCAATCCATCCTTTTCAGTAT-----AGAGAAAC------CTTGTCAGTACTGGCTCACT--AATT---------------GA-------GTTAT---ATTC-----CGCGTGAGAC-GTGTCCTTGGAGATAATAAACGAGTTCAAATCTAAATTTTAGACGTGACTTGGGTTTGCTGTT-AA--ACTTT--TG--TAAC----ACCCCTTTCA--TT---TTGTAA-A-----TAGT---TTTAGTTTTTGT-------AATAGC-T-TGCATATGCCTAGTTTTT----ATAT-TAT-G--TGT--GCTTGGTCTA--TGC--AAGTAG------CCACCACCatgg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GAAAGGTCGATAGATAGATTGACTTTATATTTGAATAATC
Alignments
lowQualScore : 11111111111111111111111111111111111111
lowQualScore : 11 22222 1111 222 22222222222222222222222222222222222222 22222 11111111111111 111111 111 11111 444444444 1111111 333333333
lowQualScore : 3 11 77 3 2 1 2 2 00000 2222 5 0 0 0 666 66 88888888888888888888888888888888888888 6 22 11111 66666666666666 0 0 1 2 0 2 1 2 3 0 9999 33333 00 1 1 5 88 0 555555 0 1 444 22222 4 000000000 777 22 3333333 0 4 1 9999 55 4 555555555 0 66 1 44 1 2 1 0
lowQualScore : . .. .. . . . . . ..... .... . . . . ... .. ...................................... . .. ..... .............. . . . . . . . . . . .... ..... .. . . . .. . ...... . . ... ..... . ......... ... .. ....... . . . .... .. . ......... . .. . .. . . . .
lowQualScore : 8 00 99 5 5 0 5 5 55555 0000 9 4 7 7 444 44 99999999999999999999999999999999999999 5 00 66666 22222222222222 2 8 8 2 1 6 7 1 4 1 9999 66666 55 0 4 0 22 1 999999 5 4 222 33333 4 111111111 000 11 0000000 5 4 1 4444 44 4 888888888 1 11 9 88 4 7 7 4
consensus : AAGCGTTGGAGAAATC--AGAGCCACGTAGGGGAGATGCTGGAA--GACCTTTCTTGGCCAACCCTCCAACATCGTAGGGATATTAACAGTCTTGT-A-TTTTCTTAT--AAAATNCATCACGGTTTTGTCTCGATTGACAAGGAC-A-TTATCTG-TCCC----A-----T--A--ATCT-A--------A-----TCCTCAAGGTCNNCCTCATCCCACCCTTTTCAGTAT-TATAGGAGATCC------CTCGCCTATACTGATTCACTGAAATTCTCCTTCTTTCCAAGGATCATCNCATTATGGAATTCCCTTCCATGTGAGACTGTGTCTTTGGAGACAATCAACGAGTTCAAGTCTAAGTTCTAGACTTGANTTGGGTATGCTGTC-AATTATTTT--TG--TGACAGCTACCCCTTACACCTT---T-TAT-A-A-----T-GT---TTTACTTTTTAT-------AGCGACTT-TGCATAGACCTACTTGTT----AT-T-TTT-T--TG---GCTTGATCTA--TGCAAGTTGCCACCACCCCACCTGCCGCGATGCCCAGCATTGACAGACA
Reference ( family-992 ) : AAGCGTTGGAGAAATC--AGAGCCACGTAGGGGAGATGCTGGAA--GACCTTTCTTGGCCAACCCTCCAACATCGTAGGGATATTAACAGTCTTGT-A-TTTTCTTAT--AAAATNCATCACGGTTTTGTCTCGATTGACAAGGAC-A-TTATCTG-TC------A-----T--A--ATC-----------A-----TCCTCAAGGTCNNCCTCATCCCACCCTTTTCAGTAT-TATAGGAGATCC------CTCGCCTATACTGATTCACTGAAATTCTCCTTCTTTCCAAGGATCATCNCATTATGGAATTCCCTTCCATGTGAGACTGTGTCTTTGGAGACAATCAACGAGTTCAAGTCTAAGTTCTAGACTTGANTTGGGTATGCTGTC-AATTATTTT--TG--TGACAGCTACCCCTTACACCTT---T-TAT-A-A-----T-GT---TTTACTTTTTAT-------AGCGACTT-TGCATAGACCTACTTGTT----AT-T-TTT-T--TG---GCTTGATCTA--TGCAAGTTGCCACCACCCCACCTGCCGCGATGCCCAGCATTGACAGACA
gi|1 : GAGCCATGTAGGGGAGATGCTGGAA--GACATTTCTTGGCCAACACTCCAACATCATAGGGATATCAATATTCTTAT-C-TTTTTTAAT---AAATACATCACGGTATTGTCGCAGTTTACAAGGAC-ATTTACCTGTTC------AATATCC--A--ATCT----------AAGCGCTCATCAATATCAACCTTATCTCAACCGTTTCAG----TATAGGAGATCCACCCCACTC-CCT-TACTGATTTACTGATAATCTCCTCTTTTACAAGATTCATCCCATTATTGAATT-CCTTCCATGCGAAACAGCGTCCTTGGAATTAATCAAAGAGTTCAAATCTCAGTTCAAGACTTGAATTGGTTAGACT-TCAAATTATTTT--TAACTGAAAGCTACACAGTACACCTT---A-TAT-ATA-----TAGT---TTTATATTTTAA-------ATCAAGTT-TGCATAGAACCACAAGTT----AT-T-TTT-TG-TGA--GCTTGAT-TA--TGCAAGTGGTTACCATCCCACCTGCCGTGAAGCTCAACATTGA
gi|10 : gaaaatattgacaaaatagttattaagttatatatttataaaacacttaataggttaatgaaatgatacgttatatttataagcaccnnnnnnnnnng-TAT-A---------GT---TTTACATTTCAT-------AGCAACTT-TGCATTGACTCACTTGTT----AC-T-TTT-TGTTA---GCTTGAGCTA--TGCAAGTTGCCACTACCCAAACTGCTGTGATGCCCAACATTGAgcgtatgcagtattattgatagat
gi|11 : aGACTGTGCCATTGGAGACGATAAACGAGTTC------AAATTTTAGATTTGCTTTGGGCATGCTACC-AAC--TTTT--TG--TAACAACTACTCGTT-C-CTTT---T-TGT-A-AATAGGT-GT---T---CTTTTTAT-------AGCAGCTgcatttccagtattgaccgatcgat
gi|12 : gtaag-GT---TTTA-TTTTTGT-------AGGGGCTT-TACATACAGCTATTTGCT----TT-TGTTT-C--TAT--ATTTGATCTA--GCCAAGTTG--ACAATCCCACCACCC---ATGCTCATCACTGA
gi|13 : ataCGCTGGAGAAATC--AG--TCACACAGGGGAGAAGCTGGGA--GACTTTTCTgcgcg
gi|13 : TTTCTT-C--AAAATTCATAACGGTTTTGTCTaagactctttcttcaaaattcataacggttttgtct
gi|14 : cgctggagaaatcagtcacacaggggagaagctgggagacttttctaagactcTTTTCTTCTTTCCAATGATCATCACAGCATGAAATTCCCTTCCATATTAGTCTGTGTCTTTG
gi|15 : TTTTCTTCTTTCCAATGATCATCACAGCATGAAATTCCCTTCCATATTAGTCTGTGTCTTTG
gi|16 : TTTTCTTCTTTCCAATGATCATCACAGCATGAAATTCCCTTCCATATTAGTCTGTGTCTTTG
gi|17 : TTTTCTTCTTTCCAATGATCATCACAGCATGAAATTCCCTTCCATATTAGTCTGTGTCTTT
gi|2 : AAGTGTTAG-GAAATA--GGAGCCATGTATGAGAGATGCTGGAA--GACCTTTTTAGACCAATCCTCCAACATTGTAGGGATATTAACATTCATGT-A-TTTTTTTAT--AAAATACATCACAGTTTTGTCTGAATTGACAAG----------------------------T--A--GCA-----------A-----TCGTCAAGGTCAACCTCATCTTACCCTTTTCAGTATCTATAGGAGATCC------CTCGCCTGTACTGACTCACTGAAATTCTCTTTCTTTCCAAGGATCACCCCATTATGGAATACCCTTCCATGTGAGACTGTGTCTTTGGAGACCATCAACAAGTTCAAGTCTAAGTTCTAGACTTGAATTAGGTAGACTTTC-AATTATTTT--TAATTGACAGCTACCCATTACATCTTACAT-CAT-ACAT----T-GTAAATTTACATTTTAT-------AGCGACTT-TGCACCGACCTACTTTTT----AT-T-TTT-T--TG-----TTGATTTAATTGCAAGTTGCCACCAGTTCACCTTCAGTG-TGTGCAGTACAGACAGACA
gi|3 : AAGTGTTGGAGAATTC--AGAGCCACATAGGCGAGATGCTAAAAATGACCTTTCTTGGCCAACCCTCCAACATCATAGGGATATTAACAGCCTT---------CTTATTCAAAATTCATT-CAGCTGTGTCTCTATTGACAAAGACCA-TTATCTC-TC--------------------------------------CCTTCAATGTCTTCTTCATCTCACCCTTTTCAGTAT----AGGAGATCC------CTAGCCTATACTGCTTCTCTGAAAT-CTCCTTCTTTCTAAGGATCATCACATTGTGGAATTCCATCCCATATGAGACTGTGTCTCC----------------TTCAAGAC-----------CTTGACTTGGGTATGCTGTC-AA--ATTGT--AG--TAACAGCAACCTCTT--TCTTT---T-TGT-A-AAT---C-GT---TTTATTTTTTGT-------AGCTGTTT-TGCATAGACCTACTTGTTCTAAAT-T-TCT-G--TAC--ACTTGATATA--TAGAAGTTGGCACCA--CCACCTTCCACGATGCTCAGTATTGAttagattagattaccggtagatgaaatgagatgagatgaacgtttttgtaacaatct
gi|4 : aaaaacaaaaaccacagcaataattcatgtttcgtaacgtgtttcagaacatcaacaaggtggcgctgtAAGCGTTGGAGAAATC--ATAGCCATGT-GGGGACATGCTAAAA--GACCTTATT-------------AACAACGTAGGGATATTAACAGTATTGTCA-TTTTCTT-T--AAAATTCATCAAAGTTTTATCTCGATTGACAAGGAC-AACTATCTG-TCCCCA--A-----TCGA--ATCTCAACT-----A-----TCCTAAAGGTCTTACTCAACCCACCCCTTTCAGTAT----------------------------ACTAATTCACTGAACGTTTCCATCTTTCAAAGGATCACTTCATTGTGTAATTCCCTT----GTGAGAATGTGTCCCTGGAGACACTTAACGAGT---A---TAAG------ACTTGGCATAGGTTTGCTGTC-ATTTATT-----G--TAGCAACAACCCTTT-TACCTA---CATA--A-A-----T-GT---TT--CTTTTTGTTAATGCCAATGACTTGTATATATAATTCCGTGTT----AA-C-------------GCTTAATCTG--CAGAAGTTGTCA-----CCACCTGCCGTATTGTCCAGgcgcgtatagtatcccgatat
gi|5 : gaaaaataaaaacgcattttaaattgtatattcaaagtattctgcaggaaatgaaataggtggtgttgtAAACGCTGGGGAAACCGTACAGTTACATAGGGGAGATACTGAAT--AACTTTTCTTAG--AACTCT----------AGGCTTATGAACAGT---------TTTCTT-T--AAAAT---TCACTTTTTTTTCTCAATT--------------ATCTT-TCCCC---A-----T--ATTATT-----------A-----TC-TCAAGGTCTATCTCAACCAACCCTTTACAGTA--TATAGGAGATAC------CTTGC-------------CTGAACTACTCCTTTTTTTCAAAGATGATCCCATTtttttagcgtgagcagtataaatagata
gi|6 : ttaacatcttgctatcatggggcactcctatccaacaaataagctctaaagtcaataggtggaacttgtcttttgctcccaagtgcatggcctataagacctgagcatgaccccaggtagaatttgttttccatattctaaaaccacatgcccagtttaaaatactctggttagaaatggtgccttgaagaaggtggtgttgt--AAAATATATAACGGTTTTATCCCGAATGACAAGGAC-ACTTATCTG-TT------C-----T--AT-ATCTAATTCCTTTGA-----TCCTCAAGGTCATCCTCATCCCACCATTTT---TAA-TATAGGAAATCC------CAATTCTATACCGATTCCCTGAAATTCTCATTCTTTACAAGTATCATCCCAT-------------------TGA-------TCTT-GGGGACAATTAACGA--------CT----TCTGGACTTGAACTGTATATGCTGTC-ATTTATTTT--TA--TGACAGCTACAACTTAC-CCTT---T-GTT-A-A-----TCGT---TTTACTTCTTAA-------AGCGACTT-CGCATATACCTACTTCTT----AT-T-TTTGT--TC---GTTTAATCTA--TGCAAGTTGCCATCACCCCACCTACCGCGATGCCCGGCATTGA
gi|7 : GAGCCATGTAGGGGAGATGCTAGAG--GACCTTTCTTGGCCGACCATCCAACATCGTAGGGATATCAACAGTCTCGT-ATTTTTTTTAT--AAAATGCATCACGGTTTTGTCTCGATTGACAAGGACAA-TTATCTG-TCCCATATA-----C--A--ATCCCAGCG-----A-----TTCTCAAGGTCGACCTCATCCCACCCTTTTC---GT-CATAGGAGATCC------CTCACacgtgagcagtatcgata
gi|8 : taaagttccaatatgtttaacaatgtaaggcctaaaagacattagtaagaccccaggtagaatttgcttcccaaagttagagcccatatacccagtctgaaatataccggttagaaatggtgcagagaacagcggtctggtggtgttgtTCATGCCATCATTTTCAGTAT-T---GGAGATCC------ATTGCCCATAATGATTCACTGAAATTCTCCTTCTTTCCAAGGATCATCCCATTATGGAATTCCCTTCTGTGTGAGACTATATCCTTGGAGACTATCAAAAAGTTCAAGTCTAAGTTCTAGACTTGAAATGGGTAGACTGTC-AATTCTTTTTATA--TGACAGCTACCCCTAACACTTT---G-TAT-A-T-----A-GT---TTTACATTTTAT-------AGCAACTT-TACATAGACCCATTTGTT----A--T-TTT-T--TGAAAGCTTGATCTA--TGCAAGTTGCATTCACGCCACCTGCC
gi|9 : ctttgatattatat-----------A-----TCTTCAAGGTTTTCCTCAATCCATCCTTTTCAGTAT-----AGAGAAAC------CTTGTCAGTACTGGCTCACT--AATT---------------GA-------GTTAT---ATTC-----CGCGTGAGAC-GTGTCCTTGGAGATAATAAACGAGTTCAAATCTAAATTTTAGACGTGACTTGGGTTTGCTGTT-AA--ACTTT--TG--TAAC----ACCCCTTTCA--TT---T-TGTAA-A-----TAGT---TTTAGTTTTTGT-------AATAGC-T-TGCATATGCCTAGTTTTT----ATAT-TAT-G--TGT--GCTTGGTCTA--TGCAAGTAGCCACCACCatgg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GAAAGGTCGATAGATAGATTGACTTTATATTTGAATAATC
Alignments
lowQualScore : 11 22222 1111 222 999999999999999999999999999999999999999 2222222 111111 111111111 11 111 444444444 1111111 333333333
lowQualScore : 3 11 77 3 2 1 2 2 00000 2222 5 0 0 0 666 0 555555555555555555555555555555555555555 22 4444444 222222 66 3 0 0 1 2 0 2 1 1 2 3 0 555555555 00 1 1 5 88 66 33 0 1 444 9999 8 000000000 777 22 3333333 0 4 1 9999 55 4 555555555 0 66 1 44 1 2 1 0
lowQualScore : . .. .. . . . . . ..... .... . . . . ... . ....................................... .. ....... ...... .. . . . . . . . . . . . . ......... .. . . . .. .. .. . . ... .... . ......... ... .. ....... . . . .... .. . ......... . .. . .. . . . .
lowQualScore : 8 00 99 5 5 0 5 5 55555 0000 9 4 7 7 444 7 333333333333333333333333333333333333333 00 0000000 888888 66 9 2 8 8 2 1 6 2 7 1 4 1 999999999 55 0 4 0 22 99 88 5 4 222 2222 9 111111111 000 11 0000000 5 4 1 4444 44 4 888888888 1 11 9 88 4 7 7 4
consensus : AAGCGTTGGAGAAATC--AGAGCCACGTAGGGGAGATGCTGGAA--GACCTTTCTTGGCCAACCCTCCAACATCGTAGGGATATTAACAGTCTTGT-A-TTTTCTTAT--AAAATNCATCACGGTTTTGTCTCGATTGACAAGGAC-A-TTATCTGTCCC--AT----AATC----T-A---A----T---------CCTCAAGGTCNNCCTCATCCCACCCTTTTCAGTAT-TATAGGAGATCC------CTCGCCTATACTGATTCACTGAAATTCTCCTTCTTTCCAAGGATCATCNCATTATGGAATTCCCTTCCATGTGAGACTGTGTCTTTGGAGACAATCAACGAGTTCAAGTCTAAGTTCTAGACTTGANTTGGGTATGCTGTC-AATTATTTT--TG--TGACAGCTACCCCTTACACCTT---TTAT-A-A-----T-GT---TTTACTTTTTAT-------AGCGACTT-TGCATAGACCTACTTGTT----AT-T-TTT-T--TG---GCTTGATCTA--TGCAAGTTGCCACCACCCCACCTGCCGCGATGCCCAGCATTGACAGACA
Reference ( family-992 ) : AAGCGTTGGAGAAATC--AGAGCCACGTAGGGGAGATGCTGGAA--GACCTTTCTTGGCCAACCCTCCAACATCGTAGGGATATTAACAGTCTTGT-A-TTTTCTTAT--AAAATNCATCACGGTTTTGTCTCGATTGACAAGGAC-A-TTATCTGTCCC--AT----AATC----T-A---A----T---------CCTCAAGGTCNNCCTCATCCCACCCTTTTCAGTAT-TATAGGAGATCC------CTCGCCTATACTGATTCACTGAAATTCTCCTTCTTTCCAAGGATCATCNCATTATGGAATTCCCTTCCATGTGAGACTGTGTCTTTGGAGACAATCAACGAGTTCAAGTCTAAGTTCTAGACTTGANTTGGGTATGCTGTC-AATTATTTT--TG--TGACAGCTACCCCTTACACCTT---TTAT-A-A-----T-GT---TTTACTTTTTAT-------AGCGACTT-TGCATAGACCTACTTGTT----AT-T-TTT-T--TG---GCTTGATCTA--TGCAAGTTGCCACCACCCCACCTGCCGCGATGCCCAGCATTGACAGACA
gi|1 : GAGCCATGTAGGGGAGATGCTGGAA--GACATTTCTTGGCCAACACTCCAACATCATAGGGATATCAATATTCTTAT-C-TTTTTTAAT---AAATACATCACGGTATTGTCGCAGTTTACAAGGAC-ATTTACCTGTTCA--ATATCCAATC----T-A---AGCGCT---------CATCAATATCAACCTTATCTCAACCGTTTCAG----TATAGGAGATCCACCCCACTC-CCT-TACTGATTTACTGATAATCTCCTCTTTTACAAGATTCATCCCATTATTGAATT-CCTTCCATGCGAAACAGCGTCCTTGGAATTAATCAAAGAGTTCAAATCTCAGTTCAAGACTTGAATTGGTTAGACT-TCAAATTATTTT--TAACTGAAAGCTACACAGTACACCTT---ATAT-ATA-----TAGT---TTTATATTTTAA-------ATCAAGTT-TGCATAGAACCACAAGTT----AT-T-TTT-TG-TGA--GCTTGAT-TA--TGCAAGTGGTTACCATCCCACCTGCCGTGAAGCTCAACATTGA
gi|10 : gaaaatattgacaaaatagttattaagttatatatttataaaacacttaataggttaatgaaatgatacgttatatttataagcaccnnnnnnnnnngTAT-A---------GT---TTTACATTTCAT-------AGCAACTT-TGCATTGACTCACTTGTT----AC-T-TTT-TGTTA---GCTTGAGCTA--TGCAAGTTGCCACTACCCAAACTGCTGTGATGCCCAACATTGAgcgtatgcagtattattgatagat
gi|11 : aGACTGTGCCATTGGAGACGATAAACGAGTTC------AAATTTTAGATTTGCTTTGGGCATGCTACC-AAC--TTTT--TG--TAACAACTACTCGTT-C-CTTT---TTGT-A-AATAGGT-GT---T---CTTTTTAT-------AGCAGCTgcatttccagtattgaccgatcgat
gi|12 : gtaag-GT---TTTA-TTTTTGT-------AGGGGCTT-TACATACAGCTATTTGCT----TT-TGTTT-C--TAT--ATTTGATCTA--GCCAAGTTG--ACAATCCCACCACCC---ATGCTCATCACTGA
gi|13 : ataCGCTGGAGAAATC--AG--TCACACAGGGGAGAAGCTGGGA--GACTTTTCTgcgcg
gi|13 : TTTCTT-C--AAAATTCATAACGGTTTTGTCTaagactctttcttcaaaattcataacggttttgtct
gi|14 : cgctggagaaatcagtcacacaggggagaagctgggagacttttctaagactcTTTTCTTCTTTCCAATGATCATCACAGCATGAAATTCCCTTCCATATTAGTCTGTGTCTTTG
gi|15 : TTTTCTTCTTTCCAATGATCATCACAGCATGAAATTCCCTTCCATATTAGTCTGTGTCTTTG
gi|16 : TTTTCTTCTTTCCAATGATCATCACAGCATGAAATTCCCTTCCATATTAGTCTGTGTCTTTG
gi|17 : TTTTCTTCTTTCCAATGATCATCACAGCATGAAATTCCCTTCCATATTAGTCTGTGTCTTT
gi|2 : AAGTGTTAG-GAAATA--GGAGCCATGTATGAGAGATGCTGGAA--GACCTTTTTAGACCAATCCTCCAACATTGTAGGGATATTAACATTCATGT-A-TTTTTTTAT--AAAATACATCACAGTTTTGTCTGAATTGACAAG-------TAGC------------------------A---A----T---------CGTCAAGGTCAACCTCATCTTACCCTTTTCAGTATCTATAGGAGATCC------CTCGCCTGTACTGACTCACTGAAATTCTCTTTCTTTCCAAGGATCACCCCATTATGGAATACCCTTCCATGTGAGACTGTGTCTTTGGAGACCATCAACAAGTTCAAGTCTAAGTTCTAGACTTGAATTAGGTAGACTTTC-AATTATTTT--TAATTGACAGCTACCCATTACATCTTACATCAT-ACAT----T-GTAAATTTACATTTTAT-------AGCGACTT-TGCACCGACCTACTTTTT----AT-T-TTT-T--TG-----TTGATTTAATTGCAAGTTGCCACCAGTTCACCTTCAGTG-TGTGCAGTACAGACAGACA
gi|3 : AAGTGTTGGAGAATTC--AGAGCCACATAGGCGAGATGCTAAAAATGACCTTTCTTGGCCAACCCTCCAACATCATAGGGATATTAACAGCCTT---------CTTATTCAAAATTCATT-CAGCTGTGTCTCTATTGACAAAGACCA-TTATCTCTCCC--------------------------------------TTCAATGTCTTCTTCATCTCACCCTTTTCAGTAT----AGGAGATCC------CTAGCCTATACTGCTTCTCTGAAAT-CTCCTTCTTTCTAAGGATCATCACATTGTGGAATTCCATCCCATATGAGACTGTGTCTCC----------------TTCAAGAC-----------CTTGACTTGGGTATGCTGTC-AA--ATTGT--AG--TAACAGCAACCTCTT--TCTTT---TTGT-A-AAT---C-GT---TTTATTTTTTGT-------AGCTGTTT-TGCATAGACCTACTTGTTCTAAAT-T-TCT-G--TAC--ACTTGATATA--TAGAAGTTGGCACCA--CCACCTTCCACGATGCTCAGTATTGAttagattagattaccggtagatgaaatgagatgagatgaacgtttttgtaacaatct
gi|4 : aaaaacaaaaaccacagcaataattcatgtttcgtaacgtgtttcagaacatcaacaaggtggcgctgtAAGCGTTGGAGAAATC--ATAGCCATGT-GGGGACATGCTAAAA--GACCTTATT-------------AACAACGTAGGGATATTAACAGTATTGTCA-TTTTCTT-T--AAAATTCATCAAAGTTTTATCTCGATTGACAAGGACAA-CTATCTGTCCCCAATCG--AATC----TCAACTA----T---------CCTAAAGGTCTTACTCAACCCACCCCTTTCAG----------------------------TATACTAATTCACTGAACGTTTCCATCTTTCAAAGGATCACTTCATTGTGTAATTCCCT----TGTGAGAATGTGTCCCTGGAGACACTTAACGAGT--A----TA------AGACTTGGCATAGGTTTGCTGTC-ATTTA---T--TG--TAGCAACAACCCTTT-TACC-T---ACATAA-A-----T-GT---TT--CTTTTTGTTAATGCCAATGACTTGTATATATAATTCCGTGTT----AA-C-------------GCTTAATCTG--CAGAAGTTGTCA-----CCACCTGCCGTATTGTCCAGgcgcgtatagtatcccgatat
gi|5 : gaaaaataaaaacgcattttaaattgtatattcaaagtattctgcaggaaatgaaataggtggtgttgtAAACGCTGGGGAAACCGTACAGTTACATAGGGGAGATACTGAAT--AACTTTTCTTAG--AACTCT----------AGGCTTATGAACAGT---------TTTCTT-T--AAAAT---TCACTTTTTTTTCTCAATT--------------ATCTTTCCCC-AT----ATTA----T-T---A----T---------C-TCAAGGTCTATCTCAACCAACCCTTTACAGTA--TATAGGAGATAC------CTTGC-------------CTGAACTACTCCTTTTTTTCAAAGATGATCCCATTtttttagcgtgagcagtataaatagata
gi|6 : ttaacatcttgctatcatggggcactcctatccaacaaataagctctaaagtcaataggtggaacttgtcttttgctcccaagtgcatggcctataagacctgagcatgaccccaggtagaatttgttttccatattctaaaaccacatgcccagtttaaaatactctggttagaaatggtgccttgaagaaggtggtgttgt--AAAATATATAACGGTTTTATCCCGAATGACAAGGAC-ACTTATCTGTTCT--AT----A-TC----T-A---A----TTCCTTTGATCCTCAAGGTCATCCTCATCCCACCATTTT---TAA-TATAGGAAATCC------CAATTCTATACCGATTCCCTGAAATTCTCATTCTTTACAAGTATCATCCCAT-------------------TGA-------TCTT-GGGGACAATTAACGA--------CT----TCTGGACTTGAACTGTATATGCTGTC-ATTTATTTT--TA--TGACAGCTACAACTTAC-CCTT---TGTT-A-A-----TCGT---TTTACTTCTTAA-------AGCGACTT-CGCATATACCTACTTCTT----AT-T-TTTGT--TC---GTTTAATCTA--TGCAAGTTGCCATCACCCCACCTACCGCGATGCCCGGCATTGA
gi|7 : GAGCCATGTAGGGGAGATGCTAGAG--GACCTTTCTTGGCCGACCATCCAACATCGTAGGGATATCAACAGTCTCGT-ATTTTTTTTAT--AAAATGCATCACGGTTTTGTCTCGATTGACAAGGACAA-TTATCTGTCCC--ATATACAATCCCAGC-G---A----T---------TCTCAAGGTCGACCTCATCCCACCCTTTTC---GT-CATAGGAGATCC------CTCACacgtgagcagtatcgata
gi|8 : taaagttccaatatgtttaacaatgtaaggcctaaaagacattagtaagaccccaggtagaatttgcttcccaaagttagagcccatatacccagtctgaaatataccggttagaaatggtgcagagaacagcggtctggtggtgttgtTCATGCCATCATTTTCAGTAT-T---GGAGATCC------ATTGCCCATAATGATTCACTGAAATTCTCCTTCTTTCCAAGGATCATCCCATTATGGAATTCCCTTCTGTGTGAGACTATATCCTTGGAGACTATCAAAAAGTTCAAGTCTAAGTTCTAGACTTGAAATGGGTAGACTGTC-AATTCTTTTTATA--TGACAGCTACCCCTAACACTTT---GTAT-A-T-----A-GT---TTTACATTTTAT-------AGCAACTT-TACATAGACCCATTTGTT----A--T-TTT-T--TGAAAGCTTGATCTA--TGCAAGTTGCATTCACGCCACCTGCC
gi|9 : ctttgatattatat-A---A----T---------CTTCAAGGTTTTCCTCAATCCATCCTTTTCAGTAT-----AGAGAAAC------CTTGTCAGTACTGGCTCACT--AATT---------------GA-------GTTAT---ATTC-----CGCGTGAGAC-GTGTCCTTGGAGATAATAAACGAGTTCAAATCTAAATTTTAGACGTGACTTGGGTTTGCTGTT-AA--ACTTT--TG--TAAC----ACCCCTTTCA--TT---TTGTAA-A-----TAGT---TTTAGTTTTTGT-------AATAGC-T-TGCATATGCCTAGTTTTT----ATAT-TAT-G--TGT--GCTTGGTCTA--TGCAAGTAGCCACCACCatgg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GAAAGGTCGATAGATAGATTGACTTTATATTTGAATAATC
Alignments
lowQualScore : 11 22222 1111 222 999999999999999999999999999999999999999 2222222 111111 111111111 11 111 444444444 1111111 333333333
lowQualScore : 3 11 77 3 2 1 2 2 00000 2222 5 0 0 0 666 0 555555555555555555555555555555555555555 22 4444444 222222 66 3 0 0 1 2 0 2 1 1 2 3 0 555555555 00 1 1 5 88 66 33 0 1 444 9999 8 000000000 777 22 3333333 0 4 1 9999 55 4 555555555 0 66 1 44 1 2 1 0
lowQualScore : . .. .. . . . . . ..... .... . . . . ... . ....................................... .. ....... ...... .. . . . . . . . . . . . . ......... .. . . . .. .. .. . . ... .... . ......... ... .. ....... . . . .... .. . ......... . .. . .. . . . .
lowQualScore : 8 00 99 5 5 0 5 5 55555 0000 9 4 7 7 444 7 333333333333333333333333333333333333333 00 0000000 888888 66 9 2 8 8 2 1 6 2 7 1 4 1 999999999 55 0 4 0 22 99 88 5 4 222 2222 9 111111111 000 11 0000000 5 4 1 4444 44 4 888888888 1 11 9 88 4 7 7 4
consensus : AAGCGTTGGAGAAATC--AGAGCCACGTAGGGGAGATGCTGGAA--GACCTTTCTTGGCCAACCCTCCAACATCGTAGGGATATTAACAGTCTTGT-A-TTTTCTTAT--AAAATNCATCACGGTTTTGTCTCGATTGACAAGGAC-A-TTATCTGTCCC--AT----AATC----T-A---A----T---------CCTCAAGGTCNNCCTCATCCCACCCTTTTCAGTAT-TATAGGAGATCC------CTCGCCTATACTGATTCACTGAAATTCTCCTTCTTTCCAAGGATCATCNCATTATGGAATTCCCTTCCATGTGAGACTGTGTCTTTGGAGACAATCAACGAGTTCAAGTCTAAGTTCTAGACTTGANTTGGGTATGCTGTC-AATTATTTT--TG--TGACAGCTACCCCTTACACCTT---TTAT-A-A-----T-GT---TTTACTTTTTAT-------AGCGACTT-TGCATAGACCTACTTGTT----AT-T-TTT-T--TG---GCTTGATCTA--TGCAAGTTGCCACCACCCCACCTGCCGCGATGCCCAGCATTGACAGACA
Reference ( family-992 ) : AAGCGTTGGAGAAATC--AGAGCCACGTAGGGGAGATGCTGGAA--GACCTTTCTTGGCCAACCCTCCAACATCGTAGGGATATTAACAGTCTTGT-A-TTTTCTTAT--AAAATNCATCACGGTTTTGTCTCGATTGACAAGGAC-A-TTATCTGTCCC--AT----AATC----T-A---A----T---------CCTCAAGGTCNNCCTCATCCCACCCTTTTCAGTAT-TATAGGAGATCC------CTCGCCTATACTGATTCACTGAAATTCTCCTTCTTTCCAAGGATCATCNCATTATGGAATTCCCTTCCATGTGAGACTGTGTCTTTGGAGACAATCAACGAGTTCAAGTCTAAGTTCTAGACTTGANTTGGGTATGCTGTC-AATTATTTT--TG--TGACAGCTACCCCTTACACCTT---TTAT-A-A-----T-GT---TTTACTTTTTAT-------AGCGACTT-TGCATAGACCTACTTGTT----AT-T-TTT-T--TG---GCTTGATCTA--TGCAAGTTGCCACCACCCCACCTGCCGCGATGCCCAGCATTGACAGACA
gi|1 : GAGCCATGTAGGGGAGATGCTGGAA--GACATTTCTTGGCCAACACTCCAACATCATAGGGATATCAATATTCTTAT-C-TTTTTTAAT---AAATACATCACGGTATTGTCGCAGTTTACAAGGAC-ATTTACCTGTTCA--ATATCCAATC----T-A---AGCGCT---------CATCAATATCAACCTTATCTCAACCGTTTCAG----TATAGGAGATCCACCCCACTC-CCT-TACTGATTTACTGATAATCTCCTCTTTTACAAGATTCATCCCATTATTGAATT-CCTTCCATGCGAAACAGCGTCCTTGGAATTAATCAAAGAGTTCAAATCTCAGTTCAAGACTTGAATTGGTTAGACT-TCAAATTATTTT--TAACTGAAAGCTACACAGTACACCTT---ATAT-ATA-----TAGT---TTTATATTTTAA-------ATCAAGTT-TGCATAGAACCACAAGTT----AT-T-TTT-TG-TGA--GCTTGAT-TA--TGCAAGTGGTTACCATCCCACCTGCCGTGAAGCTCAACATTGA
gi|10 : gaaaatattgacaaaatagttattaagttatatatttataaaacacttaataggttaatgaaatgatacgttatatttataagcaccnnnnnnnnnngTAT-A---------GT---TTTACATTTCAT-------AGCAACTT-TGCATTGACTCACTTGTT----AC-T-TTT-TGTTA---GCTTGAGCTA--TGCAAGTTGCCACTACCCAAACTGCTGTGATGCCCAACATTGAgcgtatgcagtattattgatagat
gi|11 : aGACTGTGCCATTGGAGACGATAAACGAGTTC------AAATTTTAGATTTGCTTTGGGCATGCTACC-AAC--TTTT--TG--TAACAACTACTCGTT-C-CTTT---TTGT-A-AATAGGT-GT---T---CTTTTTAT-------AGCAGCTgcatttccagtattgaccgatcgat
gi|12 : gtaag-GT---TTTA-TTTTTGT-------AGGGGCTT-TACATACAGCTATTTGCT----TT-TGTTT-C--TAT--ATTTGATCTA--GCCAAGTTG--ACAATCCCACCACCC---ATGCTCATCACTGA
gi|13 : ataCGCTGGAGAAATC--AG--TCACACAGGGGAGAAGCTGGGA--GACTTTTCTgcgcg
gi|13 : TTTCTT-C--AAAATTCATAACGGTTTTGTCTaagactctttcttcaaaattcataacggttttgtct
gi|14 : cgctggagaaatcagtcacacaggggagaagctgggagacttttctaagactcTTTTCTTCTTTCCAATGATCATCACAGCATGAAATTCCCTTCCATATTAGTCTGTGTCTTTG
gi|15 : TTTTCTTCTTTCCAATGATCATCACAGCATGAAATTCCCTTCCATATTAGTCTGTGTCTTTG
gi|16 : TTTTCTTCTTTCCAATGATCATCACAGCATGAAATTCCCTTCCATATTAGTCTGTGTCTTTG
gi|17 : TTTTCTTCTTTCCAATGATCATCACAGCATGAAATTCCCTTCCATATTAGTCTGTGTCTTT
gi|2 : AAGTGTTAG-GAAATA--GGAGCCATGTATGAGAGATGCTGGAA--GACCTTTTTAGACCAATCCTCCAACATTGTAGGGATATTAACATTCATGT-A-TTTTTTTAT--AAAATACATCACAGTTTTGTCTGAATTGACAAG-------TAGC------------------------A---A----T---------CGTCAAGGTCAACCTCATCTTACCCTTTTCAGTATCTATAGGAGATCC------CTCGCCTGTACTGACTCACTGAAATTCTCTTTCTTTCCAAGGATCACCCCATTATGGAATACCCTTCCATGTGAGACTGTGTCTTTGGAGACCATCAACAAGTTCAAGTCTAAGTTCTAGACTTGAATTAGGTAGACTTTC-AATTATTTT--TAATTGACAGCTACCCATTACATCTTACATCAT-ACAT----T-GTAAATTTACATTTTAT-------AGCGACTT-TGCACCGACCTACTTTTT----AT-T-TTT-T--TG-----TTGATTTAATTGCAAGTTGCCACCAGTTCACCTTCAGTG-TGTGCAGTACAGACAGACA
gi|3 : AAGTGTTGGAGAATTC--AGAGCCACATAGGCGAGATGCTAAAAATGACCTTTCTTGGCCAACCCTCCAACATCATAGGGATATTAACAGCCTT---------CTTATTCAAAATTCATT-CAGCTGTGTCTCTATTGACAAAGACCA-TTATCTCTCCC--------------------------------------TTCAATGTCTTCTTCATCTCACCCTTTTCAGTAT----AGGAGATCC------CTAGCCTATACTGCTTCTCTGAAAT-CTCCTTCTTTCTAAGGATCATCACATTGTGGAATTCCATCCCATATGAGACTGTGTCTCC----------------TTCAAGAC-----------CTTGACTTGGGTATGCTGTC-AA--ATTGT--AG--TAACAGCAACCTCTT--TCTTT---TTGT-A-AAT---C-GT---TTTATTTTTTGT-------AGCTGTTT-TGCATAGACCTACTTGTTCTAAAT-T-TCT-G--TAC--ACTTGATATA--TAGAAGTTGGCACCA--CCACCTTCCACGATGCTCAGTATTGAttagattagattaccggtagatgaaatgagatgagatgaacgtttttgtaacaatct
gi|4 : aaaaacaaaaaccacagcaataattcatgtttcgtaacgtgtttcagaacatcaacaaggtggcgctgtAAGCGTTGGAGAAATC--ATAGCCATGT-GGGGACATGCTAAAA--GACCTTATT-------------AACAACGTAGGGATATTAACAGTATTGTCA-TTTTCTT-T--AAAATTCATCAAAGTTTTATCTCGATTGACAAGGACAA-CTATCTGTCCCCAATCG--AATC----TCAACTA----T---------CCTAAAGGTCTTACTCAACCCACCCCTTTCAG----------------------------TATACTAATTCACTGAACGTTTCCATCTTTCAAAGGATCACTTCATTGTGTAATTCCCT----TGTGAGAATGTGTCCCTGGAGACACTTAACGAGT--A----TA------AGACTTGGCATAGGTTTGCTGTC-ATTTA---T--TG--TAGCAACAACCCTTT-TACC-T---ACATAA-A-----T-GT---TT--CTTTTTGTTAATGCCAATGACTTGTATATATAATTCCGTGTT----AA-C-------------GCTTAATCTG--CAGAAGTTGTCA-----CCACCTGCCGTATTGTCCAGgcgcgtatagtatcccgatat
gi|5 : gaaaaataaaaacgcattttaaattgtatattcaaagtattctgcaggaaatgaaataggtggtgttgtAAACGCTGGGGAAACCGTACAGTTACATAGGGGAGATACTGAAT--AACTTTTCTTAG--AACTCT----------AGGCTTATGAACAGT---------TTTCTT-T--AAAAT---TCACTTTTTTTTCTCAATT--------------ATCTTTCCCC-AT----ATTA----T-T---A----T---------C-TCAAGGTCTATCTCAACCAACCCTTTACAGTA--TATAGGAGATAC------CTTGC-------------CTGAACTACTCCTTTTTTTCAAAGATGATCCCATTtttttagcgtgagcagtataaatagata
gi|6 : ttaacatcttgctatcatggggcactcctatccaacaaataagctctaaagtcaataggtggaacttgtcttttgctcccaagtgcatggcctataagacctgagcatgaccccaggtagaatttgttttccatattctaaaaccacatgcccagtttaaaatactctggttagaaatggtgccttgaagaaggtggtgttgt--AAAATATATAACGGTTTTATCCCGAATGACAAGGAC-ACTTATCTGTTCT--AT----A-TC----T-A---A----TTCCTTTGATCCTCAAGGTCATCCTCATCCCACCATTTT---TAA-TATAGGAAATCC------CAATTCTATACCGATTCCCTGAAATTCTCATTCTTTACAAGTATCATCCCAT-------------------TGA-------TCTT-GGGGACAATTAACGA--------CT----TCTGGACTTGAACTGTATATGCTGTC-ATTTATTTT--TA--TGACAGCTACAACTTAC-CCTT---TGTT-A-A-----TCGT---TTTACTTCTTAA-------AGCGACTT-CGCATATACCTACTTCTT----AT-T-TTTGT--TC---GTTTAATCTA--TGCAAGTTGCCATCACCCCACCTACCGCGATGCCCGGCATTGA
gi|7 : GAGCCATGTAGGGGAGATGCTAGAG--GACCTTTCTTGGCCGACCATCCAACATCGTAGGGATATCAACAGTCTCGT-ATTTTTTTTAT--AAAATGCATCACGGTTTTGTCTCGATTGACAAGGACAA-TTATCTGTCCC--ATATACAATCCCAGC-G---A----T---------TCTCAAGGTCGACCTCATCCCACCCTTTTC---GT-CATAGGAGATCC------CTCACacgtgagcagtatcgata
gi|8 : taaagttccaatatgtttaacaatgtaaggcctaaaagacattagtaagaccccaggtagaatttgcttcccaaagttagagcccatatacccagtctgaaatataccggttagaaatggtgcagagaacagcggtctggtggtgttgtTCATGCCATCATTTTCAGTAT-T---GGAGATCC------ATTGCCCATAATGATTCACTGAAATTCTCCTTCTTTCCAAGGATCATCCCATTATGGAATTCCCTTCTGTGTGAGACTATATCCTTGGAGACTATCAAAAAGTTCAAGTCTAAGTTCTAGACTTGAAATGGGTAGACTGTC-AATTCTTTTTATA--TGACAGCTACCCCTAACACTTT---GTAT-A-T-----A-GT---TTTACATTTTAT-------AGCAACTT-TACATAGACCCATTTGTT----A--T-TTT-T--TGAAAGCTTGATCTA--TGCAAGTTGCATTCACGCCACCTGCC
gi|9 : ctttgatattatat-A---A----T---------CTTCAAGGTTTTCCTCAATCCATCCTTTTCAGTAT-----AGAGAAAC------CTTGTCAGTACTGGCTCACT--AATT---------------GA-------GTTAT---ATTC-----CGCGTGAGAC-GTGTCCTTGGAGATAATAAACGAGTTCAAATCTAAATTTTAGACGTGACTTGGGTTTGCTGTT-AA--ACTTT--TG--TAAC----ACCCCTTTCA--TT---TTGTAA-A-----TAGT---TTTAGTTTTTGT-------AATAGC-T-TGCATATGCCTAGTTTTT----ATAT-TAT-G--TGT--GCTTGGTCTA--TGCAAGTAGCCACCACCatgg
blockSeqs : A GT AT A C C C C GTCA ATTC T CA CAATCGAATCTCAACTATCC AA TATCTAT . CG G T A A T A G A AAGTCTAAG T A . TT TA AT G ACA ACAT A AATAGGT AAA CA TAATGCC G G CTAA TA G TTGAAA AT C CC G T A
blockSeqs : A . . T C C C C GTAT AT A AA ATATCTAATTCCTTTGATCC TT TAATAT . AG A T A A T T C C AAGTCTAAG A T . TT . . A ACA T A CATT . CT . . C . C . TGTTA . C TC C T A
blockSeqs : G . . T C T C A GTA AT T AC ATATACAATCCCAGCGATTC TT TATAT . TG A T A A T T A T AAATCTAAA C G . TT . . C TCA T . AATC . CA . . G . T . CTAT . G GT T C A
blockSeqs : . . . T . C . C . C T AA CATATTATTATC TA GTCAT . AT A T A A T T A T AAGAC C G . TT . . T TA A . ATC . TT . . G . T . GTAC . T CC T T T
blockSeqs : . . . . . . . T A . AATCG AT TATT . CA A G C G T T T C AAA A G . C . . C AC T . ATA . CT . . T . T . GTTC . C CG G C A
blockSeqs : . T G . T GA TAT . TG G G A G C A A A ATA A G . . . . C C G . AT . CT . . T . A . GTGT . C CC A . .
blockSeqs : . TT TAT . TG . G T T T A . . CT C G . . . . C T T . TA . CA . . G . T . TTG . C . G
blockSeqs : . . . A C G . A . . . GT . . T . . . . . . .
blockSeqs : G C . . A . T .
blockSeqs : G C . . A
blockSeqs : . . .
blockSeqCons : GTA** AT** ****** CG ** NTGC*****
originalCons : AAGCGTTGGAGAAATC--AGAGCCACGTAGGGGAGATGCTGGAA--GACCTTTCTTGGCCAACCCTCCAACATCGTAGGGATATTAACAGTCTTGT-A-TTTTCTTAT--AAAATNCATCACGGTTTTGTCTCGATTGACAAGGAC-A-TTATCTGTCCC--AT----AATC----T-A---A----T---------CCTCAAGGTCNNCCTCATCCCACCCTTTTCAGTAT-TATAGGAGATCC------CTCGCCTATACTGATTCACTGAAATTCTCCTTCTTTCCAAGGATCATCNCATTATGGAATTCCCTTCCATGTGAGACTGTGTCTTTGGAGACAATCAACGAGTTCAAGTCTAAGTTCTAGACTTGANTTGGGTATGCTGTC-AATTATTTT--TG--TGACAGCTACCCCTTACACCTT---TTAT-A-A-----T-GT---TTTACTTTTTAT-------AGCGACTT-TGCATAGACCTACTTGTT----AT-T-TTT-T--TG---GCTTGATCTA--TGCAAGTTGCCACCACCCCACCTGCCGCGATGCCCAGCATTGACAGACA
finalCons : AAGCGTTGGAGAAATC--AGAGCCACGTAGGGGAGATGCTGGAA--GACCTTTCTTGGCCAACCCTCCAACATCGTAGGGATATTAACAGTCTTGTA--TTTTCTTAT--AAAATNCATCACGGTTTTGTCTCGATTGACAAGGAC-A-TTATCTGTCCC--AT----AATC----T-A---A----T---------CCTCAAGGTCNNCCTCATCCCACCCTTTTCAGTAT-TATAGGAGATCC------CTCGCCTATACTGATTCACTGAAATTCTCCTTCTTTCCAAGGATCATCNCATTATGGAATTCCCTTCCATGTGAGACTGTGTCTTTGGAGACAATCAACGAGTTCAAGTCTAAGTTCTAGACTTGANTTGGGTATGCTGTC-AATTATTTT--TG--TGACAGCTACCCCTTACACCTT---TTAT-A-A-----T-GT---TTTACTTTTTAT-------AGCGACTT-TGCATAGACCTACTTGTT----AT-T-TTTNTGC-----GCTTGATCTA--TGCAAGTTGCCACCACCCCACCTGCCGCGATGCCCAGCATTGACAGACA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GAAAGGTCGATAGATAGATTGACTTTATATTTGAATAATC
Alignments
lowQualScore : 11 22222 1111 222 999999999999999999999999999999999999999 22222 11111111111111 11 111 444444444 1111111 11111111 111111
lowQualScore : 3 11 77 3 2 1 2 2 00000 2222 5 0 0 0 666 0 555555555555555555555555555555555555555 22 11111 66666666666666 0 0 1 2 0 2 1 2 3 0 9999 33333 00 1 1 5 88 66 33 0 1 444 9999 8 000000000 777 22 3333333 0 4 1 33333333 4 555555 0 66 1 44 1 2 1 0
lowQualScore : . .. .. . . . . . ..... .... . . . . ... . ....................................... .. ..... .............. . . . . . . . . . . .... ..... .. . . . .. .. .. . . ... .... . ......... ... .. ....... . . . ........ . ...... . .. . .. . . . .
lowQualScore : 8 00 99 5 5 0 5 5 55555 0000 9 4 7 7 444 7 333333333333333333333333333333333333333 00 66666 22222222222222 2 8 8 2 1 6 7 1 4 1 9999 66666 55 0 4 0 22 99 88 5 4 222 2222 9 111111111 000 11 0000000 5 4 1 11111111 4 000000 1 11 9 88 4 7 7 4
consensus : AAGCGTTGGAGAAATC--AGAGCCACGTAGGGGAGATGCTGGAA--GACCTTTCTTGGCCAACCCTCCAACATCGTAGGGATATTAACAGTCTTGT-A-TTTTCTTAT--AAAATNCATCACGGTTTTGTCTCGATTGACAAGGAC-A-TTATCTGTCCC--AT----AATC----T--A--A----T---------CCTCAAGGTCNNCCTCATCCCACCCTTTTCAGTAT-TATAGGAGATCC------CTCGCCTATACTGATTCACTGAAATTCTCCTTCTTTCCAAGGATCATCNCATTATGGAATTCCCTTCCATGTGAGACTGTGTCTTTGGAGACAATCAACGAGTTCAAGTCTAAGTTCTAGACTTGANTTGGGTATGCTGTC-AATTATTTT--TG--TGACAGCTACCCCTTACACCTT---TTAT-A-A-----T-GT---TTTACTTTTTAT-------AGCGACTT-TGCATAGACCTACTTGTT----A-T-T-TTTGTG--CGCTTGATCTA--TGCAAGTTGCCACCACCCCACCTGCCGCGATGCCCAGCATTGACAGACA
Reference ( family-992 ) : AAGCGTTGGAGAAATC--AGAGCCACGTAGGGGAGATGCTGGAA--GACCTTTCTTGGCCAACCCTCCAACATCGTAGGGATATTAACAGTCTTGT-A-TTTTCTTAT--AAAATNCATCACGGTTTTGTCTCGATTGACAAGGAC-A-TTATCTGTCCC--AT----AATC----T--A--A----T---------CCTCAAGGTCNNCCTCATCCCACCCTTTTCAGTAT-TATAGGAGATCC------CTCGCCTATACTGATTCACTGAAATTCTCCTTCTTTCCAAGGATCATCNCATTATGGAATTCCCTTCCATGTGAGACTGTGTCTTTGGAGACAATCAACGAGTTCAAGTCTAAGTTCTAGACTTGANTTGGGTATGCTGTC-AATTATTTT--TG--TGACAGCTACCCCTTACACCTT---TTAT-A-A-----T-GT---TTTACTTTTTAT-------AGCGACTT-TGCATAGACCTACTTGTT----A-T-T-TTTNTG--CGCTTGATCTA--TGCAAGTTGCCACCACCCCACCTGCCGCGATGCCCAGCATTGACAGACA
gi|1 : GAGCCATGTAGGGGAGATGCTGGAA--GACATTTCTTGGCCAACACTCCAACATCATAGGGATATCAATATTCTTAT-C-TTTTTTAAT---AAATACATCACGGTATTGTCGCAGTTTACAAGGAC-ATTTACCTGTTCA--ATATCCAATC----T--A--AGCGCT---------CATCAATATCAACCTTATCTCAACCGTTTCAG----TATAGGAGATCCACCCCACTC-CCT-TACTGATTTACTGATAATCTCCTCTTTTACAAGATTCATCCCATTATTGAATT-CCTTCCATGCGAAACAGCGTCCTTGGAATTAATCAAAGAGTTCAAATCTCAGTTCAAGACTTGAATTGGTTAGACT-TCAAATTATTTT--TAACTGAAAGCTACACAGTACACCTT---ATAT-ATA-----TAGT---TTTATATTTTAA-------ATCAAGTT-TGCATAGAACCACAAGTT----ATT-T-TTTGTG--AGCTTGAT-TA--TGCAAGTGGTTACCATCCCACCTGCCGTGAAGCTCAACATTGA
gi|10 : gaaaatattgacaaaatagttattaagttatatatttataaaacacttaataggttaatgaaatgatacgttatatttataagcaccnnnnnnnnnngTAT-A---------GT---TTTACATTTCAT-------AGCAACTT-TGCATTGACTCACTTGTT----ACT-T-TTTGTT--AGCTTGAGCTA--TGCAAGTTGCCACTACCCAAACTGCTGTGATGCCCAACATTGAgcgtatgcagtattattgatagat
gi|11 : aGACTGTGCCATTGGAGACGATAAACGAGTTC------AAATTTTAGATTTGCTTTGGGCATGCTACC-AAC--TTTT--TG--TAACAACTACTCGTT-C-CTTT---TTGT-A-AATAGGT-GT---T---CTTTTTAT-------AGCAGCTgcatttccagtattgaccgatcgat
gi|12 : gtaag-GT---TTTA-TTTTTGT-------AGGGGCTT-TACATACAGCTATTTGCT----T-T-TGTTTCTA--TATTTGATCTA--GCCAAGTTG--ACAATCCCACCACCC---ATGCTCATCACTGA
gi|13 : ataCGCTGGAGAAATC--AG--TCACACAGGGGAGAAGCTGGGA--GACTTTTCTgcgcg
gi|13 : TTTCTT-C--AAAATTCATAACGGTTTTGTCTaagactctttcttcaaaattcataacggttttgtct
gi|14 : cgctggagaaatcagtcacacaggggagaagctgggagacttttctaagactcTTTTCTTCTTTCCAATGATCATCACAGCATGAAATTCCCTTCCATATTAGTCTGTGTCTTTG
gi|15 : TTTTCTTCTTTCCAATGATCATCACAGCATGAAATTCCCTTCCATATTAGTCTGTGTCTTTG
gi|16 : TTTTCTTCTTTCCAATGATCATCACAGCATGAAATTCCCTTCCATATTAGTCTGTGTCTTTG
gi|17 : TTTTCTTCTTTCCAATGATCATCACAGCATGAAATTCCCTTCCATATTAGTCTGTGTCTTT
gi|2 : AAGTGTTAG-GAAATA--GGAGCCATGTATGAGAGATGCTGGAA--GACCTTTTTAGACCAATCCTCCAACATTGTAGGGATATTAACATTCATGT-A-TTTTTTTAT--AAAATACATCACAGTTTTGTCTGAATTGACAAG-------TAGC-------------------------A--A----T---------CGTCAAGGTCAACCTCATCTTACCCTTTTCAGTATCTATAGGAGATCC------CTCGCCTGTACTGACTCACTGAAATTCTCTTTCTTTCCAAGGATCACCCCATTATGGAATACCCTTCCATGTGAGACTGTGTCTTTGGAGACCATCAACAAGTTCAAGTCTAAGTTCTAGACTTGAATTAGGTAGACTTTC-AATTATTTT--TAATTGACAGCTACCCATTACATCTTACATCAT-ACAT----T-GTAAATTTACATTTTAT-------AGCGACTT-TGCACCGACCTACTTTTT----A-T-T-TTTTTG-----TTGATTTAATTGCAAGTTGCCACCAGTTCACCTTCAGTG-TGTGCAGTACAGACAGACA
gi|3 : AAGTGTTGGAGAATTC--AGAGCCACATAGGCGAGATGCTAAAAATGACCTTTCTTGGCCAACCCTCCAACATCATAGGGATATTAACAGCCTT---------CTTATTCAAAATTCATT-CAGCTGTGTCTCTATTGACAAAGACCA-TTATCTCTCCC--------------------------------------TTCAATGTCTTCTTCATCTCACCCTTTTCAGTAT----AGGAGATCC------CTAGCCTATACTGCTTCTCTGAAAT-CTCCTTCTTTCTAAGGATCATCACATTGTGGAATTCCATCCCATATGAGACTGTGTCTCC----------------TTCAAGAC-----------CTTGACTTGGGTATGCTGTC-AA--ATTGT--AG--TAACAGCAACCTCTT--TCTTT---TTGT-A-AAT---C-GT---TTTATTTTTTGT-------AGCTGTTT-TGCATAGACCTACTTGTTCTAAA-T-T-TCTGTA--CACTTGATATA--TAGAAGTTGGCACCA--CCACCTTCCACGATGCTCAGTATTGAttagattagattaccggtagatgaaatgagatgagatgaacgtttttgtaacaatct
gi|4 : aaaaacaaaaaccacagcaataattcatgtttcgtaacgtgtttcagaacatcaacaaggtggcgctgtAAGCGTTGGAGAAATC--ATAGCCATGT-GGGGACATGCTAAAA--GACCTTATT-------------AACAACGTAGGGATATTAACAGTATTGTCA-TTTTCTT-T--AAAATTCATCAAAGTTTTATCTCGATTGACAAGGAC-AACTATCTGTCCCCAATCG--AATC----TCAACTA----T---------CCTAAAGGTCTTACTCAACCCACCCCTTTCAGTAT----------------------------ACTAATTCACTGAACGTTTCCATCTTTCAAAGGATCACTTCATTGTGTAATTCCCTT----GTGAGAATGTGTCCCTGGAGACACTTAACGAGT---A---TAAG------ACTTGGCATAGGTTTGCTGTC-ATTTA---T--TG--TAGCAACAACCCTTT-TACC-T---ACATAA-A-----T-GT---TT--CTTTTTGTTAATGCCAATGACTTGTATATATAATTCCGTGTT----A----------A--CGCTTAATCTG--CAGAAGTTGTCA-----CCACCTGCCGTATTGTCCAGgcgcgtatagtatcccgatat
gi|5 : gaaaaataaaaacgcattttaaattgtatattcaaagtattctgcaggaaatgaaataggtggtgttgtAAACGCTGGGGAAACCGTACAGTTACATAGGGGAGATACTGAAT--AACTTTTCTTAG--AACTCT----------AGGCTTATGAACAGT---------TTTCTT-T--AAAAT---TCACTTTTTTTTCTCAATT--------------ATCTTTCCCC-AT----ATTA----T--T--A----T---------C-TCAAGGTCTATCTCAACCAACCCTTTACAGTA--TATAGGAGATAC------CTTGC-------------CTGAACTACTCCTTTTTTTCAAAGATGATCCCATTtttttagcgtgagcagtataaatagata
gi|6 : ttaacatcttgctatcatggggcactcctatccaacaaataagctctaaagtcaataggtggaacttgtcttttgctcccaagtgcatggcctataagacctgagcatgaccccaggtagaatttgttttccatattctaaaaccacatgcccagtttaaaatactctggttagaaatggtgccttgaagaaggtggtgttgt--AAAATATATAACGGTTTTATCCCGAATGACAAGGAC-ACTTATCTGTTCT--AT----A-TC----T--A--A----TTCCTTTGATCCTCAAGGTCATCCTCATCCCACCATTTT---TAA-TATAGGAAATCC------CAATTCTATACCGATTCCCTGAAATTCTCATTCTTTACAAGTATCATCCCAT-------------------TGA-------TCTT-GGGGACAATTAACGA--------CT----TCTGGACTTGAACTGTATATGCTGTC-ATTTATTTT--TA--TGACAGCTACAACTTAC-CCTT---TGTT-A-A-----TCGT---TTTACTTCTTAA-------AGCGACTT-CGCATATACCTACTTCTT----A-T-T-TTTGTT--CGTTTAATCTA--TGCAAGTTGCCATCACCCCACCTACCGCGATGCCCGGCATTGA
gi|7 : GAGCCATGTAGGGGAGATGCTAGAG--GACCTTTCTTGGCCGACCATCCAACATCGTAGGGATATCAACAGTCTCGT-ATTTTTTTTAT--AAAATGCATCACGGTTTTGTCTCGATTGACAAGGACAA-TTATCTGTCCC--ATATACAATCCCAGC--G--A----T---------TCTCAAGGTCGACCTCATCCCACCCTTTTC---GT-CATAGGAGATCC------CTCACacgtgagcagtatcgata
gi|8 : taaagttccaatatgtttaacaatgtaaggcctaaaagacattagtaagaccccaggtagaatttgcttcccaaagttagagcccatatacccagtctgaaatataccggttagaaatggtgcagagaacagcggtctggtggtgttgtTCATGCCATCATTTTCAGTAT-T---GGAGATCC------ATTGCCCATAATGATTCACTGAAATTCTCCTTCTTTCCAAGGATCATCCCATTATGGAATTCCCTTCTGTGTGAGACTATATCCTTGGAGACTATCAAAAAGTTCAAGTCTAAGTTCTAGACTTGAAATGGGTAGACTGTC-AATTCTTTTTATA--TGACAGCTACCCCTAACACTTT---GTAT-A-T-----A-GT---TTTACATTTTAT-------AGCAACTT-TACATAGACCCATTTGTT----A-T-T-TTT-TGAAAGCTTGATCTA--TGCAAGTTGCATTCACGCCACCTGCC
gi|9 : ctttgatattatat--A--A----T---------CTTCAAGGTTTTCCTCAATCCATCCTTTTCAGTAT-----AGAGAAAC------CTTGTCAGTACTGGCTCACT--AATT---------------GA-------GTTAT---ATTC-----CGCGTGAGAC-GTGTCCTTGGAGATAATAAACGAGTTCAAATCTAAATTTTAGACGTGACTTGGGTTTGCTGTT-AA--ACTTT--TG--TAAC----ACCCCTTTCA--TT---TTGTAA-A-----TAGT---TTTAGTTTTTGT-------AATAGC-T-TGCATATGCCTAGTTTTT----A-TAT-TATGTG--TGCTTGGTCTA--TGCAAGTAGCCACCACCatgg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GAAAGGTCGATAGATAGATTGACTTTATATTTGAATAATC