lowQualScore : 11 1 1 222 1 1 1 333
lowQualScore : 6 1 666 88 2 4 6 4 3 4 1 3 88888 6 5 111 3 2 8 3 555 8 1 555 7777777 777 777 777
lowQualScore : . . ... .. . . . . . . . . ..... . . ... . . . . ... . . ... ....... ... ... ...
lowQualScore : 5 2 444 44 7 8 2 7 3 7 9 3 33333 7 8 333 1 5 7 3 888 7 8 000 2222222 000 000 000
consensus : AAGGGCTTACATTAAAGCCCGAGTTTCTTTGCAGTTATCGCCAAAAGAGAT---TTATTCTGAATTGTGTCGTATACATGATAGTTCTACCGTAACATTAAGAACAG-TTTTTCGTTGGGTTAAGAAATTTAAGG-G-----GGGTCAGCATAGCCTGCAAGAAGATAACCGCCCAG-GTAGGCCTGTTGTTGCAGCAACAA-AGGA---AAACATTGGTGCTGTTAGAGCTATGGTAGAA---G---AAG---A---TG---GACGGTA
Reference ( gi|5 ) : AAGGACTTACATTAAAGCCCGAGTTTCTTTGCAGTTATCGCCAAAAGAGAT---TTATTCTACATTGAGTCATATACATGGTAGTTCTACCGTGACATTAAGAACAG-TTTTTCGCTGGGTTAAGAAATTTAAAG-G-----GGGTCAGCTTAGTCTGCAAGAAGATAACTGACCAG-GTAAGCCTGTTGTTGCAGCAACTA-AGGA---ATACATTGGTGCTGTAAGAGCTATGGT---A---G---AAG---A---TG---GACGGTA
gi|4 : AAGGTCTTACATTAAAGCCAGAGTTTCTTTGAAGTAATCGCCAAAAAAGAT---TTATTCTACATTGAGTCGTATACTTGGTACTTCTACCGTGACATTAAGAACAG-TTTTTTGCTGTGTTAAGAAAAGTAAA--G-----GGGTAAGCATAGCCTGCAAGAAGATAACAGCCCAG-GTAGGCCTGATGTTGCAGCAACTA-AGGA---ATACATTGGTGCTGTAAGAGCTATGGTAGAA---G---AAG---A---TG---GATGGTA
gi|1 : gaaatAAGGGCTTACATTAAAGCCCGAGACTCTTTGCAGTTGTCGCCAAGAGAGATGATTTATTCTGAATTTAATCGTATACATGATAATTTTATCGTAACATTAAGAACAG-TTTTTCGTTGGGATAAGAAGTTTAAGG-T-----GGGTCAACATGGCCTGCAAGAAGATAACCGCCCAG-GTAGGCCTGTTGTTGCAGCAGCAA-AGGA---AAACATTGGTGCTGTAAGAGCGATAGT---AGATG---AAG---A---TA---GACGGCA
gi|2 : ataaAAGGGTTTACATTAAAGCCGGAGTGTTTTGGCAGTTATCGCCAAAAGAGAT---TTATTCTTAATTGTGTTGTATACATGATAGTTCTACTGTAACA-TAAGAACAG-TTTTTCGTTAGAATAAGAAATTCAAGGTG-----GGGTCAGCATAGTCTGCAAGAAGATAACCACCTAA-TTAGACCTGTTGTTGCAGCAACAA-AGGA---AAACATGGGTGCTGTTAGAACTATGGT---A---G---AAGAACA---TG---GCCGGT
gi|7 : gaaatAAGGGCTTACATTAAAGCCCGA--------------ATCGCCAAAAGAGAT---TTATTCTGAATTGTGTCGTATACATGATAGTTCTACCGTAATATTAAGAGAAG-GTGTCCGTTGGGTTAAGAAATTTATGG-GGTGGTGGGTCAGCATAGTCTGCAAGAAGAAAACCGCCCAG-GAAGGCCTGTTGTTGCAGCAACAA-AGGA---AAACATTGGTGTTGTTAGAGTTATTGT---A---AAATAAG---A---TG---
gi|13 : gaaatAGGGACTTTCATTAAAGCCCCAGTTTCTTTGCAGTTATCGCCAAGAGAGAT---TTATTCTGAATTCTGTCGTATACATG--AGTTTTTCCGCAACATTTTTAACAG-TTTTTTGTTGGGTTAAGA
gi|15 : aaaaatAAGGCCTTACATTAAATACTGAATTTCTTTGAAGTTATCGCCAAAAAAGAT---TTATTCTGAATTGTGTCGTTTACAAGATAGTTCTca
gi|6 : atAGGGCTTACATTAAAGCCAGAGTTTCTTTGCAGTTATCGCCAAAAGAGAT---TTATTCTGAATTGTATCGTATACATAATAGTTCTTCTGTAACATTAAGAACAG-TTTTTCATTGAGTTAAGAAATTTAAGG-G-----GGTTCAGCGTAGCCTGCAAGAAGAAAACCACCCAG-GTAGGC--ATTGTTGCAGCAAC-A-A--A---A-ACATTGGTGCTGTTAGAGCTATGGTAGAA---G---AAG---A---TG---GACAGTg
gi|8 : AGAGCTAACATTAAAGCTTGAGTTTCTTTGCAGTTATCGCCAAAATAGAA---TTATTCTGAATTGTGTCGTATACATGATAGTTATACAGTAATATTACGAACAG-TTTTTTGTTGGGTTAAGAAATTT-AAG-G-----AGGTCAGCATAGCCTGT--------------CCAG-GTAAGCCTGCTGTTGCAGCAACAA-AGAA---AAAAATTGGTGCTGTTAGAGCTATGGT---A---G---AAG---AAGTTT---GACGGT
gi|3 : gaaattGGGTTTACATTAAAGCCCGAGTTTCTTTGCAGTTATCACCAAAAGATAT---TTATTCTGAATTGTGTCGTTTACATGGTAGTTTTACCGTAACATTAAGAACGG-TTTTTCGTTTGGTTAGGAAATTT-AAG-G-----GGGTCAGCATAGCCGACAAGATGATAACCGCGCAG-GTAGGCATGTTGTTGCAGCAACAA-AGGC---AAACATTGGTGCTGTTAGATCTATGATAGAA---G---AAG---A---TG---GACGGTA
gi|9 : gaaatacGGGCTGACATTAAAGCCTGAGTTTCTTTGCAGTTATCACCAAAAGATAT---TCATTCTGAATTGTGTCATATACATGATAGTTCTACGGTAACATTAAGAACAG-TTTTTCGTTGGGTTAAGAAATTTAAGG-G-----GAG-CAGTATAGTCTGCAACGAGACAATCGTCCTG-GTAGACCTGTTGTTGCAACAACAA-AGGA---AAACATTGACGTT
gi|10 : aaactcGGGCTTACGTTAAAGACCGAGTTTCTCTGCAGTTATCACCAAAAGTGGT---TCATTCTGAATTGTGTCGTATACATGATAATCCTACTAAAACGTTACTAACAGTTTTTTTGTTGGGTTAAGAAATTTAAGG-G-----GGGTCAACATAGCCTGCAAGAAAATAACCGCCAAG-GTAGGCCTGTTGT
gi|11 : gaaatacATTGTGTCGTATATATGATAGTTCTACTATATTATCAAGAACAG-TTTTTCGTTGGGTTAAGACAATTAAGG-A-----GGGTGGGCGTGAGGGGGGGGGAGGT------TCAGCAT-AGCCTGTTGTTGCAGCAAC-A-AGGAGGGAAACATTGGTGAGGTTAGACCTATGGT---A---A---AAG---A---AGAATGACGG
gi|12 : GTTCTCACGTAACATTGAGAACTG-TTTTTCGTTGGGTTTAGAAATTTAAGG-G-----GGAACAGCATAG--------AAGATAACAGCTTAG-GTAAGCCTGTTGTTGAAGCAACAA-AGGA---AAACATCGGTGTTGTTAGAGCTATTATAGAA---G---AAG---A---TG---AACGGT
gi|14 : G-G-----GGATCAGTACAGCCTGCAAGAAGATAACCGCCCAG-GCAGGCCTGTTGTTGCAGCAACAA-AGCA---AAACCTTGGTGCTGTTAGAGCTATGATAGAA---G---AAG---A---TT---GACGGT
gi|16 : AG-ACAGGCCTGTTGCTGCAGTAACAATAGCA---A-ACATTGATGTT
Alignments
lowQualScore : 0 555 3 3 3 77777 3 2 1 2 44
lowQualScore : . ... . . . ..... . . . . ..
lowQualScore : 2 888 1 8 1 77777 1 6 8 9 22
consensus : AAGGGCTTACATTAAAGCCCGAGTTTCTTTGCAGTTATCGCCAAAAGAGAT---TTATTCTGAATTGTGTCGTATACATGATAGTTCTACCGTAACATTAAGAACAG-TTTTTCGTTGGGTTAAGAAATTTAAGG-GG-----GGTCAGCAT-AGCCTGCAAGAAGATAACCGCCCAG-GTAGGCCTGTTGTTGCAGCAACAA--AGGAAAACATTGGTGCTGTTAGAGCTATGGTAGAAGAAGATGGACGGTA
Reference ( family-2041 ) : AAGGGCTTACATTAAAGCCCGAGTTTCTTTGCAGTTATCGCCAAAAGAGAT---TTATTCTGAATTGTGTCGTATACATGATAGTTCTACCGTAACATTAAGAACAG-TTTTTCGTTGGGTTAAGAAATTTAAGG-GG-----GGTCAGCAT-AGCCTGCAAGAAGATAACCGCCCAG-GTAGGCCTGTTGTTGCAGCAACAA--AGGAAAACATTGGTGCTGTTAGAGCTATGGTAGAAGAAGATGGACGGTA
gi|1 : AAGGGCTTACATTAAAGCCCGAGACTCTTTGCAGTTGTCGCCAAGAGAGATGATTTATTCTGAATTTAATCGTATACATGATAATTTTATCGTAACATTAAGAACAG-TTTTTCGTTGGGATAAGAAGTTTAAGG-TG-----GGTCAACAT-GGCCTGCAAGAAGATAACCGCCCAG-GTAGGCCTGTTGTTGCAGCAGCAA--AGGAAAACATTGGTGCTGTAAGAGCGATAGTAGATGAAGATAGACGGCA
gi|10 : ataaGGGCTTACGTTAAAGACCGAGTTTCTCTGCAGTTATCACCAAAAGTGGT---TCATTCTGAATTGTGTCGTATACATGATAATCCTACTAAAACGTTACTAACAGTTTTTTTGTTGGGTTAAGAAATTTAAGG-GG-----GGTCAACAT-AGCCTGCAAGAAAATAACCGCCAAG-GTAGGCCTGTTGT
gi|11 : gaaatacATTGTGTCGTATATATGATAGTTCTACTATATTATCAAGAACAG-TTTTTCGTTGGGTTAAGACAATTAAGG-AG-----GGTGGGCGTGAG---GGGGGGGGA----GGTTCAGCATA-GCCTGTTGTTGCAGCAACAAGGAGGGAAACATTGGTGAGGTTAGACCTATGGTAAAAGAAGAATGACGG
gi|12 : GTTCTCACGTAACATTGAGAACTG-TTTTTCGTTGGGTTTAGAAATTTAAGG-GG-----GAACAGCAT-AG--------AAGATAACAGCTTAG-GTAAGCCTGTTGTTGAAGCAACAA--AGGAAAACATCGGTGTTGTTAGAGCTATTATAGAAGAAGATGAACGGT
gi|13 : AGGGACTTTCATTAAAGCCCCAGTTTCTTTGCAGTTATCGCCAAGAGAGAT---TTATTCTGAATTCTGTCGTATACATG--AGTTTTTCCGCAACATTTTTAACAG-TTTTTTGTTGGGTTAAGA
gi|14 : aaaaatG-GG-----GATCAGTAC-AGCCTGCAAGAAGATAACCGCCCAG-GCAGGCCTGTTGTTGCAGCAACAA--AGCAAAACCTTGGTGCTGTTAGAGCTATGATAGAAGAAGATTGACGGTca
gi|15 : AAGGCCTTACATTAAATACTGAATTTCTTTGAAGTTATCGCCAAAAAAGAT---TTATTCTGAATTGTGTCGTTTACAAGATAGTTCT
gi|16 : atAG-ACAGGCCTGTTGCTGCAGTAACAA--TAGCAAACATTGATGTTTTTg
gi|2 : AAGGGTTTACATTAAAGCCGGAGTGTTTTGGCAGTTATCGCCAAAAGAGAT---TTATTCTTAATTGTGTTGTATACATGATAGTTCTACTGTAACA-TAAGAACAG-TTTTTCGTTAGAATAAGAAATTCAAGGTGG-----GGTCAGCAT-AGTCTGCAAGAAGATAACCACCTAA-TTAGACCTGTTGTTGCAGCAACAA--AGGAAAACATGGGTGCTGTTAGAACTATGGTAGAAGAACATGGCCGGTtcttgaaaagttatt
gi|3 : gaaatGGGTTTACATTAAAGCCCGAGTTTCTTTGCAGTTATCACCAAAAGATAT---TTATTCTGAATTGTGTCGTTTACATGGTAGTTTTACCGTAACATTAAGAACGG-TTTTTCGTTTGGTTAGGAAATTTAA-G-GG-----GGTCAGCAT-AGCCGACAAGATGATAACCGCGCAG-GTAGGCATGTTGTTGCAGCAACAA--AGGCAAACATTGGTGCTGTTAGATCTATGATAGAAGAAGATGGACGGTA
gi|4 : gaaatacAAGGTCTTACATTAAAGCCAGAGTTTCTTTGAAGTAATCGCCAAAAAAGAT---TTATTCTACATTGAGTCGTATACTTGGTACTTCTACCGTGACATTAAGAACAG-TTTTTTGCTGTGTTAAGAAAAGTAA-A-GG-----GGTAAGCAT-AGCCTGCAAGAAGATAACAGCCCAG-GTAGGCCTGATGTTGCAGCAACTA--AGGAATACATTGGTGCTGTAAGAGCTATGGTAGAAGAAGATGGATGGTA
gi|5 : gaaatAAGGACTTACATTAAAGCCCGAGTTTCTTTGCAGTTATCGCCAAAAGAGAT---TTATTCTACATTGAGTCATATACATGGTAGTTCTACCGTGACATTAAGAACAG-TTTTTCGCTGGGTTAAGAAATTTAAAG-GG-----GGTCAGCTT-AGTCTGCAAGAAGATAACTGACCAG-GTAAGCCTGTTGTTGCAGCAACTA--AGGAATACATTGGTGCTGTAAGAGCTATGGT---AGAAGATGGACGGTA
gi|6 : AGGGCTTACATTAAAGCCAGAGTTTCTTTGCAGTTATCGCCAAAAGAGAT---TTATTCTGAATTGTATCGTATACATAATAGTTCTTCTGTAACATTAAGAACAG-TTTTTCATTGAGTTAAGAAATTTAAGG-GG-----GTTCAGCGT-AGCCTGCAAGAAGAAAACCACCCAG-GTAGGC--ATTGTTGCAGCAACA------AAAACATTGGTGCTGTTAGAGCTATGGTAGAAGAAGATGGACAGT
gi|7 : AAGGGCTTACATTAAAGCCCGA--------------ATCGCCAAAAGAGAT---TTATTCTGAATTGTGTCGTATACATGATAGTTCTACCGTAATATTAAGAGAAG-GTGTCCGTTGGGTTAAGAAATTTATGG-GGTGGTGGGTCAGCAT-AGTCTGCAAGAAGAAAACCGCCCAG-GAAGGCCTGTTGTTGCAGCAACAA--AGGAAAACATTGGTGTTGTTAGAGTTATTGTAAAATAAGATGG
gi|8 : gaaatAGAGCTAACATTAAAGCTTGAGTTTCTTTGCAGTTATCGCCAAAATAGAA---TTATTCTGAATTGTGTCGTATACATGATAGTTATACAGTAATATTACGAACAG-TTTTTTGTTGGGTTAAGAAATTTAA-G-GA-----GGTCAGCAT-AGCCT--------------GTCCAG-GTAAGCCTGCTGTTGCAGCAACAA--AGAAAAAAATTGGTGCTGTTAGAGCTATGGTAGAAGAAGTTTGACGGT
gi|9 : gaaattGGGCTGACATTAAAGCCTGAGTTTCTTTGCAGTTATCACCAAAAGATAT---TCATTCTGAATTGTGTCATATACATGATAGTTCTACGGTAACATTAAGAACAG-TTTTTCGTTGGGTTAAGAAATTTAAGG-GG-----AG-CAGTAT-AGTCTGCAACGAGACAATCGTCCTG-GTAGACCTGTTGTTGCAACAACAA--AGGAAAACATTGACGTT
Alignments
lowQualScore : 0 555 3 3 3 77777 3 2 1 2 44
lowQualScore : . ... . . . ..... . . . . ..
lowQualScore : 2 888 1 8 1 77777 1 6 8 9 22
consensus : AAGGGCTTACATTAAAGCCCGAGTTTCTTTGCAGTTATCGCCAAAAGAGAT---TTATTCTGAATTGTGTCGTATACATGATAGTTCTACCGTAACATTAAGAACAG-TTTTTCGTTGGGTTAAGAAATTTAAGG-GG-----GGTCAGCAT-AGCCTGCAAGAAGATAACCGCCCAG-GTAGGCCTGTTGTTGCAGCAACAA--AGGAAAACATTGGTGCTGTTAGAGCTATGGTAGAAGAAGATGGACGGTA
Reference ( family-2041 ) : AAGGGCTTACATTAAAGCCCGAGTTTCTTTGCAGTTATCGCCAAAAGAGAT---TTATTCTGAATTGTGTCGTATACATGATAGTTCTACCGTAACATTAAGAACAG-TTTTTCGTTGGGTTAAGAAATTTAAGG-GG-----GGTCAGCAT-AGCCTGCAAGAAGATAACCGCCCAG-GTAGGCCTGTTGTTGCAGCAACAA--AGGAAAACATTGGTGCTGTTAGAGCTATGGTAGAAGAAGATGGACGGTA
gi|1 : AAGGGCTTACATTAAAGCCCGAGACTCTTTGCAGTTGTCGCCAAGAGAGATGATTTATTCTGAATTTAATCGTATACATGATAATTTTATCGTAACATTAAGAACAG-TTTTTCGTTGGGATAAGAAGTTTAAGG-TG-----GGTCAACAT-GGCCTGCAAGAAGATAACCGCCCAG-GTAGGCCTGTTGTTGCAGCAGCAA--AGGAAAACATTGGTGCTGTAAGAGCGATAGTAGATGAAGATAGACGGCA
gi|10 : ataaGGGCTTACGTTAAAGACCGAGTTTCTCTGCAGTTATCACCAAAAGTGGT---TCATTCTGAATTGTGTCGTATACATGATAATCCTACTAAAACGTTACTAACAGTTTTTTTGTTGGGTTAAGAAATTTAAGG-GG-----GGTCAACAT-AGCCTGCAAGAAAATAACCGCCAAG-GTAGGCCTGTTGT
gi|11 : gaaatacATTGTGTCGTATATATGATAGTTCTACTATATTATCAAGAACAG-TTTTTCGTTGGGTTAAGACAATTAAGG-AG-----GGTGGGCGTGAG---GGGGGGGGA----GGTTCAGCATA-GCCTGTTGTTGCAGCAACAAGGAGGGAAACATTGGTGAGGTTAGACCTATGGTAAAAGAAGAATGACGG
gi|12 : GTTCTCACGTAACATTGAGAACTG-TTTTTCGTTGGGTTTAGAAATTTAAGG-GG-----GAACAGCAT-AG--------AAGATAACAGCTTAG-GTAAGCCTGTTGTTGAAGCAACAA--AGGAAAACATCGGTGTTGTTAGAGCTATTATAGAAGAAGATGAACGGT
gi|13 : AGGGACTTTCATTAAAGCCCCAGTTTCTTTGCAGTTATCGCCAAGAGAGAT---TTATTCTGAATTCTGTCGTATACATG--AGTTTTTCCGCAACATTTTTAACAG-TTTTTTGTTGGGTTAAGA
gi|14 : aaaaatG-GG-----GATCAGTAC-AGCCTGCAAGAAGATAACCGCCCAG-GCAGGCCTGTTGTTGCAGCAACAA--AGCAAAACCTTGGTGCTGTTAGAGCTATGATAGAAGAAGATTGACGGTca
gi|15 : AAGGCCTTACATTAAATACTGAATTTCTTTGAAGTTATCGCCAAAAAAGAT---TTATTCTGAATTGTGTCGTTTACAAGATAGTTCT
gi|16 : atAG-ACAGGCCTGTTGCTGCAGTAACAA--TAGCAAACATTGATGTTTTTg
gi|2 : AAGGGTTTACATTAAAGCCGGAGTGTTTTGGCAGTTATCGCCAAAAGAGAT---TTATTCTTAATTGTGTTGTATACATGATAGTTCTACTGTAACA-TAAGAACAG-TTTTTCGTTAGAATAAGAAATTCAAGGTGG-----GGTCAGCAT-AGTCTGCAAGAAGATAACCACCTAA-TTAGACCTGTTGTTGCAGCAACAA--AGGAAAACATGGGTGCTGTTAGAACTATGGTAGAAGAACATGGCCGGTtcttgaaaagttatt
gi|3 : gaaatGGGTTTACATTAAAGCCCGAGTTTCTTTGCAGTTATCACCAAAAGATAT---TTATTCTGAATTGTGTCGTTTACATGGTAGTTTTACCGTAACATTAAGAACGG-TTTTTCGTTTGGTTAGGAAATTTAA-G-GG-----GGTCAGCAT-AGCCGACAAGATGATAACCGCGCAG-GTAGGCATGTTGTTGCAGCAACAA--AGGCAAACATTGGTGCTGTTAGATCTATGATAGAAGAAGATGGACGGTA
gi|4 : gaaatacAAGGTCTTACATTAAAGCCAGAGTTTCTTTGAAGTAATCGCCAAAAAAGAT---TTATTCTACATTGAGTCGTATACTTGGTACTTCTACCGTGACATTAAGAACAG-TTTTTTGCTGTGTTAAGAAAAGTAA-A-GG-----GGTAAGCAT-AGCCTGCAAGAAGATAACAGCCCAG-GTAGGCCTGATGTTGCAGCAACTA--AGGAATACATTGGTGCTGTAAGAGCTATGGTAGAAGAAGATGGATGGTA
gi|5 : gaaatAAGGACTTACATTAAAGCCCGAGTTTCTTTGCAGTTATCGCCAAAAGAGAT---TTATTCTACATTGAGTCATATACATGGTAGTTCTACCGTGACATTAAGAACAG-TTTTTCGCTGGGTTAAGAAATTTAAAG-GG-----GGTCAGCTT-AGTCTGCAAGAAGATAACTGACCAG-GTAAGCCTGTTGTTGCAGCAACTA--AGGAATACATTGGTGCTGTAAGAGCTATGGT---AGAAGATGGACGGTA
gi|6 : AGGGCTTACATTAAAGCCAGAGTTTCTTTGCAGTTATCGCCAAAAGAGAT---TTATTCTGAATTGTATCGTATACATAATAGTTCTTCTGTAACATTAAGAACAG-TTTTTCATTGAGTTAAGAAATTTAAGG-GG-----GTTCAGCGT-AGCCTGCAAGAAGAAAACCACCCAG-GTAGGC--ATTGTTGCAGCAACA------AAAACATTGGTGCTGTTAGAGCTATGGTAGAAGAAGATGGACAGT
gi|7 : AAGGGCTTACATTAAAGCCCGA--------------ATCGCCAAAAGAGAT---TTATTCTGAATTGTGTCGTATACATGATAGTTCTACCGTAATATTAAGAGAAG-GTGTCCGTTGGGTTAAGAAATTTATGG-GGTGGTGGGTCAGCAT-AGTCTGCAAGAAGAAAACCGCCCAG-GAAGGCCTGTTGTTGCAGCAACAA--AGGAAAACATTGGTGTTGTTAGAGTTATTGTAAAATAAGATGG
gi|8 : gaaatAGAGCTAACATTAAAGCTTGAGTTTCTTTGCAGTTATCGCCAAAATAGAA---TTATTCTGAATTGTGTCGTATACATGATAGTTATACAGTAATATTACGAACAG-TTTTTTGTTGGGTTAAGAAATTTAA-G-GA-----GGTCAGCAT-AGCCT--------------GTCCAG-GTAAGCCTGCTGTTGCAGCAACAA--AGAAAAAAATTGGTGCTGTTAGAGCTATGGTAGAAGAAGTTTGACGGT
gi|9 : gaaattGGGCTGACATTAAAGCCTGAGTTTCTTTGCAGTTATCACCAAAAGATAT---TCATTCTGAATTGTGTCATATACATGATAGTTCTACGGTAACATTAAGAACAG-TTTTTCGTTGGGTTAAGAAATTTAAGG-GG-----AG-CAGTAT-AGTCTGCAACGAGACAATCGTCCTG-GTAGACCTGTTGTTGCAACAACAA--AGGAAAACATTGACGTT
blockSeqs : . T G T TGGTG G C T C GG
blockSeqs : . . G . . . C T . .
blockSeqs : . . G . . . T T . .
blockSeqs : . . G . . . C T . .
blockSeqs : . . A . . . C T . .
blockSeqs : . . G . . . T T . .
blockSeqs : . . G . . . C T . .
blockSeqs : . . G . . . T A . .
blockSeqs : . . . . . . C A . .
blockSeqs : . . . . . . T C . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : .
blockSeqCons : ***
originalCons : AAGGGCTTACATTAAAGCCCGAGTTTCTTTGCAGTTATCGCCAAAAGAGAT---TTATTCTGAATTGTGTCGTATACATGATAGTTCTACCGTAACATTAAGAACAG-TTTTTCGTTGGGTTAAGAAATTTAAGG-GG-----GGTCAGCAT-AGCCTGCAAGAAGATAACCGCCCAG-GTAGGCCTGTTGTTGCAGCAACAA--AGGAAAACATTGGTGCTGTTAGAGCTATGGTAGAAGAAGATGGACGGTA
finalCons : AAGGGCTTACATTAAAGCCCGAGTTTCTTTGCAGTTATCGCCAAAAGAGAT---TTATTCTGAATTGTGTCGTATACATGATAGTTCTACCGTAACATTAAGAACAG-TTTTTCGTTGGGTTAAGAAATTTAAGG-GG-----GGTCAGCAT-AGCCTGCAAGAAGATAACCGCCCAG-GTAGGCCTGTTGTTGCAGCAACAA--AGGAAAACATTGGTGCTGTTAGAGCTATGGTAGAAGAAGATGGACGGTA
Alignments
lowQualScore : 0 555 3 3 3 77777 3 2 1 2 44
lowQualScore : . ... . . . ..... . . . . ..
lowQualScore : 2 888 1 8 1 77777 1 6 8 9 22
consensus : AAGGGCTTACATTAAAGCCCGAGTTTCTTTGCAGTTATCGCCAAAAGAGAT---TTATTCTGAATTGTGTCGTATACATGATAGTTCTACCGTAACATTAAGAACAG-TTTTTCGTTGGGTTAAGAAATTTAAGG-GG-----GGTCAGCAT-AGCCTGCAAGAAGATAACCGCCCAG-GTAGGCCTGTTGTTGCAGCAACAA--AGGAAAACATTGGTGCTGTTAGAGCTATGGTAGAAGAAGATGGACGGTA
Reference ( family-2041 ) : AAGGGCTTACATTAAAGCCCGAGTTTCTTTGCAGTTATCGCCAAAAGAGAT---TTATTCTGAATTGTGTCGTATACATGATAGTTCTACCGTAACATTAAGAACAG-TTTTTCGTTGGGTTAAGAAATTTAAGG-GG-----GGTCAGCAT-AGCCTGCAAGAAGATAACCGCCCAG-GTAGGCCTGTTGTTGCAGCAACAA--AGGAAAACATTGGTGCTGTTAGAGCTATGGTAGAAGAAGATGGACGGTA
gi|1 : AAGGGCTTACATTAAAGCCCGAGACTCTTTGCAGTTGTCGCCAAGAGAGATGATTTATTCTGAATTTAATCGTATACATGATAATTTTATCGTAACATTAAGAACAG-TTTTTCGTTGGGATAAGAAGTTTAAGG-TG-----GGTCAACAT-GGCCTGCAAGAAGATAACCGCCCAG-GTAGGCCTGTTGTTGCAGCAGCAA--AGGAAAACATTGGTGCTGTAAGAGCGATAGTAGATGAAGATAGACGGCA
gi|10 : ataaGGGCTTACGTTAAAGACCGAGTTTCTCTGCAGTTATCACCAAAAGTGGT---TCATTCTGAATTGTGTCGTATACATGATAATCCTACTAAAACGTTACTAACAGTTTTTTTGTTGGGTTAAGAAATTTAAGG-GG-----GGTCAACAT-AGCCTGCAAGAAAATAACCGCCAAG-GTAGGCCTGTTGT
gi|11 : gaaatacATTGTGTCGTATATATGATAGTTCTACTATATTATCAAGAACAG-TTTTTCGTTGGGTTAAGACAATTAAGG-AG-----GGTGGGCGTGAG---GGGGGGGGA----GGTTCAGCATA-GCCTGTTGTTGCAGCAACAAGGAGGGAAACATTGGTGAGGTTAGACCTATGGTAAAAGAAGAATGACGG
gi|12 : GTTCTCACGTAACATTGAGAACTG-TTTTTCGTTGGGTTTAGAAATTTAAGG-GG-----GAACAGCAT-AG--------AAGATAACAGCTTAG-GTAAGCCTGTTGTTGAAGCAACAA--AGGAAAACATCGGTGTTGTTAGAGCTATTATAGAAGAAGATGAACGGT
gi|13 : AGGGACTTTCATTAAAGCCCCAGTTTCTTTGCAGTTATCGCCAAGAGAGAT---TTATTCTGAATTCTGTCGTATACATG--AGTTTTTCCGCAACATTTTTAACAG-TTTTTTGTTGGGTTAAGA
gi|14 : aaaaatG-GG-----GATCAGTAC-AGCCTGCAAGAAGATAACCGCCCAG-GCAGGCCTGTTGTTGCAGCAACAA--AGCAAAACCTTGGTGCTGTTAGAGCTATGATAGAAGAAGATTGACGGTca
gi|15 : AAGGCCTTACATTAAATACTGAATTTCTTTGAAGTTATCGCCAAAAAAGAT---TTATTCTGAATTGTGTCGTTTACAAGATAGTTCT
gi|16 : atAG-ACAGGCCTGTTGCTGCAGTAACAA--TAGCAAACATTGATGTTTTTg
gi|2 : AAGGGTTTACATTAAAGCCGGAGTGTTTTGGCAGTTATCGCCAAAAGAGAT---TTATTCTTAATTGTGTTGTATACATGATAGTTCTACTGTAACA-TAAGAACAG-TTTTTCGTTAGAATAAGAAATTCAAGGTGG-----GGTCAGCAT-AGTCTGCAAGAAGATAACCACCTAA-TTAGACCTGTTGTTGCAGCAACAA--AGGAAAACATGGGTGCTGTTAGAACTATGGTAGAAGAACATGGCCGGTtcttgaaaagttatt
gi|3 : gaaatGGGTTTACATTAAAGCCCGAGTTTCTTTGCAGTTATCACCAAAAGATAT---TTATTCTGAATTGTGTCGTTTACATGGTAGTTTTACCGTAACATTAAGAACGG-TTTTTCGTTTGGTTAGGAAATTTAA-G-GG-----GGTCAGCAT-AGCCGACAAGATGATAACCGCGCAG-GTAGGCATGTTGTTGCAGCAACAA--AGGCAAACATTGGTGCTGTTAGATCTATGATAGAAGAAGATGGACGGTA
gi|4 : gaaatacAAGGTCTTACATTAAAGCCAGAGTTTCTTTGAAGTAATCGCCAAAAAAGAT---TTATTCTACATTGAGTCGTATACTTGGTACTTCTACCGTGACATTAAGAACAG-TTTTTTGCTGTGTTAAGAAAAGTAA-A-GG-----GGTAAGCAT-AGCCTGCAAGAAGATAACAGCCCAG-GTAGGCCTGATGTTGCAGCAACTA--AGGAATACATTGGTGCTGTAAGAGCTATGGTAGAAGAAGATGGATGGTA
gi|5 : gaaatAAGGACTTACATTAAAGCCCGAGTTTCTTTGCAGTTATCGCCAAAAGAGAT---TTATTCTACATTGAGTCATATACATGGTAGTTCTACCGTGACATTAAGAACAG-TTTTTCGCTGGGTTAAGAAATTTAAAG-GG-----GGTCAGCTT-AGTCTGCAAGAAGATAACTGACCAG-GTAAGCCTGTTGTTGCAGCAACTA--AGGAATACATTGGTGCTGTAAGAGCTATGGT---AGAAGATGGACGGTA
gi|6 : AGGGCTTACATTAAAGCCAGAGTTTCTTTGCAGTTATCGCCAAAAGAGAT---TTATTCTGAATTGTATCGTATACATAATAGTTCTTCTGTAACATTAAGAACAG-TTTTTCATTGAGTTAAGAAATTTAAGG-GG-----GTTCAGCGT-AGCCTGCAAGAAGAAAACCACCCAG-GTAGGC--ATTGTTGCAGCAACA------AAAACATTGGTGCTGTTAGAGCTATGGTAGAAGAAGATGGACAGT
gi|7 : AAGGGCTTACATTAAAGCCCGA--------------ATCGCCAAAAGAGAT---TTATTCTGAATTGTGTCGTATACATGATAGTTCTACCGTAATATTAAGAGAAG-GTGTCCGTTGGGTTAAGAAATTTATGG-GGTGGTGGGTCAGCAT-AGTCTGCAAGAAGAAAACCGCCCAG-GAAGGCCTGTTGTTGCAGCAACAA--AGGAAAACATTGGTGTTGTTAGAGTTATTGTAAAATAAGATGG
gi|8 : gaaatAGAGCTAACATTAAAGCTTGAGTTTCTTTGCAGTTATCGCCAAAATAGAA---TTATTCTGAATTGTGTCGTATACATGATAGTTATACAGTAATATTACGAACAG-TTTTTTGTTGGGTTAAGAAATTTAA-G-GA-----GGTCAGCAT-AGCCT--------------GTCCAG-GTAAGCCTGCTGTTGCAGCAACAA--AGAAAAAAATTGGTGCTGTTAGAGCTATGGTAGAAGAAGTTTGACGGT
gi|9 : gaaattGGGCTGACATTAAAGCCTGAGTTTCTTTGCAGTTATCACCAAAAGATAT---TCATTCTGAATTGTGTCATATACATGATAGTTCTACGGTAACATTAAGAACAG-TTTTTCGTTGGGTTAAGAAATTTAAGG-GG-----AG-CAGTAT-AGTCTGCAACGAGACAATCGTCCTG-GTAGACCTGTTGTTGCAACAACAA--AGGAAAACATTGACGTT