lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 4444444444444 1 55 1 11 222222 22 2222222222222222222222222 3333333333333 000000000000000000000000000000000000000000000000000000000000000000 11 6666666666666666666666666666666 1 1 88888888888888888888888888 111111 2222222222 111 2222222222 222222222222 1111
lowQualScore : 5555555555555 7 55 3 7 88 000000 2 11 7 66 5555555555555555555555555 0000000000000 5 88 3 0 00 666666666666666666666666666666666666666666666666666666666666666666 333 0 0 44 44 11 1111111111111111111111111111111 3 3 0 6 2 2 00 44444444444444444444444444 44 222222 77 3 2 2222222222 3 333 3 2222222222 55 2 444444444444 6 8 4444
lowQualScore : ............. . .. . . .. ...... . .. . .. ......................... ............. . .. . . .. .................................................................. ... . . .. .. .. ............................... . . . . . . .. .......................... .. ...... .. . . .......... . ... . .......... .. . ............ . . ....
lowQualScore : 0000000000000 0 00 3 7 00 888888 5 77 0 11 2222222222222222222222222 8888888888888 3 99 3 3 77 444444444444444444444444444444444444444444444444444444444444444444 888 5 2 22 22 55 4444444444444444444444444444444 1 1 2 2 9 1 33 00000000000000000000000000 22 666666 33 1 9 1111111111 3 333 3 9999999999 55 2 111111111111 7 0 8888
consensus : AACACATACTA-GTAATTTGTCATGG-AC-ANATTN-ATAC--TGATCCTTCCCAG-CAAGTTTCAGTG--AAATNC----A----AC---TGTTGATTCAAGAGAAGAA--T---C-AC-GGACAAN-A-TTTTTAATTCCGAAAA--------TGCA-AAGGGCCACAANTCGACCCAGTCGAAA----ATCA--TTAAACCAGAACGCAAAAGG-GATATGTG--C--A--ACTAGACCTC------AA-----------------ACTG--ATCCTTTC-CAGCAAGTTTCGGCTAAATCCGACCAC-A------TA-A--TGTATGACGGAGGAGT--TCTCCGGA-CAAG--A-TT-TT----------AA-TTCCG-AAAATGCAAA-GGG---CC---GNAAC--TCAG-A--AG-----AAAT-AT-ATNCACGAATA
Reference ( gi|6 ) : AACA-ATATTAAGTATGTTGACATGTCAC-ATATTT-ATAC--TGAGCCTTCTCAC-CAAGTTTCATTG--AAATGC----A----AC---TGTTGGTTCAAGAGAAGAA--T---C-AT-GGGCAAA-A-TTTTTAATTTTGAAAT--------TGCA-ATGGGCCACAAGTCAACCCAGTCAAAA----AT-A--CTAAACCAGAACGTTAAAGA-GGTATATG--C--A--ACTAGACCTCA-----AA-----------------ACTT--ATCCTTGC-CAGCAAGTTTTGGCCACATCTGACCAC-A------TACA--TGTATGACAGGGGAGT--TCTTCAGG-CAAG--A-TT-TT----------AA-TTCTG-AAAATGCAAA-GGG---TT---GTAAC--TTAA-A--AG-----AAAT-AT-ATGCATAAATAGACGTCGTGC
gi|7 : AACACATACTA-GTAATTTGTCATGG-ACTAGATTTCATAC--TAGTCCTTTTCAGGCAAGTTTCATTG--ATATGT----G----AA---TGTT
gi|10 : AC-AAATTA-ATAA---GATCCTTCCCAG-CAAGTTTCAGTT--AAATCT----G----AC---CACAAATGCCAAAG--GAA--TTC-C-CC-AGACAAG-ATTTTTTTTTTTTTAAATACCAAGAATGCA-ATGGGCtaattccaaaaatgcagatgacaaaactatcaacaaactagaaagcaaaatgaatatgtgcaactacacctctgacttattctttccagtcaactttggtttaatcccacgacagatgtcggaagagttctctgaacaagattttgtgacagacggacagacagaaagcacaaaaatagtatgtctaccagagagggtgagac
gi|8 : at-ATATTC-ATACACTGATCATTCCAAG-CAAGTTTTGGCT--AAATCC----A----AC---AGCAGAT---ATTGAAGT---T---C-TTCGGGCAAT-A-TTTTTAATTCAGAAAA--------TGCA-AAGGGCAACAA------CCA-TC----------------AAACCAGAACA-CAAAGA---TATGCC--C--C--ACTTGGCATC------GC-----------------ATTG--ATCTTTCC-CATGATGTTTTAGCAAAGTCTGGCCAC-A------T--A--TGT----CAGGGaatcagaacacaaaagggatatgtaattacacaagtaattggtaaactttctagttttca
gi|5 : aatatcatcaaacaggaaaacaaaagggAC--TGATCCTTCCTAG-CAAGTTT--TTGCTAAATGCGTTCA----AA---TATT--TTTAGGACATC----T---C-A--GGACAAT-A-TTTTTAATTCCAAAAA--------TACA-AAGGGGCAC-AGT--ACCT--TCAAAGTTTTAT-A--TT----CTGAATACAAAATG-GATATGTG--C--A--ACTAAATCT-G-----AC-----------------ACTT--ATTGTTTA-AAGTGCGATTTTGCTAAATTTGAC-----------TTCA--GGTAT--CAGACCAGTAATCT--GGA-CAAGTTT-TT-TT----------CA-TCCC--AAAAT-CAAA-AGG---tcaagattttgtgac
gi|11 : tcatcaaacatttacaaaaaaggaacatgtacaactagacctccCCTTCTCAG-TAAGTGTCATTG--AAATGC----A----GC---TGTTGATTGAAAAGAAGAAACT---C-A---GACACT-A-T-----ATTCCGGAAA--------TGCA-AAGGTTC----GT-AATTTAGTCGAAA----AT-A--ATCAGTCCGAATACAAAAGG-GATAGGTA--C--A--Aaggttactctgtcaaaaaccattgactgggaatataaatggggtatgacaactag
gi|3 : cgttgccacatgcattattggatgccatatgggtTCGCAG-CAAGTTTCGGTT--AAAT-C----AGATTAC---AGTTG--T---GGGAGGAG--TTCTC--T-GGACAAA-T-TGTTAAATTCCAAAAA--------TACA-AAGGGTC------TGACTCAGTCAAAA----TTTA--TCAAA--AGTACATAAAAGA-GAAATGAA--C--A--ACTCCACATCA-----AA------------------CTG--ATTCTTTTTCAGCAAGTTTCAGCTAAATCTAACTGA-A-------------G-ATGATGGTGGGGT--TCTTTGGA-CAAG--A-TT-TT----------
gi|18 : aagaagcacagccatgatgtttaattctgaaaatctcaaaaaggaaaacaagaggggtatatgcataacaagacccgagtgaAAGCTTCAGTG--AAATGC----A----ACACTTGT-GGCTCAAGAGAAGAA--G---C-GT-GGATAAG-A-TTTgcaacagatggatagagagaaagcacataaacaatatgtgttccagagagtgtgatacataa
gi|1 : AATTTTAGTG--AATTCC----A----AC---TCATGATTCAAAAGAAGAA--A---C-AT-GGCCAAG-A-TTCTTTATTTTAAACT--------AGAA-AAGGGTCATAACTT--TCC---CGAAA----ATCA--TTGTACTGGAAC---ACATATGATACAAG--CATA--ACTAAACCTC------AA-----------------ACTG--ATCCTTTC-CCCTAAGTTTTGACTAAATTTGACCAC---------AGA--TGT-TGA---AGGAGT--TTTTTGCA-CAAG--C-TT-TT----------TA-TTTCC-AAAATGCAAT-GG
gi|13 : caggcaaaatgtttcattcagaaaattaacacagcctccactcttggccaaaaatcaaagaacaaaaatgcaaaatgtacatgcaaaagggagctttaggcttatcattccaagtattttTTCAGCG--AAATCC----A----AC---TGTT----CAAGAGAAGAA--A---T-AG-GGACAAATA-TCTTTAATTTTGAAAA--------TGCA-AATGGCCACAACTCGATC--------A----AT-A--TAGAAACAGAGCGC--AAGA-AGGATATG--C--ACGACACGACCTC------AA-----------------ACTG--ATCCaaatatttcaaaatcaaggaaacagatt
gi|2 : tttagAAGTA--T---CTAC-AGACAAT-A-TTTTTAATTCTGAAA-----------------AG--ACAAATT----CTGTAAAAT----AT-AAGC-AAACCTGCATACAAAAGT-GGTATGTG--C--A--ACTAGCCATC-------------------------ACTCCAACCCTTTA-CAGTAAGTTGCGGCAAAATCCAA-CAA-A------T-----TATATGA------------------A-CAAT--ATTT-TT----------AA-TTCCG-TAATTGCAAA-GAG---CC---ATAAC--TCAT-C--AA-----AAAT-attcct
gi|2 : tctccctagtgagattttaaattccaaaaatgcaaagtgctgcaagtcaaaaatcatcacactaaaataaaaataggacatgcagaactatacgtcacacagatcctttccagc-AT-GAACAAT-A-TTTTTAATTCCGTAAT--------TGCA-AAGAGCCATAACTCA------TCAAAA----ATCA--TCAAACCATAACG--GAAAA-GGGATATG--C--AT-ACTAGACCTC------TC-----------------GCTG--ATCCTTTC-Ccatcaaaccataacggaaaagggatatgcatactagacctctcgctgatcctttcct
gi|4 : tctccctagtgagattttaaattccaaaaatgcaaagtgctgcaagtcaaaaatcatcacactaaaataaaaataggacatgcagaactatacgtcacacagatcctttccagcaagtatctacagacaatatttttaattctgaaaagacaaattctgtaaaatataagcaaacctgcatacaaaagtggtatgtgcaactagccatcactccaaccctttacagtaagttgcggcaaaatccaacaaattatCAGA-A-TTTTTAATTTTGAAAA--------TACA-AAGGG------GCCAACTCAGTCTAAG----ATCA--TTAAACCAG------------GATATGTG--C--A--ACTAGACCTCA-----CA-----------------G-TG--ATCTTTTC-CAGCAA-------CCACA----A---------------A--TGT----CAAAGGAGT--TATCTAGC-CAAGA-A-TT-TT----------AA-TTCCA-TAAACGCAAATTGG---CT---GAAAC--TTAGTA--AA-----AAATCATCAAACACAAATt
gi|7 : aA-A-TGTTTAATTCCAAAAA--------TGCAGATG----ACAA---AACT--ATCAA-------------CAAACTAGAAAGCAAAATG-AATATGTG--C--A--ACTACACCTC------TG-----------------ACTT--ATTCTTTC-CAGTCAACTTTGGTTTAATC---CCACGA------CAGA--TGT----CGGAAGAGT--TCTCTGAA-CAAG--A-TT-TT----------tggatatgggcaactaaacctcacatttatcgtttccaccaagttcatccgttatccagataaacttttgttacagacagacagacagcagacagacagattgacaaacatacagacaataaaagcacaaaaacaatatgtctccctgagaggggaagacata
gi|12 : aacacatactagtaatttgtcatggactagatttcatactagtccttttcaggcaagtttcattgatatgtgAAA----ATCA--TTCAACTAGAATGC-AAAGG-GATATGGG--C--A--ACTAGAGCTCACACTGAACCTACCCAGCAAGTTTCACTA--ATCCTTTT-CAGCAATTTTCGGCTAAATCTAACCAC-AGATTTTTACAATTTTGTGACAGgtgacagacggacagacagaaagcacaaaaatagtatgtctaccagagagggtgagac
gi|3 : AGAGG-GGTATATG--C--ATAACAAGACC-CG-----AG-------------------TG--ATC---GC--AGCAAGTTTCGGTTAAATCAGATTAC-AG-----T-----TGTGGGA----GGAGT--TCTCTGGA-CAA---A-TTGTT----------AAATTCCA-AAAATACAAA-GGG---TC----TGAC--TCAG-T--CA-----AAAT-TT-AT-CAAAAGTAactgacgaaaagcacaaaaa
gi|5 : aagaagcacagccatgatgtttaattctgaaaatctcaaaaaggaaaacaAAAAA-GGAACATGTAC--A--ACTAGACCTCC-----A-------------------CTG--ATCCTTCC-TAGCAAGTTTTTGCTAAATGCGTTCAA-A------TATT--TTTAGGACA---------TCT-CAGGACAAT--A-TT-TTT---------AA-TTCCA-AAAATACAAA-GGG---GCACAGTACC--TTCA-A--AG-----TTTT-AT-ATTC-TGAATAcataaaagagaaatgaacaactccacatcaaactgattctttttcagcaagtttcagctaaatctaactgaagatgatggtggggttctttggacaagattttgcaacagatggatagagagaaagcacataaacaatatgtgttccagagagtgtgatacataa
gi|8 : tcatcaaacatttaca-----------------ACTG--ATCATTCC-AAGCAAGTTTTGGCTAAATCCAACAGC-A------GATA--T---TGA------AGT--TCTTCGGG-CAAT--A-TT-TTT---------AA-TTCAG-AAAATGCAAA-GGG---CA---ACAACCATCAA-ACCAGAACACAAAG-AT-ATGCcaaaatggatatgtgcaactaaatctgacacttattgtttaaagtgcgattttgctaaatttgacttcaggtatcagaccagtaatctggacaagtttttttcatcccaaaatcaaaaggaggttactctgtcaaaaaccattgactgggaatataaatggggtatgacaactag
gi|10 : aatatcatcaaacaggaaaacaaaagggatattcatac--ATCCTTCC-CAGCAAGTTTCAGTTAAATCTGACCAC-A-------A-------ATGCCAAAGGAAT--TCCCCAGA-CAAG--A-TT-TTTTTTTTTTTAAA-TACCA-AGAATGCAAT-GGGCAATC---AGAAC--ACAA-A--AG-----GGAT-AT-GTcccacttggcatcgcattgatctttcccatgatgttttagcaaagtctggccacatatgtcagggtcaagattttgtgac
gi|14 : atacaaattaataagATCTGACCAC-A------GA----TGT----CGGAAGAGT--TCTACGGA-CAAG--A-TT-TT----------AA-TTCCA-ACAATTTAAA-GAG---CT---GCACC--TCAaattacacaagtaattggtaaactttctagttttca
gi|9 : agGGAGGGT--TCTCCAGA-CATG--A-TT-TTTC--------AA-TTTCA-AAAATGCAAA-GGG---CT---GTAAG--TCAG-A--CA-----AAAgtcttgcaaaatgtttaaaag
gi|19 : tatcAGT--TGTCCAGA-CAAG--A-TT-TT----------AA-GTTTACAAAATGCAAA-GGG---TC---GAAAC--acgattgtaccagaatgaaaaaggataatcacagccagaactcacagtttcagccaaatcttaaaattttttttatgacagatgcagatagacagaaagcacaaaatcaatatgcctcacagatagggaagacacat
gi|13 : T-TT----------AA-TTTTG-AAAATGCAAA-TGG---CC---ACAAC--T
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): CATATGTAAGAGAAGATCTCCGGGCAAGATTTTGTCAGACTGAAATCTCTAAAACAATATGTCCCTGGGAAGGGGAGACATA
Unaligned ( gi|16 ): GGATAAGATTTTGTGACAGATGGCCAGACAGTTAGACAGAAAGCACAAAAACAATGTTGAGAGAGGTTACATAATT
Unaligned ( gi|17 ): GATGGACTTAAGGACATAATGGACGGACAGAAGAAAAACACAAAAATAATATTTCTTCCTGAGAGGGGGG
Unaligned ( gi|20 ): CATATGTTGAGGAGTTACCTAGACAAGATTTGTGACAGACAGACAGAC
Unaligned ( gi|21 ): ACAGATGTCGGAGGAGTTGCCTAACAAAATTTTGAGACAGAT
Alignments
lowQualScore : 1 2 22 1 33333333333333333333333333333333333333333333 7777777777777777777777 5555555555555 1111111111 1 111111
lowQualScore : 5 0 77 4 22 3 1 77 77 0 4 8888 5 5 7777 44444444444444444444444444444444444444444444 888 4 2 2 2 3333333333333333333333 2 0 2 55 333 333 3 2 55 444 2 33 2 99 2 4444444444444 0 7777 2 9999999999 55 0 3 777 11 66 66 88 6 999999 1 3 2
lowQualScore : . . .. . .. . . .. .. . . .... . . .... ............................................ ... . . . . ...................... . . . .. ... ... . . .. ... . .. . .. . ............. . .... . .......... .. . . ... .. .. .. .. . ...... . . .
lowQualScore : 0 0 00 0 55 3 0 77 99 9 4 5555 1 8 7777 11111111111111111111111111111111111111111111 444 7 5 4 5 4444444444444444444444 2 3 1 11 999 999 6 0 33 999 5 99 9 00 5 8888888888888 4 1111 9 3333333333 00 1 6 888 99 11 11 44 7 000000 0 2 0
consensus : AACACATACTAAGTANNTTGNCATGNCAC-ATATTT-ATAC--TGATCCTTCCCA-GCA----AGTTTCGGCGAAATNC----A----AC---TGTTGA-TTCAAG----AGA--AG-AA-TC--AC-GGACAA-N-ATTTTT-AATTCCGAAAAT-GCAAAG-GGCCGCAANTC-ACCCAGTC--A-AAAATCATCA-AACCAGA---ACGCAAAAGGGATATGCGCA--ACTAGACCTC-ACACTGA-TCCTTTCCA--G-CAAGTTTCGGCTAAATCCGACCACATG-ATGTATG-CGGAGGAGTTCTCCGGACAAG--A-TT-TT----------AA--TTCCGAAAATGCAAA-GGGC---CGNA--AC--TCAG-AAGAAAT-AT-A----TACACAAATA
Reference ( family-333 ) : AACACATACTA-GTAATTTGTCATGG-AC-ANATTN-ATAC--TGATCCTTCCCA-GCA----AGTTTCAGTGAAATNC----A----AC---TGTTGA-TTCAAG----AGA--AG-AA-TC--AC-GGACAA-N-ATTTTT-AATTCCGAAAAT-GCAAAG-GGCCACAANTCGACCCAGTC--G-AAAATCATTA-AACCAGA---ACGCAAAAGGGATATGTGCA--ACTAGACCTC-AAACTGA-TCCTTTCCA--G-CAAGTTTCGGCTAAATCCGACCACATA-ATGTATGACGGAGGAGTTCTCCGGACAAG--A-TT-TT----------AA--TTCCGAAAATGCAAA-GGGC---CGNA--AC--TCAG-AAGAAAT-AT-A----TNCACGAATA
gi|1 : TTT-AGGC--TTATCATTCCAA-GTATTTTAATTTTAGTGAATTCC----A----AC---TCATGA-TTCAAA----AGA--AG-AA-AC--AT-GGCCAA-G-ATTCTT-TATTTT-AAACTAGAAAAG-GGTCATAACTT--TCC---C--G-AAAATCATTG-TACTGGA---ACACATATGATACAAGCATA--ACTAAACCTC-AAACTGA-TCCTTTCCC--C-TAAGTTTTGACTAAATTTGACCACA-G-ATGT-TGA---AGGAGTTTTTTGCACAAG--C-TT-TT----------TA--TTTCCAAAATGCAAT-GG
gi|10 : caggcaaaatgtttcattcagaaaattaacacagcctccactcttggccaaaaatcaaagaacaaaaatgcaaaatgtacatgcaaaagggagcGA-TCCTTCCCA--G-CAAGTTTCAGTTAAATCTGACCACA-A-ATGC----CAAAGGAATTCCCCAGACAAG--A-TT-TTTTTTTTTTTAAA--TACCAAGAATGCAAT-GGGCAATCAGA--AC--ACAA-AAGGGAT-AT-GTAATTACACAAGTAaaatatttcaaaatcaaggaaacagatt
gi|11 : atacaaattaataa-ATAT--GGGTCCTTCTCA-GTA----AGTGTCATTGAAATGC----A----GC---TGTTGA-TTGAAA----AGA--AG-AA-AC--TC-AGACAC-T-AT------ATTCCGGAAAT-GCAAAG-GTTCGTAATT-----TAGTC--G-AAAATAATCA-GTCC-GA---ATACAAAAGGGATAGGTACA--Aattggtaaactttctagttttca
gi|12 : cgttgccacatgcattattggatgcc-AAAATCATTC-AACTAGA---ATGCAAA-GGGATATGGGCA--ACTAGAGCTC-ACACTGA-ACCTACCCA--G-CAAGTTTC-ACT-AATCC
gi|13 : TTCAGCGAAATCC----A----AC---TGTT-----CAAG----AGA--AG-AA-AT--AG-GGACAA-ATATCTTT-AATTTTGAAAAT-GCAAAT-GGCCACAACTCGATC-----------AAT-ATAG-AAACAGA---GCGCAAGAAGGATATGCACG--ACACGACCTC-AAACTGA-TCCATTCCttttcagcaattttcggctaaatctaaccacagatttttacaattttgtgacagactgacgaaaagcacaaaaa
gi|14 : tttagAGATCTGACCACA-G-ATGT----CGGAAGAGTTCTACGGACAAG--A-TT-TT----------AA--TTCCAACAATTTAAA-GAGC---TGCA--CC--TCAG-t
gi|14 : GA--AG-AG-TTCTAC-GGACAA-G-ATTTT--AATTCCAACAAT-TTAAAG-AGCTGCA---C--CTCAGTCTTGCAAAATGTTTA-AAtcttgcaaaatgtttaaaag
gi|15 : agatctgaccacagatgtcgCATA--TGTA----AGAGAAGATCTCCGGGCAAG--A-TT-TT----------ag
gi|18 : A----AGCTTCAGTGAAATGC----A----ACACTTGT-GG-CTCAAG----AGA--AG-AA-GC--GT-GGATAA-G-ATTTgtcagactgaaatctctaaaacaatatgtccctgggaaggggagacata
gi|19 : AGTTGTCCAGACAAG--A-TT-TT----------AAGTTTAC-AAAATGCAAA-GGGT---CGAA--AC--
gi|2 : A-G-ATTTTA-AATTCCAAAAAT-GCAAAG-TGCTGCAA---------GTC--A-AAAATCATCA-CACTAAA---ATAAAAATAGGACATGCAGA--ACTATACGTC-ACACAGA-TCCTTTCCA--G-CAAGTATC
gi|2 : tctccctagtgA--AG-TA-TCT-AC-AGACAA-T-ATTTTT-AATTCTGAAAA----------G--ACAAATT----CTGTA--A-AATATAAGCA-AACCTGC---ATACAAAAGTGGTATGTGCA--ACTAGCCATC-ACTCCAA-CCCTTTACA--G-TAAGTTGCGGCAAAATCCAA-CAAAT---TATATGA----------------ACAAT--ATTT-TT----------AA--TTCCGTAATTGCAAA-GAGC---CATA--AC--TCAT-CAAAAAT-tacagacaatatttttaattctgaaaagacaaattctgtaaaatataagcaaacctgcatacaaaagtggtatgtgcaactagccatcactccaaccctttacagtaagttgcggcaaaatccaacaaattatatgaacaatatttttaattccgtaattgcaaagagccataactcatcaaaaatcatcaaaccataacggaaaagggatatgcatactagacctctcgctgatcctttcct
gi|2 : tctccctagtgagattttaaattccaaaaatgcaaagtgctgcaagtcaaaaatcatcacactaaaataaaaataggacatgcagaactatacgtcacacagatcctttccagcACCCTTTACA-GTA----AGTTGCGGCAAAATCC----A----AC---AA---A-TT-----------------A-T---AT-GAACAA-T-ATTTTT-AATTCCGTAATT-GCAAAG-AGCCATAACTCA------TC--A-AAAATCATCA-AACCATA---ACGGAAAAGGGATA--TGCAT-ACTAGACCTC-TCGCTGA-TCCTTTCCcatcaaaccataacggaaaagggatatgcatactagacctctcgctgatcctttcct
gi|3 : tctccctagtgagattttaaattccaaaaatgcaaagtgctgcaagtcaaaaatcatcacactaaaataaaaataggacatgcagaactatacgtcacacagatcctttccagcaagtatctacagacaatatttttaattctgaaaagacaaattctgtaaaatataagcaaacctgcatacaaaagtggtatgtgcaactagccatcactccaA--AG-AA-GC--AC-AGCCAT-G-ATGTTT-AATTCTGAAAAT-t
gi|3 : --G-AAAATC-TCA-AAAAGGA---AAACAAGAGGGGTATATGCATAACAAGACC-C-GAG-TGA-TCG----CA--G-CAAGTTTCGGTTAAATCAGATTACA-----GT-TGTGGGAGGAGTTCTCTGGACAA---A-TTGTTA---------AA--TTCCAAAAATACAAA-GGGT---C-TG--AC--TCAG-TCAAAAT-TT-A----Tctcaaaaaggaaaacaagaggggtatatgcataacaagacccgagtgatcgcagcaagtttcggttaaatcagattacagttgtgggaggagttctctggacaaattgttaaattccaaaaatacaaagggtctgactcagtcaaaatttatcaaaagtacataaaagagaaatgaacaactccacatcaaactgattctttttcagcaagtttcagctaaatctaactgaagatgatggtggggttctttggacaagattttgcaacagatggatagagagaaagcacataaacaatatgtgttccagagagtgtgatacataa
gi|3 : aagaagcacagccatgatgtttaattctTCGCA-GCA----AGTTTCGGTTAAAT-C----AGATTAC---AGTTG--T----G----GGA--GG-AGTTC--TCTGGACAA---ATTGTTAAATTCCAAAAAT-ACAAAG-GGTC------TGACTCAGTC--A-AAATTTATCA-AA--AGT---ACATAAAAGAGAAATGAACA--ACTCCACATC-AAACTGATTCTTTTTCA--G-CAAGTTTCAGCTAAATCTAAC----TG-AAG-ATGATGGTGGGGTTCTTTGGACAAG--A-TT-TT----------caaaagtacataaaagagaaatgaacaactccacatcaaactgattctttttcagcaagtttcagctaaatctaactgaagatgatggtggggttctttggacaagattttgcaacagatggatagagagaaagcacataaacaatatgtgttccagagagtgtgatacataa
gi|4 : aagaagcacagccatgatgtttaattctgaaaatctcaaaaaggaaaacaagaggggtatatgcataacaagacccgagtgaACAG-A-ATTTTT-AATTTTGAAAAT-ACAAAG-GGGC------CAACTCAGTC--T-AAGATCATTA-AACCAG--------------GATATGTGCA--ACTAGACCTC-ACAGTGA-TCTTTTCCA--G-CA-----------------ACCACA-A-ATGT----CAAAGGAGTTATCTAGCCAAGA-A-TT-TT----------AA--TTCCATAAACGCAAATTGGC---TGAA--AC--TTAGTAAAAAATCATCA----AACACAAATgcaacagatggatagagagaaagcacataaacaatatgtgttccagagagtgtgatacataa
gi|4 : TC-ACAG--TGATCTTTTCCA-GCA----A---CCA--------C----A----AA---TGT------CAAA----GGA--GT-TA-TC---T-AGCCAA-G-AATTTT-AATTCCATAAAC-GCAAATTGGCTGAAACTT-----AGTA--A-AAAATCATCA-AAC---------ACAAATTGGATATGGGCA--ACTAAACCTC-ACATTTA-TCGTTTCCA--C-CAAGTTtggatatgggcaactaaacctcacatttatcgtttccaccaagttcatccgttatccagataaacttttgttacagacagacagacagcagacagacagattgacaaacatacagacaataaaagcacaaaaacaatatgtctccctgagaggggaagacata
gi|5 : acagaatttttaattttgaaaatacaaaggggccaactcagtctaagatcattaaaccaggatatgtgcaactagaccTCATCA-AAC---ATTTACAAAAAAGGAACATGTACA--ACTAGACCTC-CA-CTGA-TCCTTCCTA--G-CAAGTTTTTGCTAAATGCGTTCAAAT--ATTTTT-----AGGACATCTCAGGACAAT--ATTT-TT----------AA--TTCCAAAAATACAAA-GGGG---CACAGTACCTTCA--AAGTTTT-AT-A----TTC-TGAATAcatccgttatccagataaacttttgttacagacagacagacagcagacagacagattgacaaacatacagacaataaaagcacaaaaacaatatgtctccctgagaggggaagacata
gi|5 : AC--TGATCCTTCCTA-GCA----AGTTTTTGCTAAATGCGTTCA----AA---TATT---TTTAGG----ACA--------TC--TCAGGACAA-T-ATTTTT-AATTCCAAAAAT-ACAAAG-GGGCACAGT---ACCT--TC----AAAGTT-TTATATTCTGA---ATACAAAATGGATATGTGCA--ACTAAATCTG-ACACTTA-TTGTTTAAAGTG-CGATTTT--GCTAAATTTGACT---TC-AGGTAT--CAGACCAGTAATCTGGACAAGTTT-TT-TT----------CA--TCCC-AAAAT-CAAA-AGGcaaaatggatatgtgcaactaaatctgacacttattgtttaaagtgcgattttgctaaatttgacttcaggtatcagaccagtaatctggacaagtttttttcatcccaaaatcaaaaggaggttactctgtcaaaaaccattgactgggaatataaatggggtatgacaactag
gi|5 : tcatcaaacatttacaaaaaaggaacatgtacaactagacctccTTGACTTCAGGTATCAGACCAGTAA-TC---T-GGACAAGT-TTTTTT-CATCCC-AAAAT--CAAAA-GG----AGGTT-ACTCTGTC--A-AAAACCATTG-ACTGGGA---ATATAAATGGGGTATG-ACA--ACTAGaggttactctgtcaaaaaccattgactgggaatataaatggggtatgacaactag
gi|6 : tcatcaaacatttacaaaaaaggaacatgtacaactagacctccactgatccttcctagcaagtttttgctaaatgcgttcaaatatttttaggacatctcaggacaatatttttaattccaaaaatacaaaggggcacagtaccttcaaagttttatattctgaatacaaaatggatatgtgcaactaaatctgacacttattgtttaaagtgcgattttgctaaatAACA-ATATTAAGTATGTTGACATGTCAC-ATATTT-ATAC--TGAGCCTTCTCA-CCA----AGTTTCATTGAAATGC----A----AC---TGTTGG-TTCAAG----AGA--AG-AA-TC--AT-GGGCAA-A-ATTTTT-AATTTTGAAATT-GCAATG-GGCCACAAGTCAACCCAGTC--A-AAAAT-ACTA-AACCAGA---ACGTTAAAGAGGTATATGCA--ACTAGACCTCAAAACTTA-TCCTTGCCA--G-CAAGTTTTGGCCACATCTGACCACATACATGTATGACAGGGGAGTTCTTCAGGCAAG--A-TT-TT----------AA--TTCTGAAAATGCAAA-GGGT---TGTA--AC--TTAA-AAGAAAT-AT-A----TGCATAAATA
gi|7 : AACACATACTA-GTAATTTGTCATGG-ACTAGATTTCATAC--TAGTCCTTTTCAGGCA----------AGT----TTC----A-----------TTGA-T--ATG----TGA--A----------------------TGTTT-AATTCCAAAAAT-GCAGAT-G---ACAAA---ACT------------ATCAACA-AACTAGA---AAGCAAAATGAATATGTGCA--ACTACACCTC-TGACTTA-TTCTTTCCA--GTCAACTTT-GGTTTAATCCCACGACA-G-ATGT----CGGAAGAGTTCTCTGAACAAG--A-TT-TT----------gacgtcgtgc
gi|8 : -ATATTC-ATACACTGATCATTCCAA-GCA----AGTTTTGGCTAAATCC----A----AC---AGCAGA-T---AT----TGA--AG-TT-CT--TC-GGGCAA-T-ATTTTT-AATTCAGAAAAT-GCAAAG-GGCAACAAC--------------------CATCA-AACCAGA---ACACAAA---GATATGCCCC--ACTTGGCATC-GCATTGA-TCTTTCCCA--T-GATGTTTTAGCAAAGTCTGGCCACAT--ATGTgtgacagacggacagacagaaagcacaaaaatagtatgtctaccagagagggtgagac
gi|9 : aatatcatcaaacaggaaaacaaaagggCGGAGG-GTTCTCCAGACATG--A-TT-TTTC--------AA--TTTCAAAAATGCAAA-GGGC---TGTA--AG--TCAG-ACAAAAcagggtcaagattttgtgac
gi|9 : tatC-AGACAT-G-ATTTTTCAATTTCAAAAAT-GCAAAG-GGCTGTAAGT-----CAGAC--A-AAAACGATTG-TACCAGA---ATG-AAAAAGGATAATCACA--GCCAGAACTC-Aacgattgtaccagaatgaaaaaggataatcacagccagaactcacagtttcagccaaatcttaaaattttttttatgacagatgcagatagacagaaagcacaaaatcaatatgcctcacagatagggaagacacat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GGATAAGATTTTGTGACAGATGGCCAGACAGTTAGACAGAAAGCACAAAAACAATGTTGAGAGAGGTTACATAATT
Unaligned ( gi|17 ): GATGGACTTAAGGACATAATGGACGGACAGAAGAAAAACACAAAAATAATATTTCTTCCTGAGAGGGGGG
Unaligned ( gi|20 ): CATATGTTGAGGAGTTACCTAGACAAGATTTGTGACAGACAGACAGAC
Unaligned ( gi|21 ): ACAGATGTCGGAGGAGTTGCCTAACAAAATTTTGAGACAGAT
Alignments
lowQualScore : 1 1 11 1 3333333333333333333333333333333333333 7777777777777777 555555555555 1111111111 1 33333333
lowQualScore : 5 5 22 1 66 3 8 66 1 7777 0 0 3 5 7777 7777 1111111111111111111111111111111111111 66 7 1 2 22 3333333333333333 33 0 2 55 333 333 33 22 33 222 2 33 2 5555 99 1 777777777777 33 66 5 5 8888888888 44 2 3 3 777 11 5 0 8 00000000 0
lowQualScore : . . .. . .. . . .. . .... . . . . .... .... ..................................... .. . . . .. ................ .. . . .. ... ... .. .. .. ... . .. . .... .. . ............ .. .. . . .......... .. . . . ... .. . . . ........ .
lowQualScore : 0 5 00 0 00 3 0 99 4 7777 5 8 1 4 1111 1111 4444444444444444444444444444444444444 22 1 5 4 99 2222222222222222 11 9 1 11 777 000 33 99 11 888 4 77 7 7777 22 6 444444444444 55 33 3 3 0000000000 66 6 3 3 888 99 7 7 0 55555555 2
consensus : AACACATACTAAGTANNTTGNCATGNCAC-ATATTT-ATAC--TGATCCTTCCCAGCA----AGTTTCGGCGAAATCC----A----AC---TGTTGA-TTCAAG----AGA--AG-AA-NC-NC-GGACAAG-ATTTTT-AATTCCGAAAAT-GCAAAG-GGCCGCAACTC-A--C-GTCAAAA--ATCATCG-AACCAGA---ACGCAAAAGGG--ATATGCGCAACTAGACCTC-ACACTGA-TCCTTTCCA--G-CA----AGTTTCGGCTAAATCCGACCACATG-ATGTAT--CGGAGGAGTTCTC-CGGACAAG--A-TT-TT----------AA--TTCCGAAAAT-GCAAA-GGGC---CGTAACTCAG-AAAAAAT-AT-A----TACACAAGTA
Reference ( family-333 ) : AACACATACTAAGTANNTTGNCATGNCAC-ATATTT-ATAC--TGATCCTTCCCAGCA----AGTTTCGGCGAAATNC----A----AC---TGTTGA-TTCAAG----AGA--AG-AA-TC-AC-GGACAAN-ATTTTT-AATTCCGAAAAT-GCAAAG-GGCCGCAANTC-ACCCAGTCAAAA--ATCATCA-AACCAGA---ACGCAAAAGGG--ATATGCGCAACTAGACCTC-ACACTGA-TCCTTTCCA--G-CA----AGTTTCGGCTAAATCCGACCACATG-ATGTATG-CGGAGGAGTTCTC-CGGACAAG--A-TT-TT----------AA--TTCCGAAAAT-GCAAA-GGGC---CGNAACTCAG-AAGAAAT-AT-A----TACACAAATA
gi|1 : C-AGGCAAA-ATGTTT-CATTCAGAAAAT-TAACAC-AGCCTCCACTC---TTGGCCAAAA--ATCAAAG-AACAAAA---ATGCAAAATGT--ACATGCAAAAGGGAGCTTT-AGGCTTA-TCATTCCAA--G-TATTTTAATTTTAGTGAATTCCAACT-CATG-ATTCAAA-AGAAGAAA----CATGGCCAAG--A-TTCTT----------TA--TTTT-AAACTAGAAAA-GGGT---CATAACT
gi|1 : TTT-AGGC--TTATCATTCCAAGTATTTTAATTTTAGTGAATTCC----A----AC---TCATGA-TTCAAA----AGA--AG-AA-AC-AT-GGCCAAG-ATTCTT-TATTTT-AAACTAGAAAAG-GGTCATAACTT-TCCCG----AAA--ATCATTG-TACTGGA---ACACATATGAT--ACAAGCATAACTAAACCTC-AAACTGA-TCCTTTCCC--C-TA----AGTTTTGACTAAATTTGACCACA-G-ATGT----TGAAGGAGTTTTT-TGCACAAG--C-TT-TT----------TA--TTTCCAAAAT-GCAAT-GGttcccgaaaatcattgtactggaacacatatgatacaagcataactaaacctcaaactgatcctttcccctaagttttgactaaatttgaccacagatgttgaaggagttttttgcacaagctttttatttccaaaatgcaatggaaatatttcaaaatcaaggaaacagatt
gi|10 : caggcaaaatgtttcattcagaaaattaacacagcctccactcttggccaaaaatcaaagaacaaaaatgcaaaatgtacatgcaaaagggagcGA-TCCTTCCCA--G-CA----AGTTTCAGTTAAATCTGACCACA-A-ATGC----CAAAGGAATTCCC-CAGACAAG--A-TT-TTTTTTTTTTTAAA--TACCAAGAAT-GCAAT-GGGCAATCAGAACACAA-AAGGGAT-AT-GTAATTACACAAGTAaaatatttcaaaatcaaggaaacagatt
gi|11 : atacaaattaataa-ATAT--GGGTCCTTCTCAGTA----AGTGTCATTGAAATGC----A----GC---TGTTGA-TTGAAA----AGA--AG-AA-AC-TC-AGACACT-AT------ATTCCGGAAAT-GCAAAG-GTTCGTAATT-----TAGTCGAAA--ATAATCA-GTCC-GA---ATACAAAAGGG--ATAGGTACAAattggtaaactttctagttttca
gi|12 : cgttgccacatgcattattggatgccAAA--ATCATTC-AACTAGA---ATGCAAA-GGG--ATATGGGCAACTAGAGCTC-ACACTGA-ACCTACCCA--G-CA----AGTTTC-ACT-AATCC
gi|12 : AC--TAATCCTTTTCAGCA----ATTTTCGGCTAAATCT----A----AC---CACAGA-TTttttcagcaattttcggctaaatctaaccacagatttttacaattttgtgacagactgacgaaaagcacaaaaa
gi|13 : aaaatcattcaactagaatgcaaagggatatgggcaactagagctcacactgaacctacccagcaagtttcTTCAGCGAAATCC----A----AC---TGTT-----CAAG----AGA--AG-AA-AT-AG-GGACAAATATCTTT-AATTTTGAAAAT-GCAAAT-GGCCACAACTC-G----ATCAA------TATAG-AAACAGA---GCGCAAGAAGG--ATATGCACGACACGACCTC-AAACTGA-TCCATTCCtttacaattttgtgacagactgacgaaaagcacaaaaa
gi|14 : tttagAGATCTGACCACA-G-ATGT----CGGAAGAGTTCTA-CGGACAAG--A-TT-TT----------AA--TTCCAACAAT-TTAAA-GAGC---TGCACCTCAG-t
gi|15 : CAT--ATGTA----AGAGAAGATCTC-CGGGCAAG--A-TT-TT----------tcttgcaaaatgtttaaaag
gi|18 : A----AGCTTCAGTGAAATGC----A----ACACTTGT-GG-CTCAAG----AGA--AG-AA-GC-GT-GGATAAG-ATTTgtcagactgaaatctctaaaacaatatgtccctgggaaggggagacata
gi|19 : AGTTGTC-CAGACAAG--A-TT-TT----------AAGTTTAC-AAAAT-GCAAA-GGGT---CGAAAC
gi|2 : AG-ATTTTA-AATTCCAAAAAT-GCAAAG-TGCTGCAA---------GTCAAAA--ATCATCA-CACTAAA---ATAAAAATAGG--ACATGCAGAACTATACGTC-ACACAGA-TCCTTTCCA--G-CA----AGTATC
gi|2 : tctccctagtgA--AG-TA-TCTAC-AGACAAT-ATTTTT-AATTCTGAAAAG-ACAAA---------------TTCTGTAAAAT--ATAAGCA-AACCTGC---ATACAAAAGTG--GTATGTGCAACTAGCCATC-ACTCCAA-CCCTTTACA--G-TA----AGTTGCGGCAAAATCCAA-CAAAT---TATAT-----------------GAACAAT--ATTT-TT----------AA--TTCCGTAATT-GCAAA-GAGC---CATAACTCAT-CAAAAAT-tacagacaatatttttaattctgaaaagacaaattctgtaaaatataagcaaacctgcatacaaaagtggtatgtgcaactagccatcactccaaccctttacagtaagttgcggcaaaatccaacaaattatatgaacaatatttttaattccgtaattgcaaagagccataactcatcaaaaatcatcaaaccataacggaaaagggatatgcatactagacctctcgctgatcctttcct
gi|2 : tctccctagtgagattttaaattccaaaaatgcaaagtgctgcaagtcaaaaatcatcacactaaaataaaaataggacatgcagaactatacgtcacacagatcctttccagcACCCTTTACAGTA----AGTTGCGGCAAAATCC----A----AC---AA---A-TT-----------------A-T--AT-GAACAAT-ATTTTT-AATTCCGTAATT-GCAAAG-AGCCATAACTC-A-----TCAAAA--ATCATCA-AACCATA---ACGGAAAAGGG--ATATGCAT-ACTAGACCTC-TCGCTGA-TCCTTTCCcatcaaaccataacggaaaagggatatgcatactagacctctcgctgatcctttcct
gi|3 : tctccctagtgagattttaaattccaaaaatgcaaagtgctgcaagtcaaaaatcatcacactaaaataaaaataggacatgcagaactatacgtcacacagatcctttccagcaagtatctacagacaatatttttaattctgaaaagacaaattctgtaaaatataagcaaacctgcatacaaaagtggtatgtgcaactagccatcactccaA--AG-AA-GC-AC-AGCCATG-ATGTTT-AATTCTGAAAAT-t
gi|3 : AAA--ATC-TCA-AAAAGGA---AAACAAGAGGGGTATATGCATAACAAGACC-C-G-AGTGA-TCG----CA--G-CA----AGTTTCGGTTAAATCAGATTACA-G-TTGTG----GGAGGAGTTCTC-TGGACAA---A-TTGTTA---------AA--TTCCAAAAAT-ACAAA-GGGT---C-TGACTCAG-TCAAAAT-TT-A----T-CAAAAGTActcaaaaaggaaaacaagaggggtatatgcataacaagacccgagtgatcgcagcaagtttcggttaaatcagattacagttgtgggaggagttctctggacaaattgttaaattccaaaaatacaaagggtctgactcagtcaaaatttatcaaaagtacataaaagagaaatgaacaactccacatcaaactgattctttttcagcaagtttcagctaaatctaactgaagatgatggtggggttctttggacaagattttgcaacagatggatagagagaaagcacataaacaatatgtgttccagagagtgtgatacataa
gi|3 : aagaagcacagccatgatgtttaattctgTCGCAGCA----AGTTTCGGTTAAAT-C----AGATTAC---AGTTG--T----G----GGA--GG-AGTTC-TCTGGACAA--ATTGTTAAATTCCAAAAAT-ACAAAG-GGTC-----TG-ACTCAGTCAAAA--TTTATCA-AA--AGT---ACATAAAAGAG--AAATGAACAACTCCACATC-AAACTGATTCTTTTTCA--G-CA----AGTTTCAGCTAAATCTAACTGAA-G-ATG-AT---GGTGGGGTTCTT-TGGACAAG--A-TT-TT----------cataaaagagaaatgaacaactccacatcaaactgattctttttcagcaagtttcagctaaatctaactgaagatgatggtggggttctttggacaagattttgcaacagatggatagagagaaagcacataaacaatatgtgttccagagagtgtgatacataa
gi|4 : aagaagcacagccatgatgtttaattctgaaaatctcaaaaaggaaaacaagaggggtatatgcataacaagacccgagtgaACAGA-ATTTTT-AATTTTGAAAAT-ACAAAG-GGGC-CAACTC-A----GTCTAAG--ATCATTA-AACCAG--------------G--ATATGTGCAACTAGACCTC-ACAGTGA-TCTTTTCCA--G-CA---------------------ACCACA-A-ATGT----CAAAGGAGTTATC-TAGCCAAGA-A-TT-TT----------AA--TTCCATAAAC-GCAAATTGGC---TGAAACTTAGTAAAAAATCATCA----AACACAAATgcaacagatggatagagagaaagcacataaacaatatgtgttccagagagtgtgatacataa
gi|4 : --TGATCTTTTCCAGCA----A-------CCA----C----A----AA---TGT------CAAA----GGA--GT-TA-TC--T-AGCCAAG-AATTTT-AATTCCATAAAC-GCAAATTGGCTGAAACTT-A----GTAAAAA--ATCATCA-AAC---------ACAAATTGG--ATATGGGCAACTAAACCTC-ACATTTA-TCGTTTCCA--C-CA----AGTTtggatatgggcaactaaacctcacatttatcgtttccaccaagttcatccgttatccagataaacttttgttacagacagacagacagcagacagacagattgacaaacatacagacaataaaagcacaaaaacaatatgtctccctgagaggggaagacata
gi|5 : acagaatttttaattttgaaaatacaaaggggccaactcagtctaagatcattaaaccaggatatgtgcaactagacctcacagTCATCA-AAC---ATTTACAAAAAAGGA--ACATGTACAACTAGACCTC--CACTGA-TCCTTCCTA--G-CA----AGTTTTTGCTAAATGCGTTCAAAT--ATTTTT-----AGGACATCTC-AGGACAAT--ATTT-TT----------AA--TTCCAAAAAT-ACAAA-GGGcatccgttatccagataaacttttgttacagacagacagacagcagacagacagattgacaaacatacagacaataaaagcacaaaaacaatatgtctccctgagaggggaagacata
gi|5 : AC--TGATCCTTCCTAGCA----AGTTTTTGCTAAATGCGTTCA----AA---TATT---TTTAGG----ACA--------TC-TCAGGACAAT-ATTTTT-AATTCCAAAAAT-ACAAAG-GGGCACAGT---ACCT--TCAAAG--TT--TTATATTCTGA---ATACAAAATGG--ATATGTGCAACTAAATCTG-ACACTTA-TTGTTTAAAGTG-CG----ATTTT--GCTAAATTTGACTTCA-G---GTAT--CAGACCAGTAATC-TGGACAAGTTT-TT-TT----------CA--TCCC-AAAAT--CAAA-AGGgcacagtaccttcaaagttttatattctgaatacaaaatggatatgtgcaactaaatctgacacttattgtttaaagtgcgattttgctaaatttgacttcaggtatcagaccagtaatctggacaagtttttttcatcccaaaatcaaaaggaggttactctgtcaaaaaccattgactgggaatataaatggggtatgacaactag
gi|5 : tcatcaaacatttacaaaaaaggaacatgtacaactagacctccTTGACTTCAGGTATCAGACCAGTAA-TC--T-GGACAAG-TTTTTTTCATCCC-AAAAT--CAAAA-GG----AGGTT-ACTCTGTCAAAA--ACCATTG-ACTGGGA---ATATAAATGGG--GTATG-ACAACTAGaggttactctgtcaaaaaccattgactgggaatataaatggggtatgacaactag
gi|6 : tcatcaaacatttacaaaaaaggaacatgtacaactagacctccactgatccttcctagcaagtttttgctaaatgcgttcaaatatttttaggacatctcaggacaatatttttaattccaaaaatacaaaggggcacagtaccttcaaagttttatattctgaatacaaaatggatatgtgcaactaaatctgacacttattgtttaaagtgcgattttgctaaatAACA-ATATTAAGTATGTTGACATGTCAC-ATATTT-ATAC--TGAGCCTTCTCACCA----AGTTTCATTGAAATGC----A----AC---TGTTGG-TTCAAG----AGA--AG-AA-TC-AT-GGGCAAA-ATTTTT-AATTTTGAAATT-GCAATG-GGCCACAAGTCAACCCAGTCAAAA--AT-ACTA-AACCAGA---ACGTTAAAGAG--GTATATGCAACTAGACCTCAAAACTTA-TCCTTGCCA--G-CA----AGTTTTGGCCACATCTGACCACATACATGTATGACAGGGGAGTTCTT-CAGGCAAG--A-TT-TT----------AA--TTCTGAAAAT-GCAAA-GGGT---TGTAACTTAA-AAGAAAT-AT-A----TGCATAAATA
gi|7 : AACACATACTA-GTAATTTGTCATGG-ACTAGATTTCATAC--TAGTCCTTTTCA-------------GGCAAGTTTC----A-----------TTGA-T--ATG----TGA--A--------------------TGTTT-AATTCCAAAAAT-GCAGAT-GAC-----------------AAAACTATCAACA-AACTAGA---AAGCAAAATGA--ATATGTGCAACTACACCTC-TGACTTA-TTCTTTCCA--GTCA----ACTTT-GGTTTAATCCCACGACA-G-ATGT----CGGAAGAGTTCTC-TGAACAAG--A-TT-TT----------gacgtcgtgc
gi|8 : -ATATTC-ATACACTGATCATTCCAAGCA----AGTTTTGGCTAAATCC----A----AC---AGCAGA-T---AT----TGA--AG-TT-CT-TC-GGGCAAT-ATTTTT-AATTCAGAAAAT-GCAAAG-GG-----------------CAACA--ACCATCA-AACCAGA---ACACAAA---G--ATATGCCCCACTTGGCATC-GCATTGA-TCTTTCCCA--T-GA----TGTTTTAGCAAAGTCTGGCCACAT--ATGTgtgacagacggacagacagaaagcacaaaaatagtatgtctaccagagagggtgagac
gi|9 : aatatcatcaaacaggaaaacaaaagggTAT--CGGAGG-GTTCTC-CAGACATG--A-TT-TTTC--------AA--TTTCAAAAAT-GCAAA-GGGC---TGTAAGTCAG-ACAAAAcagggtcaagattttgtgac
gi|9 : C-AGACATG-ATTTTTCAATTTCAAAAAT-GCAAAG-GGCTGTAAGT-----CAGACAAAA--ACGATTG-TACCAGA---ATG-AAAAAGG--ATAATCACAGCCAGAACTC-ACAacgattgtaccagaatgaaaaaggataatcacagccagaactcacagtttcagccaaatcttaaaattttttttatgacagatgcagatagacagaaagcacaaaatcaatatgcctcacagatagggaagacacat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GGATAAGATTTTGTGACAGATGGCCAGACAGTTAGACAGAAAGCACAAAAACAATGTTGAGAGAGGTTACATAATT
Unaligned ( gi|17 ): GATGGACTTAAGGACATAATGGACGGACAGAAGAAAAACACAAAAATAATATTTCTTCCTGAGAGGGGGG
Unaligned ( gi|20 ): CATATGTTGAGGAGTTACCTAGACAAGATTTGTGACAGACAGACAGAC
Unaligned ( gi|21 ): ACAGATGTCGGAGGAGTTGCCTAACAAAATTTTGAGACAGAT
Alignments
lowQualScore : 1 1 11 1 444444444444444444444444444444444444444444 555555555555555555 4444444444444 1111111111 1 11 33333333
lowQualScore : 5 5 22 1 66 3 8 66 0 7777 4 77777 111111111111111111111111111111111111111111 66 4 2 3 22 22 000000000000000000 22 2 66 3 333 333 33 22 33 222 2 33 2 5555 99 1 1111111111111 1 66 5 5 8888888888 44 2 3 3 777 0 777 00 8 00000000 0
lowQualScore : . . .. . .. . . .. . .... . ..... .......................................... .. . . . .. .. .................. .. . .. . ... ... .. .. .. ... . .. . .... .. . ............. . .. . . .......... .. . . . ... . ... .. . ........ .
lowQualScore : 0 5 00 0 00 3 0 11 4 1111 0 99999 555555555555555555555555555555555555555555 00 4 2 7 77 88 111111111111111111 99 0 66 2 555 000 33 99 11 888 4 77 7 7777 22 6 9999999999999 4 33 3 3 0000000000 66 6 3 3 000 1 888 66 0 55555555 2
consensus : AACACATACTAAGTANNTTGNCATGNCAC-ATATTT-ATAC--TGATCCTTCCCAGCA----AGTTTCGGCGAAAT----CCAAC------T---GTTGA-TTCAAG----AGA--AGAAN-CN-C-GGACAAG-ATTTTT-AA-TTCCGAAAAT-GCAAAG-GGCCGCAACTC-A----G-TCAAAA--ATC-ATCGAACCAGA---ACGCAAAAGGG--ATATGCGCAACTAGACCTC-ACACTGATCCTTTC-CA--G-CA----AGTTTCGGCTAAATCCGACCACATG-ATGTAT--CGGAGGAGTTCTCCGGACAAG--A-TT-TT----------AA--TTCCGAAAAT-GCAAA-GGGC---CGTAACT---CAG--AAAAAAT-AT-A----TACACAAGTA
Reference ( family-333 ) : AACACATACTAAGTANNTTGNCATGNCAC-ATATTT-ATAC--TGATCCTTCCCAGCA----AGTTTCGGCGAAAT----CCAAC------T---GTTGA-TTCAAG----AGA--AGAAN-CN-C-GGACAAG-ATTTTT-AA-TTCCGAAAAT-GCAAAG-GGCCGCAACTC-AC---G-TCAAAA--ATC-ATCGAACCAGA---ACGCAAAAGGG--ATATGCGCAACTAGACCTC-ACACTGATCCTTTC-CA--G-CA----AGTTTCGGCTAAATCCGACCACATG-ATGTAT--CGGAGGAGTTCTCCGGACAAG--A-TT-TT----------AA--TTCCGAAAAT-GCAAA-GGGC---CGTAACT---CAG--AAAAAAT-AT-A----TACACAAGTA
gi|1 : -C-AGGCAAA-ATGTTT-CA-TTCAGAAAAT-TAACAC-AGCCTCCACTC-TT---GGCCAAAA--ATC-AAAGAACAAAA---ATGCAAAATGT--ACATGCAAAAGGGAGCTTT-AGGCTTATCATTCC-AA--G-TATTTTAATTTTAGTGAATTCCAACT-CATG-ATTCAA--AAGAAGAAACAT--GGCCAAG--A-TTCTT----------TA--TTTT-AAACTAGAAAA-GGGT---CATAACTTTCCCG--AAAA
gi|1 : TTT-AGGC--TTATCATTCCAAGTATTTTAATTTTAGTGAATT----CCAAC------T---CATGA-TTCAAA----AGA--AGAAA-CA-T-GGCCAAG-ATTCTT-TA-TTTT-AAACTAGAAAAG-GGTCATAACTT-TC-----CCGAAA--ATC-ATTGTACTGGA---ACACATATGAT--ACAAGCATAACTAAACCTC-AAACTGATCCTTTC-CC--C-TA----AGTTTTGACTAAATTTGACCACA-G-ATG--T--TGAAGGAGTTTTTTGCACAAG--C-TT-TT----------TA--TTTCCAAAAT-GCAAT-GGtcattgtactggaacacatatgatacaagcataactaaacctcaaactgatcctttcccctaagttttgactaaatttgaccacagatgttgaaggagttttttgcacaagctttttatttccaaaatgcaatggaaatatttcaaaatcaaggaaacagatt
gi|1 : caggcaaaatgtttcattcagaaaattaacacagcctccactcttggccaaaaatcaaagaacaaaaatgcaaaatgtacatgcaaaagggagcAC--TGATCCTTTCCCCTA----AGTTTTGACTAAAT----TTGACCACAGAT---GTTGA-----------AGG--AGTTT-TT-T-GCACAAG-CTTTTT-AT-TTCC-AAAAT-GCAATG-G-----AAAT--AT---T-TC-AAA--ATC-AAGGAAACAGA---aaatatttcaaaatcaaggaaacagatt
gi|10 : caggcaaaatgtttcattcagaaaattaacacagcctccactcttggccaaaaatcaaagaacaaaaatgcaaaatgtacatgcaaaagggagctttaggcttatcattccaagtattttaattttagtgaattccaactcatgattcaaaagaagaaacatggccaagattctttattttaaactagaaaagggtcataactttcccgaaaatcattgtactggaacacatatgatacaagcataactaaacctcaaGATCCTTCC-CA--G-CA----AGTTTCAGTTAAATCTGACCACA-A-ATG--C--CAAAGGAATTCCCCAGACAAG--A-TT-TTTTTTTTTTTAAA--TACCAAGAAT-GCAAT-GGGCAATCAGAACA---CAA--AAGGGAT-AT-GTAATTACACAAGTAtt
gi|11 : atacaaattaataa-ATAT--GGGTCCTTCTCAGTA----AGTGTCATTGAAAT----GCAGC------T---GTTGA-TTGAAA----AGA--AGAAA-CT-C-AGACACT-AT------A-TTCCGGAAAT-GCAAAG-GTTCGTAATTT-A----G-TCGAAA--ATA-ATC-AGTCCGA---ATACAAAAGGG--ATAGGTACAAattggtaaactttctagttttca
gi|12 : cgttgccacatgcattattggatgccAAA--ATC-ATTCAACTAGA---ATGCAAA-GGG--ATATGGGCAACTAGAGCTC-ACACTGAACCTACC-CA--G-CA----AGTTTC-ACT-AATCC
gi|12 : AC--TAATCCTTTTCAGCA----ATTTTCGGCTAAAT----CTAAC------C---ACAGA-TTttttcagcaattttcggctaaatctaaccacagatttttacaattttgtgacagactgacgaaaagcacaaaaa
gi|13 : aaaatcattcaactagaatgcaaagggatatgggcaactagagctcacactgaacctacccagcaagtttcTTCAGCGAAAT----CCAAC------T---GTT-----CAAG----AGA--AGAAA-TA-G-GGACAAATATCTTT-AA-TTTTGAAAAT-GCAAAT-GGCCACAACTC-G----A-TCAA------T-ATAGAAACAGA---GCGCAAGAAGG--ATATGCACGACACGACCTC-AAACTGATCCATTC-Ctttacaattttgtgacagactgacgaaaagcacaaaaa
gi|14 : tttagAGATCTGACCACA-G-ATGT----CGGAAGAGTTCTACGGACAAG--A-TT-TT----------AA--TTCCAACAAT-TTAAA-GAGC---TGCACCT---CAG--t
gi|15 : CAT--ATGTA----AGAGAAGATCTCCGGGCAAG--A-TT-TT----------tcttgcaaaatgtttaaaag
gi|18 : A----AGCTTCAGTGAAAT----GCAACACT---T---GT-GG-CTCAAG----AGA--AGAAG-CG-T-GGATAAG-ATTTgtcagactgaaatctctaaaacaatatgtccctgggaaggggagacata
gi|19 : AGTTGTCCAGACAAG--A-TT-TT----------AAGTTTAC-AAAAT-GCAAA-GGGT---CGAAAC
gi|2 : AG-ATTTTA-AA-TTCCAAAAAT-GCAAAG-TGCTGCAA---------G-TCAAAA--ATC-ATCACACTAAA---ATAAAAATAGG--ACATGCAGAACTATACGTC-ACACAGATCCTTTC-CA--G-CA----AGTATC
gi|2 : tctccctagtgA--AGTAT-CTAC-AGACAAT-ATTTTT-AA-TTCTGAAAAG-ACAAA----------TTC--T---G-TAAAAT--ATA-AGCAAACCTGC---ATACAAAAGTG--GTATGTGCAACTAGCCATC-ACTCCAACCCTTTA-CA--G-TA----AGTTGCGGCAAAATCCAA-CAAAT---TATAT----------------GAACAAT--ATTT-TT----------AA--TTCCGTAATT-GCAAA-GAGC---CATAACT---CAT--CAAAAAT-tacagacaatatttttaattctgaaaagacaaattctgtaaaatataagcaaacctgcatacaaaagtggtatgtgcaactagccatcactccaaccctttacagtaagttgcggcaaaatccaacaaattatatgaacaatatttttaattccgtaattgcaaagagccataactcatcaaaaatcatcaaaccataacggaaaagggatatgcatactagacctctcgctgatcctttcct
gi|2 : tctccctagtgagattttaaattccaaaaatgcaaagtgctgcaagtcaaaaatcatcacactaaaataaaaataggacatgcagaactatacgtcacacagatcctttccagcACCCTTTACAGTA----AGTTGCGGCAAAAT----CCAAC------A---A---A-TT-----------------A-TA-T-GAACAAT-ATTTTT-AA-TTCCGTAATT-GCAAAG-AGCCATAACTC-A------TCAAAA--ATC-ATCAAACCATA---ACGGAAAAGGG--ATATGCAT-ACTAGACCTC-TCGCTGATCCTTTC-Ccatcaaaccataacggaaaagggatatgcatactagacctctcgctgatcctttcct
gi|3 : tctccctagtgagattttaaattccaaaaatgcaaagtgctgcaagtcaaaaatcatcacactaaaataaaaataggacatgcagaactatacgtcacacagatcctttccagcaagtatctacagacaatatttttaattctgaaaagacaaattctgtaaaatataagcaaacctgcatacaaaagtggtatgtgcaactagccatcactccaA--AGAAG-CA-C-AGCCATG-ATGTTT-AA-TTCTGAAAAT---------------------C-----TCAAAA--A-----------GGA---AAACAAGAGGGGTATATGCATAACAAGACC-C-G-AGTGATCG-----CA--G-CA----AGTTTCGGTTAAATCAGATTACA-G-TTGTG----GGAGGAGTTCTCTGGACAA---A-TTGTTA---------AA--TTCCAAAAAT-ACAAA-GGGT---C-TGACT---CAG--TCAAAAT-TT-A----T-CAAAAGTAt
gi|3 : TCGCAGCA----AGTTTCGGTTAAAT----CAGAT------TACAGTTG---T---G----GGA--GGAGTTCT-CTGGACAA--ATTGTT-AAATTCCAAAAAT-ACAAAG-GGTC-TGACTC-A----G-TCAAAA--TTT-ATCAAA--AGT---ACATAAAAGAG--AAATGAACAACTCCACATC-AAACTGATTCTTTTTCA--G-CA----AGTTTCAGCTAAATCTAACTGAA-G-ATG-AT---GGTGGGGTTCTTTGGACAAG--A-TT-TT----------cataaaagagaaatgaacaactccacatcaaactgattctttttcagcaagtttcagctaaatctaactgaagatgatggtggggttctttggacaagattttgcaacagatggatagagagaaagcacataaacaatatgtgttccagagagtgtgatacataa
gi|4 : aagaagcacagccatgatgtttaattctgaaaatctcaaaaaggaaaacaagaggggtatatgcataacaagacccgagtgaACAGA-ATTTTT-AA-TTTTGAAAAT-ACAAAG-GGGC-CAACTC-A----G-TCTAAG--ATC-ATTAAACCAG--------------G--ATATGTGCAACTAGACCTC-ACAGTGATCTTTTC-CA--G-CA---------------------ACCACA-A-ATG--T--CAAAGGAGTTATCTAGCCAAGA-A-TT-TT----------AA--TTCCATAAAC-GCAAATTGGC---TGAAACT---TAGT-AAAAAATCATCA----AACACAAATgcaacagatggatagagagaaagcacataaacaatatgtgttccagagagtgtgatacataa
gi|4 : --TGATCTTTTCCAGCA----A-------CCA--------CAAA------T---GT------CAAA----GGA--GTTAT-CT---AGCCAAG-AATTTT-AA-TTCCATAAAC-GCAAATTGGCTGAAACTT-A----G-TAAAAA--ATC-ATCAAAC---------ACAAATTGG--ATATGGGCAACTAAACCTC-ACATTTATCGTTTC-CA--C-CA----AGTTtggatatgggcaactaaacctcacatttatcgtttccaccaagttcatccgttatccagataaacttttgttacagacagacagacagcagacagacagattgacaaacatacagacaataaaagcacaaaaacaatatgtctccctgagaggggaagacata
gi|5 : acagaatttttaattttgaaaatacaaaggggccaactcagtctaagatcattaaaccaggatatgtgcaactagacctcacagTC-ATCAAAC---ATTTACAAAAAAGGA--ACATGTACAACTAGACCTC--CACTGATCCTTCC-TA--G-CA----AGTTTTTGCTAAATGCGTTCAAAT--ATTTTT-----AGGACATCTCAGGACAAT--ATTT-TT----------AA--TTCCAAAAAT-ACAAA-GGGcatccgttatccagataaacttttgttacagacagacagacagcagacagacagattgacaaacatacagacaataaaagcacaaaaacaatatgtctccctgagaggggaagacata
gi|5 : AC--TGATCCTTCCTAGCA----AGTTTTTGCTAAATGCGTTCAAA------T---ATT---TTTAGG----ACA------T-CT-CAGGACAAT-ATTTTT-AA-TTCCAAAAAT-ACAAAG-GGGCACAGTAC--C---T-TCAAAG--TTTTAT--ATTCTGA---ATACAAAATGG--ATATGTGCAACTAAATCTG-ACACTTATTGTTTA-AAGTG-CG----ATTTT--GCTAAATTTGACTTCA-G---GTAT--CAGACCAGTAATCTGGACAAGTTT-TT-TT----------CA--TCCC-AAAAT--CAAA-AGGA---GGTTACT---CTGTCAAAAAgcacagtaccttcaaagttttatattctgaatacaaaatggatatgtgcaactaaatctgacacttattgtttaaagtgcgattttgctaaatttgacttcaggtatcagaccagtaatctggacaagtttttttcatcccaaaatcaaaaggaggttactctgtcaaaaaccattgactgggaatataaatggggtatgacaactag
gi|5 : tcatcaaacatttacaaaaaaggaacatgtacaactagacctccTTGACTTCAGGTATCAGACCAGTAA-TC-T-GGACAAG-TTTTTTTCA-TCCC-AAAAT--CAAAA-GGAGGTTACTC--T---G-TCAAAA--ACC-ATTGACTGGGA---ATATAAATGGG--GTATG-ACAACTAGccattgactgggaatataaatggggtatgacaactag
gi|6 : tcatcaaacatttacaaaaaaggaacatgtacaactagacctccactgatccttcctagcaagtttttgctaaatgcgttcaaatatttttaggacatctcaggacaatatttttaattccaaaaatacaaaggggcacagtaccttcaaagttttatattctgaatacaaaatggatatgtgcaactaaatctgacacttattgtttaaagtgcgattttgctaaatAACA-ATATTAAGTATGTTGACATGTCAC-ATATTT-ATAC--TGAGCCTTCTCACCA----AGTTTCATTGAAAT----GCAAC------T---GTTGG-TTCAAG----AGA--AGAAT-CA-T-GGGCAAA-ATTTTT-AA-TTTTGAAATT-GCAATG-GGCCACAAGTCAACCCAG-TCAAAA--AT--ACTAAACCAGA---ACGTTAAAGAG--GTATATGCAACTAGACCTCAAAACTTATCCTTGC-CA--G-CA----AGTTTTGGCCACATCTGACCACATACATGTATGACAGGGGAGTTCTTCAGGCAAG--A-TT-TT----------AA--TTCTGAAAAT-GCAAA-GGGT---TGTAACT---TAA--AAGAAAT-AT-A----TGCATAAATA
gi|7 : AACACATACTA-GTAATTTGTCATGG-ACTAGATTTCATAC--TAGTCCTTTTCA-------------GGCAAGTT----TCA-------------TTGA-T--ATG----TGA--A-------------------TGTTT-AA-TTCCAAAAAT-GCAGAT-GA------------------CAAAACTATC-AACAAACTAGA---AAGCAAAATGA--ATATGTGCAACTACACCTC-TGACTTATTCTTTC-CA--GTCA----ACTTT-GGTTTAATCCCACGACA-G-ATG--T--CGGAAGAGTTCTCTGAACAAG--A-TT-TT----------gacgtcgtgc
gi|8 : -ATATTC-ATACACTGATCATTCCAAGCA----AGTTTTGGCTAAAT----CCAAC------A---GCAGA-T---AT----TGA--AGTTC-TT-C-GGGCAAT-ATTTTT-AA-TTCAGAAAAT-GCAAAG-G---GCAAC---------------A--ACC-ATCAAACCAGA---ACACAAA---G--ATATGCCCCACTTGGCATC-GCATTGATCTTTCC-CA--T-GA----TGTTTTAGCAAAGTCTGGCCACAT--ATGTgtgacagacggacagacagaaagcacaaaaatagtatgtctaccagagagggtgagac
gi|9 : aatatcatcaaacaggaaaacaaaagggTAT--CGGAGG-GTTCTCCAGACATG--A-TT-TTTC--------AA--TTTCAAAAAT-GCAAA-GGGC---TGTAAGT---CAG--ACAAAAcagggtcaagattttgtgac
gi|9 : -C-AGACATG-ATTTTTCAA-TTTCAAAAAT-GCAAAG-GGCTGTAAGTC-A----G-ACAAAA--ACG-ATTGTACCAGA---ATG-AAAAAGG--ATAATCACAGCCAGAACTC-ACAacgattgtaccagaatgaaaaaggataatcacagccagaactcacagtttcagccaaatcttaaaattttttttatgacagatgcagatagacagaaagcacaaaatcaatatgcctcacagatagggaagacacat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GGATAAGATTTTGTGACAGATGGCCAGACAGTTAGACAGAAAGCACAAAAACAATGTTGAGAGAGGTTACATAATT
Unaligned ( gi|17 ): GATGGACTTAAGGACATAATGGACGGACAGAAGAAAAACACAAAAATAATATTTCTTCCTGAGAGGGGGG
Unaligned ( gi|20 ): CATATGTTGAGGAGTTACCTAGACAAGATTTGTGACAGACAGACAGAC
Unaligned ( gi|21 ): ACAGATGTCGGAGGAGTTGCCTAACAAAATTTTGAGACAGAT
Alignments
lowQualScore : 1 1 11 1 444444444444444444444444444444444444444444 2222222222222222222 4444444444444 1111111111 1 11 33333333
lowQualScore : 5 5 22 1 66 3 8 66 0 7777 4 77777 111111111111111111111111111111111111111111 66 6 3 22 22 6666666666666666666 55 66 3 333 333 33 22 33 222 2 33 2 5555 99 1 1111111111111 1 66 5 5 8888888888 44 2 3 3 777 0 777 00 8 00000000 0
lowQualScore : . . .. . .. . . .. . .... . ..... .......................................... .. . . .. .. ................... .. .. . ... ... .. .. .. ... . .. . .... .. . ............. . .. . . .......... .. . . . ... . ... .. . ........ .
lowQualScore : 0 5 00 0 00 3 0 11 4 1111 0 99999 333333333333333333333333333333333333333333 00 7 7 77 88 7777777777777777777 00 66 2 555 000 33 99 11 888 4 77 7 7777 22 6 9999999999999 4 33 3 3 0000000000 66 6 3 3 000 1 888 66 0 55555555 2
consensus : AACACATACTAAGTANNTTGNCATGNCAC-ATATTT-ATAC--TGATCCTTCCCAGCA----AGTTTCGGCGAAAT----CCAAC------T---GTTGA-TTCAAG----AGA--AGAA-NCN-C-GGACAAG-ATTTTT-AATTCCGAAAAT-GCAAAG-GGCCG-----CAACTC--AGTCAAAA--ATCATCGAACCAGA---ACGCAAAAGGG--ATATGCGCAACTAGACCTC-ACACTGA-TCCTTTCCA--G-CA----AGTTTCGGCTAAATCCGACCACATG-ATGTAT--CGGAGGAGTTCTCCGGACAAG--A-TT-TT----------AA--TTCCGAAAAT-GCAAA-GGGC---CGTAACT---CAG--AAAAAAT-AT-A----TACACAAGTA
Reference ( family-333 ) : AACACATACTAAGTANNTTGNCATGNCAC-ATATTT-ATAC--TGATCCTTCCCAGCA----AGTTTCGGCGAAAT----CCAAC------T---GTTGA-TTCAAG----AGA--AGAA-NCN-C-GGACAAG-ATTTTT-AATTCCGAAAAT-GCAAAG-GGCCG-----CAACTC--AGTCAAAA--ATCATCGAACCAGA---ACGCAAAAGGG--ATATGCGCAACTAGACCTC-ACACTGA-TCCTTTCCA--G-CA----AGTTTCGGCTAAATCCGACCACATG-ATGTAT--CGGAGGAGTTCTCCGGACAAG--A-TT-TT----------AA--TTCCGAAAAT-GCAAA-GGGC---CGTAACT---CAG--AAAAAAT-AT-A----TACACAAGTA
gi|1 : -C-AGGCAAA-ATGTTT-CATTCAGAAAAT-TAACAC-AGCCT-----CCACTCTTGGCCAAAA--ATCAAAGAACAAAA---ATGCAAAATGT--ACATGCAAAAGGGAGCTTT-AGGCTTA-TCATTCCAA--G-TATTTTAATTTTAGTGAATTCCAACT-CATG-ATTCAA--AAGAAGAAACAT--GGCCAAG--A-TTCTT----------TA--TTTT-AAACTAGAAAA-GGGT---CATAACTTTCCCG--AAAA
gi|1 : TTT-AGGC--TTATCATTCCAAGTATTTTAATTTTAGTGAATT----CCAAC------T---CATGA-TTCAAA----AGA--AGAA-ACA-T-GGCCAAG-ATTCTT-TATTTT-AAACTAGAAAAG-GGTCA-----TAACTT--TCCCGAAA--ATCATTGTACTGGA---ACACATATGAT--ACAAGCATAACTAAACCTC-AAACTGA-TCCTTTCCC--C-TA----AGTTTTGACTAAATTTGACCACA-G-ATG--T--TGAAGGAGTTTTTTGCACAAG--C-TT-TT----------TA--TTTCCAAAAT-GCAAT-GGtcattgtactggaacacatatgatacaagcataactaaacctcaaactgatcctttcccctaagttttgactaaatttgaccacagatgttgaaggagttttttgcacaagctttttatttccaaaatgcaatggaaatatttcaaaatcaaggaaacagatt
gi|1 : caggcaaaatgtttcattcagaaaattaacacagcctccactcttggccaaaaatcaaagaacaaaaatgcaaaatgtacatgcaaaagggagcAC--TGATCCTTTCCCCTA----AGTTTTGACTAAAT----TTGACCACAGAT---GTTGA-----------AGG--AGTT-TTT-T-GCACAAG-CTTTTT-ATTTCC-AAAAT-GCAATG-G----------AAAT---ATTTCAAA--ATCAAGGAAACAGA---aaatatttcaaaatcaaggaaacagatt
gi|10 : caggcaaaatgtttcattcagaaaattaacacagcctccactcttggccaaaaatcaaagaacaaaaatgcaaaatgtacatgcaaaagggagctttaggcttatcattccaagtattttaattttagtgaattccaactcatgattcaaaagaagaaacatggccaagattctttattttaaactagaaaagggtcataactttcccgaaaatcattgtactggaacacatatgatacaagcataactaaacctcaaGA-TCCTTCCCA--G-CA----AGTTTCAGTTAAATCTGACCACA-A-ATG--C--CAAAGGAATTCCCCAGACAAG--A-TT-TTTTTTTTTTTAAA--TACCAAGAAT-GCAAT-GGGCAATCAGAACA---CAA--AAGGGAT-AT-GTAATTACACAAGTAtt
gi|11 : atacaaattaataa-ATAT--GGGTCCTTCTCAGTA----AGTGTCATTGAAAT----GCAGC------T---GTTGA-TTGAAA----AGA--AGAA-ACT-C-AGACACT-AT------ATTCCGGAAAT-GCAAAG-GTTCG-----TAATTT--AGTCGAAA--ATAATC-AGTCCGA---ATACAAAAGGG--ATAGGTACAAattggtaaactttctagttttca
gi|12 : cgttgccacatgcattattggatgccAAA--ATCATTCAACTAGA---ATGCAAA-GGG--ATATGGGCAACTAGAGCTC-ACACTGA-ACCTACCCA--G-CA----AGTTTC-ACT-AATCC
gi|12 : AC--TAATCCTTTTCAGCA----ATTTTCGGCTAAAT----CTAAC------C---ACAGA-TTttttcagcaattttcggctaaatctaaccacagatttttacaattttgtgacagactgacgaaaagcacaaaaa
gi|13 : aaaatcattcaactagaatgcaaagggatatgggcaactagagctcacactgaacctacccagcaagtttcTTCAGCGAAAT----CCAAC------T---GTT-----CAAG----AGA--AGAA-ATA-G-GGACAAATATCTTT-AATTTTGAAAAT-GCAAAT-GGCCA-----CAACTC--GATCAA------TATAGAAACAGA---GCGCAAGAAGG--ATATGCACGACACGACCTC-AAACTGA-TCCATTCCtttacaattttgtgacagactgacgaaaagcacaaaaa
gi|14 : tttagAGATCTGACCACA-G-ATGT----CGGAAGAGTTCTACGGACAAG--A-TT-TT----------AA--TTCCAACAAT-TTAAA-GAGC---TGCACCT---CAG--t
gi|15 : CAT--ATGTA----AGAGAAGATCTCCGGGCAAG--A-TT-TT----------tcttgcaaaatgtttaaaag
gi|18 : A----AGCTTCAGTGAAAT----GCAACACT---T---GT-GG-CTCAAG----AGA--AGAA-GCG-T-GGATAAG-ATTTgtcagactgaaatctctaaaacaatatgtccctgggaaggggagacata
gi|19 : AGTTGTCCAGACAAG--A-TT-TT----------AAGTTTAC-AAAAT-GCAAA-GGGT---CGAAAC
gi|2 : AG-ATTTTA-AATTCCAAAAAT-GCAAAG-TGCTG-----CAA------GTCAAAA--ATCATCACACTAAA---ATAAAAATAGG--ACATGCAGAACTATACGTC-ACACAGA-TCCTTTCCA--G-CA----AGTATC
gi|2 : tctccctagtgA--AGTA-TCTAC-AGACAAT-ATTTTT-AATTCTGAAAAG-ACAAA---------------TTC--TGTAAAAT--ATAAGCAAACCTGC---ATACAAAAGTG--GTATGTGCAACTAGCCATC-ACTCCAA-CCCTTTACA--G-TA----AGTTGCGGCAAAATCCAA-CAAAT---TATAT----------------GAACAAT--ATTT-TT----------AA--TTCCGTAATT-GCAAA-GAGC---CATAACT---CAT--CAAAAAT-tacagacaatatttttaattctgaaaagacaaattctgtaaaatataagcaaacctgcatacaaaagtggtatgtgcaactagccatcactccaaccctttacagtaagttgcggcaaaatccaacaaattatatgaacaatatttttaattccgtaattgcaaagagccataactcatcaaaaatcatcaaaccataacggaaaagggatatgcatactagacctctcgctgatcctttcct
gi|2 : tctccctagtgagattttaaattccaaaaatgcaaagtgctgcaagtcaaaaatcatcacactaaaataaaaataggacatgcagaactatacgtcacacagatcctttccagcACCCTTTACAGTA----AGTTGCGGCAAAAT----CCAAC------A---A---A-TT------------------ATA-T-GAACAAT-ATTTTT-AATTCCGTAATT-GCAAAG-AGCCA-----TAACTC--A-TCAAAA--ATCATCAAACCATA---ACGGAAAAGGG--ATATGCAT-ACTAGACCTC-TCGCTGA-TCCTTTCCcatcaaaccataacggaaaagggatatgcatactagacctctcgctgatcctttcct
gi|3 : tctccctagtgagattttaaattccaaaaatgcaaagtgctgcaagtcaaaaatcatcacactaaaataaaaataggacatgcagaactatacgtcacacagatcctttccagcaagtatctacagacaatatttttaattctgaaaagacaaattctgtaaaatataagcaaacctgcatacaaaagtggtatgtgcaactagccatcactccaA--AGAA-GCA-C-AGCCATG-ATGTTT-AATTCTGAAAAT-----------------------C----TCAAAA--A----------GGA---AAACAAGAGGGGTATATGCATAACAAGACC-C-G-AGTGA-TCG----CA--G-CA----AGTTTCGGTTAAATCAGATTACA-G-TTGTG----GGAGGAGTTCTCTGGACAA---A-TTGTTA---------AA--TTCCAAAAAT-ACAAA-GGGT---C-TGACT---CAG--TCAAAAT-TT-A----T-CAAAAGTAt
gi|3 : TCGCAGCA----AGTTTCGGTTAAAT----CAGAT------TACAGTTG--T----G----GGA--GGAGTTCT-CTGGACAA--ATTGTTAAATTCCAAAAAT-ACAAAG-GGTC------TGACTC--AGTCAAAA--TTTATCAAA--AGT---ACATAAAAGAG--AAATGAACAACTCCACATC-AAACTGATTCTTTTTCA--G-CA----AGTTTCAGCTAAATCTAACTGAA-G-ATG-AT---GGTGGGGTTCTTTGGACAAG--A-TT-TT----------cataaaagagaaatgaacaactccacatcaaactgattctttttcagcaagtttcagctaaatctaactgaagatgatggtggggttctttggacaagattttgcaacagatggatagagagaaagcacataaacaatatgtgttccagagagtgtgatacataa
gi|4 : aagaagcacagccatgatgtttaattctgaaaatctcaaaaaggaaaacaagaggggtatatgcataacaagacccgagtgaACAGA-ATTTTT-AATTTTGAAAAT-ACAAAG-GGGC------CAACTC--AGTCTAAG--ATCATTAAACCAG--------------G--ATATGTGCAACTAGACCTC-ACAGTGA-TCTTTTCCA--G-CA---------------------ACCACA-A-ATG--T--CAAAGGAGTTATCTAGCCAAGA-A-TT-TT----------AA--TTCCATAAAC-GCAAATTGGC---TGAAACT---TAGT-AAAAAATCATCA----AACACAAATgcaacagatggatagagagaaagcacataaacaatatgtgttccagagagtgtgatacataa
gi|4 : --TGATCTTTTCCAGCA----A-------CCA--------CAAA------T---GT------CAAA----GGA--GTTA-TCT---AGCCAAG-AATTTT-AATTCCATAAAC-GCAAATTGGCTG-----AAACTT--AGTAAAAA--ATCATCAAAC---------ACAAATTGG--ATATGGGCAACTAAACCTC-ACATTTA-TCGTTTCCA--C-CA----AGTTtggatatgggcaactaaacctcacatttatcgtttccaccaagttcatccgttatccagataaacttttgttacagacagacagacagcagacagacagattgacaaacatacagacaataaaagcacaaaaacaatatgtctccctgagaggggaagacata
gi|5 : acagaatttttaattttgaaaatacaaaggggccaactcagtctaagatcattaaaccaggatatgtgcaactagacctcacagTCATCAAAC---ATTTACAAAAAAGGA--ACATGTACAACTAGACCTC--CACTGA-TCCTTCCTA--G-CA----AGTTTTTGCTAAATGCGTTCAAAT--ATTTTT-----AGGACATCTCAGGACAAT--ATTT-TT----------AA--TTCCAAAAAT-ACAAA-GGGcatccgttatccagataaacttttgttacagacagacagacagcagacagacagattgacaaacatacagacaataaaagcacaaaaacaatatgtctccctgagaggggaagacata
gi|5 : AC--TGATCCTTCCTAGCA----AGTTTTTGCTAAATGCGTTCAAA------T---ATT---TTTAGG----ACA-------TCT-CAGGACAAT-ATTTTT-AATTCCAAAAAT-ACAAAG-GGGCA-----CAGTAC--CTTCAAAGT-TTTAT--ATTCTGA---ATACAAAATGG--ATATGTGCAACTAAATCTG-ACACTTA-TTGTTTAAAGTG-CG----ATTTT--GCTAAATTTGACTTCA-G---GTAT--CAGACCAGTAATCTGGACAAGTTT-TT-TT----------CA--TCCC-AAAAT--CAAA-AGGA---GGTTACT---CTGTCAAAAAgcacagtaccttcaaagttttatattctgaatacaaaatggatatgtgcaactaaatctgacacttattgtttaaagtgcgattttgctaaatttgacttcaggtatcagaccagtaatctggacaagtttttttcatcccaaaatcaaaaggaggttactctgtcaaaaaccattgactgggaatataaatggggtatgacaactag
gi|5 : tcatcaaacatttacaaaaaaggaacatgtacaactagacctccTTGACTTCAGGTATCAGACCAGTA-ATC-T-GGACAAG-TTTTTTTCATCCC-AAAAT--CAAAA-GGAGG-----TTACTC--TGTCAAAA--ACCATTGACTGGGA---ATATAAATGGG--GTATG-ACAACTAGccattgactgggaatataaatggggtatgacaactag
gi|6 : tcatcaaacatttacaaaaaaggaacatgtacaactagacctccactgatccttcctagcaagtttttgctaaatgcgttcaaatatttttaggacatctcaggacaatatttttaattccaaaaatacaaaggggcacagtaccttcaaagttttatattctgaatacaaaatggatatgtgcaactaaatctgacacttattgtttaaagtgcgattttgctaaatAACA-ATATTAAGTATGTTGACATGTCAC-ATATTT-ATAC--TGAGCCTTCTCACCA----AGTTTCATTGAAAT----GCAAC------T---GTTGG-TTCAAG----AGA--AGAA-TCA-T-GGGCAAA-ATTTTT-AATTTTGAAATT-GCAATG-GGCCACAAGTCAACCC--AGTCAAAA--AT-ACTAAACCAGA---ACGTTAAAGAG--GTATATGCAACTAGACCTCAAAACTTA-TCCTTGCCA--G-CA----AGTTTTGGCCACATCTGACCACATACATGTATGACAGGGGAGTTCTTCAGGCAAG--A-TT-TT----------AA--TTCTGAAAAT-GCAAA-GGGT---TGTAACT---TAA--AAGAAAT-AT-A----TGCATAAATA
gi|7 : AACACATACTA-GTAATTTGTCATGG-ACTAGATTTCATAC--TAGTCCTTTTCA-------------GGCAAGTT----TCA-------------TTGA-T--ATG----TGA--A-------------------TGTTT-AATTCCAAAAAT-GCAGAT-GA-------------------CAAAACTATCAACAAACTAGA---AAGCAAAATGA--ATATGTGCAACTACACCTC-TGACTTA-TTCTTTCCA--GTCA----ACTTT-GGTTTAATCCCACGACA-G-ATG--T--CGGAAGAGTTCTCTGAACAAG--A-TT-TT----------gacgtcgtgc
gi|8 : -ATATTC-ATACACTGATCATTCCAAGCA----AGTTTTGGCTAAAT----CCAAC------A---GCAGA-T---AT----TGA--AGTT-CTT-C-GGGCAAT-ATTTTT-AATTCAGAAAAT-GCAAAG-G---G-----CAAC-----------A--ACCATCAAACCAGA---ACACAAA---G--ATATGCCCCACTTGGCATC-GCATTGA-TCTTTCCCA--T-GA----TGTTTTAGCAAAGTCTGGCCACAT--ATGTgtgacagacggacagacagaaagcacaaaaatagtatgtctaccagagagggtgagac
gi|9 : aatatcatcaaacaggaaaacaaaagggTAT--CGGAGG-GTTCTCCAGACATG--A-TT-TTTC--------AA--TTTCAAAAAT-GCAAA-GGGC---TGTAAGT---CAG--ACAAAAcagggtcaagattttgtgac
gi|9 : -C-AGACATG-ATTTTTCAATTTCAAAAAT-GCAAAG-GGCTG-----TAAGTC--AGACAAAA--ACGATTGTACCAGA---ATG-AAAAAGG--ATAATCACAGCCAGAACTC-ACAacgattgtaccagaatgaaaaaggataatcacagccagaactcacagtttcagccaaatcttaaaattttttttatgacagatgcagatagacagaaagcacaaaatcaatatgcctcacagatagggaagacacat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GGATAAGATTTTGTGACAGATGGCCAGACAGTTAGACAGAAAGCACAAAAACAATGTTGAGAGAGGTTACATAATT
Unaligned ( gi|17 ): GATGGACTTAAGGACATAATGGACGGACAGAAGAAAAACACAAAAATAATATTTCTTCCTGAGAGGGGGG
Unaligned ( gi|20 ): CATATGTTGAGGAGTTACCTAGACAAGATTTGTGACAGACAGACAGAC
Unaligned ( gi|21 ): ACAGATGTCGGAGGAGTTGCCTAACAAAATTTTGAGACAGAT
Alignments
lowQualScore : 1 1 11 1 444444444444444444444444444444444444444444 2222222222222222222 4444444444444 1111111111 1 11 33333333
lowQualScore : 5 5 22 1 66 3 8 66 0 7777 4 77777 111111111111111111111111111111111111111111 66 6 3 22 22 6666666666666666666 55 66 3 333 333 33 22 33 222 2 33 2 5555 99 1 1111111111111 1 66 5 5 8888888888 44 2 3 3 777 0 777 00 8 00000000 0
lowQualScore : . . .. . .. . . .. . .... . ..... .......................................... .. . . .. .. ................... .. .. . ... ... .. .. .. ... . .. . .... .. . ............. . .. . . .......... .. . . . ... . ... .. . ........ .
lowQualScore : 0 5 00 0 00 3 0 11 4 1111 0 99999 333333333333333333333333333333333333333333 00 7 7 77 88 7777777777777777777 00 66 2 555 000 33 99 11 888 4 77 7 7777 22 6 9999999999999 4 33 3 3 0000000000 66 6 3 3 000 1 888 66 0 55555555 2
consensus : AACACATACTAAGTANNTTGNCATGNCAC-ATATTT-ATAC--TGATCCTTCCCAGCA----AGTTTCGGCGAAAT----CCAAC------T---GTTGA-TTCAAG----AGA--AGAA-NCN-C-GGACAAG-ATTTTT-AATTCCGAAAAT-GCAAAG-GGCCG-----CAACTC--AGTCAAAA--ATCATCGAACCAGA---ACGCAAAAGGG--ATATGCGCAACTAGACCTC-ACACTGA-TCCTTTCCA--G-CA----AGTTTCGGCTAAATCCGACCACATG-ATGTAT--CGGAGGAGTTCTCCGGACAAG--A-TT-TT----------AA--TTCCGAAAAT-GCAAA-GGGC---CGTAACT---CAG--AAAAAAT-AT-A----TACACAAGTA
Reference ( family-333 ) : AACACATACTAAGTANNTTGNCATGNCAC-ATATTT-ATAC--TGATCCTTCCCAGCA----AGTTTCGGCGAAAT----CCAAC------T---GTTGA-TTCAAG----AGA--AGAA-NCN-C-GGACAAG-ATTTTT-AATTCCGAAAAT-GCAAAG-GGCCG-----CAACTC--AGTCAAAA--ATCATCGAACCAGA---ACGCAAAAGGG--ATATGCGCAACTAGACCTC-ACACTGA-TCCTTTCCA--G-CA----AGTTTCGGCTAAATCCGACCACATG-ATGTAT--CGGAGGAGTTCTCCGGACAAG--A-TT-TT----------AA--TTCCGAAAAT-GCAAA-GGGC---CGTAACT---CAG--AAAAAAT-AT-A----TACACAAGTA
gi|1 : -C-AGGCAAA-ATGTTT-CATTCAGAAAAT-TAACAC-AGCCT-----CCACTCTTGGCCAAAA--ATCAAAGAACAAAA---ATGCAAAATGT--ACATGCAAAAGGGAGCTTT-AGGCTTA-TCATTCCAA--G-TATTTTAATTTTAGTGAATTCCAACT-CATG-ATTCAA--AAGAAGAAACAT--GGCCAAG--A-TTCTT----------TA--TTTT-AAACTAGAAAA-GGGT---CATAACTTTCCCG--AAAA
gi|1 : TTT-AGGC--TTATCATTCCAAGTATTTTAATTTTAGTGAATT----CCAAC------T---CATGA-TTCAAA----AGA--AGAA-ACA-T-GGCCAAG-ATTCTT-TATTTT-AAACTAGAAAAG-GGTCA-----TAACTT--TCCCGAAA--ATCATTGTACTGGA---ACACATATGAT--ACAAGCATAACTAAACCTC-AAACTGA-TCCTTTCCC--C-TA----AGTTTTGACTAAATTTGACCACA-G-ATG--T--TGAAGGAGTTTTTTGCACAAG--C-TT-TT----------TA--TTTCCAAAAT-GCAAT-GGtcattgtactggaacacatatgatacaagcataactaaacctcaaactgatcctttcccctaagttttgactaaatttgaccacagatgttgaaggagttttttgcacaagctttttatttccaaaatgcaatggaaatatttcaaaatcaaggaaacagatt
gi|1 : caggcaaaatgtttcattcagaaaattaacacagcctccactcttggccaaaaatcaaagaacaaaaatgcaaaatgtacatgcaaaagggagcAC--TGATCCTTTCCCCTA----AGTTTTGACTAAAT----TTGACCACAGAT---GTTGA-----------AGG--AGTT-TTT-T-GCACAAG-CTTTTT-ATTTCC-AAAAT-GCAATG-G----------AAAT---ATTTCAAA--ATCAAGGAAACAGA---aaatatttcaaaatcaaggaaacagatt
gi|10 : caggcaaaatgtttcattcagaaaattaacacagcctccactcttggccaaaaatcaaagaacaaaaatgcaaaatgtacatgcaaaagggagctttaggcttatcattccaagtattttaattttagtgaattccaactcatgattcaaaagaagaaacatggccaagattctttattttaaactagaaaagggtcataactttcccgaaaatcattgtactggaacacatatgatacaagcataactaaacctcaaGA-TCCTTCCCA--G-CA----AGTTTCAGTTAAATCTGACCACA-A-ATG--C--CAAAGGAATTCCCCAGACAAG--A-TT-TTTTTTTTTTTAAA--TACCAAGAAT-GCAAT-GGGCAATCAGAACA---CAA--AAGGGAT-AT-GTAATTACACAAGTAtt
gi|11 : atacaaattaataa-ATAT--GGGTCCTTCTCAGTA----AGTGTCATTGAAAT----GCAGC------T---GTTGA-TTGAAA----AGA--AGAA-ACT-C-AGACACT-AT------ATTCCGGAAAT-GCAAAG-GTTCG-----TAATTT--AGTCGAAA--ATAATC-AGTCCGA---ATACAAAAGGG--ATAGGTACAAattggtaaactttctagttttca
gi|12 : cgttgccacatgcattattggatgccAAA--ATCATTCAACTAGA---ATGCAAA-GGG--ATATGGGCAACTAGAGCTC-ACACTGA-ACCTACCCA--G-CA----AGTTTC-ACT-AATCC
gi|12 : AC--TAATCCTTTTCAGCA----ATTTTCGGCTAAAT----CTAAC------C---ACAGA-TTttttcagcaattttcggctaaatctaaccacagatttttacaattttgtgacagactgacgaaaagcacaaaaa
gi|13 : aaaatcattcaactagaatgcaaagggatatgggcaactagagctcacactgaacctacccagcaagtttcTTCAGCGAAAT----CCAAC------T---GTT-----CAAG----AGA--AGAA-ATA-G-GGACAAATATCTTT-AATTTTGAAAAT-GCAAAT-GGCCA-----CAACTC--GATCAA------TATAGAAACAGA---GCGCAAGAAGG--ATATGCACGACACGACCTC-AAACTGA-TCCATTCCtttacaattttgtgacagactgacgaaaagcacaaaaa
gi|14 : tttagAGATCTGACCACA-G-ATGT----CGGAAGAGTTCTACGGACAAG--A-TT-TT----------AA--TTCCAACAAT-TTAAA-GAGC---TGCACCT---CAG--t
gi|15 : CAT--ATGTA----AGAGAAGATCTCCGGGCAAG--A-TT-TT----------tcttgcaaaatgtttaaaag
gi|18 : A----AGCTTCAGTGAAAT----GCAACACT---T---GT-GG-CTCAAG----AGA--AGAA-GCG-T-GGATAAG-ATTTgtcagactgaaatctctaaaacaatatgtccctgggaaggggagacata
gi|19 : AGTTGTCCAGACAAG--A-TT-TT----------AAGTTTAC-AAAAT-GCAAA-GGGT---CGAAAC
gi|2 : AG-ATTTTA-AATTCCAAAAAT-GCAAAG-TGCTG-----CAA------GTCAAAA--ATCATCACACTAAA---ATAAAAATAGG--ACATGCAGAACTATACGTC-ACACAGA-TCCTTTCCA--G-CA----AGTATC
gi|2 : tctccctagtgA--AGTA-TCTAC-AGACAAT-ATTTTT-AATTCTGAAAAG-ACAAA---------------TTC--TGTAAAAT--ATAAGCAAACCTGC---ATACAAAAGTG--GTATGTGCAACTAGCCATC-ACTCCAA-CCCTTTACA--G-TA----AGTTGCGGCAAAATCCAA-CAAAT---TATAT----------------GAACAAT--ATTT-TT----------AA--TTCCGTAATT-GCAAA-GAGC---CATAACT---CAT--CAAAAAT-tacagacaatatttttaattctgaaaagacaaattctgtaaaatataagcaaacctgcatacaaaagtggtatgtgcaactagccatcactccaaccctttacagtaagttgcggcaaaatccaacaaattatatgaacaatatttttaattccgtaattgcaaagagccataactcatcaaaaatcatcaaaccataacggaaaagggatatgcatactagacctctcgctgatcctttcct
gi|2 : tctccctagtgagattttaaattccaaaaatgcaaagtgctgcaagtcaaaaatcatcacactaaaataaaaataggacatgcagaactatacgtcacacagatcctttccagcACCCTTTACAGTA----AGTTGCGGCAAAAT----CCAAC------A---A---A-TT------------------ATA-T-GAACAAT-ATTTTT-AATTCCGTAATT-GCAAAG-AGCCA-----TAACTC--A-TCAAAA--ATCATCAAACCATA---ACGGAAAAGGG--ATATGCAT-ACTAGACCTC-TCGCTGA-TCCTTTCCcatcaaaccataacggaaaagggatatgcatactagacctctcgctgatcctttcct
gi|3 : tctccctagtgagattttaaattccaaaaatgcaaagtgctgcaagtcaaaaatcatcacactaaaataaaaataggacatgcagaactatacgtcacacagatcctttccagcaagtatctacagacaatatttttaattctgaaaagacaaattctgtaaaatataagcaaacctgcatacaaaagtggtatgtgcaactagccatcactccaA--AGAA-GCA-C-AGCCATG-ATGTTT-AATTCTGAAAAT-----------------------C----TCAAAA--A----------GGA---AAACAAGAGGGGTATATGCATAACAAGACC-C-G-AGTGA-TCG----CA--G-CA----AGTTTCGGTTAAATCAGATTACA-G-TTGTG----GGAGGAGTTCTCTGGACAA---A-TTGTTA---------AA--TTCCAAAAAT-ACAAA-GGGT---C-TGACT---CAG--TCAAAAT-TT-A----T-CAAAAGTAt
gi|3 : TCGCAGCA----AGTTTCGGTTAAAT----CAGAT------TACAGTTG--T----G----GGA--GGAGTTCT-CTGGACAA--ATTGTTAAATTCCAAAAAT-ACAAAG-GGTC------TGACTC--AGTCAAAA--TTTATCAAA--AGT---ACATAAAAGAG--AAATGAACAACTCCACATC-AAACTGATTCTTTTTCA--G-CA----AGTTTCAGCTAAATCTAACTGAA-G-ATG-AT---GGTGGGGTTCTTTGGACAAG--A-TT-TT----------cataaaagagaaatgaacaactccacatcaaactgattctttttcagcaagtttcagctaaatctaactgaagatgatggtggggttctttggacaagattttgcaacagatggatagagagaaagcacataaacaatatgtgttccagagagtgtgatacataa
gi|4 : aagaagcacagccatgatgtttaattctgaaaatctcaaaaaggaaaacaagaggggtatatgcataacaagacccgagtgaACAGA-ATTTTT-AATTTTGAAAAT-ACAAAG-GGGC------CAACTC--AGTCTAAG--ATCATTAAACCAG--------------G--ATATGTGCAACTAGACCTC-ACAGTGA-TCTTTTCCA--G-CA---------------------ACCACA-A-ATG--T--CAAAGGAGTTATCTAGCCAAGA-A-TT-TT----------AA--TTCCATAAAC-GCAAATTGGC---TGAAACT---TAGT-AAAAAATCATCA----AACACAAATgcaacagatggatagagagaaagcacataaacaatatgtgttccagagagtgtgatacataa
gi|4 : --TGATCTTTTCCAGCA----A-------CCA--------CAAA------T---GT------CAAA----GGA--GTTA-TCT---AGCCAAG-AATTTT-AATTCCATAAAC-GCAAATTGGCTG-----AAACTT--AGTAAAAA--ATCATCAAAC---------ACAAATTGG--ATATGGGCAACTAAACCTC-ACATTTA-TCGTTTCCA--C-CA----AGTTtggatatgggcaactaaacctcacatttatcgtttccaccaagttcatccgttatccagataaacttttgttacagacagacagacagcagacagacagattgacaaacatacagacaataaaagcacaaaaacaatatgtctccctgagaggggaagacata
gi|5 : acagaatttttaattttgaaaatacaaaggggccaactcagtctaagatcattaaaccaggatatgtgcaactagacctcacagTCATCAAAC---ATTTACAAAAAAGGA--ACATGTACAACTAGACCTC--CACTGA-TCCTTCCTA--G-CA----AGTTTTTGCTAAATGCGTTCAAAT--ATTTTT-----AGGACATCTCAGGACAAT--ATTT-TT----------AA--TTCCAAAAAT-ACAAA-GGGcatccgttatccagataaacttttgttacagacagacagacagcagacagacagattgacaaacatacagacaataaaagcacaaaaacaatatgtctccctgagaggggaagacata
gi|5 : AC--TGATCCTTCCTAGCA----AGTTTTTGCTAAATGCGTTCAAA------T---ATT---TTTAGG----ACA-------TCT-CAGGACAAT-ATTTTT-AATTCCAAAAAT-ACAAAG-GGGCA-----CAGTAC--CTTCAAAGT-TTTAT--ATTCTGA---ATACAAAATGG--ATATGTGCAACTAAATCTG-ACACTTA-TTGTTTAAAGTG-CG----ATTTT--GCTAAATTTGACTTCA-G---GTAT--CAGACCAGTAATCTGGACAAGTTT-TT-TT----------CA--TCCC-AAAAT--CAAA-AGGA---GGTTACT---CTGTCAAAAAgcacagtaccttcaaagttttatattctgaatacaaaatggatatgtgcaactaaatctgacacttattgtttaaagtgcgattttgctaaatttgacttcaggtatcagaccagtaatctggacaagtttttttcatcccaaaatcaaaaggaggttactctgtcaaaaaccattgactgggaatataaatggggtatgacaactag
gi|5 : tcatcaaacatttacaaaaaaggaacatgtacaactagacctccTTGACTTCAGGTATCAGACCAGTA-ATC-T-GGACAAG-TTTTTTTCATCCC-AAAAT--CAAAA-GGAGG-----TTACTC--TGTCAAAA--ACCATTGACTGGGA---ATATAAATGGG--GTATG-ACAACTAGccattgactgggaatataaatggggtatgacaactag
gi|6 : tcatcaaacatttacaaaaaaggaacatgtacaactagacctccactgatccttcctagcaagtttttgctaaatgcgttcaaatatttttaggacatctcaggacaatatttttaattccaaaaatacaaaggggcacagtaccttcaaagttttatattctgaatacaaaatggatatgtgcaactaaatctgacacttattgtttaaagtgcgattttgctaaatAACA-ATATTAAGTATGTTGACATGTCAC-ATATTT-ATAC--TGAGCCTTCTCACCA----AGTTTCATTGAAAT----GCAAC------T---GTTGG-TTCAAG----AGA--AGAA-TCA-T-GGGCAAA-ATTTTT-AATTTTGAAATT-GCAATG-GGCCACAAGTCAACCC--AGTCAAAA--AT-ACTAAACCAGA---ACGTTAAAGAG--GTATATGCAACTAGACCTCAAAACTTA-TCCTTGCCA--G-CA----AGTTTTGGCCACATCTGACCACATACATGTATGACAGGGGAGTTCTTCAGGCAAG--A-TT-TT----------AA--TTCTGAAAAT-GCAAA-GGGT---TGTAACT---TAA--AAGAAAT-AT-A----TGCATAAATA
gi|7 : AACACATACTA-GTAATTTGTCATGG-ACTAGATTTCATAC--TAGTCCTTTTCA-------------GGCAAGTT----TCA-------------TTGA-T--ATG----TGA--A-------------------TGTTT-AATTCCAAAAAT-GCAGAT-GA-------------------CAAAACTATCAACAAACTAGA---AAGCAAAATGA--ATATGTGCAACTACACCTC-TGACTTA-TTCTTTCCA--GTCA----ACTTT-GGTTTAATCCCACGACA-G-ATG--T--CGGAAGAGTTCTCTGAACAAG--A-TT-TT----------gacgtcgtgc
gi|8 : -ATATTC-ATACACTGATCATTCCAAGCA----AGTTTTGGCTAAAT----CCAAC------A---GCAGA-T---AT----TGA--AGTT-CTT-C-GGGCAAT-ATTTTT-AATTCAGAAAAT-GCAAAG-G---G-----CAAC-----------A--ACCATCAAACCAGA---ACACAAA---G--ATATGCCCCACTTGGCATC-GCATTGA-TCTTTCCCA--T-GA----TGTTTTAGCAAAGTCTGGCCACAT--ATGTgtgacagacggacagacagaaagcacaaaaatagtatgtctaccagagagggtgagac
gi|9 : aatatcatcaaacaggaaaacaaaagggTAT--CGGAGG-GTTCTCCAGACATG--A-TT-TTTC--------AA--TTTCAAAAAT-GCAAA-GGGC---TGTAAGT---CAG--ACAAAAcagggtcaagattttgtgac
gi|9 : -C-AGACATG-ATTTTTCAATTTCAAAAAT-GCAAAG-GGCTG-----TAAGTC--AGACAAAA--ACGATTGTACCAGA---ATG-AAAAAGG--ATAATCACAGCCAGAACTC-ACAacgattgtaccagaatgaaaaaggataatcacagccagaactcacagtttcagccaaatcttaaaattttttttatgacagatgcagatagacagaaagcacaaaatcaatatgcctcacagatagggaagacacat
blockSeqs : C . AT T G T C AC . T GCGTT ACTTGTGGCTCAAGAGAAGAAGCGT AT A G AG TT GCCACAAGTCAACCCAG CT TG T TTT CAC TG GT CA AAA T GT T . TG T TACATGTATGACA T TT T G TTTTTTTTTA GT C . T AAT . TC C CAAA
blockSeqs : . . . . G T CACAGATGTTGAAGGAGTTTTTT G T G G G GTCATAACTTTC T GG C . TAC AG . TA AA . . . . CA T GATGTTG C A T . TC . A . . . . T . ATG
blockSeqs : . . . T G TGTTGATTGAAAAGAAGAAACTC G C A G G TTCGTAATTTAG . TC C . TGC AA . GG AC . . . . CG C AATGCCA C . . . A . A . . . . . . AT
blockSeqs : . . . G C TACAGTTGTGGGAGGAGTTCTCT T . G G G GCCACAACTCGA . AG T . CGC TA . CA AA . . . . CG T GATGTCG C . . . . . G . . . . . .
blockSeqs : . . G C TGTTGGTTCAAGAGAAGAATCAT G . G G T GCTGAAACTTAG . CA C . TAA AG . CA AC . . . . CA C TATGTAA C . . . . . A . . . . .
blockSeqs : . . A G AGCAGATATTGAAGTTCTTC G . G A G GGCACAGTACCT . CA T . TAC AG . TG AC . . . . TT A GTTGTGG T . . . . . A . . . . .
blockSeqs : . . T C TGTTCAAGAGAAGAAATAG T . A G G GAGGTTACTCTG . CA C . CGG AG . CA TC . . . . TG T GATGATG T . . . . . A . . . . .
blockSeqs : . . C C TATTTTTAGGACATCTCA T . G A G GCTGTAAGTCAG . CA C . AAC AG . CA AA . . . . TA C AATGTCA T . . . . . G . . . . .
blockSeqs : . T G TGTCAAAGGAGTTATCT G . A A G GCCATAACTCA . TA C . CAT TT . AA AC . . . . C T TATTTTT A . . . . . A . . .
blockSeqs : . G T TTGATATGTGAA A . A G G GTCTGACTCAG . CA C . CAA AG . TG AC . . . . G T GGTATCA T . . . . . . . .
blockSeqs : . A C AAATTATAT G . G A A GGCCAACTCAG . CA G . TAC AT . GG AC . . . . . C GATGTCG C . . . . . . . .
blockSeqs : T . T . A G G GCTGCAAG . TG C . TAT TG . TA TG . . . . . T TTATAT T . . . .
blockSeqs : G . G G T AAATAT . TA T . CGT AG . TG GC . . . . . C . . . .
blockSeqs : A . A G G TTCTG . CA C . AGC AT . TG AC . . . . . . . . .
blockSeqs : T . . G G GCAAC . CA C . CAC AA . TG G .
blockSeqs : G . . . . C . TG . . AC G . CC C .
blockSeqs : . . . . . A . C . . TG . . CA
blockSeqs : . . . . . . . . A
blockSeqs : . . .
blockSeqCons : **** GCCGCAACTCA******** **** GATGTCG****** ***
originalCons : AACACATACTAAGTANNTTGNCATGNCAC-ATATTT-ATAC--TGATCCTTCCCAGCA----AGTTTCGGCGAAAT----CCAAC------T---GTTGA-TTCAAG----AGA--AGAA-NCN-C-GGACAAG-ATTTTT-AATTCCGAAAAT-GCAAAG-GGCCG-----CAACTC--AGTCAAAA--ATCATCGAACCAGA---ACGCAAAAGGG--ATATGCGCAACTAGACCTC-ACACTGA-TCCTTTCCA--G-CA----AGTTTCGGCTAAATCCGACCACATG-ATGTAT--CGGAGGAGTTCTCCGGACAAG--A-TT-TT----------AA--TTCCGAAAAT-GCAAA-GGGC---CGTAACT---CAG--AAAAAAT-AT-A----TACACAAGTA
finalCons : AACACATACTAAGTANNTTGNCATGNCAC-ATATTT-ATAC--TGATCCTTCCCAGCA----AGTTTCGGCGAAAT----CCAAC------T---GTTGA-TTCAAG----AGA--AGAA-NCN-C-GGACAAG-ATTTTT-AATTCCGAAAAT-GCAAAG-GGCCGCAACTCA--------TCAAAA--ATCATCGAACCAGA---ACGCAAAAGGG--ATATGCGCAACTAGACCTC-ACACTGA-TCCTTTCCA--G-CA----AGTTTCGGCTAAATCCGACCACAGATGTCG------GAGGAGTTCTCCGGACAAG--A-TT-TT----------AA--TTCCGAAAAT-GCAAA-GGGC---CGTAACT---CAG--AAAAAAT-AT-A----TACACAAGTA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GGATAAGATTTTGTGACAGATGGCCAGACAGTTAGACAGAAAGCACAAAAACAATGTTGAGAGAGGTTACATAATT
Unaligned ( gi|17 ): GATGGACTTAAGGACATAATGGACGGACAGAAGAAAAACACAAAAATAATATTTCTTCCTGAGAGGGGGG
Unaligned ( gi|20 ): CATATGTTGAGGAGTTACCTAGACAAGATTTGTGACAGACAGACAGAC
Unaligned ( gi|21 ): ACAGATGTCGGAGGAGTTGCCTAACAAAATTTTGAGACAGAT
Alignments
lowQualScore : 1 1 11 1 444444444444444444444444444444444444444444 33333333333333333333333333 3333333333333333333333333 1111111111 1 11 33333333
lowQualScore : 5 5 22 1 66 3 8 66 7777 0 3 99999 333333333333333333333333333333333333333333 88 2 2 3 22 22 66666666666666666666666666 4 1 66 3 333 333 33 22 33 222 2 33 2 5555 1111111111111111111111111 2 33 2 999999999 2 11 55 4 4 5555555555 44 2 3 3 777 0 777 00 8 00000000 0
lowQualScore : . . .. . .. . . .. .... . . ..... .......................................... .. . . . .. .. .......................... . . .. . ... ... .. .. .. ... . .. . .... ......................... . .. . ......... . .. .. . . .......... .. . . . ... . ... .. . ........ .
lowQualScore : 0 5 00 0 00 3 0 99 7777 8 1 44444 777777777777777777777777777777777777777777 11 2 2 7 77 88 00000000000000000000000000 2 1 66 2 555 000 33 99 11 888 4 77 7 7777 8888888888888888888888888 7 44 5 666666666 7 22 66 7 7 9999999999 22 6 3 3 000 1 888 66 0 55555555 2
consensus : AACACATACTAAGTANNTTGNCATGNCAC-ATATTT-ATAC--TGATCCTTCCCAGCA----AGTTTCGGCGAAAT----CCAAC------T---GTTGA-TTCAAG----AGA--AGAAN-CN-C-GGACAAG-ATTTTT-AA-TTCCGAAAAT-GCAAAG-GGCCGCA--ACT--C-A------T---CAAAA-ATCATCGAACCAGA---ACGCAAAAGGG--ATATGCGCAACTAGACCTC-ACACTGATCCTTTC-CA--G-CA----AGTTTC-----------------------GGCTAAATCCGACCAC--A-GATGT----C---GGAGGAGTTCTCCGGACAAG--A-TT-TT----------AA--TTCCGAAAAT-GCAAA-GGGC---CGTAACT---CAG--AAAAAAT-AT-A----TACACAAGTA
Reference ( family-333 ) : AACACATACTAAGTANNTTGNCATGNCAC-ATATTT-ATAC--TGATCCTTCCCAGCA----AGTTTCGGCGAAAT----CCAAC------T---GTTGA-TTCAAG----AGA--AGAAN-CN-C-GGACAAG-ATTTTT-AA-TTCCGAAAAT-GCAAAG-GGCCGCA--ACT--C-A------T---CAAAA-ATCATCGAACCAGA---ACGCAAAAGGG--ATATGCGCAACTAGACCTC-ACACTGATCCTTTC-CA--G-CA----AGTTTC-----------------------GGCTAAATCCGACCAC--A-GATGT----C---GGAGGAGTTCTCCGGACAAG--A-TT-TT----------AA--TTCCGAAAAT-GCAAA-GGGC---CGTAACT---CAG--AAAAAAT-AT-A----TACACAAGTA
gi|1 : -C-AGGCAAA-ATGTTT-CA-TTCAGAAAAT-TAACAC-AGCCTCC--ACT--C-T------TGGCCAAAA-ATCAAAGAACAAAA---ATGCAAAATGT--ACATGCAAAAGGGAGCTTT-AGGCTTATCATTCC-AA--G-TATTTTAATTTT-----------------------AGTGAATTCCAACT-C--ATGAT-T----CAAAAGAAGAAACAT--GGCCAAG--A-TTCTT----------TA--TTTT-AAACTAGAAAA-GGGT---CATAACTTTCCCG--AAAA
gi|1 : TTT-AGGC--TTATCATTCCAAGTATTTTAATTTTAGTGAATT----CCAAC------T---CATGA-TTCAAA----AGA--AGAAA-CA-T-GGCCAAG-ATTCTT-TA-TTTT-AAACTAGAAAAG-GGTCATA--ACTTTC--------C---CGAAA-ATCATTGTACTGGA---ACACATATGAT--ACAAGCATAACTAAACCTC-AAACTGATCCTTTC-CC--C-TA----AGTTTT-----------------------GACTAAATTTGACCAC--A-GATGT----T---GAAGGAGTTTTTTGCACAAG--C-TT-TT----------TA--TTTCCAAAAT-GCAAT-GGtcattgtactggaacacatatgatacaagcataactaaacctcaaactgatcctttcccctaagttttgactaaatttgaccacagatgttgaaggagttttttgcacaagctttttatttccaaaatgcaatggaaatatttcaaaatcaaggaaacagatt
gi|1 : caggcaaaatgtttcattcagaaaattaacacagcctccactcttggccaaaaatcaaagaacaaaaatgcaaaatgtacatgcaaaagggagcAC--TGATCCTTTCCCCTA----AGTTTTGACTAAAT----TTGACCACAGAT---GTTGA-----------AGG--AGTTT-TT-T-GCACAAG-CTTTTT-AT-TTCC-AAAAT-GCAATG-G-----A--AAT--A-T------T---TCAAA-ATCAAGGAAACAGA---aaatatttcaaaatcaaggaaacagatt
gi|10 : caggcaaaatgtttcattcagaaaattaacacagcctccactcttggccaaaaatcaaagaacaaaaatgcaaaatgtacatgcaaaagggagctttaggcttatcattccaagtattttaattttagtgaattccaactcatgattcaaaagaagaaacatggccaagattctttattttaaactagaaaagggtcataactttcccgaaaatcattgtactggaacacatatgatacaagcataactaaacctcaaGATCCTTCC-CA--G-CA----AGTTTC-----------------------AGTTAAATCTGACCAC--A-AATGC----C---AAAGGAATTCCCCAGACAAG--A-TT-TTTTTTTTTTTAAA--TACCAAGAAT-GCAAT-GGGCAATCAGAACA---CAA--AAGGGAT-AT-GTAATTACACAAGTAtt
gi|11 : atacaaattaataa-ATAT--GGGTCCTTCTCAGTA----AGTGTCATTGAAAT----GCAGC------T---GTTGA-TTGAAA----AGA--AGAAA-CT-C-AGACACT-AT------A-TTCCGGAAAT-GCAAAG-GTTCGTA--ATT--T-AG-----T---CGAAA-ATAATC-AGTCCGA---ATACAAAAGGG--ATAGGTACAAattggtaaactttctagttttca
gi|12 : cgttgccacatgcattattggatgccAAA-ATCATTCAACTAGA---ATGCAAA-GGG--ATATGGGCAACTAGAGCTC-ACACTGAACCTACC-CA--G-CA----AGTTTCACTAATCCTTTTCAGCAATTTTCGGCTAAATCTAACCAC--A-GAT
gi|13 : TTCAGCGAAAT----CCAAC------T---GTT-----CAAG----AGA--AGAAA-TA-G-GGACAAATATCTTT-AA-TTTTGAAAAT-GCAAAT-GGCCACA--ACT--CGA------T---CAA-----TATAGAAACAGA---GCGCAAGAAGG--ATATGCACGACACGACCTC-AAACTGATCCATTC-Cttttacaattttgtgacagactgacgaaaagcacaaaaa
gi|14 : tttagAGATCTGACCAC--A-GATGT----C---GGAAGAGTTCTACGGACAAG--A-TT-TT----------AA--TTCCAACAAT-TTAAA-GAGC---TGCACCT---CAG--t
gi|15 : C--A-TATGT----A---AGAGAAGATCTCCGGGCAAG--A-TT-TT----------tcttgcaaaatgtttaaaag
gi|18 : A----AGCTTCAGTGAAAT----GCAACACT---T---GT-GG-CTCAAG----AGA--AGAAG-CG-T-GGATAAG-ATTTgtcagactgaaatctctaaaacaatatgtccctgggaaggggagacata
gi|19 : AGTTGTCCAGACAAG--A-TT-TT----------AAGTTTAC-AAAAT-GCAAA-GGGT---CGAAAC
gi|2 : AG-ATTTTA-AA-TTCCAAAAAT-GCAAAG-TGCTGCA--A------G------T---CAAAA-ATCATCACACTAAA---ATAAAAATAGG--ACATGCAGAACTATACGTC-ACACAGATCCTTTC-CA--G-CA----AGTATC-----------------------
gi|2 : tctccctagtgA--AGTAT-CTAC-AGACAAT-ATTTTT-AA-TTCTGAAAAG-ACAAA------------TT--C-T------G---TAAAATATAAGCAAACCTGC---ATACAAAAGTG--GTATGTGCAACTAGCCATC-ACTCCAACCCTTTA-CA--G-TA----AGTTGC-----------------------GGCAAAATCCAAC------------------------AAATTATATGAACAAT--ATTT-TT----------AA--TTCCGTAATT-GCAAA-GAGC---CATAACT---CAT--CAAAAAT-tacagacaatatttttaattctgaaaagacaaattctgtaaaatataagcaaacctgcatacaaaagtggtatgtgcaactagccatcactccaaccctttacagtaagttgcggcaaaatccaacaaattatatgaacaatatttttaattccgtaattgcaaagagccataactcatcaaaaatcatcaaaccataacggaaaagggatatgcatactagacctctcgctgatcctttcct
gi|2 : tctccctagtgagattttaaattccaaaaatgcaaagtgctgcaagtcaaaaatcatcacactaaaataaaaataggacatgcagaactatacgtcacacagatcctttccagcACCCTTTACAGTA----AGTTGCGGCAAAAT----CCAAC------A---A---A-TT-----------------A-TA-T-GAACAAT-ATTTTT-AA-TTCCGTAATT-GCAAAG-AGCCATA--ACT--C-A------T---CAAAA-ATCATCAAACCATA---ACGGAAAAGGG--ATATGCAT-ACTAGACCTC-TCGCTGATCCTTTC-Ccatcaaaccataacggaaaagggatatgcatactagacctctcgctgatcctttcct
gi|21 : tctccctagtgagattttaaattccaaaaatgcaaagtgctgcaagtcaaaaatcatcacactaaaataaaaataggacatgcagaactatacgtcacacagatcctttccagcaagtatctacagacaatatttttaattctgaaaagacaaattctgtaaaatataagcaaacctgcatacaaaagtggtatgtgcaactagccatcactccaAC--A-GATGT----C---GGAGGAGTT-GCCTAACAAA--A-TT-TT----------GA--t
gi|3 : A--AGAAG-CA-C-AGCCATG-ATGTTT-AA-TTCTGAAAAT----------------------C--------T---CAAAA-A----------GGA---AAACAAGAGGGGTATATGCATAACAAGACC-C-G-AGTGATCG-----CA--G-CA----AGTTTC-----------------------GGTTAAATCAGATTAC--A-GTTGT----G---GGAGGAGTTCTCTGGACAA---A-TTGTTA---------AA--TTCCAAAAAT-ACAAA-GGGT---C-TGACT---CAG--TCAAAAT-TT-A----T-CAAAAGTAgacagat
gi|3 : TCGCAGCA----AGTTTCGGTTAAAT----CAGAT------TACAGTTG---T---G----GGA--GGAGTTCT-CTGGACAA--ATTGTT-AAATTCCAAAAAT-ACAAAG-GGTC-TG--ACT--C-AG-----T---CAAAA-TTTATCAAA--AGT---ACATAAAAGAG--AAATGAACAACTCCACATC-AAACTGATTCTTTTTCA--G-CA----AGTTTC-----------------------AGCTAAATCTAACTGA--A-GATGA----T---GGTGGGGTTCTTTGGACAAG--A-TT-TT----------cataaaagagaaatgaacaactccacatcaaactgattctttttcagcaagtttcagctaaatctaactgaagatgatggtggggttctttggacaagattttgcaacagatggatagagagaaagcacataaacaatatgtgttccagagagtgtgatacataa
gi|4 : aagaagcacagccatgatgtttaattctgaaaatctcaaaaaggaaaacaagaggggtatatgcataacaagacccgagtgaACAGA-ATTTTT-AA-TTTTGAAAAT-ACAAAG-GGGC-CA--ACT--C-AG-----T---CTAAG-ATCATTAAACCAG--------------G--ATATGTGCAACTAGACCTC-ACAGTGATCTTTTC-CA--G-CA--------------------------------------------ACCAC--A-AATGT----C---AAAGGAGTTATCTAGCCAAGA-A-TT-TT----------AA--TTCCATAAAC-GCAAATTGGC---TGAAACT---TAGT-AAAAAATCATCA----AACACAAATgcaacagatggatagagagaaagcacataaacaatatgtgttccagagagtgtgatacataa
gi|4 : --TGATCTTTTCCAGCA----A-------CCA--------CAAA------T---GT------CAAA----GGA--GTTAT-CT---AGCCAAG-AATTTT-AA-TTCCATAAAC-GCAAATTGGCTGAA--ACT--T-AG-----T---AAAAA-ATCATCAAAC---------ACAAATTGG--ATATGGGCAACTAAACCTC-ACATTTATCGTTTC-CA--C-CA----AGTTtggatatgggcaactaaacctcacatttatcgtttccaccaagttcatccgttatccagataaacttttgttacagacagacagacagcagacagacagattgacaaacatacagacaataaaagcacaaaaacaatatgtctccctgagaggggaagacata
gi|5 : acagaatttttaattttgaaaatacaaaggggccaactcagtctaagatcattaaaccaggatatgtgcaactagacctcacagTCATCAAAC---ATTTACAAAAAAGGA--ACATGTACAACTAGACCTC--CACTGATCCTTCC-TA--G-CA----AGTTTT-----------------------TGCTAAATGCGTTCAA--A-TAT-T----T---TTAGGACATCTCAGGACAAT--ATTT-TT----------AA--TTCCAAAAAT-ACAAA-GGGcatccgttatccagataaacttttgttacagacagacagacagcagacagacagattgacaaacatacagacaataaaagcacaaaaacaatatgtctccctgagaggggaagacata
gi|5 : AC--TGATCCTTCCTAGCA----AGTTTTTGCTAAATGCGTTCAAA------T---ATT---TTTAGG----ACA------T-CT-CAGGACAAT-ATTTTT-AA-TTCCAAAAAT-ACAAAG-GGGCACAGTAC---C-T------T---CAAAGTTTTAT--ATTCTGA---ATACAAAATGG--ATATGTGCAACTAAATCTG-ACACTTATTGTTTA-AAGTG-CG----ATTTT-------------------------GCTAAATTTGACTTC--A-GGTAT----C---AGACCAGTAATCTGGACAAGTTT-TT-TT----------CA--TCCC-AAAAT--CAAA-AGGA---GGTTACT---CTGTCAAAAAgcacagtaccttcaaagttttatattctgaatacaaaatggatatgtgcaactaaatctgacacttattgtttaaagtgcgattttgctaaatttgacttcaggtatcagaccagtaatctggacaagtttttttcatcccaaaatcaaaaggaggttactctgtcaaaaaccattgactgggaatataaatggggtatgacaactag
gi|5 : tcatcaaacatttacaaaaaaggaacatgtacaactagacctccTTGACTTCAGGTATCAGACCAGTAA-TC-T-GGACAAGTTTTTTT-CA-TCCC-AAAAT--CAAAA-GGAGGTT--ACT--CTG------T---CAAAA-ACCATTGACTGGGA---ATATAAATGGG--GTATG-ACAACTAGccattgactgggaatataaatggggtatgacaactag
gi|6 : tcatcaaacatttacaaaaaaggaacatgtacaactagacctccactgatccttcctagcaagtttttgctaaatgcgttcaaatatttttaggacatctcaggacaatatttttaattccaaaaatacaaaggggcacagtaccttcaaagttttatattctgaatacaaaatggatatgtgcaactaaatctgacacttattgtttaaagtgcgattttgctaaatAACA-ATATTAAGTATGTTGACATGTCAC-ATATTT-ATAC--TGAGCCTTCTCACCA----AGTTTCATTGAAAT----GCAAC------T---GTTGG-TTCAAG----AGA--AGAAT-CA-T-GGGCAAA-ATTTTT-AA-TTTTGAAATT-GCAATG-GGCCACA--AGT--C-AACCCAGT---CAAAA-AT-ACTAAACCAGA---ACGTTAAAGAG--GTATATGCAACTAGACCTCAAAACTTATCCTTGC-CA--G-CA----AGTTTT-----------------------GGCCACATCTGACCACATA-CATGTATGAC---AGGGGAGTTCTTCAGGCAAG--A-TT-TT----------AA--TTCTGAAAAT-GCAAA-GGGT---TGTAACT---TAA--AAGAAAT-AT-A----TGCATAAATA
gi|7 : AACACATACTA-GTAATTTGTCATGG-ACTAGATTTCATAC--TAGTCCTTTTCA-------------GGCAAGTT----TCA-------------TTGA-T--ATG----TGA--A-------------------TGTTT-AA-TTCCAAAAAT-GCAGAT-GA-CAAA--ACT----A------T---CAA--------CAAACTAGA---AAGCAAAATGA--ATATGTGCAACTACACCTC-TGACTTATTCTTTC-CA--GTCA----ACTTT------------------------GGTTTAATCCCACGAC--A-GATGT----C---GGAAGAGTTCTCTGAACAAG--A-TT-TT----------gacgtcgtgc
gi|8 : -ATATTC-ATACACTGATCATTCCAAGCA----AGTTTTGGCTAAAT----CCAAC------A---GCAGA-T---AT----TGA--AGTTC-TT-C-GGGCAAT-ATTTTT-AA-TTCAGAAAAT-GCAAAG-G---GCA--AC--------------------A-ACCATCAAACCAGA---ACACAAA---G--ATATGCCCCACTTGGCATC-GCATTGATCTTTCC-CA--T-GA----TGTTTT-----------------------AGCAAAGTCTGGCCAC--A-TATGT----C-----AGG-GT--------CAAG--A-TT-TT----------gtgacagacggacagacagaaagcacaaaaatagtatgtctaccagagagggtgagac
gi|9 : aatatcatcaaacaggaaaacaaaagggTAT----C---GGAGG-GTTCTCCAGACATG--A-TT-TTTC--------AA--TTTCAAAAAT-GCAAA-GGGC---TGTAAGT---CAG--ACAAAAgtgac
gi|9 : -C-AGACATG-ATTTTTCAA-TTTCAAAAAT-GCAAAG-GGCTGTA--AGT--C-A------GA--CAAAA-ACGATTGTACCAGA---ATG-AAAAAGG--ATAATCACAGCCAGAACTC-ACAacgattgtaccagaatgaaaaaggataatcacagccagaactcacagtttcagccaaatcttaaaattttttttatgacagatgcagatagacagaaagcacaaaatcaatatgcctcacagatagggaagacacat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GGATAAGATTTTGTGACAGATGGCCAGACAGTTAGACAGAAAGCACAAAAACAATGTTGAGAGAGGTTACATAATT
Unaligned ( gi|17 ): GATGGACTTAAGGACATAATGGACGGACAGAAGAAAAACACAAAAATAATATTTCTTCCTGAGAGGGGGG
Unaligned ( gi|20 ): CATATGTTGAGGAGTTACCTAGACAAGATTTGTGACAGACAGACAGAC