lowQualScore : 33333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 2 111 1111 8888888 11 11 1 1 22 1111 11 111 111 11111 1 11 333333 11 11 1 1 44444444 111 1 33333333333333333 111 111 1 2222222222 333333333333333333333 1 111111111 11 2222222 1111 44444444444444444444444444444444444444 555555555555555555555555 1111 1 111 88888888888888888888888888888888888888888 22222222222 444444444 11111 111111 22222222 2222222222222 11 1 1111 1 1111 00000000000000000000000000000000000000000000000000000000000000000000000000000000 1 1111 33333333333 1111111111 1111 11111111 2222222222 2222222222222222222222222222 1
lowQualScore : 5 0 5 000 7777 1111111 22 33 0 1 00 3 7 5 5 66 3 8888 1 66 444 5 3 000 55555 7 99 3 222222 44 4 8 11 1 0 6 2 55 5 0 11111111 8 444 1 1 88888888888888888 111 111 5 5555555555 777777777777777777777 2 2 2 5 7 11 66 1 777777777 8 4 11 9999999 11 5555 999 3 99999999999999999999999999999999999999 8 000000000000000000000000 8 1 2 4 2 4 3 2 4444 6 7 1 000 2 22222222222222222222222222222222222222222 6 0 0 1 77777777777 1 6 4 888888888 5 77777 5 7 99 000000 1 33333333 2 5 8888888888888 00 5 2 0000 1 3 3 66 1 0000 2 66666666666666666666666666666666666666666666666666666666666666666666666666666666 6 0 5 0 6 66 5 0000 1 5 5 7 66 99999999999 0000000000 0 5555 77 77 6 7 22222222 2 5 6 6 3333333333 4 4 555 2 6666666666666666666666666666 4 1
lowQualScore : . . . ... .... ....... .. .. . . .. . . . . .. . .... . .. ... . . ... ..... . .. . ...... .. . . .. . . . . .. . . ........ . ... . . ................. ... ... . .......... ..................... . . . . . .. .. . ......... . . .. ....... .. .... ... . ...................................... . ........................ . . . . . . . . .... . . . ... . ......................................... . . . . ........... . . . ......... . ..... . . .. ...... . ........ . . ............. .. . . .... . . . .. . .... . ................................................................................ . . . . . .. . .... . . . . .. ........... .......... . .... .. .. . . ........ . . . . .......... . . ... . ............................ . .
lowQualScore : 7 3 7 000 9999 6666666 99 88 4 5 33 5 0 0 0 88 3 7777 9 11 333 7 9 000 99999 0 22 9 888888 55 4 0 66 0 0 0 8 22 2 8 44444444 0 000 2 0 00000000000000000 777 777 0 5555555555 555555555555555555555 6 5 7 8 7 99 11 8 888888888 9 1 55 2222222 88 6666 111 4 00000000000000000000000000000000000000 4 222222222222222222222222 4 5 5 4 7 4 4 2 9999 0 3 4 000 1 11111111111111111111111111111111111111111 0 1 7 7 11111111111 7 0 1 111111111 0 55555 0 5 33 222222 0 77777777 5 0 7777777777777 00 3 5 7777 4 4 4 99 8 6666 7 44444444444444444444444444444444444444444444444444444444444444444444444444444444 0 0 0 4 0 99 1 6666 4 7 7 9 77 99999999999 4444444444 7 3333 99 99 0 3 22222222 5 0 7 7 0000000000 4 1 222 8 9999999999999999999999999999 0 4
consensus : ACACTGACCCAAAA-TGAAAAC-TTTA---C----ACTTTATA---A-GTTTGAATATTTCTTTTGCTAAC--ATACATGTTCGGAAACGTGTTATACATGGCTATCAGGATTTAATTGCGGATAATCATTATGCA-ATTTTTTTTCGAAATTTACGAA-GTATTCATGCGTCCGAGCACAAA---AA--A--CGTTTTCCTTA-CTTTGCACGTGCGCAACATCCGGTTTTTCACTTACAGGTTTNA-CACCGACAAGTAATCATTTGTTGCTTGGCACAGATAAAAAAA---CTTAAAT-TTGT---TTNAAAAA--AA--CAC--------TTTTATTT---AGCG---ATGCCACGTCTTTCCGAAACTGAGAGAAATCAGGCTATCGGTATGCTCCGGACCG--GGTCAT--TG---GTAAATACCGTTGCNCGTCATTTTGGCTGTTCCAGATAGACTATTCATATTCTTGCGAACCGGTA--CAATACTACTGGAT---------ATGTCA-GAGATCGTGTCAGACCCGGTCGCGTACGTGCAACAAC-GTTAC--GTACTCATCGCGCT------GTTACGTTGAC-T-CACC---T--AC--GTAATCGTTTCTTACCTGCAAC-CGG--TA-CTCCTTGGCGTTN--CGGTGTTCATGCACAGACGATCATAAA-CCGTT-TGAGACAAAANC-GTGTTCCAATTCGTGCTCGTCGGCCATACACTGGTCA---GNTTCCGACAGCGCGCCACAGAGCTT--------T--------T---A------------TGGGCACGACGTCATTTGCAATACACG-----------CGAAACCAGTGGCAATGCCTCTGTAT-------CCC-C-----GAGC-CTGAACCCCATAGAACACGTATGGAATG--AAT-TGGGTCGGAGG---GTCAGGTCCAAT-CATCA---AACTGATACCATA-NACGACCTCCGAAATGCACTTCTGTTGGAATGGCAACGTATTCCAAACACGCT--CATTCAACGTTA----CGTAAGTTCATAGAGA--ACGT-TTC-GGAATG-ATT--T-ATG------------------------AAACGGGA-------------------GTCCACACTGGTTACTGACGTTTT-AAAAA-AATCAGTTATTGCACTCA--GTCAGCACTTTATG----TCTTTTTCAAATGTTACGTGATCA-TTTTCAT-TTTTCTGGAATTTTCATTTTGACCCTTCTTCACTTAATT----GNTTAGAAAAAA---A-CA---TGCGATGTCTGA--TTT--TTT--CCAGTAAATTACACAGACACATTAATA--TAGCCATAAAGCTTCGATGAAA-AC-TT-TTA-ANC-C-TGAACATATATTTGTCAGCAAAAGAGATACT------TTT-AAG----T---CGA--TGTAAAGTTTTCA-TTTTGGGTCAGTGTA
Reference ( gi|2 ) : ACACTGACCCAAAA-TGATAAC-TTTA---C----ACTTTATATACATGTTTGAATATTTCTTTTGTTAAC--ATACATATTCCAAAATGTGTTTTACATGGCTATCCGAATTTAATTGCGATTAATCATCATGCA-ATTTTTTTTAAAAATTTACAAA-GTATTCATGCGTCCAAGCACAAA---AA--A--CGTATTCCTTC-CTTTGCATGTGCGCAACAACAGGTTTTTCACTTACAGGTTTAA-CACCAACAAGTACTCATTCGTTGCTTAACACATATAAAAAAA---CTTAAAT-TTGT---TTTAAAAA--A---CAC--------TTTTATTT---AGCG---ATGCCACGTCTTTCTTAAACTGAGAGAAATAAGACCCTTTGTATGCTCCAGTCTG--GGTCAT--TG---GTAAATACCGTTGCACGTCATTTTGGCTGTTCCAGATAGACTATTTATATTCTAGCAAACCGGTA--CAATACTACTGGAT---------ATGTCA-GAGATCATGTCAGACTTGGTCACTTAGGTGCAACAAT-ATTAC--ATACTCATTGTGCT------GTTATTTTGAC-T-CACC---G--AT--GTAATCATTTCTTACCTGCAACACA---TA-CTACTTGGCATGT--CGATATTCATGCACAGACGATCATAAA-CTGTT-TGAAATAAAAAC-ATATTCCAATTCGTGTTCGTCGGCCCTACACTGGTCA---GATTCCGACAGCGCGCCACTGAGTTT--------T--------T---A------------TGGGCACAACGTCATTTGCAATACATG-----------CAAAACCAGTGGCAATGCCTTTATA--------ACC-C-----GAGC-CTGAACCCCATAGAACACATACAGAATG--AAT-TGGATCAAATG---GTCAGGTTCAAA-CATCA---AAATAATACCATA-CACTATCTCCGAAATGCACTTCTGTTGGAATGGCAACATATTTCAAACACGCT--CATTTAACGTTA----CGTAAGTTCACAGAG--------------------------A--------------------------AAACGGGA-------------------GTCCACACTGGTTACTGATGTTTT-AAAAA-AATCAGTTATTGCACTTA--GCCAGCACTTTATG----TCTTTTTCAAATGTTACATGATCA-TTTTCAT-TGTTCTGGAATTTTCATTTTGACCCTTCTTCACTTAATT----GATCAGGAAAAA---A-CA---TGCGATGTCTAA--TTT--TTT--CCAATAAATTATACAGACACATTAATA--TAGCCATAAAGCTTCAATGAAA-AC-TT-TTATAGC-C-TGAATATATATTTATCAGCAAAAGAGACACT------TTT-AAG----T---CAA--TGTAAAGTTTTCA-TTTTAGGTCAGTGTA
gi|1 : ACACTGACCCAAAA-TAAAAAC-TTAA---C----ACGTTATAT----GTTTAAATATTTCTTCTGCTAAC--ATACATGTTCGGAAACGTGTTATACATGGCTATCAGGATTCAATTGCGGATAATCATTACG---ATTTTTTTTCATAATTTCCGAA-TTATGCATGCATCCGAGCACAAA---AATAA--CGTTTTCCTTA-CTTTGGACGTGCGCAACATCCG-TTTTTTA---------TCGA-CACCGACAAGTAATCATTCGTTGCTTAGCGCAGATAAAAAA----CTTAAAT-TTGT---TTAAAAAA--AA--CAC--------TTTTACTT---AGTG---ATGCCACGTCTTTCTGAAACTGAGTGAAGTCGGGCTATTGGTAT---CCGGGACG--GGTCAT--TG---GTAAATACCGTTTCTC-TTATTTTGGCTGTTCCAGATAGACTATTCATATTCTTGCGAACCGGTA--CAACACTACTGGAT---------ATGTCA-GAGATAGTGTCAAACCCGGTTATGTATGTTCAA-AATCGTTAC--GTACTCATCGCGAT------GTTACGTTGATATACACC---C--AC--GTAATTGTTTCTTACTTGCAACGAG---TA-CTCCT--GTATTTTACGATGTTCACGTACAGACGAGCATAAA-CTGTT-TGAAACAAAAAC-CTGTTCCATTTCGTGCTCGTCGCACATACACTGGCCA---GTCTCCGACAGCGCGTCA--GAGATTCCAGACTAT--------T---A------------TGAGCACGACGTC-------ATACACG-----------CGAAATCGGTGACAATGCCTCTGTAT-------CCC-C-----AAGC-CTGAACCTCATAGAACACCTATGGAATG--AAT-TGGGTCAGAGG---GTAATGTCTAAT-CATCA---AATTGTTACCGTA-AATGACCT-TGAAATGCACTTCTGTTGTAATGGCAATGTATTCCAAACACGCT--CGTTTAACGTTA----CGTAGGTTCATAGAGAGTACGTGTTCCGGAATGCATTTGTTA--------------------------AAAC-GGA-------------------GTCGACACTGGTAACTGACGTTTTAAAAAA-AATCAGTTATTGCAGTTACTGTCAGTACTTTTTG----TCTTTTTCAAATGTTAAATGATCA-TTTTCAT-TTTTCATCAATTTTCATTTTGACCCTTCTTCACTTAATT----G-TTAAAAAAAACCCA-CAACTTGCGATGTCTGA--TAT--TTC--CCAGTAAATTACACAGACACATAATTA--TAGCCATAAAGCTTCGATGAAA-ACTTT-TTAAATC-C-TGAATATACATTAATCAGCAAACGAGATACT------TTTAAAG----T---CGA--TCTAAAGTTTTCA-TTTTGGGTCAGTGTA
gi|1 : cACACTGACCCAAAA-TGAAAAC-TTTAGATCG---ACTTTAAA----------AGTATCTCGTTTGCTGATTAATGTATATTCt
gi|6 : cacactgacccaaaataaaaacttaacacgttatatgtttaaatatttcttctgctaacatacatgttcggaaacgtgttatacatggctatcaggattcaattgcggataatcattacgattttttttcataatttccgaattatgcatgcatccgagcacaaaaataacgttttccttactttggacgtgcgcaacatccgttttttatcgacaccgacaagtaatcattcgttgcttagcgcagataaaaaacttaaatttgtttaaaaaaaacacttttacttagtgatgccacgtctttctgaaactgagtgaagtcgggctattggtatccgggacgggtcattggtaaataccgtttctcttattttggctgttccagatagactattcatattcttgcgaaccggtacaacactactggatatgtcagagatagtgtcaaacccggttatgtatgttcaaaatcgttacgtactcatcgcgatgttacgttgatatacacccacgtaattgtttcttacttgcaacgagtactcctgtattttacgatgttcacgtacagacgagcataaactgtttgaaacaaaaacctgttccatttcgtgctcgtcgcacatacactggccagtctccgacagcgcgtcagagattccagactattatgagcacgacgtcatacacgcgaaatcggtgacaatgcctctgtatccccaagcctgaacctcatagaacacctatggaatgaattgggtcagagggtaatgtctaatcatcaaattgttaccgtaaatgaccttgaaatgcacttctgttgtaatggcaatgtattccaaacacgctcgtttaacgttacgtaggttcatagagagtacgtgttccggaatgcatttgttaaaacggagtcgacactggtaactgacgttttaaaaaaaatcagttattgcagttactgtcagtactttttgtctttttcaaatgttaaatgatcattttcatttttcatcaattttcattttgacccttcttcacttaattgttaaaaaaaacccacaacttgcgatgtctgatatttcccagtaaattacacagacacataattatagccataaagcttcgatgaaaactttttaaatcctACACTGACCCAAAA-TAAAAAC-TTTA---C----ACTTAATAT----GTTTGAATATTTCCTTTGTTAAC--ATACATGTTCAAAAGCGTGTTATACAT-----------------TGCGGATAATCATTATGCA-TTTTTTCCTCAAAATTT-CAGATGTATGTTTGCGTCCGAGCACAAA---CA--CTCCGTTTTCCTTA-CTTTGCACGTGTGCAACATCTGGTTTTTCACTAATAGGATTTA-CACCG-CGAGTAATCTTTTATTGCTTAGCACAGATAGAAAA----CTTTAAT-TTGT---TTAAAAAA--AAA-CAC--------TTTCATTA---AGCG---ATCCCACATCTTTCCGAAACTGAGAGAAATCCGACTATTGGTATGCTCC-----G--GGCCA--------GTAAATACCGTTGCATGTCATTTTGGCTGTTCCAGATAGACTATTCATACTCTTGCGA----------------GCTTGAT---------ATGTCA-GAGATCGTGTCAGGCCCGGTCACATACGTGCAACAAC-GTTACGAATA--CATTG-------------AT----A----CACC---T--AA--GTAATCGTTTCTTACCTGCAACTAG---TA-CTCCTTGTCGTTA--CGGTATTCATGCTTACACGATCATAAA-CCGGT-TGAAACAAAACC-GTGTTCCAATTCGTGCTCTTCGGCCATACACTGGTCAGATGATTCCGACAGCGCGCGACATAGCTTCCAGA---T--------TGGAA------------TGGGCACGATGCCATGTGAAATACATGCGAAATACACTCGAAATTAGTGGCAATGCCTCTGTAT-------CCC-C-----GAGC-at
gi|5 : ACACTGACCCAAAA-TGA-AACTTTTA---CACCGACTTCAAA----------AATGTTTCTTTTGCTGATAAATATATATT
gi|17 : aaaacttttatttaaggaggccacgtctttccgaaaatgagagaaatcaggtctgggtcataccgataaataccgttgtacgtcattcttgctgtttcagatagactatctatattcttgcgaaccggtacactactactggatatgttaagcgatcgtgtcagacccggtcgcgtacgtgcaacaacgtcacgttctcatcgcgctattgcgttgactcacctacgtaatagtttttacctgcaacacgtactcctttgcgtgtcggtattcatgcacagacgatcataaaccgtttgagataaaaacgtgttccaattcgtgctcgttggctctacactggtcagattcagacagcgcgcaaccgatctgttatgggcacgacgttatttgaaatatacacgaaaccagtggcaatgtctctatagcacgatctccgaaatgcacttctgttcgaaaggcaacgtattttaaacacgctaatttagcgttccgtaaggtcacagagatgatgaattcaggaatgcattcgtaaaaacggaatttacactggttactgacgttttaagaaaatcagttattgcacttagccagcactttatgtatttttcaaatgttacatggtcattttcattgctccggaattttcattttgacccttcttcaccttattaatcagaaaaaaacatgcgatgtcagatgttttccagtaaataacacagcacattaatataggcatagagcttcaatgagagctgttttagcctttCACTGACCCAAAAATGAAAAC-TTTA---C----ACTTTA---A-ATGTTTGAATATTTCTTTTGCTAAC--AAACATGTCCTGAAACGTGTTATACATGGTTATCGGGATTTATTTGCGGATAATCATTATGCATTTTTTTTTTCGAAATTTA-AAA-GTATTCATGCATCCGAGCAC-AA---AA--A--CGTTTTCCTTA-CTTTAGATGagttt
gi|20 : CACTGACCAAAAA-TGAAAAC-ATTA---C----ACTTTAT----ATGTATGAATA-----TTTATTAAC--A----------GAGATGTGTTACACATGGCTATCAGGATTTAATTG
gi|14 : TGAACAAAAA-TGAAAAC-TTTA---C----GCTTTA---A-ACGTTGGAATATTTCTTTTGTTAAC--ATACATATTTCAAAACGTGTTATACATGGCTATCAGAATTTAATTGCGGATAATCATTATGTA-ATTATTTTTCGAAATTTACGAA-GCATTAATGCGCCCGAGCACAAA---AA--A--TGTTTTCCTCA-CTTTGCACGTGCGCATC--CA-GTTTTTCACTTACAGa
gi|8 : ataaAATATGCCTTTTTTTAAA--TTTCATGTCCGGAAACGTGTTATACATGGCTGTCAGGATTTAATTGCGG---ATAATCATG-----------------------AA-GTATTCATGCGTCCGAACACAAATAAAAC-A--CGTTTTCTTTTACTTTGCACGTGCGCAACATCCGGGTTTTCACCTACAG----AA-AACCGGCAAGTAATCATTTGTTGCTTGGCA
gi|19 : TTTAATTGCGGATAATCATTATGCA-ATTATTTTTTGAAATTTACGAA-GTATTAATGCGCCCGAGCACAAA---AA--A--TGTTTTCCACA-CTTTGCACGTGCGCATC--CA-GTTTTTCACTTAtgggtatttgtttttatttaaagaaatcaggctatttgtatgctccggaccggctcattggtatttaccgttgcgcgtcatttttgttccagatagactatttaaattcttgcaaaacagtgcaatacgttatatgagatcgtgtcagacccgcgttcgtgcaacaacgtacgtacttaaattacgttgactattcgtaatcgtttcttatctacaa
gi|21 : TTTTTCCCCAAAATTTCTGAA-GCATTCTTGCGTCAAAGCACA-A---AA--A--CATTTTCCTTacaattgtcactgtaagtga
gi|3 : ttatggtgt-CTTTGCACATGCGCAACATCCACTTTTTCACTTCCAGGTTTTA-CACTGACTTGTAATCATTTGTTGCTTTGCACATACAAAAAAAAAAC---AAT-TTGT---TTTAAAAA--AAAACAG--------TTTTATTT---GGCA---ATGCCACGTCTTTCTGAAACTGAGAGAAATCAGGCTATTGGTATGCTCCAGGCTATTGGT-AT--GG---GTAAATGCTGTTGGACGTCATTTTCGCTGTTCCAGATAGA--GTTCATATTCTTTCGAACAGGTA--CAATACTACTAGAT---------ATGTCAAGAGATCATGTCAGACCAGGT--------TGCG--------TAC--ATGCT-ATTATGCT------G--------AC-T-CACCTAGGCTAC--GTAATCGTTTCTTACCTGCAAC-CA---GGGCT-CTT------T--TG---TTCGTGCACA----ATTATAAT-CCGTT-TTAGACAAAACT-GTGCTCCAATTTGTGCTCACTGGCCATACCCTGATCA---GATTCCAACAGCGCATCACATA-CTA--------T--------T---A------------TGACCATGACGCAATTTGCAATACATG-----------CGAAACCAGTGGCAATGCCTCTGTATCCCCCCAACC-CCCACTGAGC-CTGAACCTCATAGAACATGTATGGAATG--AAT-TGGGTC---TGTGAATCAGGTCCAAT-CATCA---AGTTAATATCATA-AACAACCTCTGAAATGAACTTCTG---------------------AACAAACT--CATTCAATGTTA----CGCAAGCTCAAAGAG--------------------------ATGGCATATTCAGGAATGCATTTGTAAAAACGG-A-------------------GGCCACACTGGTTACTGACATTTA-AAAAA-AAACAGTTATTGCACT----GTCAGTGCTTTATG----TCTTTTTCAAGTGTAACATGATCA-ATTTCAT-TTTTCTGGAATTTTCATTCTGACGCTCCTTCACTTAATT----GTTTAGAAGAAA---ATCA---TGCAATATCTGA--TTT--TTTTTCCAGTAAATT------ACACA--------------------------GAAACAT-TA-CTACAGC-C------ATTTATCT-TCAACAAAAGAGACGCT------TTTGAAG----T---CAA--TGTAAAGTTTTCA-ATTT--GTCAGTGaccgt
gi|13 : TTTAAGCAGCCACACGCACTT-TTTATCA-TTGACACG----AAAATA---C---AATATTGT---TT--------A---CAG--------TTTTGACTGAAAACGTAAATGTCACGACTATCCGAAAATGACAGAAATCAGGCTGTCGGTATGCTTAGAACCG--G--CAT---GTCTGTAAATGACGTTGCTCTTCATTTTGGGTGCTCTAGGCAAACAATTCACAACCTGACAACTCGGTATGCA--ACTACTGG-------------GTCA-Gcgttataaa
gi|4 : AAA---CT-AAAT-TTGTAGATTTATAAATGA---CATCTGTTTAATTTTATTT---AGCG---ATGCCACGTCTTTCTGAAACTGAGAGAAATCAGGCTATCTGTATGCTCCGGACCA--GGTCAT--TG---GTAAATACCGTTGGATGTCATTTTGTCTGTTCCAGACAGACACTTCATATTCTTACTAACCGGTA--CAATACTTCTGGATATGTCGGATATGTCA-GAGATCGTGTCAGACCCCGTCGTGTACGTGCATTAAC-GTTAC--GTACTCATCGCGCT------ATTACGTTGAC-T-CACC---T--TC--GTAATAGTTGTCTACCTGCAAC-CAG--TA-CGCTTTAG--TGTTATGGTGTTCATGCACATAGGATCTTAAA-CCGTT-TGAGACAAAACC-CTGTTCCACTTCGTGCTCGTCGGCCATACATTTGTCA---GTTTCCGTCAGCGCGCCACAGAG-CT--------A--------T---G------------TGGGCACGACTTCATTTGCAATACACA-----------CGAAACAAGTGGCAATACCTCTGTAT-------CCC-C-----GGGC-CTGAACACCACATATCAAGTACGGAAT---------CATCAAAT----------------------------TGATACTATA-AACGACACCCGAAATGCACTTCTGTTGGAATGGCAACGTATTCCAAACACGCT--TATTCAACGTTA----CGTAAGTTCATAGAGATGACGTATTCAGGAATGCATTCCTAA--------------------------AAAC-GGA-------------------GGCCACACTGGCGACTGACGTTTA-AAAAT-AATCGGTTATTTCACTCA--GTCAGCACTTTATG----TATTTCTCAAATGTTACGTGATCA-TTTTAAT-TTTTCTAATATTTTCATTTTGACTTTGCTCC------TT----TGTCA------------------------TTT----TTT--T----CAAGTAAATTACACAGAAACA-TAATGTTTGGCAATCAGGCTTCGATGAAA-AC-TTGTTTTAACTC-TGAATATATATTTATCAGCAAAAGAGATAGT------TTTAAAG----T---CGA--TGTAAAGTTTTTA-TTTCGGGTCAGTGTAt
gi|5 : A--A---AAC--------TTTTATTT---AAGG---AGGCCACGTCTTTCCGAAAATGAGAGAAATCAG-----------------GTCTG--GGTCATACCG---ATAAATACCGTTGTACGTCATTCTTGCTGTTTCAGATAGACTATCTATATTCTTGCGAACCGGTA--CACTACTACTGGAT---------ATGTTAAGCGATCGTGTCAGACCCGGTCGCGTACGTGCAACAAC-GTCAC--GTTCTCATCGCGCT------ATTGCGTTGAC-T-CACC---T--AC--GTAATAGTTT-TTACCTGCAACACG---TA-CTCCTTTGCGTGT--CGGTATTCATGCACAGACGATCATAAA-CCGTT-TGAGATAAAAAC-GTGTTCCAATTCGTGCTCGTTGGCTCTACACTGGTCA---GATTCAGACAGCGCGCAACCGATCTG--------T--------T---A------------TGGGCACGACGTTATTTGAAATATACA-----------CGAAACCAGTGGCAATGTCTCTATA--------GCA-C-----GATCTCCGAAttaa
gi|9 : ACTGAGAGAAATTAGGCTATTGGGATGCTCTA-------------------------TACCGTTGCTCGTCATTTTGACTGTTCCAGATAGACTATTCATATTCTTGCGAACCAGTA--CAATACTACAGGAT---------ATGTTA-GAGAAAGTGTGAGACTCGGTTATGTATGTGCAACGAT-GTTAC--GAACTCATCGCGCT------ATTCCGTTGAT-T-CACT---T--AC--GTAATCATATCTTACCTGCAAC-CAG--TA-CTCCTTGGCTTTA--CGGCATTCATGCATTGACGATCATAAACCTATTGTGACATAatgcacttctgttcgaaaggcaacgtattttaaacacgctaatttagcgttccgtaaggtcacagagatgatgaattcaggaatgcattcgtaaaaacggaatttacactggttactgacgttttaagaaaatcagttattgcacttagccagcactttatgtatttttcaaatgttacatggtcattttcattgctccggaattttcattttgacccttcttcaccttattaatcagaaaaaaacatgcgatgtcagatgttttccagtaaataacacagcacattaatataggcatagagcttcaatgagagctgttttagcctttaatatatatttatcagcaaaagaaacatttttgaagtcggtgtaaaagtttcattttgggtcagtgtagttt
gi|8 : cAAAGAAATCAGGCTATTTGTATGCTCCGGACCG--GCTCAT--TG---GTATTTACCGTTGCGCGTCATTTT---TGTTCCAGATAGACTATTTAAATTCTTGCAAAACAGTG--CAATAC-----GTT---------ATAT---GAGATCGTGTCAGACCCG--CGTTC--GTGCAACAAC-G-TAC--GTACTTA------A------ATTACGTTGAC-T-----------ATTCGTAATCGTTTCTTATCTACAAgctctgccaccagttatccacttaccttacgcgataaattc
gi|15 : aatatgcctttttttaaatttcatgtccggaaacgtgttatacatggctgtcaggatttaattgcggataatcatgaagtattcatgcgtccgaacacaaataaaacacgttttcttttactttgcacgtgcgcaacatccgggttttcacctacagaaaaccggcaagtaatcatttgttgcttggcatgggtatttgtttttatttTGTGTCAGATGGACTATTCATATCCTTGC----TGATA--CAATACTACCGAAT---------ATGTCA-GCGGTCGTGTCAGACCCGGCCGAGTACGTGCTACCAC-GTTAC--GTAATCATCGCGCTAAATACGTT-TTTT----T-CACC---T--AC--GTAATC-TTTCTTACCTGCAACCCACGGTA-CTCCTTGGCGTTA--TGGTGTTCATGAACAGACGATAATAAA-CCGTT-T
gi|7 : tagaATCTACAAC-CAG--TT-TTTCTTGGCAGAA--CGGTGTTCATGCATAGACAATCATAAA-CCGTT-TGAGCCAAAC-C-GTGTTCCAATTCGTGCTCGTTGGCAATACACTTGCCA---GTATCAGACAGCCCGCCACCGAGCTT--------T--------T---AAAGATTGGTTAATGGGCAAGACGTCGTTTGCAATACACG-----------CAAATCCAGGGGCAATGCCTCTGTA--------GCC-CC----GAGC-TTGAACCCCATAGAAAACGTTTGGATAG--AAT-TAGGTCGGAGG---GTCAGGTCCAAT-CATCA---AACAGATACCATT-CA
gi|12 : ATAAA-CCATC-TGAGACAAAAACCGTGTTCTAATTC-------CCGGCCATACACTGGTCA---GATTCCGACAGCACGCCACAGGGCTT--------TCAGACTGTT---A------------TGGGCATGACGTCATTTGCTGTACACG-----------CAAAACCAGTGGAAATGCATCTGTA--------TCTTC-----GAAC-CTGAACCACATAGAACACGTATGGAATG--AAA-TAGGTCGGAGG---GTCAGGTCCAAT-AATCA---AACTAATACacgttattgacgtaagttcatagagatgacgtaaataggaatgcattcgtaaaaacggtgtccacactggttactgacgtttttaaaacaatcagttattacactcagtcaacactttatgtctttttcaaatattacgtggtcatttttatttttctggaaatttcattttgaccattcttcacttaaatattgatgtctgattttcttcccagtaaattacacagaaa
gi|10 : AGTGGTAATGCCTCTGTAT-------CCC-C-----GAGC-CTGAACCCCATAGAACACGAATGGAATGTGGGTGCGGATTGAGGG---GTGGGGGTCAAA-T----------TGATATCATA-CACGATCTCCGAAATGCACTACTGAAGGAATTGCAACCTATTCCAAATACGGT--CATTTAGCGTTA----CGTAAGTTCACAGAGATGACGTTTTCAGGAATGTATTTGTTA--------------------------AAAC-GGA-------------------GTCCACGCTGATTAATGACGTTTT-AAAAATATTCAGTGATTGCACATA--GTC------------------TTTTCAAATGCTACATGATCAGTTTTAATATGTTCTGAAATTTTgtcatt
gi|18 : caCAAATCATCAGATAAACAATGTCA----ACGATCTGAGACAAGCACTTCTTATTAAATGGCAGGCTCTCCCTAACGTCCT--CACAAGACGTTA----CGTAACTCCAT-GAG--------------------------G--------------------------AACCG
gi|5 : aggaCTATAGCACGATCTCCGAAATGCACTTCTGTTCGAAAGGCAACGTATTTTAAACACGCT--AATTTAGCGTTC----CGTAAGGTCACAGAG--------------------------ATGATGAATTCAGGAATGCATTCGTAAAAACGGAA--------------------TTTACACTGGTTACTGACGTTTT-AAGAA-AATCAGTTATTGCACTTA--GCCAGCACTTTATG----TATTTTTCAAATGTTACATGGTCA-TTTTCAT-TGCTCCGGAATTTTCATTTTGACCCTTCTTCACCTTATT----AATCAGAAAAAA---A-CA---TGCGATGTCAGA--TGT--TTT--CCAGTAAATAACACAG-CACATTAATA--TAGGCATAGAGCTTCAATGAGA-GC-TG-TTTTAGC-CTTTAATATATATTTATCAGCAAAAGAAACATT------TTTGAAG----T---CGG--TGTAAAAGTTTCA-TTTTGGGTCAGTGTAcattattgaatgcatccgaaagaatgacggccacac
gi|22 : aaaacttttatttaaggaggccacgtctttccgaaaatgagagaaatcaggtctgggtcataccgataaataccgttgtacgtcattcttgctgtttcagatagactatctatattcttgcgaaccggtacactactactggatatgttaagcgatcgtgtcagacccggtcgcgtacgtgcaacaacgtcacgttctcatcgcgctattgcgttgactcacctacgtaatagtttttacctgcaacacgtactcctttgcgtgtcggtattcatgcacagacgatcataaaccgtttgagataaaaacgtgttccaattcgtgctcgttggctctacactggtcagattcagacagcgcgcaaccgatctgttatgggcacgacgttatttgaaatatacacgaaaccagtggcaatgtctGGCAGCTTATTCCAAACATGCT--CATACAACTTTA----CGTAAATTCAgttt
gi|7 : cTCAAACA-GATACCATTCAACGTTATTGACGTAAGTTCATAGAG--------------------------ATGACGT--------------------AAATAGGAATGCATTCGTAAAAACGGTGTCCACACTGGTTACTGACGTTTTTAAAAC-AATCAGTTATTACACTCA--GTCAACACTTTATG----TCTTTTTCAAATATTACGTGGTCA-TTTTTAT-TTTTCTGGAAATTTCATTTTGACCATTCTTCACTT------------------AA---A-TA---T-TGATGTCTGA--TTTTCTTC--CCAGTAAATTACACAGAatgaggtgacctattc
gi|16 : atctacaaccagtttttcttggcagaacggtgttcatgcatagacaatcataaaccgtttgagccaaaccgtgttccaattcgtgctcgttggcaatacacttgccagtatcagacagcccgccaccgagcttttaaagattggttaatgggcaagacgtcgtttgcaatacacgcaaatccaggggcaatgcctctgtagccccgagcttgaaccccatagaaaacgtttggatagaattaggtcggagggtcaggtccaatcaGA-------------------GTCCACACTGGGCACCGACGCTTT-AAAAA-A--CAGTGTTTGCACTCA--GACAGCACTTTATACTTTTTTTTTTAAAATGTTACGTGATCA-TTTTCAT-TTTTCTGGAATTTTTATATTGACCCTTCTTCACTTAATT----TTTTAGAAAAAA---A-CA---TGCGACGTCTGA--TTT--TTT--CCAGTAAATTACACAAAaa
gi|11 : gtattcagaaatgcatcaGA-------------------GGCTACATTGGTTAATGACGTTTT-TAAAA-AATCAGTTATTGCACTAA--GTCAGCACTTTGTC----CCTTCTTCAAaa
gi|11 : tgttatattggcctatagagattacgtattcaggaatgcattcgtaaatacCACTTTGTCCCTTCTTCAATCATTTTTTAGA--AAAAAAAA---A-CA---TGCGATGTCTGGGTTTT--TTT--CCAGTAAATCACGCAGAAACATTAATA--TAGCCATAAAGCCTCGATGAAA-AC-T----------C-TGAACATATATTTAACAGAAACAACGATACT------TTTAAAA----T---CGA--CGTAAAATTTTCA-T------TCAGTGTAtcattttttagaaaaaaaaaacatgcgatgtctgggtttttttccagtaaatcacgcagaaacattaatatagccataaagcctcgatgaaaactctgaacatatatttaacagaaacaacgatacttttaaaatcgacgtaaaattttcattcagtgtata
gi|23 : tgttatattggcctatagagattacgtattcaggaatgcattcgtaaatacgaggctacattggttaatgacgtttttaaaaaatcagttattgcactaagtcag--TGGCAATAAAACTTCGATAAAA-AC-TT-TTA-ACT-C-TGAATATGCATTTATCAGTAAAta
gi|1 : -C-CGAACATGTAT--GTTAGCAGAAGAAATA--------TTT-AAA----CATATAACGTGTTAAGTTTTTA-TTTTGGGTCAGTGT
gi|6 : c-TGAACATGTAT--GTTAACAAAGGAAATA--------TTC-AAACATAT---TAAG-TGTAAAGTTTTTA-TTTTGGGTCAGTGTaaacgtgttatacatggctatcaggattcaattgcggataatcattacgattttttttcataatttccgaattatgcatgcatccgagcacaaaaataacgttttccttactttggacgtgcgcaacatccgttttttatcgacaccgacaagtaatcattcgttgcttagcgcagataaaaaacttaaatttgtttaaaaaaaacacttttacttagtgatgccacgtctttctgaaactgagtgaagtcgggctattggtatccgggacgggtcattggtaaataccgtttctcttattttggctgttccagatagactattcatattcttgcgaaccggtacaacactactggatatgtcagagatagtgtcaaacccggttatgtatgttcaaaatcgttacgtactcatcgcgatgttacgttgatatacacccacgtaattgtttcttacttgcaacgagtactcctgtattttacgatgttcacgtacagacgagcataaactgtttgaaacaaaaacctgttccatttcgtgctcgtcgcacatacactggccagtctccgacagcgcgtcagagattccagactattatgagcacgacgtcatacacgcgaaatcggtgacaatgcctctgtatccccaagcctgaacctcatagaacacctatggaatgaattgggtcagagggtaatgtctaatcatcaaattgttaccgtaaatgaccttgaaatgcacttctgttgtaatggcaatgtattccaaacacgctcgtttaacgttacgtaggttcatagagagtacgtgttccggaatgcatttgttaaaacggagtcgacactggtaactgacgttttaaaaaaaatcagttattgcagttactgtcagtactttttgtctttttcaaatgttaaatgatcattttcatttttcatcaattttcattttgacccttcttcacttaattgttaaaaaaaacccacaacttgcgatgtctgatatttcccagtaaattacacagacacataattatagccataaagcttcgatgaaaactttttaaatcctgaatatacattaatcagcaaacgagatacttttaaagtcgatctaaagttttcattttgggtcagtgtat
gi|14 : -TGAA-ATATGTATGTTAACAAAAGAAATATTCCAACGTTT-AA----------AG--CGTAAAGTTTTCA-TTTTTGTTCAaaagcgtgttatacattgcggataatcattatgcattttttcctcaaaatttcagatgtatgtttgcgtccgagcacaaacactccgttttccttactttgcacgtgtgcaacatctggtttttcactaataggatttacaccgcgagtaatcttttattgcttagcacagatagaaaactttaatttgtttaaaaaaaaacactttcattaagcgatcccacatctttccgaaactgagagaaatccgactattggtatgctccgggccagtaaataccgttgcatgtcattttggctgttccagatagactattcatactcttgcgagcttgatatgtcagagatcgtgtcaggcccggtcacatacgtgcaacaacgttacgaatacattgatacacctaagtaatcgtttcttacctgcaactagtactccttgtcgttacggtattcatgcttacacgatcataaaccggttgaaacaaaaccgtgttccaattcgtgctcttcggccatacactggtcagatgattccgacagcgcgcgacatagcttccagattggaatgggcacgatgccatgtgaaatacatgcgaaatacactcgaaattagtggcaatgcctctgtatccccgagc
gi|17 : ataaACATGTTTGTTAGCAAAAGAAATATTCAAACATTT-AA----------AG--TGTAAAGTTTTCATTTTTGGGTCAGTGaaacgtgttatacatggctatcagaatttaattgcggataatcattatgtaattatttttcgaaatttacgaagcattaatgcgcccgagcacaaaaaatgttttcctcactttgcacgtgcgcatccagtttttcacttacag
gi|24 : GCAAAAAAGATACT------TTG-TAG----T---CGA--TATAA-GTTTTCA-TTTTGGGTCAATcctgaaacgtgttatacatggttatcgggatttatttgcggataatcattatgcattttttttttcgaaatttaaaagtattcatgcatccgagcacaaaaacgttttccttactttagatg
Alignments
lowQualScore : 33333 111111111 11 2 111 111 33333333 1111111111111111 11111111111 11111 11111 1111111 5555555555555555555555555555 11111111 111111 222222222222 111111 777777777777777777 3 1111 11 111111 1111111 11 11111 111 1111111111 111 2
lowQualScore : 6 00000 2 1 6 0 1 77 0 1 77 222222222 5 4 4 00 1 3 4 0 111 55 111 77 5 33333333 44 1 4 4444444444444444 1 1 2 0 55 0 77777777777 0 1 11 0 1 77 4 4 4 11111 44444 2 1 44 1 1 5 888 1 6666666 0 5 6666666666666666666666666666 5 88888888 66 222222 222222222222 0 1 1 5 555555 0 3 1 3 66 0 5 0 4 1 66 66 8888 777777777777777777 5 3333 5 77 8 4 5 66 9999 0 5 5 777777 0 6666666 888 0 33 66 5 2 3 77 44444 77 000 3333333333 5 5 000 3 6
lowQualScore : . ..... . . . . . .. . . .. ......... . . . .. . . . . ... .. ... .. . ........ .. . . ................ . . . . .. . ........... . . .. . . .. . . . ..... ..... . . .. . . . ... . ....... . . ............................ . ........ .. ...... ............ . . . . ...... . . . . .. . . . . . .. .. .... .................. . .... . .. . . . .. .... . . . ...... . ....... ... . .. .. . . . .. ..... .. ... .......... . . ... . .
lowQualScore : 7 77777 7 7 6 1 4 66 5 1 55 555555555 0 3 0 88 0 8 6 4 777 00 777 77 7 33333333 66 9 2 8888888888888888 0 1 3 7 55 7 44444444444 1 1 99 1 1 99 4 4 4 11111 11111 9 9 44 1 0 0 888 0 2222222 2 6 9999999999999999999999999999 0 11111111 99 888888 888888888888 1 4 6 7 000000 7 4 4 1 77 7 4 7 5 9 11 11 5555 777777777777777777 0 1111 0 55 9 4 4 11 4444 1 0 0 555555 8 5555555 888 4 88 99 0 5 5 99 33333 99 000 9999999999 7 0 000 7 7
consensus : ACACTGACCCAAAA-TGAAAACTTTACACTTTATA---T-GTTTGAATATTTCTTTTGTTAACATACATGTTCCGAAACGTGTTATACATGGCTATCAGGATTTAATTGCGGATAATCATTATGCA-ATTTTTTTTCGAAATTTACGAAGTATTCATGCGTCCGAGCACAAA---A--A--ACGTTTTCCTT-ACTTTGCACGTGCGCAACATCCGGTTTTTCACTTACAGGTTTNACACCGACAAGTAATCATTCGTTGCTTAGCACAGATAAAAAAA---CTTAAATTTGT---TT-NAAAAA-AACAC--------TTTTATTTAGCGATGCCACGTCTTTCCGAAACTGAGAGAAATCAGGCTATTGGTATGCTCCGGGCCG--GGTCAT--TG---GTAAATACCGTTGCACGTCATTTTGGCTGTTCCAGATAGACTATTCATATTCTTGCGAACCGGTA--CAATACTACTGGATATGTC---------A-GAGATCGTGTCAGACCCGGTCGCGTACGTGCAACAACGTTACGTACTCATCGCGCT-ATTACG-TTGAC-T-CACCTA-----CGTAATCGTTTCTTACCTGCAAC---CAGTACTCCTTGGCGTTACGGTGTTCATGCACAGACGATCATAAACCGTTTGAGACAAAANC-GTGTTCCAATTCGTGCTCGTCGGCCATACACTGGTCA---GATTCCGACAGCGCGCCA-------CAGAGCTN-----T--------T------------ATGGGCACGACGTCAT-T--------TGC--AATACACGCGAAACCAGTGGCAATGCCTCTGT------ATCCCC------------GAGCCTGAACCCCATAGAACACGTATGGAATGAATTGGGT-CGGA-----GGGTCAGGTCCAATCATCAAATTGATACCATAA-ACGACCTCCGAAATGCACTTCTGTTGGAATGGCAACGTATTCCAAACACGCT--CATTCAA--CGTTA----CGTAAGTTCATAGAGATGAC--G--TAT--TCA-GGAATGCATTCGTAAA-AACGGAGTCCACACTGGTTACTGACGTTTT-AAAAAAAT-CAGTTATTGCACTCA--GTCAGCACTTTATG----TCTTTTTCAAATGTTACGTGATCA-TTTTCAT-TTTTCTGGAATTTTCATTTTGACCCTTCTTCACTTAATTG-TTAGAAAAAA---A---CA---TGCGATGTCTGA--TTT--TTTCCA-GTAAATTACACAGANACATTAATAT--AGCCATAAAGCTTCGATGAAA-----AC--TT---TT--A-ACCC--TG-AATATAT---ATTTATCAGCAAAAGAGATACTTTTAAAGTCGATGTAAAGTTTTCATTTTGGGTCAGTGTA
Reference ( family-217 ) : ACACTGACCCAAAA-TGAAAACTTTACACTTTATA---A-GTTTGAATATTTCTTTTGCTAACATACATGTTCGGAAACGTGTTATACATGGCTATCAGGATTTAATTGCGGATAATCATTATGCA-ATTTTTTTTCGAAATTTACGAAGTATTCATGCGTCCGAGCACAAA---A--A--ACGTTTTCCTT-ACTTTGCACGTGCGCAACATCCGGTTTTTCACTTACAGGTTTNACACCGACAAGTAATCATTTGTTGCTTGGCACAGATAAAAAAA---CTTAAATTTGT---TT-NAAAAA-AACAC--------TTTTATTTAGCGATGCCACGTCTTTCCGAAACTGAGAGAAATCAGGCTATCGGTATGCTCCGGACCG--GGTCAT--TG---GTAAATACCGTTGCNCGTCATTTTGGCTGTTCCAGATAGACTATTCATATTCTTGCGAACCGGTA--CAATACTACTGGATATGTC---------A-GAGATCGTGTCAGACCCGGTCGCGTACGTGCAACAACGTTACGTACTCATCGCGCT-GTTACG-TTGAC-T-CACCTA-----CGTAATCGTTTCTTACCTGCAAC---CGGTACTCCTTGGCGTTNCGGTGTTCATGCACAGACGATCATAAACCGTTTGAGACAAAANC-GTGTTCCAATTCGTGCTCGTCGGCCATACACTGGTCA---GNTTCCGACAGCGCGCCA-------CAGAGCTT-----T--------T------------ATGGGCACGACGTCAT-T--------TGC--AATACACGCGAAACCAGTGGCAATGCCTCTGT------ATCCCC------------GAGCCTGAACCCCATAGAACACGTATGGAATGAATTGGGT-CGGA-----GGGTCAGGTCCAATCATCAAACTGATACCATAN-ACGACCTCCGAAATGCACTTCTGTTGGAATGGCAACGTATTCCAAACACGCT--CATTCAA--CGTTA----CGTAAGTTCATAGAGA--AC--G--T-T--TC--GGAATG-ATTTATGAA-ACGGGAGTCCACACTGGTTACTGACGTTTT-AAAAAAAT-CAGTTATTGCACTCA--GTCAGCACTTTATG----TCTTTTTCAAATGTTACGTGATCA-TTTTCAT-TTTTCTGGAATTTTCATTTTGACCCTTCTTCACTTAATTGNTTAGAAAAAA---A---CA---TGCGATGTCTGA--TTT--TTTCCA-GTAAATTACACAGACACATTAATAT--AGCCATAAAGCTTCGATGAAA-----AC--TT---TT--A-ANCC--TG-AACATAT---ATTTGTCAGCAAAAGAGATACTTTT-AAGTCGATGTAAAGTTTTCATTTTGGGTCAGTGTA
gi|1 : ACACTGACCCAAAA-TAAAAACTTAACACGTTATA---T-GTTTAAATATTTCTTCTGCTAACATACATGTTCGGAAACGTGTTATACATGGCTATCAGGATTCAATTGCGGATAATCATTA--CG-ATTTTTTTTCATAATTTCCGAATTATGCATGCATCCGAGCACAAA---AATA--ACGTTTTCCTT-ACTTTGGACGTGCGCAACATCC-GTTTTTTA---------TCGACACCGACAAGTAATCATTCGTTGCTTAGCGCAGAT-AAAAAA---CTTAAATTTGT---TT-AAAAAA-AACAC--------TTTTACTTAGTGATGCCACGTCTTTCTGAAACTGAGTGAAGTCGGGCTATTGGTA---TCCGGGACG--GGTCAT--TG---GTAAATACCGTTTCTC-TTATTTTGGCTGTTCCAGATAGACTATTCATATTCTTGCGAACCGGTA--CAACACTACTGGATATGTC---------A-GAGATAGTGTCAAACCCGGTTATGTATGTTCAAAATCGTTACGTACTCATCGCGAT-GTTACG-TTGATATACACCCA-----CGTAATTGTTTCTTACTTGCAAC---GAGTACTCCTGTATTTTACGATGTTCACGTACAGACGAGCATAAACTGTTTGAAACAAAAAC-CTGTTCCATTTCGTGCTCGTCGCACATACACTGGCCA---GTCTCCGACAGCGCGTCAGAGATTCCAGA-CTA-----T--------T------------ATGAGCACGACGTC------------------ATACACGCGAAATCGGTGACAATGCCTCTGT------ATCCCC------------AAGCCTGAACCTCATAGAACACCTATGGAATGAATTGGGT-CAGA-----GGGTAATGTCTAATCATCAAATTGTTACCGTAA-ATGACCT-TGAAATGCACTTCTGTTGTAATGGCAATGTATTCCAAACACGCT--CGTTTAA--CGTTA----CGTAGGTTCATAGAGAGTACGTG--T-T--CC--GGAATGCATTTGTTAA-AACGGAGTCGACACTGGTAACTGACGTTTTAAAAAAAAT-CAGTTATTGCAGTTACTGTCAGTACTTTTTG----TCTTTTTCAAATGTTAAATGATCA-TTTTCAT-TTTTCATCAATTTTCATTTTGACCCTTCTTCACTTAATTG-TTAAAAAAAACCCA---CAACTTGCGATGTCTGA--TAT--TTCCCA-GTAAATTACACAGACACATAATTAT--AGCCATAAAGCTTCGATGAAA-----AC--TT---TTTAA-ATCC--TG-AATATAC---ATTAATCAGCAAACGAGATACTTTTAAAGTCGATCTAAAGTTTTCATTTTGGGTCAGTGTA
gi|10 : cAGTGGTAATGCCTCTGT------ATCCCC------------GAGCCTGAACCCCATAGAACACGAATGGAATG---TGGGTGCGGATTGAGGGGTGGGG-------GTCAAATTGATATCATAC-ACGATCTCCGAAATGCACTACTGAAGGAATTGCAACCTATTCCAAATACGGT--CATTTAG--CGTTA----CGTAAGTTCACAGAGATGAC--G--T-T--TTCAGGAATGTATTTGTTAA-AACGGAGTCCACGCTGATTAATGACGTTTT-AAAAATATTCAGTGATTGCACATA--GTC------------------TTTTCAAATGCTACATGATCAGTTTTAATATGTTCTGAAATTTTt
gi|11 : caGTTA----TATTGGCCTATAGAGATTAC--G--TAT--TCA-GGAATGCATTCGTAAATACG--AGGCTACATTGGTTAATGACGTTTT-TAAAAAAT-CAGTTATTGCACTAA--GTCAGCACTTTGTC----CCTTCTTCAA
gi|11 : tCACTTTGTCCCTTCTTCAATCA-TTTTTTAGAAAAAA---AAAACA---TGCGATGTCTGGGTTTT--TTTCCA-GTAAATCACGCAGAAACATTAATAT--AGCCATAAAGCCTCGATGAAA-----AC--T-------------C--TG-AACATAT---ATTTAACAGAAACAACGATACTTTTAAAATCGACGTAAAATTTTCAT------TCAGTGTAtcattttttagaaaaaaaaaacatgcgatgtctgggtttttttccagtaaatcacgcagaaacattaatatagccataaagcctcgatgaaaactctgaacatatatttaacagaaacaacgatacttttaaaatcgacgtaaaattttcattcagtgtata
gi|12 : tgttatattggcctatagagattacgtattcaggaatgcattcgtaaatacgaggctacattggttaatgacgtttttaaaaaatcagttattgcactaagtcagATAAACCATCTGAGACAAAAACCGTGTTCTAATTC-------CCGGCCATACACTGGTCA---GATTCCGACAGCACGCCA-------CAGGGCTT-----TCAGACTGTT------------ATGGGCATGACGTCAT-T--------TGC--TGTACACGCAAAACCAGTGGAAATGCATCTGT------ATCTTC------------GAACCTGAACCACATAGAACACGTATGGAATGAAATAGGT-CGGA-----GGGTCAGGTCCAATAATCAAACTAATACta
gi|13 : ATGTCACGACTATCCGAAAATGACAGAAATCAGGCTGTCGGTATGCTTAGAACCG--G--CA---TGTCTGTAAATGACGTTGCTCTTCATTTTGGGTGCTCTAGGCAAACAATTCACAACCTGACAACTCGGTATGCA--ACTACTGG----GTC---------A-Ggtcatt
gi|14 : tttaagcagccacacgcactttttatcattgacacgaaaatacaatattgtttacagttttgactgaaaacgtaaTGAACAAAAA-TGAAAACTTTACGCTTTAAA---C-GTTGGAATATTTCTTTTGTTAACATACATATTTCAAAACGTGTTATACATGGCTATCAGAATTTAATTGCGGATAATCATTATGTA-ATTATTTTTCGAAATTTACGAAGCATTAATGCGCCCGAGCACAAA---A--A--ATGTTTTCCTC-ACTTTGCACGTGCG---CATCCAGTTTTTCACTTACAGt
gi|15 : ataaTGTGTCAGATGGACTATTCATATCCTTGC----TGATA--CAATACTACCGAATATGTC---------A-GCGGTCGTGTCAGACCCGGCCGAGTACGTGCTACCACGTTACGTAATCATCGCGCTAAATACGTTTTTT-T-CACCTA-----CGTAATC-TTTCTTACCTGCAACCCACGGTACTCCTTGGCGTTATGGTGTTCATGAACAGACGATAATAAACCGTTT
gi|16 : tagaGAGTCCACACTGGGCACCGACGCTTT-AAAAAA---CAGTGTTTGCACTCA--GACAGCACTTTATACTTTTTTTTTTAAAATGTTACGTGATCA-TTTTCAT-TTTTCTGGAATTTTTATATTGACCCTTCTTCACTTAATTTTTTAGAAAAAA---A---CA---TGCGACGTCTGA--TTT--TTTCCA-GTAAATTACACAAA
gi|17 : gtattcagaaatgcatcaCACTGACCCAAAAATGAAAACTTTACACTTTAAA---T-GTTTGAATATTTCTTTTGCTAACAAACATGTCCTGAAACGTGTTATACATGGTTATCGGGATTTATTTGCGGATAATCATTATGCATTTTTTTTTTCGAAATTTA-AAAGTATTCATGCATCCGAGCAC-AA---A--A--ACGTTTTCCTT-ACTTTaa
gi|18 : AGGACAAATCATCAGATAAACAATGTCA-ACGATCTGAGACAAGCACTTCTTATTAAATGGCAGGCTCTCCCTAACGTCCT--CA--CAAGACGTTA----CGTAACTCCATGAGGA--AC--agatg
gi|19 : TTTAATTGCGGATAATCATTATGCA-ATTATTTTTTGAAATTTACGAAGTATTAATGCGCCCGAGCACAAA---A--A--ATGTTTTCCAC-ACTTTGCACGTGCG---CATCCAGTTTTTCACTTAcgcattattgaatgcatccgaaagaatgacggccacac
gi|2 : ACACTGACCCAAAA-TGATAACTTTACACTTTATATACATGTTTGAATATTTCTTTTGTTAACATACATATTCCAAAATGTGTTTTACATGGCTATCCGAATTTAATTGCGATTAATCATCATGCA-ATTTTTTTTAAAAATTTACAAAGTATTCATGCGTCCAAGCACAAA---A--A--ACGTATTCCTT-CCTTTGCATGTGCGCAACAACAGGTTTTTCACTTACAGGTTTAACACCAACAAGTACTCATTCGTTGCTTAACACATATAAAAAAA---CTTAAATTTGT---TT-TAAAA--AACAC--------TTTTATTTAGCGATGCCACGTCTTTCTTAAACTGAGAGAAATAAGACCCTTTGTATGCTCCAGTCTG--GGTCAT--TG---GTAAATACCGTTGCACGTCATTTTGGCTGTTCCAGATAGACTATTTATATTCTAGCAAACCGGTA--CAATACTACTGGATATGTC---------A-GAGATCATGTCAGACTTGGTCACTTAGGTGCAACAATATTACATACTCATTGTGCT-GTTATT-TTGAC-T-CACCGA-----TGTAATCATTTCTTACCTGCAAC---ACATACTACTTGGCATGTCGATATTCATGCACAGACGATCATAAACTGTTTGAAATAAAAAC-ATATTCCAATTCGTGTTCGTCGGCCCTACACTGGTCA---GATTCCGACAGCGCGCCA-------CTGAGTTT-----T--------T------------ATGGGCACAACGTCAT-T--------TGC--AATACATGCAAAACCAGTGGCAATGCCTTTAT------A-ACCC------------GAGCCTGAACCCCATAGAACACATACAGAATGAATTGGAT-CAAA-----TGGTCAGGTTCAAACATCAAAATAATACCATAC-ACTATCTCCGAAATGCACTTCTGTTGGAATGGCAACATATTTCAAACACGCT--CATTTAA--CGTTA----CGTAAGTTCACAGAGA--------------------------------AA-ACGGGAGTCCACACTGGTTACTGATGTTTT-AAAAAAAT-CAGTTATTGCACTTA--GCCAGCACTTTATG----TCTTTTTCAAATGTTACATGATCA-TTTTCAT-TGTTCTGGAATTTTCATTTTGACCCTTCTTCACTTAATTGATCAGGAAAAA---A---CA---TGCGATGTCTAA--TTT--TTTCCA-ATAAATTATACAGACACATTAATAT--AGCCATAAAGCTTCAATGAAA-----AC--TT---TT--ATAGCC--TG-AATATAT---ATTTATCAGCAAAAGAGACACTTTT-AAGTCAATGTAAAGTTTTCATTTTAGGTCAGTGTAacaattgtcactgtaagtga
gi|20 : CACTGACCAAAAA-TGAAAACATTACACTTTATA---T-GTATGAATATTTAT-----TAACA----------GAGATGTGTTACACATGGCTATCAGGATTTAATTG
gi|21 : TTTTTCCCCAAAATTTCTGAAGCATTCTTGCGTCAAAGCACA-A---A--A--ACATTTTCCTT-ACa
gi|22 : ttatggtgtGGCAGCTTATTCCAAACATGCT--CATACAA--CTTTA----CGTAAATTCAcgt
gi|23 : cT--GGCAATAAAACTTCGATAAAA-----AC--TT---TT--A-ACTC--TG-AATATGC---ATTTATCAGTAAAatgaggtgacctattc
gi|24 : GCAAAAAAGATACTTTG-TAGTCGATAT-AAGTTTTCATTTTGGGTCAAT
gi|3 : CTTTGCACATGCGCAACATCCACTTTTTCACTTCCAGGTTTTACACTGACTTGTAATCATTTGTTGCTTTGCACATACAAAAAAAAAAC---AATTTGT---TT-TAAAAA-AAAACAG------TTTTATTTGGCAATGCCACGTCTTTCTGAAACTGAGAGAAATCAGGCTATTGGTATGCTCCAGGCTATTGGT-AT--GG---GTAAATGCTGTTGGACGTCATTTTCGCTGTTCCAGATAGA--GTTCATATTCTTTCGAACAGGTA--CAATACTACTAGATATGTC---------AAGAGATCATGTCAGACCAGGTTGCGTACATGC------------------------T-ATTATG-CTGAC-T-CACCTAGGCTACGTAATCGTTTCTTACCTGCAAC---CAGGGCTCTTT----------TGTTCGTGCACA----ATTATAATCCGTTTTAGACAAAACT-GTGCTCCAATTTGTGCTCACTGGCCATACCCTGATCA---GATTCCAACAGCGCATCA-------CATA-CTA-----T--------T------------ATGACCATGACGCAAT-T--------TGC--AATACATGCGAAACCAGTGGCAATGCCTCTGT------ATCCCCCCAACCCCCACTGAGCCTGAACCTCATAGAACATGTATGGAATGAATTGGGT-CTGT-----GAATCAGGTCCAATCATCAAGTTAATATCATAA-ACAACCTCTGAAATGAACTTCTG---------------------AACAAACT--CATTCAA--TGTTA----CGCAAGCTCAAAGAGATGGC--A--TAT--TCA-GGAATGCATTTGTAAA-AACGGAGGCCACACTGGTTACTGACATTTA-AAAAAAAA-CAGTTATTGCACT----GTCAGTGCTTTATG----TCTTTTTCAAGTGTAACATGATCA-ATTTCAT-TTTTCTGGAATTTTCATTCTGACGCTCCTTCACTTAATTGTTTAGAAGAAA---AT--CA---TGCAATATCTGATTTTT--TTTCCA-GTAAATTACACAGAAACATTACTAC--AGCCATTTATCTTCAACAAAAGAGACGC--TT---TTG-A-AGTCAATGTAAAGTTTTCAATTTGTCAGct
gi|4 : AAA---CT-AAATTTGTAGATT-TATAAATGACATCTGTTTAATTTTATTTAGCGATGCCACGTCTTTCTGAAACTGAGAGAAATCAGGCTATCTGTATGCTCCGGACCA--GGTCAT--TG---GTAAATACCGTTGGATGTCATTTTGTCTGTTCCAGACAGACACTTCATATTCTTACTAACCGGTA--CAATACTTCTGGATATGTCGGATATGTCA-GAGATCGTGTCAGACCCCGTCGTGTACGTGCATTAACGTTACGTACTCATCGCGCT-ATTACG-TTGAC-T-CACCTT-----CGTAATAGTTGTCTACCTGCAAC---CAGTACGCTTTAGTGTTATGGTGTTCATGCACATAGGATCTTAAACCGTTTGAGACAAAACC-CTGTTCCACTTCGTGCTCGTCGGCCATACATTTGTCA---GTTTCCGTCAGCGCGCCA-------CAGAGCTA-----T---------------------GTGGGCACGACTTCAT-T--------TGC--AATACACACGAAACAAGTGGCAATACCTCTGT------ATCCCC------------GGGCCTGAACACCACATATCAAGTA----------------CGGA-----------------ATCATCAAATTGATACTATAA-ACGACACCCGAAATGCACTTCTGTTGGAATGGCAACGTATTCCAAACACGCT--TATTCAA--CGTTA----CGTAAGTTCATAGAGATGAC--G--TAT--TCA-GGAATGCATTCCTAAA-AACGGAGGCCACACTGGCGACTGACGTTTA-AAAATAAT-CGGTTATTTCACTCA--GTCAGCACTTTATG----TATTTCTCAAATGTTACGTGATCA-TTTTAAT-TTTTCTAATATTTTCATTTTGACTTTGCTC--CTT---------------------------------TGTC--A--TTT--TTTTCAAGTAAATTACACAGAAACAT-AATGTTTGGCAATCAGGCTTCGATGAAA-----AC--TTGTTTT--A-ACTC--TG-AATATAT---ATTTATCAGCAAAAGAGATAGTTTTAAAGTCGATGTAAAGTTTTTATTTCGGGTCAGTGTAtgcgttataaa
gi|5 : -AAAAC--------TTTTATTTAAGGAGGCCACGTCTTTCCGAAAATGAGAGAAATCAGGT-----------------CTG--GGTCATACCG---ATAAATACCGTTGTACGTCATTCTTGCTGTTTCAGATAGACTATCTATATTCTTGCGAACCGGTA--CACTACTACTGGATATGTT---------AAGCGATCGTGTCAGACCCGGTCGCGTACGTGCAACAACGTCACGTTCTCATCGCGCT-ATTGCG-TTGAC-T-CACCTA-----CGTAATAGTTT-TTACCTGCAAC---ACGTACTCCTTTGCGTGTCGGTATTCATGCACAGACGATCATAAACCGTTTGAGATAAAAAC-GTGTTCCAATTCGTGCTCGTTGGCTCTACACTGGTCA---GATTCAGACAGCGCGCAA-------CCGATCTG-----T--------T------------ATGGGCACGACGTTAT-T--------TGA--AATATACACGAAACCAGTGGCAATGTCTCTATAGCACGATCTCC------------GAttaa
gi|5 : CTATAGCACGATCTCCGAAATGCACTTCTGTTCGAAAGGCAACGTATTTTAAACACGCT--AATTTAG--CGTTC----CGTAAGGTCACAGAGATGAT--GAAT-T--CA--GGAATGCATTCGTAAA-AACGGAATTTACACTGGTTACTGACGTTTT-AAGAAAAT-CAGTTATTGCACTTA--GCCAGCACTTTATG----TATTTTTCAAATGTTACATGGTCA-TTTTCAT-TGCTCCGGAATTTTCATTTTGACCCTTCTTCACCTTATTAATCAGAAAAAA---A---CA---TGCGATGTCAGA--TGT--TTTCCA-GTAAATAACACAG-CACATTAATAT--AGGCATAGAGCTTCAATGAGA-----GCTGTT---TT--A-GCCT--TT-AATATAT---ATTTATCAGCAAAAGAAACATTTTTGAAGTCGGTGTAAAAGTTTCATTTTGGGTCAGTGTAaatgcacttctgttcgaaaggcaacgtattttaaacacgctaatttagcgttccgtaaggtcacagagatgatgaattcaggaatgcattcgtaaaaacggaatttacactggttactgacgttttaagaaaatcagttattgcacttagccagcactttatgtatttttcaaatgttacatggtcattttcattgctccggaattttcattttgacccttcttcaccttattaatcagaaaaaaacatgcgatgtcagatgttttccagtaaataacacagcacattaatataggcatagagcttcaatgagagctgttttagcctttaatatatatttatcagcaaaagaaacatttttgaagtcggtgtaaaagtttcattttgggtcagtgtagttt
gi|6 : aaaacttttatttaaggaggccacgtctttccgaaaatgagagaaatcaggtctgggtcataccgataaataccgttgtacgtcattcttgctgtttcagatagactatctatattcttgcgaaccggtacactactactggatatgttaagcgatcgtgtcagacccggtcgcgtacgtgcaacaacgtcacgttctcatcgcgctattgcgttgactcacctacgtaatagtttttacctgcaacacgtactcctttgcgtgtcggtattcatgcacagacgatcataaaccgtttgagataaaaacgtgttccaattcgtgctcgttggctctacactggtcagattcagacagcgcgcaaccgatctgttatgggcacgacgttatttgaaatatacacgaaaccagtggcaatgtctACACTGACCCAAAA-TAAAAACTTTACACTTAATA---T-GTTTGAATATTTCCTTTGTTAACATACATGTTCAAAAGCGTGTTATAC-----------------ATTGCGGATAATCATTATGCA-TTTTTTCCTCAAAATTTCAGATGTATGTTTGCGTCCGAGCACAAA---C--ACTCCGTTTTCCTT-ACTTTGCACGTGTGCAACATCTGGTTTTTCACTAATAGGATTTACACCG-CGAGTAATCTTTTATTGCTTAGCACAGAT-AGAAAA---CTTTAATTTGT---TTAAAAAAA-AACAC--------TTTCATTAAGCGATCCCACATCTTTCCGAAACTGAGAGAAATCCGACTATTGGTATGCTCCGGGCC------------A---GTAAATACCGTTGCATGTCATTTTGGCTGTTCCAGATAGACTATTCATACTCTTGCGA----------------GCTTGATATGTC---------A-GAGATCGTGTCAGGCCCGGTCACATACGTGCAACAACGTTACGAA--------------TACA-TTGAT-A-CACCTA-----AGTAATCGTTTCTTACCTGCAAC---TAGTACTCCTTGTCGTTACGGTATTCATGCTTACACGATCATAAACCGGTTGAAACAAAACC-GTGTTCCAATTCGTGCTCTTCGGCCATACACTGGTCAGATGATTCCGACAGCGCGCGA-------CATAGCTTCCAGAT--------TGGA---------ATGGGCACGATGCCATGTGAAATACATGCGAAATACACTCGAAATTAGTGGCAATGCCTCTGT------ATCCCC------------GAGCgttt
gi|7 : ATCTACAAC---CAGTTTTTCTTGGCAGAACGGTGTTCATGCATAGACAATCATAAACCGTTTGAGCCAAA-CC-GTGTTCCAATTCGTGCTCGTTGGCAATACACTTGCCA---GTATCAGACAGCCCGCCA-------CCGAGCTT-----T--------TAAAGATTGGTTAATGGGCAAGACGTCGT-T--------TGC--AATACACGCAAATCCAGGGGCAATGCCTCTGT------AGCCCC------------GAGCTTGAACCCCATAGAAAACGTTTGGATAGAATTAGGT-CGGA-----GGGTCAGGTCCAATCATCAAACAGATACCAT
gi|7 : CAAACA-GATACCATTCAA--CGTTATTGACGTAAGTTCATAGAGATGAC--G--T-AAATA--GGAATGCATTCGTAAA-AACGGTGTCCACACTGGTTACTGACGTTTTTAAAACAAT-CAGTTATTACACTCA--GTCAACACTTTATG----TCTTTTTCAAATATTACGTGGTCA-TTTTTAT-TTTTCTGGAAATTTCATTTTGACCATTCTTCACTT--------------AA---A---TA---T-TGATGTCTGA--TTTTCTTCCCA-GTAAATTACACAGAtcaacgttattgacgtaagttcatagagatgacgtaaataggaatgcattcgtaaaaacggtgtccacactggttactgacgtttttaaaacaatcagttattacactcagtcaacactttatgtctttttcaaatattacgtggtcatttttatttttctggaaatttcattttgaccattcttcacttaaatattgatgtctgattttcttcccagtaaattacacagaaa
gi|8 : atctacaaccagtttttcttggcagaacggtgttcatgcatagacaatcataaaccgtttgagccaaaccgtgttccaattcgtgctcgttggcaatacacttgccagtatcagacagcccgccaccgagcttttaaagattggttaatgggcaagacgtcgtttgcaatacacgcaaatccaggggcaatgcctctgtagccccgagcttgaaccccatagaaaacgtttggatagaattaggtcggagggtcaggtccaatcatAATATGCCTTTTTTTAAATTTCATGTCCGGAAACGTGTTATACATGGCTGTCAGGATTTAATTGCGGATAATCAT--------------------------GAAGTATTCATGCGTCCGAACACAAATAAA--AC-ACGTTTTCTTTTACTTTGCACGTGCGCAACATCCGGGTTTTCACCTACAG----AAAACCGGCAAGTAATCATTTGTTGCTTGGCATGGGT------A---TTTGTTTTTAT---TT-AAAGAA-ATCAaa
gi|8 : AAAGAAATCAGGCTATTTGTATGCTCCGGACCG--GCTCAT--TG---GTATTTACCGTTGCGCGTCATTTT---TGTTCCAGATAGACTATTTAAATTCTTGCAAAACAGTG--CAATAC-----GTTATAT------------GAGATCGTGTCAGACC----CGCGTTCGTGCAACAACG-TACGTACTTA------A-ATTACG-TTGAC-T--A--TT-----CGTAATCGTTTCTTATCTACAAggctatttgtatgctccggaccggctcattggtatttaccgttgcgcgtcatttttgttccagatagactatttaaattcttgcaaaacagtgcaatacgttatatgagatcgtgtcagacccgcgttcgtgcaacaacgtacgtacttaaattacgttgactattcgtaatcgtttcttatctacaa
gi|9 : aatatgcctttttttaaatttcatgtccggaaacgtgttatacatggctgtcaggatttaattgcggataatcatgaagtattcatgcgtccgaacacaaataaaacacgttttcttttactttgcacgtgcgcaacatccgggttttcacctacagaaaaccggcaagtaatcatttgttgcttggcatgggtatttgtttttatttACTGAGAGAAATTAGGCTATTGGGATGCTCT-------------------------ATACCGTTGCTCGTCATTTTGACTGTTCCAGATAGACTATTCATATTCTTGCGAACCAGTA--CAATACTACAGGATATGTT---------A-GAGAAAGTGTGAGACTCGGTTATGTATGTGCAACGATGTTACGAACTCATCGCGCT-ATTCCG-TTGAT-T-CACTTA-----CGTAATCATATCTTACCTGCAAC---CAGTACTCCTTGGCTTTACGGCATTCATGCATTGACGATCATAAACCTATTGTGACA
Alignments
lowQualScore : 1111 111111111 11 2 111 111 33333333 1111111111111111 111111111 11111 111 1111111 44444444444444444444444444444444 11111111 111111 222222222222 11111 111 1111111 11 222 1111 111
lowQualScore : 6 4444 1 6 0 1 77 0 1 77 222222222 5 4 4 00 1 3 0 111 55 111 77 5 33333333 1 1 3 4444444444444444 1 1 2 0 55 0 666666666 8 0 2 11 0 1 4 4 4 4 11111 222 2 1 1 1 1 5 888 0 6666666 0 5 77777777777777777777777777777777 5 88888888 66 222222 222222222222 1 1 1 5 5 44444 0 3 1 0 5 0 4 1 66 66 8888 0 2 55 1 4 0 8 4 5 66 9999 0 5 5 5 555 11 9999999 888 33 66 1 77 000 0000 1 000 5 2 3
lowQualScore : . .... . . . . .. . . .. ......... . . . .. . . . ... .. ... .. . ........ . . . ................ . . . . .. . ......... . . . .. . . . . . . ..... ... . . . . . . ... . ....... . . ................................ . ........ .. ...... ............ . . . . . ..... . . . . . . . . .. .. .... . . .. . . . . . . .. .... . . . . ... .. ....... ... .. .. . .. ... .... . ... . . .
lowQualScore : 7 2222 7 6 1 4 66 5 1 55 555555555 0 3 0 88 0 8 4 777 00 777 77 7 33333333 1 9 7 8888888888888888 3 1 3 7 55 7 000000000 0 1 0 99 1 1 4 4 4 4 11111 222 9 9 9 1 0 0 888 8 2222222 2 6 00000000000000000000000000000000 0 11111111 99 888888 888888888888 7 4 6 7 3 33333 7 4 4 7 4 7 5 9 11 11 5555 7 3 55 0 0 6 9 4 4 11 4444 1 0 0 0 222 00 5555555 888 88 99 0 99 888 8888 0 000 7 3 0
consensus : ACACTGACCCAAAA-TGAAAACTTTACACTTTATAT----GTTTGAATATTTCTTTTGTTAACATACATGTTCCGAAACGTGTTATACATGGCTATCAGGATTTAATTGCGGATAATCATTATGCA-ATTTTTTTTCGAAATTTACGAAGTATTCATGCGTCCGAGCACAAA---A--A--ACGTTTTCCTT-ACTTTGCACGTGCGCAACATCCGGTTTTTCACTTACAGGTTTNACACCGACAAGTAATCATTCGTTGCTTAGCACAGATAAAAAAA---CTTAAATTTGT---TT-NAAAAA-AACAC--------TTTTATTTAGCGATGCCACGTCTTTCCGAAACTGAGAGAAATCAGGCTATTGGTATGCTCCGGGCCG--GGTCAT--TG---GTAAATACCGTTGCACGTCATTTTGGCTGTTCCAGATAGACTATTCATATTCTTGCGAACCGGTA--CAATACTACTGGAT---------ATGTCA-GAGATCGTGTCAGACCCGGTCGCGTACGTGCAACAACGTTACGTACTCATCGCGCT-ATTACG-TTGAC-T-CACCTA-----CGTAATCGTTTCTTACCTGCAAC---CAGTACTCCTTGGCGTTACGGTGTTCATGCACAGACGATCATAAACCGTTTGAGACAAAANC-GTGTTCCAATTCGTGCTCGTCGGCCATACACTGGTCA---GATTCCGACAGCGCGCCA-------CAGAGCT-----NT--------T---A------------TGGGCACGACGTCAT-T--------TGC--AATACACGCGAAACCAGTGGCAATGCCTCTGT------ATCCCC------------GAGCCTGAACCCCATAGAACACGTACGGAATGAATTGGGT-CGGA-----GGGTCAGGTCCAATCATCAAATTGATACCGTAAACGACCTCCGAAATGCACTTCTGTTGGAATGGCAACGTATTCCAAACACGCT--CATTCAA--CGTTA----CGTAAGTTCATAGAGATGA--CGTATTCAGGAATGCATTCGTAAAAAC-GGAGTCCACACTGGTTACTGACGTTTT-AAAAAAAT-CAGTTATTGCACTCA--GTCAGCACTTTATG----TCTTTTTCAAATGTTACGTGATCA-TTTTCAT-TTTTCTGGAATTTTCATTTTGACCCTTCTTCACTTAA-TT-G-TTAGAAAAAA---A---CA---TGCGATGTCTGA--TTT--TTTCCAGTAAATTACACAGAAACATTAATA--TAGCCATAAAGCTTCGATGAAAAC---TTTT--A-ACCCTGAATATATATTTATC---AGCAAAAGAGACACTTT-TAAAGTCGATGTAAAGTTTTCATTTTGGGTCAGTGTA
Reference ( family-217 ) : ACACTGACCCAAAA-TGAAAACTTTACACTTTATAT----GTTTGAATATTTCTTTTGTTAACATACATGTTCCGAAACGTGTTATACATGGCTATCAGGATTTAATTGCGGATAATCATTATGCA-ATTTTTTTTCGAAATTTACGAAGTATTCATGCGTCCGAGCACAAA---A--A--ACGTTTTCCTT-ACTTTGCACGTGCGCAACATCCGGTTTTTCACTTACAGGTTTNACACCGACAAGTAATCATTCGTTGCTTAGCACAGATAAAAAAA---CTTAAATTTGT---TT-NAAAAA-AACAC--------TTTTATTTAGCGATGCCACGTCTTTCCGAAACTGAGAGAAATCAGGCTATTGGTATGCTCCGGGCCG--GGTCAT--TG---GTAAATACCGTTGCACGTCATTTTGGCTGTTCCAGATAGACTATTCATATTCTTGCGAACCGGTA--CAATACTACTGGAT---------ATGTCA-GAGATCGTGTCAGACCCGGTCGCGTACGTGCAACAACGTTACGTACTCATCGCGCT-ATTACG-TTGAC-T-CACCTA-----CGTAATCGTTTCTTACCTGCAAC---CAGTACTCCTTGGCGTTACGGTGTTCATGCACAGACGATCATAAACCGTTTGAGACAAAANC-GTGTTCCAATTCGTGCTCGTCGGCCATACACTGGTCA---GATTCCGACAGCGCGCCA-------CAGAGCT-----NT--------T---A------------TGGGCACGACGTCAT-T--------TGC--AATACACGCGAAACCAGTGGCAATGCCTCTGT------ATCCCC------------GAGCCTGAACCCCATAGAACACGTATGGAATGAATTGGGT-CGGA-----GGGTCAGGTCCAATCATCAAATTGATACCATAAACGACCTCCGAAATGCACTTCTGTTGGAATGGCAACGTATTCCAAACACGCT--CATTCAA--CGTTA----CGTAAGTTCATAGAGATGA--CGTATTCAGGAATGCATTCGTAAAAAC-GGAGTCCACACTGGTTACTGACGTTTT-AAAAAAAT-CAGTTATTGCACTCA--GTCAGCACTTTATG----TCTTTTTCAAATGTTACGTGATCA-TTTTCAT-TTTTCTGGAATTTTCATTTTGACCCTTCTTCACTTAA-TT-G-TTAGAAAAAA---A---CA---TGCGATGTCTGA--TTT--TTTCCAGTAAATTACACAGANACATTAATA--TAGCCATAAAGCTTCGATGAAAAC---TTTT--A-ACCCTGAATATATATTTATC---AGCAAAAGAGATACTTT-TAAAGTCGATGTAAAGTTTTCATTTTGGGTCAGTGTA
gi|1 : ACACTGACCCAAAA-TAAAAACTTAACACGTTATAT----GTTTAAATATTTCTTCTGCTAACATACATGTTCGGAAACGTGTTATACATGGCTATCAGGATTCAATTGCGGATAATCATTA--CG-ATTTTTTTTCATAATTTCCGAATTATGCATGCATCCGAGCACAAA---AATA--ACGTTTTCCTT-ACTTTGGACGTGCGCAACATCC-GTTTTTTA---------TCGACACCGACAAGTAATCATTCGTTGCTTAGCGCAGAT-AAAAAA---CTTAAATTTGT---TT-AAAAAA-AACAC--------TTTTACTTAGTGATGCCACGTCTTTCTGAAACTGAGTGAAGTCGGGCTATTGGTA---TCCGGGACG--GGTCAT--TG---GTAAATACCGTTTCTC-TTATTTTGGCTGTTCCAGATAGACTATTCATATTCTTGCGAACCGGTA--CAACACTACTGGAT---------ATGTCA-GAGATAGTGTCAAACCCGGTTATGTATGTTCAAAATCGTTACGTACTCATCGCGAT-GTTACG-TTGATATACACCCA-----CGTAATTGTTTCTTACTTGCAAC---GAGTACTCCTGTATTTTACGATGTTCACGTACAGACGAGCATAAACTGTTTGAAACAAAAAC-CTGTTCCATTTCGTGCTCGTCGCACATACACTGGCCA---GTCTCCGACAGCGCGTCAGAGATTCCAGA-CT-----AT--------T---A------------TGAGCACGACGTC------------------ATACACGCGAAATCGGTGACAATGCCTCTGT------ATCCCC------------AAGCCTGAACCTCATAGAACACCTATGGAATGAATTGGGT-CAGA-----GGGTAATGTCTAATCATCAAATTGTTACCGTAAATGACCT-TGAAATGCACTTCTGTTGTAATGGCAATGTATTCCAAACACGCT--CGTTTAA--CGTTA----CGTAGGTTCATAGAGAGTA--CGTGTTCCGGAATGCATTTGTTAAAAC-GGAGTCGACACTGGTAACTGACGTTTTAAAAAAAAT-CAGTTATTGCAGTTACTGTCAGTACTTTTTG----TCTTTTTCAAATGTTAAATGATCA-TTTTCAT-TTTTCATCAATTTTCATTTTGACCCTTCTTCACTTAA-TT-G-TTAAAAAAAACCCA---CAACTTGCGATGTCTGA--TAT--TTCCCAGTAAATTACACAGACACATAATTA--TAGCCATAAAGCTTCGATGAAAAC---TTTTTAA-ATCCTGAATATACATTAATC---AGCAAACGAGATACTTT-TAAAGTCGATCTAAAGTTTTCATTTTGGGTCAGTGTA
gi|10 : cAGTGGTAATGCCTCTGT------ATCCCC------------GAGCCTGAACCCCATAGAACACGAATGGAATG---TGGGTGCGGATTGAGGGGTGGGG-------GTCAAATTGATATCATACACGATCTCCGAAATGCACTACTGAAGGAATTGCAACCTATTCCAAATACGGT--CATTTAG--CGTTA----CGTAAGTTCACAGAGATGA--CGTTTTCAGGAATGTATTTGTTAAAAC-GGAGTCCACGCTGATTAATGACGTTTT-AAAAATATTCAGTGATTGCACATA--GTC------------------TTTTCAAATGCTACATGATCAGTTTTAATATGTTCTGAAATTTTt
gi|11 : caGTTA----TATTGGCCTATAGAGATTA--CGTATTCAGGAATGCATTCGTAAATAC-G-AGGCTACATTGGTTAATGACGTTTT-TAAAAAAT-CAGTTATTGCACTAA--GTCAGCACTTTGTC----CCTTCTTCAA
gi|11 : tCACTTTGTCCCTTCTTCAATCAT-TT-T-TTAGAAAAAA---AAAACA---TGCGATGTCTGGGTTTT--TTTCCAGTAAATCACGCAGAAACATTAATA--TAGCCATAAAGCCTCGATGAAAAC---T----------CTGAACATATATTTAAC---AGAAACAACGATACTTT-TAAAATCGACGTAAAATTTTCAT------TCAGTGTAtcattttttagaaaaaaaaaacatgcgatgtctgggtttttttccagtaaatcacgcagaaacattaatatagccataaagcctcgatgaaaactctgaacatatatttaacagaaacaacgatacttttaaaatcgacgtaaaattttcattcagtgtata
gi|12 : tgttatattggcctatagagattacgtattcaggaatgcattcgtaaatacgaggctacattggttaatgacgtttttaaaaaatcagttattgcactaagtcagATAAACCATCTGAGACAAAAACCGTGTTCTAATTC-------CCGGCCATACACTGGTCA---GATTCCGACAGCACGCCA-------CAGGGCT-----TTCAGACTGTT---A------------TGGGCATGACGTCAT-T--------TGC--TGTACACGCAAAACCAGTGGAAATGCATCTGT------ATCTTC------------GAACCTGAACCACATAGAACACGTATGGAATGAAATAGGT-CGGA-----GGGTCAGGTCCAATAATCAAACTAATACta
gi|13 : ATGTCACGACTATCCGAAAATGACAGAAATCAGGCTGTCGGTATGCTTAGAACCG--G--CA---TGTCTGTAAATGACGTTGCTCTTCATTTTGGGTGCTCTAGGCAAACAATTCACAACCTGACAACTCGGTATGCA--ACTACTGG-------------GTCA-Ggtcatt
gi|14 : tttaagcagccacacgcactttttatcattgacacgaaaatacaatattgtttacagttttgactgaaaacgtaaTGAACAAAAA-TGAAAACTTTACGCTTTAAAC----GTTGGAATATTTCTTTTGTTAACATACATATTTCAAAACGTGTTATACATGGCTATCAGAATTTAATTGCGGATAATCATTATGTA-ATTATTTTTCGAAATTTACGAAGCATTAATGCGCCCGAGCACAAA---A--A--ATGTTTTCCTC-ACTTTGCACGTGCG---CATCCAGTTTTTCACTTACAGt
gi|15 : ataaTGTGTCAGATGGACTATTCATATCCTTGC----TGATA--CAATACTACCGAAT---------ATGTCA-GCGGTCGTGTCAGACCCGGCCGAGTACGTGCTACCACGTTACGTAATCATCGCGCTAAATACGTTTTTT-T-CACCTA-----CGTAATC-TTTCTTACCTGCAACCCACGGTACTCCTTGGCGTTATGGTGTTCATGAACAGACGATAATAAACCGTTT
gi|16 : tagaGTATTCAGAAATGCAT---------C-AGAGTCCACACTGGGCACCGACGCTTT-AAAAAA---CAGTGTTTGCACTCA--GACAGCACTTTATACTTTTTTTTTTAAAATGTTACGTGATCA-TTTTCAT-TTTTCTGGAATTTTTATATTGACCCTTCTTCACTTAATTT-T-TTAGAAAAAA---A---CA---TGCGACGTCTGA--TTT--TTTCCAGTAAATTACACAAAAA
gi|17 : CACTGACCCAAAAATGAAAACTTTACACTTTAAAT----GTTTGAATATTTCTTTTGCTAACAAACATGTCCTGAAACGTGTTATACATGGTTATCGGGATTTATTTGCGGATAATCATTATGCATTTTTTTTTTCGAAATTTA-AAAGTATTCATGCATCCGAGCAC-AA---A--A--ACGTTTTCCTT-ACTTT
gi|18 : AGGACAAATCATCAGATAAACAATGTCAACGATCTGAGACAAGCACTTCTTATTAAATGGCAGGCTCTCCCTAACGTCCT--CA--CAAGACGTTA----CGTAACTCCAT-GAG--GAACCGCATTATTGAATGCATCCGAAAGAAT-GACGGCCACACagatg
gi|19 : TTTAATTGCGGATAATCATTATGCA-ATTATTTTTTGAAATTTACGAAGTATTAATGCGCCCGAGCACAAA---A--A--ATGTTTTCCAC-ACTTTGCACGTGCG---CATCCAGTTTTTCACTTA
gi|2 : ACACTGACCCAAAA-TGATAACTTTACACTTTATATACATGTTTGAATATTTCTTTTGTTAACATACATATTCCAAAATGTGTTTTACATGGCTATCCGAATTTAATTGCGATTAATCATCATGCA-ATTTTTTTTAAAAATTTACAAAGTATTCATGCGTCCAAGCACAAA---A--A--ACGTATTCCTT-CCTTTGCATGTGCGCAACAACAGGTTTTTCACTTACAGGTTTAACACCAACAAGTACTCATTCGTTGCTTAACACATATAAAAAAA---CTTAAATTTGT---TT-TAAAA--AACAC--------TTTTATTTAGCGATGCCACGTCTTTCTTAAACTGAGAGAAATAAGACCCTTTGTATGCTCCAGTCTG--GGTCAT--TG---GTAAATACCGTTGCACGTCATTTTGGCTGTTCCAGATAGACTATTTATATTCTAGCAAACCGGTA--CAATACTACTGGAT---------ATGTCA-GAGATCATGTCAGACTTGGTCACTTAGGTGCAACAATATTACATACTCATTGTGCT-GTTATT-TTGAC-T-CACCGA-----TGTAATCATTTCTTACCTGCAACA--CA-TACTACTTGGCATGTCGATATTCATGCACAGACGATCATAAACTGTTTGAAATAAAAAC-ATATTCCAATTCGTGTTCGTCGGCCCTACACTGGTCA---GATTCCGACAGCGCGCCA-------CTGAGTT-----TT--------T---A------------TGGGCACAACGTCAT-T--------TGC--AATACATGCAAAACCAGTGGCAATGCCTTTAT------A-ACCC------------GAGCCTGAACCCCATAGAACACATACAGAATGAATTGGAT-CAAA-----TGGTCAGGTTCAAACATCAAAATAATACCATACACTATCTCCGAAATGCACTTCTGTTGGAATGGCAACATATTTCAAACACGCT--CATTTAA--CGTTA----CGTAAGTTCACAGAG----------------------------AAAACGGGAGTCCACACTGGTTACTGATGTTTT-AAAAAAAT-CAGTTATTGCACTTA--GCCAGCACTTTATG----TCTTTTTCAAATGTTACATGATCA-TTTTCAT-TGTTCTGGAATTTTCATTTTGACCCTTCTTCACTTAA-TT-GATCAGGAAAAA---A---CA---TGCGATGTCTAA--TTT--TTTCCAATAAATTATACAGACACATTAATA--TAGCCATAAAGCTTCAATGAAAAC---TTTT--ATAGCCTGAATATATATTTATC---AGCAAAAGAGACACTTT-T-AAGTCAATGTAAAGTTTTCATTTTAGGTCAGTGTAacaattgtcactgtaagtga
gi|20 : CACTGACCAAAAA-TGAAAACATTACACTTTATAT----GTATGAATA-----TTTATTAACA----------GAGATGTGTTACACATGGCTATCAGGATTTAATTG
gi|21 : TTTTTCCCCAAAATTTCTGAAGCATTCTTGCGTCAAAGCACA-A---A--A--ACATTTTCCTT-ACa
gi|22 : ttatggtgtGGCAGCTTATTCCAAACATGCT--CATACAA--CTTTA----CGTAAATTCAATGAGGTGA--CCTATTCcgt
gi|23 : c--TGGCAATAAAACTTCGATAAAAAC---TTTT--A-ACTCTGAATATGCATTTATC---AGTAAA
gi|24 : GCAAAAAAGATACTTTGTA--GTCGATATAA-GTTTTCATTTTGGGTCAAT
gi|3 : CTTTGCACATGCGCAACATCCACTTTTTCACTTCCAGGTTTTACACTGACTTGTAATCATTTGTTGCTTTGCACATACAAAAAAAAAAC---AATTTGT---TT-TAAAAA-AAAACAG------TTTTATTTGGCAATGCCACGTCTTTCTGAAACTGAGAGAAATCAGGCTATTGGTATGCTCCAGGCTATTGGT-AT--GG---GTAAATGCTGTTGGACGTCATTTTCGCTGTTCCAGATAGA--GTTCATATTCTTTCGAACAGGTA--CAATACTACTAGAT---------ATGTCAAGAGATCATGTCAGACCAGGTTGCGTACATGC------------------------T-ATTATG-CTGAC-T-CACCTAGGCTACGTAATCGTTTCTTACCTGCAAC---CAGGGCTCTTT----------TGTTCGTGCACA----ATTATAATCCGTTTTAGACAAAACT-GTGCTCCAATTTGTGCTCACTGGCCATACCCTGATCA---GATTCCAACAGCGCATCA-------CATA-CT-----AT--------T---A------------TGACCATGACGCAAT-T--------TGC--AATACATGCGAAACCAGTGGCAATGCCTCTGT------ATCCCCCCAACCCCCACTGAGCCTGAACCTCATAGAACATGTATGGAATGAATTGGGT-CTGT-----GAATCAGGTCCAATCATCAAGTTAATATCATAAACAACCTCTGAAATGAACTTCTG---------------------AACAAACT--CATTCAA--TGTTA----CGCAAGCTCAAAGAGATGG--CATATTCAGGAATGCATTTGTAAAAAC-GGAGGCCACACTGGTTACTGACATTTA-AAAAAAAA-CAGTTATTGCACT----GTCAGTGCTTTATG----TCTTTTTCAAGTGTAACATGATCA-ATTTCAT-TTTTCTGGAATTTTCATTCTGACGCTCCTTCACTTAA-TT-GTTTAGAAGAAA---AT--CA---TGCAATATCTGATTTTT--TTTCCAGTAAATTACACAGAAACATTACTA--CAGCCATTTATCTTCAACAAAAct
gi|3 : ATTTATCTTCAACAAAAGAGACGCTTT-TGAAGTCAATGTAAAGTTTTCAATTT--GTCAGTGgagacgcttttgaagtcaatgtaaagttttcaatttgtcagtgcgttataaa
gi|4 : ctttgcacatgcgcaacatccactttttcacttccaggttttacactgacttgtaatcatttgttgctttgcacatacaaaaaaaaaacaatttgttttaaaaaaaaacagttttatttggcaatgccacgtctttctgaaactgagagaaatcaggctattggtatgctccaggctattggtatgggtaaatgctgttggacgtcattttcgctgttccagatagagttcatattctttcgaacaggtacaatactactagatatgtcaagagatcatgtcagaccaggttgcgtacatgctattatgctgactcacctaggctacgtaatcgtttcttacctgcaaccagggctcttttgttcgtgcacaattataatccgttttagacaaaactgtgctccaatttgtgctcactggccataccctgatcagattccaacagcgcatcacatactattatgaccatgacgcaatttgcaatacatgcgaaaccagtggcaatgcctctgtatccccccaacccccactgagcctgaacctcatagaacatgtatggaatgaattgggtctgtgaatcaggtccaatcatcaagttaatatcataaacaacctctgaaatgaacttctgaacaaactcattcaatgttacgcaagctcaaagagatggcatattcaggaatgcatttgtaaaaacggaggccacactggttactgacatttaaaaaaaaacagttattgcactgtcagtgctttatgtctttttcaagtgtaacatgatcaatttcatttttctggaattttcattctgacgctccttcacttaattgtttagaagaaaatcatgcaatatctgattttttttccagtaaattacacagaaacattactacagccAAA---CT-AAATTTGTAGATT-TATAAATGACATCTGTTTAATTTTATTTAGCGATGCCACGTCTTTCTGAAACTGAGAGAAATCAGGCTATCTGTATGCTCCGGACCA--GGTCAT--TG---GTAAATACCGTTGGATGTCATTTTGTCTGTTCCAGACAGACACTTCATATTCTTACTAACCGGTA--CAATACTTCTGGATATGTCGGATATGTCA-GAGATCGTGTCAGACCCCGTCGTGTACGTGCATTAACGTTACGTACTCATCGCGCT-ATTACG-TTGAC-T-CACCTT-----CGTAATAGTTGTCTACCTGCAAC---CAGTACGCTTTAGTGTTATGGTGTTCATGCACATAGGATCTTAAACCGTTTGAGACAAAACC-CTGTTCCACTTCGTGCTCGTCGGCCATACATTTGTCA---GTTTCCGTCAGCGCGCCA-------CAGAGCT-----A---------T---G------------TGGGCACGACTTCAT-T--------TGC--AATACACACGAAACAAGTGGCAATACCTCTGT------ATCCCC------------GGGCCTGAACACCACATATCAAGTACGGAA---------T-C--------------------ATCA---AATTGATACTATAAACGACACCCGAAATGCACTTCTGTTGGAATGGCAACGTATTCCAAACACGCT--TATTCAA--CGTTA----CGTAAGTTCATAGAGATGA--CGTATTCAGGAATGCATTCCTAAAAAC-GGAGGCCACACTGGCGACTGACGTTTA-AAAATAAT-CGGTTATTTCACTCA--GTCAGCACTTTATG----TATTTCTCAAATGTTACGTGATCA-TTTTAAT-TTTTCTAATATTTTCATTTTGACTTTGCTC--CT----TT-G-T----------------CA---T-------------TTT--TTTCAAGTAAATTACACAGAAACA-TAATGTTTGGCAATCAGGCTTCGATGAAAACTTGTTTT--A-ACTCTGAATATATATTTATC---AGCAAAAGAGATAGTTT-TAAAGTCGATGTAAAGTTTTTATTTCGGGTCAGTGTAcgttataaa
gi|5 : -AAAAC--------TTTTATTTAAGGAGGCCACGTCTTTCCGAAAATGAGAGAAATCAGGT-----------------CTG--GGTCATACCG---ATAAATACCGTTGTACGTCATTCTTGCTGTTTCAGATAGACTATCTATATTCTTGCGAACCGGTA--CACTACTACTGGAT---------ATGTTAAGCGATCGTGTCAGACCCGGTCGCGTACGTGCAACAACGTCACGTTCTCATCGCGCT-ATTGCG-TTGAC-T-CACCTA-----CGTAATAGTTT-TTACCTGCAAC---ACGTACTCCTTTGCGTGTCGGTATTCATGCACAGACGATCATAAACCGTTTGAGATAAAAAC-GTGTTCCAATTCGTGCTCGTTGGCTCTACACTGGTCA---GATTCAGACAGCGCGCAA-------CCGATCT-----GT--------T---A------------TGGGCACGACGTTAT-T--------TGA--AATATACACGAAACCAGTGGCAATGTCTCTATAGCACGATCTCC------------GAttaa
gi|5 : ACGATCTCCGAAATGCACTTCTGTTCGAAAGGCAACGTATTTTAAACACGCT--AATTTAG--CGTTC----CGTAAGGTCACAGAGATGA--TGAATTCAGGAATGCATTCGTAAAAAC-GGAATTTACACTGGTTACTGACGTTTT-AAGAAAAT-CAGTTATTGCACTTA--GCCAGCACTTTATG----TATTTTTCAAATGTTACATGGTCA-TTTTCAT-TGCTCCGGAATTTTCATTTTGACCCTTCTTCACCTTA-TTAA-TCAGAAAAAA---A---CA---TGCGATGTCAGA--TGT--TTTCCAGTAAATAACACAG-CACATTAATA--TAGGCATAGAGCTTCAATGAGAGCTG-TTTT--A-GCCTTTAATATATATTTATC---AGCAAAAGAAACATTTT-TGAAGTCGGTGTAAAAGTTTCATTTTGGGTCAGTGTAaatgcacttctgttcgaaaggcaacgtattttaaacacgctaatttagcgttccgtaaggtcacagagatgatgaattcaggaatgcattcgtaaaaacggaatttacactggttactgacgttttaagaaaatcagttattgcacttagccagcactttatgtatttttcaaatgttacatggtcattttcattgctccggaattttcattttgacccttcttcaccttattaatcagaaaaaaacatgcgatgtcagatgttttccagtaaataacacagcacattaatataggcatagagcttcaatgagagctgttttagcctttaatatatatttatcagcaaaagaaacatttttgaagtcggtgtaaaagtttcattttgggtcagtgtagttt
gi|6 : aaaacttttatttaaggaggccacgtctttccgaaaatgagagaaatcaggtctgggtcataccgataaataccgttgtacgtcattcttgctgtttcagatagactatctatattcttgcgaaccggtacactactactggatatgttaagcgatcgtgtcagacccggtcgcgtacgtgcaacaacgtcacgttctcatcgcgctattgcgttgactcacctacgtaatagtttttacctgcaacacgtactcctttgcgtgtcggtattcatgcacagacgatcataaaccgtttgagataaaaacgtgttccaattcgtgctcgttggctctacactggtcagattcagacagcgcgcaaccgatctgttatgggcacgacgttatttgaaatatacacgaaaccagtggcaatgtctctatagcACACTGACCCAAAA-TAAAAACTTTACACTTAATAT----GTTTGAATATTTCCTTTGTTAACATACATGTTCAAAAGCGTGTTATAC-----------------ATTGCGGATAATCATTATGCA-TTTTTTCCTCAAAATTTCAGATGTATGTTTGCGTCCGAGCACAAA---C--ACTCCGTTTTCCTT-ACTTTGCACGTGTGCAACATCTGGTTTTTCACTAATAGGATTTACACCG-CGAGTAATCTTTTATTGCTTAGCACAGAT-AGAAAA---CTTTAATTTGT---TTAAAAAAA-AACAC--------TTTCATTAAGCGATCCCACATCTTTCCGAAACTGAGAGAAATCCGACTATTGGTATGCTCCGGGCC------------A---GTAAATACCGTTGCATGTCATTTTGGCTGTTCCAGATAGACTATTCATACTCTTGCGA----------------GCTTGAT---------ATGTCA-GAGATCGTGTCAGGCCCGGTCACATACGTGCAACAACGTTACG--------------AATACA-TTGAT-A-CACCTA-----AGTAATCGTTTCTTACCTGCAAC---TAGTACTCCTTGTCGTTACGGTATTCATGCTTACACGATCATAAACCGGTTGAAACAAAACC-GTGTTCCAATTCGTGCTCTTCGGCCATACACTGGTCAGATGATTCCGACAGCGCGCGA-------CATAGCTTCCAGAT--------TGGAA------------TGGGCACGATGCCATGTGAAATACATGCGAAATACACTCGAAATTAGTGGCAATGCCTCTGT------ATCCCC------------GAGCgttt
gi|7 : ATCTACAAC---CAGTTTTTCTTGGCAGAACGGTGTTCATGCATAGACAATCATAAACCGTTTGAGCCAAA-CC-GTGTTCCAATTCGTGCTCGTTGGCAATACACTTGCCA---GTATCAGACAGCCCGCCA-------CCGAGCT-----TT--------T---AAAGATTGGTTAATGGGCAAGACGTCGT-T--------TGC--AATACACGCAAATCCAGGGGCAATGCCTCTGT------AGCCCC------------GAGCTTGAACCCCATAGAAAACGTTTGGATAGAATTAGGT-CGGA-----GGGTCAGGTCCAATCATCAAACAGATACCAT
gi|7 : CAAACA-GATACCATTCAA--CGTTATTGACGTAAGTTCATAGAGATGA--CGTAAATAGGAATGCATTCGTAAAAAC-GGTGTCCACACTGGTTACTGACGTTTTTAAAACAAT-CAGTTATTACACTCA--GTCAACACTTTATG----TCTTTTTCAAATATTACGTGGTCA-TTTTTAT-TTTTCTGGAAATTTCATTTTGACCATTCTTCACTTAA-AT-A-TT-----------------------GATGTCTGA--TTTTCTTCCCAGTAAATTACACAGAAAtcaacgttattgacgtaagttcatagagatgacgtaaataggaatgcattcgtaaaaacggtgtccacactggttactgacgtttttaaaacaatcagttattacactcagtcaacactttatgtctttttcaaatattacgtggtcatttttatttttctggaaatttcattttgaccattcttcacttaaatattgatgtctgattttcttcccagtaaattacacagaaa
gi|8 : atctacaaccagtttttcttggcagaacggtgttcatgcatagacaatcataaaccgtttgagccaaaccgtgttccaattcgtgctcgttggcaatacacttgccagtatcagacagcccgccaccgagcttttaaagattggttaatgggcaagacgtcgtttgcaatacacgcaaatccaggggcaatgcctctgtagccccgagcttgaaccccatagaaaacgtttggatagaattaggtcggagggtcaggtccaatcatAATATGCCTTTTTTTAAATTTCATGTCCGGAAACGTGTTATACATGGCTGTCAGGATTTAATTGCGGATAATCAT--------------------------GAAGTATTCATGCGTCCGAACACAAATAAA--AC-ACGTTTTCTTTTACTTTGCACGTGCGCAACATCCGGGTTTTCACCTACAG----AAAACCGGCAAGTAATCATTTGTTGCTTGGCATGGGT------A---TTTGTTTTTAT---TT-AAAGAA-ATCA
gi|8 : AAAGAAATCAGGCTATTTGTATGCTCCGGACCG--GCTCAT--TG---GTATTTACCGTTGCGCGTCATTTT---TGTTCCAGATAGACTATTTAAATTCTTGCAAAACAGTG--CAATAC-----GTT---------ATAT---GAGATCGTGTCAGACC----CGCGTTCGTGCAACAACG-TACGTACTTA------A-ATTACG-TTGAC-T--A--TT-----CGTAATCGTTTCTTATCTACAAggctatttgtatgctccggaccggctcattggtatttaccgttgcgcgtcatttttgttccagatagactatttaaattcttgcaaaacagtgcaatacgttatatgagatcgtgtcagacccgcgttcgtgcaacaacgtacgtacttaaattacgttgactattcgtaatcgtttcttatctacaa
gi|9 : aatatgcctttttttaaatttcatgtccggaaacgtgttatacatggctgtcaggatttaattgcggataatcatgaagtattcatgcgtccgaacacaaataaaacacgttttcttttactttgcacgtgcgcaacatccgggttttcacctacagaaaaccggcaagtaatcatttgttgcttggcatgggtatttgtttttatttACTGAGAGAAATTAGGCTATTGGGATGCTCT-------------------------ATACCGTTGCTCGTCATTTTGACTGTTCCAGATAGACTATTCATATTCTTGCGAACCAGTA--CAATACTACAGGAT---------ATGTTA-GAGAAAGTGTGAGACTCGGTTATGTATGTGCAACGATGTTACGAACTCATCGCGCT-ATTCCG-TTGAT-T-CACTTA-----CGTAATCATATCTTACCTGCAAC---CAGTACTCCTTGGCTTTACGGCATTCATGCATTGACGATCATAAACCTATTGTGACA
Alignments
lowQualScore : 1111 111111111 11 2 111 111 33333333 1111111111111111 111111111 11111 111 1111111 44444444444444444444444444444444 11111111 111111 222222222222 11111 111 1111111 11 222 1111 111
lowQualScore : 6 4444 1 6 0 1 77 0 1 77 222222222 5 4 4 00 1 3 0 111 55 111 77 5 33333333 1 1 3 4444444444444444 1 1 2 0 55 0 666666666 8 0 2 11 0 1 4 4 4 4 11111 222 2 1 1 1 1 5 888 0 6666666 0 5 77777777777777777777777777777777 5 88888888 66 222222 222222222222 1 1 1 1 5 5 44444 0 3 1 1 0 5 0 4 1 66 66 8888 0 2 55 1 4 0 8 4 5 66 9999 0 5 5 5 555 11 9999999 888 33 66 77 000 0000 1 000 5 2 3
lowQualScore : . .... . . . . .. . . .. ......... . . . .. . . . ... .. ... .. . ........ . . . ................ . . . . .. . ......... . . . .. . . . . . . ..... ... . . . . . . ... . ....... . . ................................ . ........ .. ...... ............ . . . . . . ..... . . . . . . . . . .. .. .... . . .. . . . . . . .. .... . . . . ... .. ....... ... .. .. .. ... .... . ... . . .
lowQualScore : 7 2222 7 6 1 4 66 5 1 55 555555555 0 3 0 88 0 8 4 777 00 777 77 7 33333333 1 9 7 8888888888888888 3 1 3 7 55 7 000000000 0 1 0 99 1 1 4 4 4 4 11111 222 9 9 9 1 0 0 888 8 2222222 2 6 00000000000000000000000000000000 0 11111111 99 888888 888888888888 4 7 4 6 7 3 33333 7 4 4 4 7 4 7 5 9 11 11 5555 7 3 55 0 0 6 9 4 4 11 4444 1 0 0 0 222 00 5555555 888 88 99 99 888 8888 0 000 7 3 0
consensus : ACACTGACCCAAAA-TGAAAACTTTACACTTTATAT----GTTTGAATATTTCTTTTGTTAACATACATGTTCCGAAACGTGTTATACATGGCTATCAGGATTTAATTGCGGATAATCATTATGCA-ATTTTTTTTCGAAATTTACGAAGTATTCATGCGTCCGAGCACAAA---A--A--ACGTTTTCCTT-ACTTTGCACGTGCGCAACATCCGGTTTTTCACTTACAGGTTTNACACCGACAAGTAATCATTCGTTGCTTAGCACAGATAAAAAAA---CTTAAATTTGT---TT-NAAAAA-AACAC--------TTTTATTTAGCGATGCCACGTCTTTCCGAAACTGAGAGAAATCAGGCTATTGGTATGCTCCGGGCCG--GGTCAT--TG---GTAAATACCGTTGCACGTCATTTTGGCTGTTCCAGATAGACTATTCATATTCTTGCGAACCGGTA--CAATACTACTGGAT---------ATGTCA-GAGATCGTGTCAGACCCGGTCGCGTACGTGCAACAACGTTACGTACTCATCGCGCT-ATTACG-TTGAC-T-CACCTA-----CGTAATCGTTTCTTACCTGCAAC---CAGTACTCCTTGGCGTTACGGTGTTCATGCACAGACGATCATAAACCGTTTGAGACAAAANC-GTGTTCCAATTCGTGCTCGTCGGCCATACACTGGTCA---GATTCCGACAGCGCGCCA-------CAGAGCT-----NT--------T---A------------TGGGCACGACGTCAT-T--------TGC--AATACACGCGAAACCAGTGGCAATGCCTCTGT------ATCCCC------------GAGCCTGAACCCCATAGAACACGTACGGAATGAATTGGGT-CGGA-----GGGTCAGGTCCAATCATCAAATTGATACCGTAAACGACCTCCGAAATGCACTTCTGTTGGAATGGCAACGTATTCCAAACACGCT--CATTCAA--CGTTA----CGTAAGTTCATAGAGATGA--CGTATTCAGGAATGCATTCGTAAAAAC-GGAGTCCACACTGGTTACTGACGTTTT-AAAAAAAT-CAGTTATTGCACTCA--GTCAGCACTTTATG----TCTTTTTCAAATGTTACGTGATCA-TTTTCAT-TTTTCTGGAATTTTCATTTTGACCCTTCTTCACTTAA-TT-G-TTAGAAAAAA---A---CA---TGCGATGTCTGA--TTT--TTTCCAGTAAATTACACAGAAACATTAATA--TAGCCATAAAGCTTCGATGAAAAC---TTTT--A-ACCCTGAATATATATTTATC---AGCAAAAGAGACACTTT-TAAAGTCGATGTAAAGTTTTCATTTTGGGTCAGTGTA
Reference ( family-217 ) : ACACTGACCCAAAA-TGAAAACTTTACACTTTATAT----GTTTGAATATTTCTTTTGTTAACATACATGTTCCGAAACGTGTTATACATGGCTATCAGGATTTAATTGCGGATAATCATTATGCA-ATTTTTTTTCGAAATTTACGAAGTATTCATGCGTCCGAGCACAAA---A--A--ACGTTTTCCTT-ACTTTGCACGTGCGCAACATCCGGTTTTTCACTTACAGGTTTNACACCGACAAGTAATCATTCGTTGCTTAGCACAGATAAAAAAA---CTTAAATTTGT---TT-NAAAAA-AACAC--------TTTTATTTAGCGATGCCACGTCTTTCCGAAACTGAGAGAAATCAGGCTATTGGTATGCTCCGGGCCG--GGTCAT--TG---GTAAATACCGTTGCACGTCATTTTGGCTGTTCCAGATAGACTATTCATATTCTTGCGAACCGGTA--CAATACTACTGGAT---------ATGTCA-GAGATCGTGTCAGACCCGGTCGCGTACGTGCAACAACGTTACGTACTCATCGCGCT-ATTACG-TTGAC-T-CACCTA-----CGTAATCGTTTCTTACCTGCAAC---CAGTACTCCTTGGCGTTACGGTGTTCATGCACAGACGATCATAAACCGTTTGAGACAAAANC-GTGTTCCAATTCGTGCTCGTCGGCCATACACTGGTCA---GATTCCGACAGCGCGCCA-------CAGAGCT-----NT--------T---A------------TGGGCACGACGTCAT-T--------TGC--AATACACGCGAAACCAGTGGCAATGCCTCTGT------ATCCCC------------GAGCCTGAACCCCATAGAACACGTACGGAATGAATTGGGT-CGGA-----GGGTCAGGTCCAATCATCAAATTGATACCGTAAACGACCTCCGAAATGCACTTCTGTTGGAATGGCAACGTATTCCAAACACGCT--CATTCAA--CGTTA----CGTAAGTTCATAGAGATGA--CGTATTCAGGAATGCATTCGTAAAAAC-GGAGTCCACACTGGTTACTGACGTTTT-AAAAAAAT-CAGTTATTGCACTCA--GTCAGCACTTTATG----TCTTTTTCAAATGTTACGTGATCA-TTTTCAT-TTTTCTGGAATTTTCATTTTGACCCTTCTTCACTTAA-TT-G-TTAGAAAAAA---A---CA---TGCGATGTCTGA--TTT--TTTCCAGTAAATTACACAGAAACATTAATA--TAGCCATAAAGCTTCGATGAAAAC---TTTT--A-ACCCTGAATATATATTTATC---AGCAAAAGAGACACTTT-TAAAGTCGATGTAAAGTTTTCATTTTGGGTCAGTGTA
gi|1 : ACACTGACCCAAAA-TAAAAACTTAACACGTTATAT----GTTTAAATATTTCTTCTGCTAACATACATGTTCGGAAACGTGTTATACATGGCTATCAGGATTCAATTGCGGATAATCATTA--CG-ATTTTTTTTCATAATTTCCGAATTATGCATGCATCCGAGCACAAA---AATA--ACGTTTTCCTT-ACTTTGGACGTGCGCAACATCC-GTTTTTTA---------TCGACACCGACAAGTAATCATTCGTTGCTTAGCGCAGAT-AAAAAA---CTTAAATTTGT---TT-AAAAAA-AACAC--------TTTTACTTAGTGATGCCACGTCTTTCTGAAACTGAGTGAAGTCGGGCTATTGGTA---TCCGGGACG--GGTCAT--TG---GTAAATACCGTTTCTC-TTATTTTGGCTGTTCCAGATAGACTATTCATATTCTTGCGAACCGGTA--CAACACTACTGGAT---------ATGTCA-GAGATAGTGTCAAACCCGGTTATGTATGTTCAAAATCGTTACGTACTCATCGCGAT-GTTACG-TTGATATACACCCA-----CGTAATTGTTTCTTACTTGCAAC---GAGTACTCCTGTATTTTACGATGTTCACGTACAGACGAGCATAAACTGTTTGAAACAAAAAC-CTGTTCCATTTCGTGCTCGTCGCACATACACTGGCCA---GTCTCCGACAGCGCGTCAGAGATTCCAGA-CT-----AT--------T---A------------TGAGCACGACGTC------------------ATACACGCGAAATCGGTGACAATGCCTCTGT------ATCCCC------------AAGCCTGAACCTCATAGAACACCTATGGAATGAATTGGGT-CAGA-----GGGTAATGTCTAATCATCAAATTGTTACCGTAAATGACCT-TGAAATGCACTTCTGTTGTAATGGCAATGTATTCCAAACACGCT--CGTTTAA--CGTTA----CGTAGGTTCATAGAGAGTA--CGTGTTCCGGAATGCATTTGTTAAAAC-GGAGTCGACACTGGTAACTGACGTTTTAAAAAAAAT-CAGTTATTGCAGTTACTGTCAGTACTTTTTG----TCTTTTTCAAATGTTAAATGATCA-TTTTCAT-TTTTCATCAATTTTCATTTTGACCCTTCTTCACTTAA-TT-G-TTAAAAAAAACCCA---CAACTTGCGATGTCTGA--TAT--TTCCCAGTAAATTACACAGACACATAATTA--TAGCCATAAAGCTTCGATGAAAAC---TTTTTAA-ATCCTGAATATACATTAATC---AGCAAACGAGATACTTT-TAAAGTCGATCTAAAGTTTTCATTTTGGGTCAGTGTA
gi|10 : cAGTGGTAATGCCTCTGT------ATCCCC------------GAGCCTGAACCCCATAGAACACGAATGGAATG---TGGGTGCGGATTGAGGGGTGGGG-------GTCAAATTGATATCATACACGATCTCCGAAATGCACTACTGAAGGAATTGCAACCTATTCCAAATACGGT--CATTTAG--CGTTA----CGTAAGTTCACAGAGATGA--CGTTTTCAGGAATGTATTTGTTAAAAC-GGAGTCCACGCTGATTAATGACGTTTT-AAAAATATTCAGTGATTGCACATA--GTC------------------TTTTCAAATGCTACATGATCAGTTTTAATATGTTCTGAAATTTTt
gi|11 : caGTTA----TATTGGCCTATAGAGATTA--CGTATTCAGGAATGCATTCGTAAATAC-G-AGGCTACATTGGTTAATGACGTTTT-TAAAAAAT-CAGTTATTGCACTAA--GTCAGCACTTTGTC----CCTTCTTCAA
gi|11 : tCACTTTGTCCCTTCTTCAATCAT-TT-T-TTAGAAAAAA---AAAACA---TGCGATGTCTGGGTTTT--TTTCCAGTAAATCACGCAGAAACATTAATA--TAGCCATAAAGCCTCGATGAAAAC---T----------CTGAACATATATTTAAC---AGAAACAACGATACTTT-TAAAATCGACGTAAAATTTTCAT------TCAGTGTAtcattttttagaaaaaaaaaacatgcgatgtctgggtttttttccagtaaatcacgcagaaacattaatatagccataaagcctcgatgaaaactctgaacatatatttaacagaaacaacgatacttttaaaatcgacgtaaaattttcattcagtgtata
gi|12 : tgttatattggcctatagagattacgtattcaggaatgcattcgtaaatacgaggctacattggttaatgacgtttttaaaaaatcagttattgcactaagtcagATAAACCATCTGAGACAAAAACCGTGTTCTAATTC-------CCGGCCATACACTGGTCA---GATTCCGACAGCACGCCA-------CAGGGCT-----TTCAGACTGTT---A------------TGGGCATGACGTCAT-T--------TGC--TGTACACGCAAAACCAGTGGAAATGCATCTGT------ATCTTC------------GAACCTGAACCACATAGAACACGTATGGAATGAAATAGGT-CGGA-----GGGTCAGGTCCAATAATCAAACTAATACta
gi|13 : ATGTCACGACTATCCGAAAATGACAGAAATCAGGCTGTCGGTATGCTTAGAACCG--G--CA---TGTCTGTAAATGACGTTGCTCTTCATTTTGGGTGCTCTAGGCAAACAATTCACAACCTGACAACTCGGTATGCA--ACTACTGG-------------GTCA-Ggtcatt
gi|14 : tttaagcagccacacgcactttttatcattgacacgaaaatacaatattgtttacagttttgactgaaaacgtaaTGAACAAAAA-TGAAAACTTTACGCTTTAAAC----GTTGGAATATTTCTTTTGTTAACATACATATTTCAAAACGTGTTATACATGGCTATCAGAATTTAATTGCGGATAATCATTATGTA-ATTATTTTTCGAAATTTACGAAGCATTAATGCGCCCGAGCACAAA---A--A--ATGTTTTCCTC-ACTTTGCACGTGCG---CATCCAGTTTTTCACTTACAGt
gi|15 : ataaTGTGTCAGATGGACTATTCATATCCTTGC----TGATA--CAATACTACCGAAT---------ATGTCA-GCGGTCGTGTCAGACCCGGCCGAGTACGTGCTACCACGTTACGTAATCATCGCGCTAAATACGTTTTTT-T-CACCTA-----CGTAATC-TTTCTTACCTGCAACCCACGGTACTCCTTGGCGTTATGGTGTTCATGAACAGACGATAATAAACCGTTT
gi|16 : tagaGTATTCAGAAATGCAT---------C-AGAGTCCACACTGGGCACCGACGCTTT-AAAAAA---CAGTGTTTGCACTCA--GACAGCACTTTATACTTTTTTTTTTAAAATGTTACGTGATCA-TTTTCAT-TTTTCTGGAATTTTTATATTGACCCTTCTTCACTTAATTT-T-TTAGAAAAAA---A---CA---TGCGACGTCTGA--TTT--TTTCCAGTAAATTACACAAAAA
gi|17 : CACTGACCCAAAAATGAAAACTTTACACTTTAAAT----GTTTGAATATTTCTTTTGCTAACAAACATGTCCTGAAACGTGTTATACATGGTTATCGGGATTTATTTGCGGATAATCATTATGCATTTTTTTTTTCGAAATTTA-AAAGTATTCATGCATCCGAGCAC-AA---A--A--ACGTTTTCCTT-ACTTT
gi|18 : AGGACAAATCATCAGATAAACAATGTCAACGATCTGAGACAAGCACTTCTTATTAAATGGCAGGCTCTCCCTAACGTCCT--CA--CAAGACGTTA----CGTAACTCCAT-GAG--GAACCGCATTATTGAATGCATCCGAAAGAAT-GACGGCCACACagatg
gi|19 : TTTAATTGCGGATAATCATTATGCA-ATTATTTTTTGAAATTTACGAAGTATTAATGCGCCCGAGCACAAA---A--A--ATGTTTTCCAC-ACTTTGCACGTGCG---CATCCAGTTTTTCACTTA
gi|2 : ACACTGACCCAAAA-TGATAACTTTACACTTTATATACATGTTTGAATATTTCTTTTGTTAACATACATATTCCAAAATGTGTTTTACATGGCTATCCGAATTTAATTGCGATTAATCATCATGCA-ATTTTTTTTAAAAATTTACAAAGTATTCATGCGTCCAAGCACAAA---A--A--ACGTATTCCTT-CCTTTGCATGTGCGCAACAACAGGTTTTTCACTTACAGGTTTAACACCAACAAGTACTCATTCGTTGCTTAACACATATAAAAAAA---CTTAAATTTGT---TT-TAAAA--AACAC--------TTTTATTTAGCGATGCCACGTCTTTCTTAAACTGAGAGAAATAAGACCCTTTGTATGCTCCAGTCTG--GGTCAT--TG---GTAAATACCGTTGCACGTCATTTTGGCTGTTCCAGATAGACTATTTATATTCTAGCAAACCGGTA--CAATACTACTGGAT---------ATGTCA-GAGATCATGTCAGACTTGGTCACTTAGGTGCAACAATATTACATACTCATTGTGCT-GTTATT-TTGAC-T-CACCGA-----TGTAATCATTTCTTACCTGCAACA--CA-TACTACTTGGCATGTCGATATTCATGCACAGACGATCATAAACTGTTTGAAATAAAAAC-ATATTCCAATTCGTGTTCGTCGGCCCTACACTGGTCA---GATTCCGACAGCGCGCCA-------CTGAGTT-----TT--------T---A------------TGGGCACAACGTCAT-T--------TGC--AATACATGCAAAACCAGTGGCAATGCCTTTAT------A-ACCC------------GAGCCTGAACCCCATAGAACACATACAGAATGAATTGGAT-CAAA-----TGGTCAGGTTCAAACATCAAAATAATACCATACACTATCTCCGAAATGCACTTCTGTTGGAATGGCAACATATTTCAAACACGCT--CATTTAA--CGTTA----CGTAAGTTCACAGAG----------------------------AAAACGGGAGTCCACACTGGTTACTGATGTTTT-AAAAAAAT-CAGTTATTGCACTTA--GCCAGCACTTTATG----TCTTTTTCAAATGTTACATGATCA-TTTTCAT-TGTTCTGGAATTTTCATTTTGACCCTTCTTCACTTAA-TT-GATCAGGAAAAA---A---CA---TGCGATGTCTAA--TTT--TTTCCAATAAATTATACAGACACATTAATA--TAGCCATAAAGCTTCAATGAAAAC---TTTT--ATAGCCTGAATATATATTTATC---AGCAAAAGAGACACTTT-T-AAGTCAATGTAAAGTTTTCATTTTAGGTCAGTGTAacaattgtcactgtaagtga
gi|20 : CACTGACCAAAAA-TGAAAACATTACACTTTATAT----GTATGAATA-----TTTATTAACA----------GAGATGTGTTACACATGGCTATCAGGATTTAATTG
gi|21 : TTTTTCCCCAAAATTTCTGAAGCATTCTTGCGTCAAAGCACA-A---A--A--ACATTTTCCTT-ACa
gi|22 : ttatggtgtGGCAGCTTATTCCAAACATGCT--CATACAA--CTTTA----CGTAAATTCAATGAGGTGA--CCTATTCcgt
gi|23 : c--TGGCAATAAAACTTCGATAAAAAC---TTTT--A-ACTCTGAATATGCATTTATC---AGTAAA
gi|24 : GCAAAAAAGATACTTTGTA--GTCGATATAA-GTTTTCATTTTGGGTCAAT
gi|3 : CTTTGCACATGCGCAACATCCACTTTTTCACTTCCAGGTTTTACACTGACTTGTAATCATTTGTTGCTTTGCACATACAAAAAAAAAAC---AATTTGT---TT-TAAAAA-AAAACAG------TTTTATTTGGCAATGCCACGTCTTTCTGAAACTGAGAGAAATCAGGCTATTGGTATGCTCCAGGCTATTGGT-AT--GG---GTAAATGCTGTTGGACGTCATTTTCGCTGTTCCAGATAGA--GTTCATATTCTTTCGAACAGGTA--CAATACTACTAGAT---------ATGTCAAGAGATCATGTCAGACCAGGTTGCGTACATGC------------------------T-ATTATG-CTGAC-T-CACCTAGGCTACGTAATCGTTTCTTACCTGCAAC---CAGGGCTCTTT----------TGTTCGTGCACA----ATTATAATCCGTTTTAGACAAAACT-GTGCTCCAATTTGTGCTCACTGGCCATACCCTGATCA---GATTCCAACAGCGCATCA-------CATA-CT-----AT--------T---A------------TGACCATGACGCAAT-T--------TGC--AATACATGCGAAACCAGTGGCAATGCCTCTGT------ATCCCCCCAACCCCCACTGAGCCTGAACCTCATAGAACATGTATGGAATGAATTGGGT-CTGT-----GAATCAGGTCCAATCATCAAGTTAATATCATAAACAACCTCTGAAATGAACTTCTG---------------------AACAAACT--CATTCAA--TGTTA----CGCAAGCTCAAAGAGATGG--CATATTCAGGAATGCATTTGTAAAAAC-GGAGGCCACACTGGTTACTGACATTTA-AAAAAAAA-CAGTTATTGCACT----GTCAGTGCTTTATG----TCTTTTTCAAGTGTAACATGATCA-ATTTCAT-TTTTCTGGAATTTTCATTCTGACGCTCCTTCACTTAA-TT-GTTTAGAAGAAA---AT--CA---TGCAATATCTGATTTTT--TTTCCAGTAAATTACACAGAAACATTACTA--CAGCCATTTATCTTCAACAAAAct
gi|3 : ATTTATCTTCAACAAAAGAGACGCTTT-TGAAGTCAATGTAAAGTTTTCAATTT--GTCAGTGgagacgcttttgaagtcaatgtaaagttttcaatttgtcagtgcgttataaa
gi|4 : ctttgcacatgcgcaacatccactttttcacttccaggttttacactgacttgtaatcatttgttgctttgcacatacaaaaaaaaaacaatttgttttaaaaaaaaacagttttatttggcaatgccacgtctttctgaaactgagagaaatcaggctattggtatgctccaggctattggtatgggtaaatgctgttggacgtcattttcgctgttccagatagagttcatattctttcgaacaggtacaatactactagatatgtcaagagatcatgtcagaccaggttgcgtacatgctattatgctgactcacctaggctacgtaatcgtttcttacctgcaaccagggctcttttgttcgtgcacaattataatccgttttagacaaaactgtgctccaatttgtgctcactggccataccctgatcagattccaacagcgcatcacatactattatgaccatgacgcaatttgcaatacatgcgaaaccagtggcaatgcctctgtatccccccaacccccactgagcctgaacctcatagaacatgtatggaatgaattgggtctgtgaatcaggtccaatcatcaagttaatatcataaacaacctctgaaatgaacttctgaacaaactcattcaatgttacgcaagctcaaagagatggcatattcaggaatgcatttgtaaaaacggaggccacactggttactgacatttaaaaaaaaacagttattgcactgtcagtgctttatgtctttttcaagtgtaacatgatcaatttcatttttctggaattttcattctgacgctccttcacttaattgtttagaagaaaatcatgcaatatctgattttttttccagtaaattacacagaaacattactacagccAAA---CT-AAATTTGTAGATT-TATAAATGACATCTGTTTAATTTTATTTAGCGATGCCACGTCTTTCTGAAACTGAGAGAAATCAGGCTATCTGTATGCTCCGGACCA--GGTCAT--TG---GTAAATACCGTTGGATGTCATTTTGTCTGTTCCAGACAGACACTTCATATTCTTACTAACCGGTA--CAATACTTCTGGATATGTCGGATATGTCA-GAGATCGTGTCAGACCCCGTCGTGTACGTGCATTAACGTTACGTACTCATCGCGCT-ATTACG-TTGAC-T-CACCTT-----CGTAATAGTTGTCTACCTGCAAC---CAGTACGCTTTAGTGTTATGGTGTTCATGCACATAGGATCTTAAACCGTTTGAGACAAAACC-CTGTTCCACTTCGTGCTCGTCGGCCATACATTTGTCA---GTTTCCGTCAGCGCGCCA-------CAGAGCT-----A---------T---G------------TGGGCACGACTTCAT-T--------TGC--AATACACACGAAACAAGTGGCAATACCTCTGT------ATCCCC------------GGGCCTGAACACCACATATCAAGTACGGAA---------T-C--------------------ATCA---AATTGATACTATAAACGACACCCGAAATGCACTTCTGTTGGAATGGCAACGTATTCCAAACACGCT--TATTCAA--CGTTA----CGTAAGTTCATAGAGATGA--CGTATTCAGGAATGCATTCCTAAAAAC-GGAGGCCACACTGGCGACTGACGTTTA-AAAATAAT-CGGTTATTTCACTCA--GTCAGCACTTTATG----TATTTCTCAAATGTTACGTGATCA-TTTTAAT-TTTTCTAATATTTTCATTTTGACTTTGCTC--CT----TT-G-T----------------CA---T-------------TTT--TTTCAAGTAAATTACACAGAAACA-TAATGTTTGGCAATCAGGCTTCGATGAAAACTTGTTTT--A-ACTCTGAATATATATTTATC---AGCAAAAGAGATAGTTT-TAAAGTCGATGTAAAGTTTTTATTTCGGGTCAGTGTAcgttataaa
gi|5 : -AAAAC--------TTTTATTTAAGGAGGCCACGTCTTTCCGAAAATGAGAGAAATCAGGT-----------------CTG--GGTCATACCG---ATAAATACCGTTGTACGTCATTCTTGCTGTTTCAGATAGACTATCTATATTCTTGCGAACCGGTA--CACTACTACTGGAT---------ATGTTAAGCGATCGTGTCAGACCCGGTCGCGTACGTGCAACAACGTCACGTTCTCATCGCGCT-ATTGCG-TTGAC-T-CACCTA-----CGTAATAGTTT-TTACCTGCAAC---ACGTACTCCTTTGCGTGTCGGTATTCATGCACAGACGATCATAAACCGTTTGAGATAAAAAC-GTGTTCCAATTCGTGCTCGTTGGCTCTACACTGGTCA---GATTCAGACAGCGCGCAA-------CCGATCT-----GT--------T---A------------TGGGCACGACGTTAT-T--------TGA--AATATACACGAAACCAGTGGCAATGTCTCTATAGCACGATCTCC------------GAttaa
gi|5 : ACGATCTCCGAAATGCACTTCTGTTCGAAAGGCAACGTATTTTAAACACGCT--AATTTAG--CGTTC----CGTAAGGTCACAGAGATGA--TGAATTCAGGAATGCATTCGTAAAAAC-GGAATTTACACTGGTTACTGACGTTTT-AAGAAAAT-CAGTTATTGCACTTA--GCCAGCACTTTATG----TATTTTTCAAATGTTACATGGTCA-TTTTCAT-TGCTCCGGAATTTTCATTTTGACCCTTCTTCACCTTA-TTAA-TCAGAAAAAA---A---CA---TGCGATGTCAGA--TGT--TTTCCAGTAAATAACACAG-CACATTAATA--TAGGCATAGAGCTTCAATGAGAGCTG-TTTT--A-GCCTTTAATATATATTTATC---AGCAAAAGAAACATTTT-TGAAGTCGGTGTAAAAGTTTCATTTTGGGTCAGTGTAaatgcacttctgttcgaaaggcaacgtattttaaacacgctaatttagcgttccgtaaggtcacagagatgatgaattcaggaatgcattcgtaaaaacggaatttacactggttactgacgttttaagaaaatcagttattgcacttagccagcactttatgtatttttcaaatgttacatggtcattttcattgctccggaattttcattttgacccttcttcaccttattaatcagaaaaaaacatgcgatgtcagatgttttccagtaaataacacagcacattaatataggcatagagcttcaatgagagctgttttagcctttaatatatatttatcagcaaaagaaacatttttgaagtcggtgtaaaagtttcattttgggtcagtgtagttt
gi|6 : aaaacttttatttaaggaggccacgtctttccgaaaatgagagaaatcaggtctgggtcataccgataaataccgttgtacgtcattcttgctgtttcagatagactatctatattcttgcgaaccggtacactactactggatatgttaagcgatcgtgtcagacccggtcgcgtacgtgcaacaacgtcacgttctcatcgcgctattgcgttgactcacctacgtaatagtttttacctgcaacacgtactcctttgcgtgtcggtattcatgcacagacgatcataaaccgtttgagataaaaacgtgttccaattcgtgctcgttggctctacactggtcagattcagacagcgcgcaaccgatctgttatgggcacgacgttatttgaaatatacacgaaaccagtggcaatgtctctatagcACACTGACCCAAAA-TAAAAACTTTACACTTAATAT----GTTTGAATATTTCCTTTGTTAACATACATGTTCAAAAGCGTGTTATAC-----------------ATTGCGGATAATCATTATGCA-TTTTTTCCTCAAAATTTCAGATGTATGTTTGCGTCCGAGCACAAA---C--ACTCCGTTTTCCTT-ACTTTGCACGTGTGCAACATCTGGTTTTTCACTAATAGGATTTACACCG-CGAGTAATCTTTTATTGCTTAGCACAGAT-AGAAAA---CTTTAATTTGT---TTAAAAAAA-AACAC--------TTTCATTAAGCGATCCCACATCTTTCCGAAACTGAGAGAAATCCGACTATTGGTATGCTCCGGGCC------------A---GTAAATACCGTTGCATGTCATTTTGGCTGTTCCAGATAGACTATTCATACTCTTGCGA----------------GCTTGAT---------ATGTCA-GAGATCGTGTCAGGCCCGGTCACATACGTGCAACAACGTTACG--------------AATACA-TTGAT-A-CACCTA-----AGTAATCGTTTCTTACCTGCAAC---TAGTACTCCTTGTCGTTACGGTATTCATGCTTACACGATCATAAACCGGTTGAAACAAAACC-GTGTTCCAATTCGTGCTCTTCGGCCATACACTGGTCAGATGATTCCGACAGCGCGCGA-------CATAGCTTCCAGAT--------TGGAA------------TGGGCACGATGCCATGTGAAATACATGCGAAATACACTCGAAATTAGTGGCAATGCCTCTGT------ATCCCC------------GAGCgttt
gi|7 : ATCTACAAC---CAGTTTTTCTTGGCAGAACGGTGTTCATGCATAGACAATCATAAACCGTTTGAGCCAAA-CC-GTGTTCCAATTCGTGCTCGTTGGCAATACACTTGCCA---GTATCAGACAGCCCGCCA-------CCGAGCT-----TT--------T---AAAGATTGGTTAATGGGCAAGACGTCGT-T--------TGC--AATACACGCAAATCCAGGGGCAATGCCTCTGT------AGCCCC------------GAGCTTGAACCCCATAGAAAACGTTTGGATAGAATTAGGT-CGGA-----GGGTCAGGTCCAATCATCAAACAGATACCAT
gi|7 : CAAACA-GATACCATTCAA--CGTTATTGACGTAAGTTCATAGAGATGA--CGTAAATAGGAATGCATTCGTAAAAAC-GGTGTCCACACTGGTTACTGACGTTTTTAAAACAAT-CAGTTATTACACTCA--GTCAACACTTTATG----TCTTTTTCAAATATTACGTGGTCA-TTTTTAT-TTTTCTGGAAATTTCATTTTGACCATTCTTCACTTAA-AT-A-TT-----------------------GATGTCTGA--TTTTCTTCCCAGTAAATTACACAGAAAtcaacgttattgacgtaagttcatagagatgacgtaaataggaatgcattcgtaaaaacggtgtccacactggttactgacgtttttaaaacaatcagttattacactcagtcaacactttatgtctttttcaaatattacgtggtcatttttatttttctggaaatttcattttgaccattcttcacttaaatattgatgtctgattttcttcccagtaaattacacagaaa
gi|8 : atctacaaccagtttttcttggcagaacggtgttcatgcatagacaatcataaaccgtttgagccaaaccgtgttccaattcgtgctcgttggcaatacacttgccagtatcagacagcccgccaccgagcttttaaagattggttaatgggcaagacgtcgtttgcaatacacgcaaatccaggggcaatgcctctgtagccccgagcttgaaccccatagaaaacgtttggatagaattaggtcggagggtcaggtccaatcatAATATGCCTTTTTTTAAATTTCATGTCCGGAAACGTGTTATACATGGCTGTCAGGATTTAATTGCGGATAATCAT--------------------------GAAGTATTCATGCGTCCGAACACAAATAAA--AC-ACGTTTTCTTTTACTTTGCACGTGCGCAACATCCGGGTTTTCACCTACAG----AAAACCGGCAAGTAATCATTTGTTGCTTGGCATGGGT------A---TTTGTTTTTAT---TT-AAAGAA-ATCA
gi|8 : AAAGAAATCAGGCTATTTGTATGCTCCGGACCG--GCTCAT--TG---GTATTTACCGTTGCGCGTCATTTT---TGTTCCAGATAGACTATTTAAATTCTTGCAAAACAGTG--CAATAC-----GTT---------ATAT---GAGATCGTGTCAGACC----CGCGTTCGTGCAACAACG-TACGTACTTA------A-ATTACG-TTGAC-T--A--TT-----CGTAATCGTTTCTTATCTACAAggctatttgtatgctccggaccggctcattggtatttaccgttgcgcgtcatttttgttccagatagactatttaaattcttgcaaaacagtgcaatacgttatatgagatcgtgtcagacccgcgttcgtgcaacaacgtacgtacttaaattacgttgactattcgtaatcgtttcttatctacaa
gi|9 : aatatgcctttttttaaatttcatgtccggaaacgtgttatacatggctgtcaggatttaattgcggataatcatgaagtattcatgcgtccgaacacaaataaaacacgttttcttttactttgcacgtgcgcaacatccgggttttcacctacagaaaaccggcaagtaatcatttgttgcttggcatgggtatttgtttttatttACTGAGAGAAATTAGGCTATTGGGATGCTCT-------------------------ATACCGTTGCTCGTCATTTTGACTGTTCCAGATAGACTATTCATATTCTTGCGAACCAGTA--CAATACTACAGGAT---------ATGTTA-GAGAAAGTGTGAGACTCGGTTATGTATGTGCAACGATGTTACGAACTCATCGCGCT-ATTCCG-TTGAT-T-CACTTA-----CGTAATCATATCTTACCTGCAAC---CAGTACTCCTTGGCTTTACGGCATTCATGCATTGACGATCATAAACCTATTGTGACA
blockSeqs : A ACAT T C T TT G AC TAAAAC T C A GT A A A AAA TA AGA AA T CTGTTTAA G G A GGGTCATACCG T G A TG ATGTCGGAT A T TC C A T . . GGCTA CCA G G T G A C GAT . G TTTAAAGATTGGTTAA G GAAATACA GA AGCACG CCAACCCCCACT T T A A G G TTGAG T C A A C C AC GA TTGA A AC T G T T T . CTTT G A T GA TA AAAA . GT TC TT TTG AT G TTC G A A
blockSeqs : . . A T T A G AC CACT . C A GT T A A . TT . T . AG T A T ATTGGTATGG A G A . . A T TT C . . . . . A G A G G A . . . G TTCAGACTGTTA . . . . . T T A T . G . A A G A C T . . . A . A . . . A . . . . . GT TA AT . TT . . TG A C . . A G
blockSeqs : . . T C T A G AC AA . C G GA T G . . TG . T . . G A G GGCATGTCT A C G . . . T TC C . . . . . . A G T T C . . . G TCCAGATTGGAA . . . . . C T A T . A . T C A T A C . . . G . A . . . C . . . . . AA CA A . . . . . A C . . G G
blockSeqs : . . T A T A A CT AA . C A . A . . . A . T . . T G A GGGTCATTG A G T . . . T TC C . . . . . . T G G G C . . . T TTTA . . . . . T T A T . T . T C A T T T . . . A . A . . . T . . . . . T TA A . . . . . A C . . A G
blockSeqs : . . T G T T A CA AA . . G . . . A . . G G G AGGTCATTG A T G . . . T TC C . . . . . . G G T C A . . . G ATTA . . . . . C A . . . G . T C A T G A . . . A . A . . . C . . . . . T CA A . . . . . . . . . G .
blockSeqs : . . . . A A AA . . G . T G A GGCTCATTG A G G . . . A . . . . . . . . G A A G C . . . G GTTA . . . . . T . . . . . . . . A . G C . . . A . A . . . T . . . . . G T . . . . . . . . .
blockSeqs : . . AA . G . . A G G A . . . . . . . . . . . . G T T G C . . . . ATG . . . . . . . . C . . . A . A . . . C . . . . . A . . . . .
blockSeqs : . . . . T . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqCons : AA******* GT ******* ** A****** *** A***
originalCons : ACACTGACCCAAAA-TGAAAACTTTACACTTTATAT----GTTTGAATATTTCTTTTGTTAACATACATGTTCCGAAACGTGTTATACATGGCTATCAGGATTTAATTGCGGATAATCATTATGCA-ATTTTTTTTCGAAATTTACGAAGTATTCATGCGTCCGAGCACAAA---A--A--ACGTTTTCCTT-ACTTTGCACGTGCGCAACATCCGGTTTTTCACTTACAGGTTTNACACCGACAAGTAATCATTCGTTGCTTAGCACAGATAAAAAAA---CTTAAATTTGT---TT-NAAAAA-AACAC--------TTTTATTTAGCGATGCCACGTCTTTCCGAAACTGAGAGAAATCAGGCTATTGGTATGCTCCGGGCCG--GGTCAT--TG---GTAAATACCGTTGCACGTCATTTTGGCTGTTCCAGATAGACTATTCATATTCTTGCGAACCGGTA--CAATACTACTGGAT---------ATGTCA-GAGATCGTGTCAGACCCGGTCGCGTACGTGCAACAACGTTACGTACTCATCGCGCT-ATTACG-TTGAC-T-CACCTA-----CGTAATCGTTTCTTACCTGCAAC---CAGTACTCCTTGGCGTTACGGTGTTCATGCACAGACGATCATAAACCGTTTGAGACAAAANC-GTGTTCCAATTCGTGCTCGTCGGCCATACACTGGTCA---GATTCCGACAGCGCGCCA-------CAGAGCT-----NT--------T---A------------TGGGCACGACGTCAT-T--------TGC--AATACACGCGAAACCAGTGGCAATGCCTCTGT------ATCCCC------------GAGCCTGAACCCCATAGAACACGTACGGAATGAATTGGGT-CGGA-----GGGTCAGGTCCAATCATCAAATTGATACCGTAAACGACCTCCGAAATGCACTTCTGTTGGAATGGCAACGTATTCCAAACACGCT--CATTCAA--CGTTA----CGTAAGTTCATAGAGATGA--CGTATTCAGGAATGCATTCGTAAAAAC-GGAGTCCACACTGGTTACTGACGTTTT-AAAAAAAT-CAGTTATTGCACTCA--GTCAGCACTTTATG----TCTTTTTCAAATGTTACGTGATCA-TTTTCAT-TTTTCTGGAATTTTCATTTTGACCCTTCTTCACTTAA-TT-G-TTAGAAAAAA---A---CA---TGCGATGTCTGA--TTT--TTTCCAGTAAATTACACAGAAACATTAATA--TAGCCATAAAGCTTCGATGAAAAC---TTTT--A-ACCCTGAATATATATTTATC---AGCAAAAGAGACACTTT-TAAAGTCGATGTAAAGTTTTCATTTTGGGTCAGTGTA
finalCons : ACACTGACCCAAAA-TGAAAACTTTACACTTTATAT----GTTTGAATATTTCTTTTGTTAACATACATGTTCCGAAACGTGTTATACATGGCTATCAGGATTTAATTGCGGATAATCATTATGCA-ATTTTTTTTCGAAATTTACGAAGTATTCATGCGTCCGAGCACAAAAA-------ACGTTTTCCTT-ACTTTGCACGTGCGCAACATCCGGTTTTTCACTTACAGGTTTNACACCGACAAGTAATCATTCGTTGCTTAGCACAGATAAAAAAA---CTTAAATTTGT---TT-NAAAAA-AACAC--------TTTTATTTAGCGATGCCACGTCTTTCCGAAACTGAGAGAAATCAGGCTATTGGTATGCTCCGGGCCG--GGTCAT--TG---GTAAATACCGTTGCACGTCATTTTGGCTGTTCCAGATAGACTATTCATATTCTTGCGAACCGGTA--CAATACTACTGGAT---------ATGTCA-GAGATCGTGTCAGACCCGGTCGCGTACGTGCAACAACGTTACGTACTCATCGCGCT-ATTACG-TTGAC-T-CACCTA-----CGTAATCGTTTCTTACCTGCAAC---CAGTACTCCTTGGCGTTACGGTGTTCATGCACAGACGATCATAAACCGTTTGAGACAAAANC-GTGTTCCAATTCGTGCTCGTCGGCCATACACTGGTCA---GATTCCGACAGCGCGCCA-------CAGAGCT-----NT--------T---A------------TGGGCACGACGTCAT-T--------TGC--AATACACGCGAAACCAGTGGCAATGCCTCTGT------ATCCCC------------GAGCCTGAACCCCATAGAACACGTACGGAATGAATTGGGT-CGGA-----GGGTCAGGTCCAATCATCAAATTGATACCGTAAACGACCTCCGAAATGCACTTCTGTTGGAATGGCAACGTATTCCAAACACGCT--CATTCAA--CGTTA----CGTAAGTTCATAGAGATGA--CGTATTCAGGAATGCATTCGTAAAAAC-GGAGTCCACACTGGTTACTGACGTTTT-AAAAAAAT-CAGTTATTGCACTCA--GTCAGCACTTTATG----TCTTTTTCAAATGTTACGTGATCA-TTTTCAT-TTTTCTGGAATTTTCATTTTGACCCTTCTTCACTTAA-TT-G-TTAGAAAAAAA------CA---TGCGATGTCTGA--TTT--TTTCCAGTAAATTACACAGAAACATTAATA--TAGCCATAAAGCTTCGATGAAAAC---TTTTA---ACCCTGAATATATATTTATC---AGCAAAAGAGACACTTT-TAAAGTCGATGTAAAGTTTTCATTTTGGGTCAGTGTA
Alignments
lowQualScore : 1111 111111111 11 2 111 111 33333333 1111111111111111 111111111 11111 111 1111111 44444444444444444444444444444444 11111111 111111 222222222222 11111 111 1111111 11 222 1111 111
lowQualScore : 6 4444 1 6 0 1 77 0 1 77 222222222 5 4 4 00 1 3 0 111 55 111 77 5 33333333 1 1 3 4444444444444444 1 1 2 0 55 0 666666666 8 0 2 11 0 1 4 4 4 4 11111 222 2 1 1 1 1 5 888 0 6666666 0 5 77777777777777777777777777777777 5 88888888 66 222222 222222222222 1 1 1 1 5 5 44444 0 3 1 1 0 5 0 4 1 66 66 8888 0 2 55 1 4 0 8 4 5 66 9999 0 5 5 5 555 11 9999999 888 33 66 77 000 0000 1 000 5 2 3
lowQualScore : . .... . . . . .. . . .. ......... . . . .. . . . ... .. ... .. . ........ . . . ................ . . . . .. . ......... . . . .. . . . . . . ..... ... . . . . . . ... . ....... . . ................................ . ........ .. ...... ............ . . . . . . ..... . . . . . . . . . .. .. .... . . .. . . . . . . .. .... . . . . ... .. ....... ... .. .. .. ... .... . ... . . .
lowQualScore : 7 2222 7 6 1 4 66 5 1 55 555555555 0 3 0 88 0 8 4 777 00 777 77 7 33333333 1 9 7 8888888888888888 3 1 3 7 55 7 000000000 0 1 0 99 1 1 4 4 4 4 11111 222 9 9 9 1 0 0 888 8 2222222 2 6 00000000000000000000000000000000 0 11111111 99 888888 888888888888 4 7 4 6 7 3 33333 7 4 4 4 7 4 7 5 9 11 11 5555 7 3 55 0 0 6 9 4 4 11 4444 1 0 0 0 222 00 5555555 888 88 99 99 888 8888 0 000 7 3 0
consensus : ACACTGACCCAAAA-TGAAAACTTTACACTTTATAT----GTTTGAATATTTCTTTTGTTAACATACATGTTCCGAAACGTGTTATACATGGCTATCAGGATTTAATTGCGGATAATCATTATGCA-ATTTTTTTTCGAAATTTACGAAGTATTCATGCGTCCGAGCACAAA---A--A--ACGTTTTCCTT-ACTTTGCACGTGCGCAACATCCGGTTTTTCACTTACAGGTTTNACACCGACAAGTAATCATTCGTTGCTTAGCACAGATAAAAAAA---CTTAAATTTGT---TT-NAAAAA-AACAC--------TTTTATTTAGCGATGCCACGTCTTTCCGAAACTGAGAGAAATCAGGCTATTGGTATGCTCCGGGCCG--GGTCAT--TG---GTAAATACCGTTGCACGTCATTTTGGCTGTTCCAGATAGACTATTCATATTCTTGCGAACCGGTA--CAATACTACTGGAT---------ATGTCA-GAGATCGTGTCAGACCCGGTCGCGTACGTGCAACAACGTTACGTACTCATCGCGCT-ATTACG-TTGAC-T-CACCTA-----CGTAATCGTTTCTTACCTGCAAC---CAGTACTCCTTGGCGTTACGGTGTTCATGCACAGACGATCATAAACCGTTTGAGACAAAANC-GTGTTCCAATTCGTGCTCGTCGGCCATACACTGGTCA---GATTCCGACAGCGCGCCA-------CAGAGCT-----NT--------T---A------------TGGGCACGACGTCAT-T--------TGC--AATACACGCGAAACCAGTGGCAATGCCTCTGT------ATCCCC------------GAGCCTGAACCCCATAGAACACGTACGGAATGAATTGGGT-CGGA-----GGGTCAGGTCCAATCATCAAATTGATACCGTAAACGACCTCCGAAATGCACTTCTGTTGGAATGGCAACGTATTCCAAACACGCT--CATTCAA--CGTTA----CGTAAGTTCATAGAGATGA--CGTATTCAGGAATGCATTCGTAAAAAC-GGAGTCCACACTGGTTACTGACGTTTT-AAAAAAAT-CAGTTATTGCACTCA--GTCAGCACTTTATG----TCTTTTTCAAATGTTACGTGATCA-TTTTCAT-TTTTCTGGAATTTTCATTTTGACCCTTCTTCACTTAA-TT-G-TTAGAAAAAA---A---CA---TGCGATGTCTGA--TTT--TTTCCAGTAAATTACACAGAAACATTAATA--TAGCCATAAAGCTTCGATGAAAAC---TTTT--A-ACCCTGAATATATATTTATC---AGCAAAAGAGACACTTT-TAAAGTCGATGTAAAGTTTTCATTTTGGGTCAGTGTA
Reference ( family-217 ) : ACACTGACCCAAAA-TGAAAACTTTACACTTTATAT----GTTTGAATATTTCTTTTGTTAACATACATGTTCCGAAACGTGTTATACATGGCTATCAGGATTTAATTGCGGATAATCATTATGCA-ATTTTTTTTCGAAATTTACGAAGTATTCATGCGTCCGAGCACAAA---A--A--ACGTTTTCCTT-ACTTTGCACGTGCGCAACATCCGGTTTTTCACTTACAGGTTTNACACCGACAAGTAATCATTCGTTGCTTAGCACAGATAAAAAAA---CTTAAATTTGT---TT-NAAAAA-AACAC--------TTTTATTTAGCGATGCCACGTCTTTCCGAAACTGAGAGAAATCAGGCTATTGGTATGCTCCGGGCCG--GGTCAT--TG---GTAAATACCGTTGCACGTCATTTTGGCTGTTCCAGATAGACTATTCATATTCTTGCGAACCGGTA--CAATACTACTGGAT---------ATGTCA-GAGATCGTGTCAGACCCGGTCGCGTACGTGCAACAACGTTACGTACTCATCGCGCT-ATTACG-TTGAC-T-CACCTA-----CGTAATCGTTTCTTACCTGCAAC---CAGTACTCCTTGGCGTTACGGTGTTCATGCACAGACGATCATAAACCGTTTGAGACAAAANC-GTGTTCCAATTCGTGCTCGTCGGCCATACACTGGTCA---GATTCCGACAGCGCGCCA-------CAGAGCT-----NT--------T---A------------TGGGCACGACGTCAT-T--------TGC--AATACACGCGAAACCAGTGGCAATGCCTCTGT------ATCCCC------------GAGCCTGAACCCCATAGAACACGTACGGAATGAATTGGGT-CGGA-----GGGTCAGGTCCAATCATCAAATTGATACCGTAAACGACCTCCGAAATGCACTTCTGTTGGAATGGCAACGTATTCCAAACACGCT--CATTCAA--CGTTA----CGTAAGTTCATAGAGATGA--CGTATTCAGGAATGCATTCGTAAAAAC-GGAGTCCACACTGGTTACTGACGTTTT-AAAAAAAT-CAGTTATTGCACTCA--GTCAGCACTTTATG----TCTTTTTCAAATGTTACGTGATCA-TTTTCAT-TTTTCTGGAATTTTCATTTTGACCCTTCTTCACTTAA-TT-G-TTAGAAAAAA---A---CA---TGCGATGTCTGA--TTT--TTTCCAGTAAATTACACAGAAACATTAATA--TAGCCATAAAGCTTCGATGAAAAC---TTTT--A-ACCCTGAATATATATTTATC---AGCAAAAGAGACACTTT-TAAAGTCGATGTAAAGTTTTCATTTTGGGTCAGTGTA
gi|1 : ACACTGACCCAAAA-TAAAAACTTAACACGTTATAT----GTTTAAATATTTCTTCTGCTAACATACATGTTCGGAAACGTGTTATACATGGCTATCAGGATTCAATTGCGGATAATCATTA--CG-ATTTTTTTTCATAATTTCCGAATTATGCATGCATCCGAGCACAAA---AATA--ACGTTTTCCTT-ACTTTGGACGTGCGCAACATCC-GTTTTTTA---------TCGACACCGACAAGTAATCATTCGTTGCTTAGCGCAGAT-AAAAAA---CTTAAATTTGT---TT-AAAAAA-AACAC--------TTTTACTTAGTGATGCCACGTCTTTCTGAAACTGAGTGAAGTCGGGCTATTGGTA---TCCGGGACG--GGTCAT--TG---GTAAATACCGTTTCTC-TTATTTTGGCTGTTCCAGATAGACTATTCATATTCTTGCGAACCGGTA--CAACACTACTGGAT---------ATGTCA-GAGATAGTGTCAAACCCGGTTATGTATGTTCAAAATCGTTACGTACTCATCGCGAT-GTTACG-TTGATATACACCCA-----CGTAATTGTTTCTTACTTGCAAC---GAGTACTCCTGTATTTTACGATGTTCACGTACAGACGAGCATAAACTGTTTGAAACAAAAAC-CTGTTCCATTTCGTGCTCGTCGCACATACACTGGCCA---GTCTCCGACAGCGCGTCAGAGATTCCAGA-CT-----AT--------T---A------------TGAGCACGACGTC------------------ATACACGCGAAATCGGTGACAATGCCTCTGT------ATCCCC------------AAGCCTGAACCTCATAGAACACCTATGGAATGAATTGGGT-CAGA-----GGGTAATGTCTAATCATCAAATTGTTACCGTAAATGACCT-TGAAATGCACTTCTGTTGTAATGGCAATGTATTCCAAACACGCT--CGTTTAA--CGTTA----CGTAGGTTCATAGAGAGTA--CGTGTTCCGGAATGCATTTGTTAAAAC-GGAGTCGACACTGGTAACTGACGTTTTAAAAAAAAT-CAGTTATTGCAGTTACTGTCAGTACTTTTTG----TCTTTTTCAAATGTTAAATGATCA-TTTTCAT-TTTTCATCAATTTTCATTTTGACCCTTCTTCACTTAA-TT-G-TTAAAAAAAACCCA---CAACTTGCGATGTCTGA--TAT--TTCCCAGTAAATTACACAGACACATAATTA--TAGCCATAAAGCTTCGATGAAAAC---TTTTTAA-ATCCTGAATATACATTAATC---AGCAAACGAGATACTTT-TAAAGTCGATCTAAAGTTTTCATTTTGGGTCAGTGTA
gi|10 : cAGTGGTAATGCCTCTGT------ATCCCC------------GAGCCTGAACCCCATAGAACACGAATGGAATG---TGGGTGCGGATTGAGGGGTGGGG-------GTCAAATTGATATCATACACGATCTCCGAAATGCACTACTGAAGGAATTGCAACCTATTCCAAATACGGT--CATTTAG--CGTTA----CGTAAGTTCACAGAGATGA--CGTTTTCAGGAATGTATTTGTTAAAAC-GGAGTCCACGCTGATTAATGACGTTTT-AAAAATATTCAGTGATTGCACATA--GTC------------------TTTTCAAATGCTACATGATCAGTTTTAATATGTTCTGAAATTTTt
gi|11 : caGTTA----TATTGGCCTATAGAGATTA--CGTATTCAGGAATGCATTCGTAAATAC-G-AGGCTACATTGGTTAATGACGTTTT-TAAAAAAT-CAGTTATTGCACTAA--GTCAGCACTTTGTC----CCTTCTTCAA
gi|11 : tCACTTTGTCCCTTCTTCAATCAT-TT-T-TTAGAAAAAA---AAAACA---TGCGATGTCTGGGTTTT--TTTCCAGTAAATCACGCAGAAACATTAATA--TAGCCATAAAGCCTCGATGAAAAC---T----------CTGAACATATATTTAAC---AGAAACAACGATACTTT-TAAAATCGACGTAAAATTTTCAT------TCAGTGTAtcattttttagaaaaaaaaaacatgcgatgtctgggtttttttccagtaaatcacgcagaaacattaatatagccataaagcctcgatgaaaactctgaacatatatttaacagaaacaacgatacttttaaaatcgacgtaaaattttcattcagtgtata
gi|12 : tgttatattggcctatagagattacgtattcaggaatgcattcgtaaatacgaggctacattggttaatgacgtttttaaaaaatcagttattgcactaagtcagATAAACCATCTGAGACAAAAACCGTGTTCTAATTC-------CCGGCCATACACTGGTCA---GATTCCGACAGCACGCCA-------CAGGGCT-----TTCAGACTGTT---A------------TGGGCATGACGTCAT-T--------TGC--TGTACACGCAAAACCAGTGGAAATGCATCTGT------ATCTTC------------GAACCTGAACCACATAGAACACGTATGGAATGAAATAGGT-CGGA-----GGGTCAGGTCCAATAATCAAACTAATACta
gi|13 : ATGTCACGACTATCCGAAAATGACAGAAATCAGGCTGTCGGTATGCTTAGAACCG--G--CA---TGTCTGTAAATGACGTTGCTCTTCATTTTGGGTGCTCTAGGCAAACAATTCACAACCTGACAACTCGGTATGCA--ACTACTGG-------------GTCA-Ggtcatt
gi|14 : tttaagcagccacacgcactttttatcattgacacgaaaatacaatattgtttacagttttgactgaaaacgtaaTGAACAAAAA-TGAAAACTTTACGCTTTAAAC----GTTGGAATATTTCTTTTGTTAACATACATATTTCAAAACGTGTTATACATGGCTATCAGAATTTAATTGCGGATAATCATTATGTA-ATTATTTTTCGAAATTTACGAAGCATTAATGCGCCCGAGCACAAA---A--A--ATGTTTTCCTC-ACTTTGCACGTGCG---CATCCAGTTTTTCACTTACAGt
gi|15 : ataaTGTGTCAGATGGACTATTCATATCCTTGC----TGATA--CAATACTACCGAAT---------ATGTCA-GCGGTCGTGTCAGACCCGGCCGAGTACGTGCTACCACGTTACGTAATCATCGCGCTAAATACGTTTTTT-T-CACCTA-----CGTAATC-TTTCTTACCTGCAACCCACGGTACTCCTTGGCGTTATGGTGTTCATGAACAGACGATAATAAACCGTTT
gi|16 : tagaGTATTCAGAAATGCAT---------C-AGAGTCCACACTGGGCACCGACGCTTT-AAAAAA---CAGTGTTTGCACTCA--GACAGCACTTTATACTTTTTTTTTTAAAATGTTACGTGATCA-TTTTCAT-TTTTCTGGAATTTTTATATTGACCCTTCTTCACTTAATTT-T-TTAGAAAAAA---A---CA---TGCGACGTCTGA--TTT--TTTCCAGTAAATTACACAAAAA
gi|17 : CACTGACCCAAAAATGAAAACTTTACACTTTAAAT----GTTTGAATATTTCTTTTGCTAACAAACATGTCCTGAAACGTGTTATACATGGTTATCGGGATTTATTTGCGGATAATCATTATGCATTTTTTTTTTCGAAATTTA-AAAGTATTCATGCATCCGAGCAC-AA---A--A--ACGTTTTCCTT-ACTTT
gi|18 : AGGACAAATCATCAGATAAACAATGTCAACGATCTGAGACAAGCACTTCTTATTAAATGGCAGGCTCTCCCTAACGTCCT--CA--CAAGACGTTA----CGTAACTCCAT-GAG--GAACCGCATTATTGAATGCATCCGAAAGAAT-GACGGCCACACagatg
gi|19 : TTTAATTGCGGATAATCATTATGCA-ATTATTTTTTGAAATTTACGAAGTATTAATGCGCCCGAGCACAAA---A--A--ATGTTTTCCAC-ACTTTGCACGTGCG---CATCCAGTTTTTCACTTA
gi|2 : ACACTGACCCAAAA-TGATAACTTTACACTTTATATACATGTTTGAATATTTCTTTTGTTAACATACATATTCCAAAATGTGTTTTACATGGCTATCCGAATTTAATTGCGATTAATCATCATGCA-ATTTTTTTTAAAAATTTACAAAGTATTCATGCGTCCAAGCACAAA---A--A--ACGTATTCCTT-CCTTTGCATGTGCGCAACAACAGGTTTTTCACTTACAGGTTTAACACCAACAAGTACTCATTCGTTGCTTAACACATATAAAAAAA---CTTAAATTTGT---TT-TAAAA--AACAC--------TTTTATTTAGCGATGCCACGTCTTTCTTAAACTGAGAGAAATAAGACCCTTTGTATGCTCCAGTCTG--GGTCAT--TG---GTAAATACCGTTGCACGTCATTTTGGCTGTTCCAGATAGACTATTTATATTCTAGCAAACCGGTA--CAATACTACTGGAT---------ATGTCA-GAGATCATGTCAGACTTGGTCACTTAGGTGCAACAATATTACATACTCATTGTGCT-GTTATT-TTGAC-T-CACCGA-----TGTAATCATTTCTTACCTGCAACA--CA-TACTACTTGGCATGTCGATATTCATGCACAGACGATCATAAACTGTTTGAAATAAAAAC-ATATTCCAATTCGTGTTCGTCGGCCCTACACTGGTCA---GATTCCGACAGCGCGCCA-------CTGAGTT-----TT--------T---A------------TGGGCACAACGTCAT-T--------TGC--AATACATGCAAAACCAGTGGCAATGCCTTTAT------A-ACCC------------GAGCCTGAACCCCATAGAACACATACAGAATGAATTGGAT-CAAA-----TGGTCAGGTTCAAACATCAAAATAATACCATACACTATCTCCGAAATGCACTTCTGTTGGAATGGCAACATATTTCAAACACGCT--CATTTAA--CGTTA----CGTAAGTTCACAGAG----------------------------AAAACGGGAGTCCACACTGGTTACTGATGTTTT-AAAAAAAT-CAGTTATTGCACTTA--GCCAGCACTTTATG----TCTTTTTCAAATGTTACATGATCA-TTTTCAT-TGTTCTGGAATTTTCATTTTGACCCTTCTTCACTTAA-TT-GATCAGGAAAAA---A---CA---TGCGATGTCTAA--TTT--TTTCCAATAAATTATACAGACACATTAATA--TAGCCATAAAGCTTCAATGAAAAC---TTTT--ATAGCCTGAATATATATTTATC---AGCAAAAGAGACACTTT-T-AAGTCAATGTAAAGTTTTCATTTTAGGTCAGTGTAacaattgtcactgtaagtga
gi|20 : CACTGACCAAAAA-TGAAAACATTACACTTTATAT----GTATGAATA-----TTTATTAACA----------GAGATGTGTTACACATGGCTATCAGGATTTAATTG
gi|21 : TTTTTCCCCAAAATTTCTGAAGCATTCTTGCGTCAAAGCACA-A---A--A--ACATTTTCCTT-ACa
gi|22 : ttatggtgtGGCAGCTTATTCCAAACATGCT--CATACAA--CTTTA----CGTAAATTCAATGAGGTGA--CCTATTCcgt
gi|23 : c--TGGCAATAAAACTTCGATAAAAAC---TTTT--A-ACTCTGAATATGCATTTATC---AGTAAA
gi|24 : GCAAAAAAGATACTTTGTA--GTCGATATAA-GTTTTCATTTTGGGTCAAT
gi|3 : CTTTGCACATGCGCAACATCCACTTTTTCACTTCCAGGTTTTACACTGACTTGTAATCATTTGTTGCTTTGCACATACAAAAAAAAAAC---AATTTGT---TT-TAAAAA-AAAACAG------TTTTATTTGGCAATGCCACGTCTTTCTGAAACTGAGAGAAATCAGGCTATTGGTATGCTCCAGGCTATTGGT-AT--GG---GTAAATGCTGTTGGACGTCATTTTCGCTGTTCCAGATAGA--GTTCATATTCTTTCGAACAGGTA--CAATACTACTAGAT---------ATGTCAAGAGATCATGTCAGACCAGGTTGCGTACATGC------------------------T-ATTATG-CTGAC-T-CACCTAGGCTACGTAATCGTTTCTTACCTGCAAC---CAGGGCTCTTT----------TGTTCGTGCACA----ATTATAATCCGTTTTAGACAAAACT-GTGCTCCAATTTGTGCTCACTGGCCATACCCTGATCA---GATTCCAACAGCGCATCA-------CATA-CT-----AT--------T---A------------TGACCATGACGCAAT-T--------TGC--AATACATGCGAAACCAGTGGCAATGCCTCTGT------ATCCCCCCAACCCCCACTGAGCCTGAACCTCATAGAACATGTATGGAATGAATTGGGT-CTGT-----GAATCAGGTCCAATCATCAAGTTAATATCATAAACAACCTCTGAAATGAACTTCTG---------------------AACAAACT--CATTCAA--TGTTA----CGCAAGCTCAAAGAGATGG--CATATTCAGGAATGCATTTGTAAAAAC-GGAGGCCACACTGGTTACTGACATTTA-AAAAAAAA-CAGTTATTGCACT----GTCAGTGCTTTATG----TCTTTTTCAAGTGTAACATGATCA-ATTTCAT-TTTTCTGGAATTTTCATTCTGACGCTCCTTCACTTAA-TT-GTTTAGAAGAAA---AT--CA---TGCAATATCTGATTTTT--TTTCCAGTAAATTACACAGAAACATTACTA--CAGCCATTTATCTTCAACAAAAct
gi|3 : ATTTATCTTCAACAAAAGAGACGCTTT-TGAAGTCAATGTAAAGTTTTCAATTT--GTCAGTGgagacgcttttgaagtcaatgtaaagttttcaatttgtcagtgcgttataaa
gi|4 : ctttgcacatgcgcaacatccactttttcacttccaggttttacactgacttgtaatcatttgttgctttgcacatacaaaaaaaaaacaatttgttttaaaaaaaaacagttttatttggcaatgccacgtctttctgaaactgagagaaatcaggctattggtatgctccaggctattggtatgggtaaatgctgttggacgtcattttcgctgttccagatagagttcatattctttcgaacaggtacaatactactagatatgtcaagagatcatgtcagaccaggttgcgtacatgctattatgctgactcacctaggctacgtaatcgtttcttacctgcaaccagggctcttttgttcgtgcacaattataatccgttttagacaaaactgtgctccaatttgtgctcactggccataccctgatcagattccaacagcgcatcacatactattatgaccatgacgcaatttgcaatacatgcgaaaccagtggcaatgcctctgtatccccccaacccccactgagcctgaacctcatagaacatgtatggaatgaattgggtctgtgaatcaggtccaatcatcaagttaatatcataaacaacctctgaaatgaacttctgaacaaactcattcaatgttacgcaagctcaaagagatggcatattcaggaatgcatttgtaaaaacggaggccacactggttactgacatttaaaaaaaaacagttattgcactgtcagtgctttatgtctttttcaagtgtaacatgatcaatttcatttttctggaattttcattctgacgctccttcacttaattgtttagaagaaaatcatgcaatatctgattttttttccagtaaattacacagaaacattactacagccAAA---CT-AAATTTGTAGATT-TATAAATGACATCTGTTTAATTTTATTTAGCGATGCCACGTCTTTCTGAAACTGAGAGAAATCAGGCTATCTGTATGCTCCGGACCA--GGTCAT--TG---GTAAATACCGTTGGATGTCATTTTGTCTGTTCCAGACAGACACTTCATATTCTTACTAACCGGTA--CAATACTTCTGGATATGTCGGATATGTCA-GAGATCGTGTCAGACCCCGTCGTGTACGTGCATTAACGTTACGTACTCATCGCGCT-ATTACG-TTGAC-T-CACCTT-----CGTAATAGTTGTCTACCTGCAAC---CAGTACGCTTTAGTGTTATGGTGTTCATGCACATAGGATCTTAAACCGTTTGAGACAAAACC-CTGTTCCACTTCGTGCTCGTCGGCCATACATTTGTCA---GTTTCCGTCAGCGCGCCA-------CAGAGCT-----A---------T---G------------TGGGCACGACTTCAT-T--------TGC--AATACACACGAAACAAGTGGCAATACCTCTGT------ATCCCC------------GGGCCTGAACACCACATATCAAGTACGGAA---------T-C--------------------ATCA---AATTGATACTATAAACGACACCCGAAATGCACTTCTGTTGGAATGGCAACGTATTCCAAACACGCT--TATTCAA--CGTTA----CGTAAGTTCATAGAGATGA--CGTATTCAGGAATGCATTCCTAAAAAC-GGAGGCCACACTGGCGACTGACGTTTA-AAAATAAT-CGGTTATTTCACTCA--GTCAGCACTTTATG----TATTTCTCAAATGTTACGTGATCA-TTTTAAT-TTTTCTAATATTTTCATTTTGACTTTGCTC--CT----TT-G-T----------------CA---T-------------TTT--TTTCAAGTAAATTACACAGAAACA-TAATGTTTGGCAATCAGGCTTCGATGAAAACTTGTTTT--A-ACTCTGAATATATATTTATC---AGCAAAAGAGATAGTTT-TAAAGTCGATGTAAAGTTTTTATTTCGGGTCAGTGTAcgttataaa
gi|5 : -AAAAC--------TTTTATTTAAGGAGGCCACGTCTTTCCGAAAATGAGAGAAATCAGGT-----------------CTG--GGTCATACCG---ATAAATACCGTTGTACGTCATTCTTGCTGTTTCAGATAGACTATCTATATTCTTGCGAACCGGTA--CACTACTACTGGAT---------ATGTTAAGCGATCGTGTCAGACCCGGTCGCGTACGTGCAACAACGTCACGTTCTCATCGCGCT-ATTGCG-TTGAC-T-CACCTA-----CGTAATAGTTT-TTACCTGCAAC---ACGTACTCCTTTGCGTGTCGGTATTCATGCACAGACGATCATAAACCGTTTGAGATAAAAAC-GTGTTCCAATTCGTGCTCGTTGGCTCTACACTGGTCA---GATTCAGACAGCGCGCAA-------CCGATCT-----GT--------T---A------------TGGGCACGACGTTAT-T--------TGA--AATATACACGAAACCAGTGGCAATGTCTCTATAGCACGATCTCC------------GAttaa
gi|5 : ACGATCTCCGAAATGCACTTCTGTTCGAAAGGCAACGTATTTTAAACACGCT--AATTTAG--CGTTC----CGTAAGGTCACAGAGATGA--TGAATTCAGGAATGCATTCGTAAAAAC-GGAATTTACACTGGTTACTGACGTTTT-AAGAAAAT-CAGTTATTGCACTTA--GCCAGCACTTTATG----TATTTTTCAAATGTTACATGGTCA-TTTTCAT-TGCTCCGGAATTTTCATTTTGACCCTTCTTCACCTTA-TTAA-TCAGAAAAAA---A---CA---TGCGATGTCAGA--TGT--TTTCCAGTAAATAACACAG-CACATTAATA--TAGGCATAGAGCTTCAATGAGAGCTG-TTTT--A-GCCTTTAATATATATTTATC---AGCAAAAGAAACATTTT-TGAAGTCGGTGTAAAAGTTTCATTTTGGGTCAGTGTAaatgcacttctgttcgaaaggcaacgtattttaaacacgctaatttagcgttccgtaaggtcacagagatgatgaattcaggaatgcattcgtaaaaacggaatttacactggttactgacgttttaagaaaatcagttattgcacttagccagcactttatgtatttttcaaatgttacatggtcattttcattgctccggaattttcattttgacccttcttcaccttattaatcagaaaaaaacatgcgatgtcagatgttttccagtaaataacacagcacattaatataggcatagagcttcaatgagagctgttttagcctttaatatatatttatcagcaaaagaaacatttttgaagtcggtgtaaaagtttcattttgggtcagtgtagttt
gi|6 : aaaacttttatttaaggaggccacgtctttccgaaaatgagagaaatcaggtctgggtcataccgataaataccgttgtacgtcattcttgctgtttcagatagactatctatattcttgcgaaccggtacactactactggatatgttaagcgatcgtgtcagacccggtcgcgtacgtgcaacaacgtcacgttctcatcgcgctattgcgttgactcacctacgtaatagtttttacctgcaacacgtactcctttgcgtgtcggtattcatgcacagacgatcataaaccgtttgagataaaaacgtgttccaattcgtgctcgttggctctacactggtcagattcagacagcgcgcaaccgatctgttatgggcacgacgttatttgaaatatacacgaaaccagtggcaatgtctctatagcACACTGACCCAAAA-TAAAAACTTTACACTTAATAT----GTTTGAATATTTCCTTTGTTAACATACATGTTCAAAAGCGTGTTATAC-----------------ATTGCGGATAATCATTATGCA-TTTTTTCCTCAAAATTTCAGATGTATGTTTGCGTCCGAGCACAAA---C--ACTCCGTTTTCCTT-ACTTTGCACGTGTGCAACATCTGGTTTTTCACTAATAGGATTTACACCG-CGAGTAATCTTTTATTGCTTAGCACAGAT-AGAAAA---CTTTAATTTGT---TTAAAAAAA-AACAC--------TTTCATTAAGCGATCCCACATCTTTCCGAAACTGAGAGAAATCCGACTATTGGTATGCTCCGGGCC------------A---GTAAATACCGTTGCATGTCATTTTGGCTGTTCCAGATAGACTATTCATACTCTTGCGA----------------GCTTGAT---------ATGTCA-GAGATCGTGTCAGGCCCGGTCACATACGTGCAACAACGTTACG--------------AATACA-TTGAT-A-CACCTA-----AGTAATCGTTTCTTACCTGCAAC---TAGTACTCCTTGTCGTTACGGTATTCATGCTTACACGATCATAAACCGGTTGAAACAAAACC-GTGTTCCAATTCGTGCTCTTCGGCCATACACTGGTCAGATGATTCCGACAGCGCGCGA-------CATAGCTTCCAGAT--------TGGAA------------TGGGCACGATGCCATGTGAAATACATGCGAAATACACTCGAAATTAGTGGCAATGCCTCTGT------ATCCCC------------GAGCgttt
gi|7 : ATCTACAAC---CAGTTTTTCTTGGCAGAACGGTGTTCATGCATAGACAATCATAAACCGTTTGAGCCAAA-CC-GTGTTCCAATTCGTGCTCGTTGGCAATACACTTGCCA---GTATCAGACAGCCCGCCA-------CCGAGCT-----TT--------T---AAAGATTGGTTAATGGGCAAGACGTCGT-T--------TGC--AATACACGCAAATCCAGGGGCAATGCCTCTGT------AGCCCC------------GAGCTTGAACCCCATAGAAAACGTTTGGATAGAATTAGGT-CGGA-----GGGTCAGGTCCAATCATCAAACAGATACCAT
gi|7 : CAAACA-GATACCATTCAA--CGTTATTGACGTAAGTTCATAGAGATGA--CGTAAATAGGAATGCATTCGTAAAAAC-GGTGTCCACACTGGTTACTGACGTTTTTAAAACAAT-CAGTTATTACACTCA--GTCAACACTTTATG----TCTTTTTCAAATATTACGTGGTCA-TTTTTAT-TTTTCTGGAAATTTCATTTTGACCATTCTTCACTTAA-AT-A-TT-----------------------GATGTCTGA--TTTTCTTCCCAGTAAATTACACAGAAAtcaacgttattgacgtaagttcatagagatgacgtaaataggaatgcattcgtaaaaacggtgtccacactggttactgacgtttttaaaacaatcagttattacactcagtcaacactttatgtctttttcaaatattacgtggtcatttttatttttctggaaatttcattttgaccattcttcacttaaatattgatgtctgattttcttcccagtaaattacacagaaa
gi|8 : atctacaaccagtttttcttggcagaacggtgttcatgcatagacaatcataaaccgtttgagccaaaccgtgttccaattcgtgctcgttggcaatacacttgccagtatcagacagcccgccaccgagcttttaaagattggttaatgggcaagacgtcgtttgcaatacacgcaaatccaggggcaatgcctctgtagccccgagcttgaaccccatagaaaacgtttggatagaattaggtcggagggtcaggtccaatcatAATATGCCTTTTTTTAAATTTCATGTCCGGAAACGTGTTATACATGGCTGTCAGGATTTAATTGCGGATAATCAT--------------------------GAAGTATTCATGCGTCCGAACACAAATAAA--AC-ACGTTTTCTTTTACTTTGCACGTGCGCAACATCCGGGTTTTCACCTACAG----AAAACCGGCAAGTAATCATTTGTTGCTTGGCATGGGT------A---TTTGTTTTTAT---TT-AAAGAA-ATCA
gi|8 : AAAGAAATCAGGCTATTTGTATGCTCCGGACCG--GCTCAT--TG---GTATTTACCGTTGCGCGTCATTTT---TGTTCCAGATAGACTATTTAAATTCTTGCAAAACAGTG--CAATAC-----GTT---------ATAT---GAGATCGTGTCAGACC----CGCGTTCGTGCAACAACG-TACGTACTTA------A-ATTACG-TTGAC-T--A--TT-----CGTAATCGTTTCTTATCTACAAggctatttgtatgctccggaccggctcattggtatttaccgttgcgcgtcatttttgttccagatagactatttaaattcttgcaaaacagtgcaatacgttatatgagatcgtgtcagacccgcgttcgtgcaacaacgtacgtacttaaattacgttgactattcgtaatcgtttcttatctacaa
gi|9 : aatatgcctttttttaaatttcatgtccggaaacgtgttatacatggctgtcaggatttaattgcggataatcatgaagtattcatgcgtccgaacacaaataaaacacgttttcttttactttgcacgtgcgcaacatccgggttttcacctacagaaaaccggcaagtaatcatttgttgcttggcatgggtatttgtttttatttACTGAGAGAAATTAGGCTATTGGGATGCTCT-------------------------ATACCGTTGCTCGTCATTTTGACTGTTCCAGATAGACTATTCATATTCTTGCGAACCAGTA--CAATACTACAGGAT---------ATGTTA-GAGAAAGTGTGAGACTCGGTTATGTATGTGCAACGATGTTACGAACTCATCGCGCT-ATTCCG-TTGAT-T-CACTTA-----CGTAATCATATCTTACCTGCAAC---CAGTACTCCTTGGCTTTACGGCATTCATGCATTGACGATCATAAACCTATTGTGACA