lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111
lowQualScore : 1 22222 1 3333333 3333333333333333333333333333333333333333333333333333333333333333333333333 4444444444444444444444444444 11 11 11111 44444444444444 1 222222222 1 000000000000000000000
lowQualScore : 5 1 6 00000 1 6 0 0 8 1111111 2 1111111111111111111111111111111111111111111111111111111111111111111111111 2 0000000000000000000000000000 5555 44 1 2 11 6 4 4 00 11111 5 77777777777777 4 4 3 99 7 4 999999999 0 1 000000000000000000000
lowQualScore : . . . ..... . . . . . ....... . ......................................................................... . ............................ .... .. . . .. . . . .. ..... . .............. . . . .. . . ......... . . .....................
lowQualScore : 0 0 7 77777 0 7 2 5 8 2222222 0 0000000000000000000000000000000000000000000000000000000000000000000000000 2 5555555555555555555555555555 8888 88 8 2 00 6 0 6 00 55555 3 00000000000000 0 1 7 22 2 4 888888888 2 9 444444444444444444444
consensus : CGGAAAAGTCGTATTAATTGCAAAAAATGCAA-GTCGTATTTTGCTCAGTTGAAAAGATGGGGTGGTGAAATTTACG--AAAAAAA-ACG------------A-AAATACCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTATATATGTAATAGCACCGAAGATTTTTNTTTTTACAGGGACGANNNNNGTTCTTTTTTTGTGATTTTNCANGAAATGTNAA--TTTTAAGAAAGT-AATCTGCAAAA--ATGTTACCAGAAACGGGCACTTTTCCTTCG----ACTTT--------------TAGCA-TAAGGTCACGTGGATTCGCCACCGTAGT-AAAA-AATTGTAGCATTGTCTTTGCAGCTTCAGAAGTTGGTTCAAAAT----------AGAACGTTCTATTTTTCATGGAATGGAAAAA
Reference ( gi|3 ) : CGCAAAAGTCATATTAATTGCAACAAATACAAGGTTGTATTTGGCTCAGTTGTAAAGATGGGGTGATGAAAT--ATG--AAGAAAA-A--------------A-ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACTGAAGGTTCATATTTTTACAGAAATGGTGGTTGTCATTTTTTGGTCATTTTTTATGAAATGTTAA--TTTAAAGAAAGT-AATCTGTAAAA--ATGTTACCAGAAACGGGCACTTTTCCTTCA----ACCTT--------------TAGCA-TATGGTCATGTGGATTTGCCACAGTAGT-AAGA-AATCCCAGCATTGTCTTTGCAGCTTCACAAGT----------T----------AGAACGTTCTATTTTTCATGGAATGGAAAAA
gi|2 : CGGAAAAGTCATATTAATTGCAACAAATACAAGGTTGTATTTGGCTCAGTTGTAAAGATGGGGTGGTGAAAT--ATG--AAGAAAA-A--------------A-AAATACCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--TTTAAAGAAAGT-AATCTGTAAAA--ATGTTACCAGAAACAGACACTTTTCCTTCA----ACCTT--------------CAGCA-TATGGTCATGTGGATTCCCCACAGTAGT-AAGA-AATCCCAGCATTGTCTTTGCAGCTTCACAAGT----------T----------GGAACGTTCTATTTTTCATGGAATGGAAAAA
gi|5 : ccaAAAGCCGTATTTATTGCAAAACAT-C---GTCGTATTTTATTCAGTTGAAAAGATGGGGTGGTGAAAT--TTGCCAAAACAA-ATG------------A-TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCGAAGATTTTT-TTTTTACAGGGACGA-----GTTCTTTTTTTGTGATTTTTCATGAAATGTAAA--TTTTAAGAAAGT-TATTTGCAAAA--ATGTTACCAGAAACGGTCACTTTTCCTTCG----ACTTT--------------TAGCA-TA-----------------------AGT-AA-A-AAT-GTAGCATTGTCTTTGCAGCTTCAGAAGTTGGTTCAAAAT----------AGAACGTTTTATTTTTCATGGAATGG
gi|4 : ccatggcAAAGTCGTATTAACTGCAAAAAGTGTAATGTCGTATTTTGATCAGTTGAAAAGATGGGGTGTTGAAATTTACA--AAAAAAA-ACAAAAAACNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTATATATGTAATAGCACTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--TTTTAAGAAAGT-AATCTGCAAAAAAATGTTACCAGAAACAGGGACATTTCCATTG----ACTTT--------------TA-CA-TAAGGTCACGTAGACTCGCCACCGTAGTAAAAA-AATTATAGCATCGTCTGTGTAGCTTCAAAAG
gi|1 : atggtCTCAGTTGAAAAGATGGGATGGTGAAATTTACG--AAAAAAATA--------------ATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAAAGAAGGTTAATATGCAAAA--ATGTTAACAGAAACGGACACTTTTCCTTCG----ACTTT--------------TAGCA-TAAGGTCACGTGGATT----------------------------TTGCCACCGTAG-TTCAAAA------------T----------AGAACGTTTTATTTTCCACGGAATatgg
gi|10 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttATTTTGCAGGAAATGTTAA--TTTTAAGAAAGT-AATATGCAAAAAGATATTTTTAGAAACGGACCCTTTTCCTTCG----ATATC--------------TAACA-TAAGGTCAttccagcgttctattttgaaaacacatccc
gi|7 : ttgctttatgAAGAAAGT-AATCTGCAAAA--ATGTTACCAGAAATGGGCACTTTTGCTTTG----ACTTT--------------TAGCC-TAAGGTCATGTGGATTCGTCACCGTAGT-AAAAGGATTGTAGCATAGTCTTTGCAGCTTCAGAAGTTGGTTCAAAAT----------AGAACGTTCTATTTTTCATAGAATGAAAAAgtcacgttgatt
gi|8 : cAGAAAGT-AATCTGCGAAA--ATATTACCAGAAACGGACACTTTTCCGTTG----ACTTT--------------TAGCA-TAAGGTCACGTGGATTCGCCACTGTAGT-AAAACAATTGAAGCAGTGTCTTTGCAGTTTCAGAAGTTGGTTCAAAAT----------AGAACGTTCTATTTTACATAGATTGGAAAAta
gi|6 : AGAAAGT-AATCTGCGAAA--ATGTCACCAGAAACAGGCACTTTTCCCTCG----ACTTT--------------AAGCA-TAAGGTCACGTAGATTCGCCACCGTAGT-AAAACAATTGTAGCAGTGTCTTTGTAGTTTCAGAAGT----------TGGTTTAAAAGAGAATGTTCTATATTTCATGGAATGGTAAgg
gi|11 : ttAAAGT-TATCTGCAAAA--ATGTTACCTGAAGTAGGAACTTTT-CTCCATTGCACTTTTTTGCACCACTCCATACCA-TAAAGTCACATGGGTTTACCAttg
gi|14 : AGT-TATCTTCAAAA--ATGTTACCTGAAGCAGGCATTGTTCC
gi|13 : GCAAAA--ATGTTACACGAAGCGGGCAATTTTCTTTCG----ATTTTTTTTCACCGCGCCATAGCATTAT-ATCACGTGGGTTCGCCATAGT-GT-A
gi|12 : CTACACCAGT-AGAA-AATTGTGGCATTGTCTCTGCAGCTTCAGAAGTTGGTTCAAAAT----------AGAATGTTCTATTTTTCATGAAATGt
gi|16 : tt----------T----------AGAACGTTCTATTTTTCATTGAATAGAAAAtatcaaaag
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): GAAATTTATAAAAATTTAATAAACACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
Unaligned ( gi|15 ): TCAGAATGACAACGAACGGAACTATCTTAAACATACATC
Unaligned ( gi|17 ): CACCCCATAACATAAAGTCACATGGGTTCACCAC
Alignments
lowQualScore : 2222222 11 7777777777777777777777777777777777777777777777777777777 22222 44444444444444 1
lowQualScore : 3 3 4444444 0 1 11 0 4444444444444444444444444444444444444444444444444444444 2 8 44444 1 1 1 1 77 3 44 44 44 3 22222222222222 0 7777 3 1 4 3 2 4 1 3
lowQualScore : . . ....... . . .. . ....................................................... . . ..... . . . . .. . .. .. .. . .............. . .... . . . . . . . .
lowQualScore : 5 0 8888888 6 4 22 8 4444444444444444444444444444444444444444444444444444444 2 8 00000 6 0 0 0 99 6 66 66 66 6 77777777777777 2 7777 6 6 0 3 7 4 1 1
consensus : CGGNAAAGTCGTATTAATTGCAANAAATACAA-GGTCGTATTTTGCTCAGTTGAAAAGATGGGGTGGTGAAATTTACGAAAAAAAATAA-AAA------------TACCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTATATATGTAATAGCACCGAAGGTTCNTATTTTTACAGGGACGGTGGTTGTCNTTTTTTTGTGATTTTTCATGAAATGTTAATTTT--AAGAAAG-TAATCTGC--AAAA--ATGTTACCAGAAACGGGCACTTT--TCCTTCG-ACTTT--------------TAGCATAAG----GTCACGTGGA-TTCGCCACCGTAGT-AAAA-AATTGTAGCATTGTCTTTGCAGCTTCA-GAAGTTGGTTCAAAATAGAACGTTCTATTTTTCATGGAATGGAAAAA
Reference ( family-1410 ) : CGGAAAAGTCGTATTAATTGCAAAAAATGCAA-G-TCGTATTTTGCTCAGTTGAAAAGATGGGGTGGTGAAATTTACGAAAAAAAACGA-AAA------------TACCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTATATATGTAATAGCACCGAAGATTTTTNTTTTTACAGGGACGANNNNNGTTCTTTTTTTGTGATTTTNCANGAAATGTNAATTTT--AAGAAAG-TAATCTGC--AAAA--ATGTTACCAGAAACGGGCACTTT--TCCTTCG-ACTTT--------------TAGCATAAG----GTCACGTGGA-TTCGCCACCGTAGT-AAAA-AATTGTAGCATTGTCTTTGCAGCTTCA-GAAGTTGGTTCAAAATAGAACGTTCTATTTTTCATGGAATGGAAAAA
gi|1 : TTTTCTCAGTTGAAAAGATGGGATGGTGAAATTTACG-AAAAAAATAATAAN------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAAAGAAGGTTAATATGC--AAAA--ATGTTAACAGAAACGGACACTTT--TCCTTCG-ACTTT--------------TAGCATAAG----GTCACGTGGATTTTGCCACCGTAGT-TCAA-AATAG-AACGTTTTATTT-----TCCACGGAATT--TCC-------AGCGTTCTATTTT
gi|10 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTATGATTTTGCAGGAAATGTTAATTTT--AAGAAAG-TAATATGC--AAAAAGATATTTTTAGAAACGGACCCTTT--TCCTTCG-ATATC--------------TAACATAAGGTCAGTCACGTTGA-TTgaaaacacatccc
gi|11 : ttgcAAAG-TTATCTGC--AAAA--ATGTTACCTGAAGTAGGAACTTTTCTCCATTGCACTTTTTTGCACCACTCCATACCATAAA----GTCACATGGG-TTTACCA
gi|12 : CACC--AGT-AGAA-AATTGTGGCATTGTCTCTGCAGCTTCA-GAAGTTGGTTCAAAATAGAATGTTCTATTTTTCATGAAATG
gi|13 : ttctaGC--AAAA--ATGTTACACGAAGCGGGCAATTT--TCTTTCG-ATTTTTTTTCACCGCGCCATAGCATTAT----ATCACGTGGG-TTCGCCA---TAGT-tatcaaaag
gi|14 : AG-TTATCTTC--AAAA--ATGTTACCTGAAGCAGGCATTGT--TCCgtat
gi|16 : ATAGAACGTTCTATTTTTCATTGAATAGAAAA
gi|2 : CGGAAAAGTCATATTAATTGCAACAAATACAA-GGTTGTATTTGGCTCAGTTGTAAAGATGGGGTGGTGAAAT--ATGAAGAAAAA--A-AAA------------TACCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTA--AAGAAAG-TAATCTGT--AAAA--ATGTTACCAGAAACAGACACTTT--TCCTTCA-ACCTT--------------CAGCATATG----GTCATGTGGA-TTCCCCACAGTAGT-AAGA-AATCCCAGCATTGTCTTTGCAGCTTCA-CAAGTTG----------GAACGTTCTATTTTTCATGGAATGGAAAAAtaga
gi|3 : ccaCGCAAAAGTCATATTAATTGCAACAAATACAA-GGTTGTATTTGGCTCAGTTGTAAAGATGGGGTGATGAAAT--ATGAAGAAAAA--A-ANN------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACTGAAGGTTCATATTTTTACAGAAATGGTGGTTGTCATTTTTTGGTCATTTTTTATGAAATGTTAATTTA--AAGAAAG-TAATCTGT--AAAA--ATGTTACCAGAAACGGGCACTTT--TCCTTCA-ACCTT--------------TAGCATATG----GTCATGTGGA-TTTGCCACAGTAGT-AAGA-AATCCCAGCATTGTCTTTGCAGCTTCA-CAAGT----------TAGAACGTTCTATTTTTCATGGAATGGAAAAA
gi|4 : GGTAAAGTCGTATTAACTGCAAAAAGTGTAATG-TCGTATTTTGATCAGTTGAAAAGATGGGGTGTTGAAATTTACAAAAAAAAACAA-AAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTATATATGTAATAGCACTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTT--AAGAAAG-TAATCTGCAAAAAA--ATGTTACCAGAAACAGGGACATT--TCCATTG-ACTTT--------------TA-CATAAG----GTCACGTAGA-CTCGCCACCGTAGTAAAAA-AATTATAGCATCGTCTGTGTAGCTTCA-AAAGATGG
gi|5 : atGGCAAAGCCGTATTTATTGCAAAACAT-C---G-TCGTATTTTATTCAGTTGAAAAGATGGGGTGGTGAAATTTGCCAAAACAAATGA-TNN------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCGAAGATTTTT-TTTTTACAGGGACGA-----GTTCTTTTTTTGTGATTTTTCATGAAATGTAAATTTT--AAGAAAG-TTATTTGC--AAAA--ATGTTACCAGAAACGGTCACTTT--TCCTTCG-ACTTT--------------TAGCATA----------------------------AGT-AAAA-A--TGTAGCATTGTCTTTGCAGCTTCA-GAAGTTGGTTCAAAATAGAACGTTTTATTTTTCATGGAATGG
gi|6 : ccatAGAAAG-TAATCTGC--GAAA--ATGTCACCAGAAACAGGCACTTT--TCCCTCG-ACTTT--------------AAGCATAAG----GTCACGTAGA-TTCGCCACCGTAGT-AAAACAATTGTAGCAGTGTCTTTGTAGTTTCA-GAAGTTGGTTTAAAAGAGAATGTTCTATATTTCATGGAATGGTAA
gi|7 : tt--AAGAAAG-TAATCTGC--AAAA--ATGTTACCAGAAATGGGCACTTT--TGCTTTG-ACTTT--------------TAGCCTAAG----GTCATGTGGA-TTCGTCACCGTAGT-AAAAGGATTGTAGCATAGTCTTTGCAGCTTCA-GAAGTTGGTTCAAAATAGAACGTTCTATTTTTCATAGAATGAAAAAttg
gi|8 : cAGAAAG-TAATCTGC--GAAA--ATATTACCAGAAACGGACACTTT--TCCGTTG-ACTTT--------------TAGCATAAG----GTCACGTGGA-TTCGCCACTGTAGT-AAAACAATTGAAGCAGTGTCTTTGCAGTTTCA-GAAGTTGGTTCAAAATAGAACGTTCTATTTTACATAGATTGGAAAAta
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GAAATTTATAAAAATTTAATAAACACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
Unaligned ( gi|15 ): TCAGAATGACAACGAACGGAACTATCTTAAACATACATC
Unaligned ( gi|17 ): CACCCCATAACATAAAGTCACATGGGTTCACCAC
Alignments
lowQualScore : 11 6666666666666666666666666666666666666666666666666666666 11111 44444444444444 1
lowQualScore : 1 1 7 3 2 0 1 11 0 8888888888888888888888888888888888888888888888888888888 1 6 33333 1 0 77 3 44 44 44 3 22222222222222 0 7777 3 1 4 3 2 4 1 3
lowQualScore : . . . . . . . .. . ....................................................... . . ..... . . .. . .. .. .. . .............. . .... . . . . . . . .
lowQualScore : 0 0 0 2 5 6 4 22 8 8888888888888888888888888888888888888888888888888888888 0 8 66666 0 3 99 6 66 66 66 6 77777777777777 2 7777 6 6 0 3 7 4 1 1
consensus : CGGNAAAGTCGTATTAATTGCAANAAATACAAGGTCGTATTTTGCTCAGTTGAAAAGATGGGGTGGTGAAATTTACGAAAAAAAATAA-AAA------------TACCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTATATATGTAATAGCACCGAAGGTTCNTATTTTTACAGGGACGGTGGTTGTCNTTTTTTTGTGATTTTTCATGAAATGTTAATTTT--AAGAAAG-TAATCTGC--AAAA--ATGTTACCAGAAACGGGCACTTT--TCCTTCG-ACTTT--------------TAGCATAAG----GTCACGTGGA-TTCGCCACCGTAGT-AAAA-AATTGTAGCATTGTCTTTGCAGCTTCA-GAAGTTGGTTCAAAATAGAACGTTCTATTTTTCATGGAATGGAAAAA
Reference ( family-1410 ) : CGGNAAAGTCGTATTAATTGCAANAAATACAAGGTCGTATTTTGCTCAGTTGAAAAGATGGGGTGGTGAAATTTACGAAAAAAAATAA-AAA------------TACCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTATATATGTAATAGCACCGAAGGTTCNTATTTTTACAGGGACGGTGGTTGTCNTTTTTTTGTGATTTTTCATGAAATGTTAATTTT--AAGAAAG-TAATCTGC--AAAA--ATGTTACCAGAAACGGGCACTTT--TCCTTCG-ACTTT--------------TAGCATAAG----GTCACGTGGA-TTCGCCACCGTAGT-AAAA-AATTGTAGCATTGTCTTTGCAGCTTCA-GAAGTTGGTTCAAAATAGAACGTTCTATTTTTCATGGAATGGAAAAA
gi|1 : TTTTCTCAGTTGAAAAGATGGGATGGTGAAATTTACG-AAAAAAATAATAAN------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAAAGAAGGTTAATATGC--AAAA--ATGTTAACAGAAACGGACACTTT--TCCTTCG-ACTTT--------------TAGCATAAG----GTCACGTGGATTTTGCCACCGTAGT-TCAA-AATAG-AACGTTTTATTT-----TCCACGGAATT--TCC-------AGCGTTCTATTTT
gi|10 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTATGATTTTGCAGGAAATGTTAATTTT--AAGAAAG-TAATATGC--AAAAAGATATTTTTAGAAACGGACCCTTT--TCCTTCG-ATATC--------------TAACATAAGGTCAGTCACGTTGA-TTgaaaacacatccc
gi|11 : ttgcAAAG-TTATCTGC--AAAA--ATGTTACCTGAAGTAGGAACTTTTCTCCATTGCACTTTTTTGCACCACTCCATACCATAAA----GTCACATGGG-TTTACCA
gi|12 : CACC--AGT-AGAA-AATTGTGGCATTGTCTCTGCAGCTTCA-GAAGTTGGTTCAAAATAGAATGTTCTATTTTTCATGAAATG
gi|13 : ttctaGC--AAAA--ATGTTACACGAAGCGGGCAATTT--TCTTTCG-ATTTTTTTTCACCGCGCCATAGCATTAT----ATCACGTGGG-TTCGCCA---TAGT-tatcaaaag
gi|14 : AG-TTATCTTC--AAAA--ATGTTACCTGAAGCAGGCATTGT--TCCgtat
gi|16 : ATAGAACGTTCTATTTTTCATTGAATAGAAAA
gi|2 : CGGAAAAGTCATATTAATTGCAACAAATACAAGGTTGTATTTGGCTCAGTTGTAAAGATGGGGTGGTGAAAT--ATGAAGAAAAA--A-AAA------------TACCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTA--AAGAAAG-TAATCTGT--AAAA--ATGTTACCAGAAACAGACACTTT--TCCTTCA-ACCTT--------------CAGCATATG----GTCATGTGGA-TTCCCCACAGTAGT-AAGA-AATCCCAGCATTGTCTTTGCAGCTTCA-CAAGTTG----------GAACGTTCTATTTTTCATGGAATGGAAAAAtaga
gi|3 : ccaCGCAAAAGTCATATTAATTGCAACAAATACAAGGTTGTATTTGGCTCAGTTGTAAAGATGGGGTGATGAAAT--ATGAAGAAAAA--A-ANN------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACTGAAGGTTCATATTTTTACAGAAATGGTGGTTGTCATTTTTTGGTCATTTTTTATGAAATGTTAATTTA--AAGAAAG-TAATCTGT--AAAA--ATGTTACCAGAAACGGGCACTTT--TCCTTCA-ACCTT--------------TAGCATATG----GTCATGTGGA-TTTGCCACAGTAGT-AAGA-AATCCCAGCATTGTCTTTGCAGCTTCA-CAAGT----------TAGAACGTTCTATTTTTCATGGAATGGAAAAA
gi|4 : GGTAAAGTCGTATTAACTGCAAAAAGTGTAATGTCGTATTTTGATCAGTTGAAAAGATGGGGTGTTGAAATTTACAAAAAAAAACAA-AAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTATATATGTAATAGCACTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTT--AAGAAAG-TAATCTGCAAAAAA--ATGTTACCAGAAACAGGGACATT--TCCATTG-ACTTT--------------TA-CATAAG----GTCACGTAGA-CTCGCCACCGTAGTAAAAA-AATTATAGCATCGTCTGTGTAGCTTCA-AAAGATGG
gi|5 : atGGCAAAGCCGTATTTATTGCAAAACAT-C---GTCGTATTTTATTCAGTTGAAAAGATGGGGTGGTGAAATTTGCCAAAACAAATGA-TNN------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCGAAGATTTTT-TTTTTACAGGGACGA-----GTTCTTTTTTTGTGATTTTTCATGAAATGTAAATTTT--AAGAAAG-TTATTTGC--AAAA--ATGTTACCAGAAACGGTCACTTT--TCCTTCG-ACTTT--------------TAGCATA----------------------------AGT-AAAA-A--TGTAGCATTGTCTTTGCAGCTTCA-GAAGTTGGTTCAAAATAGAACGTTTTATTTTTCATGGAATGG
gi|6 : ccatAGAAAG-TAATCTGC--GAAA--ATGTCACCAGAAACAGGCACTTT--TCCCTCG-ACTTT--------------AAGCATAAG----GTCACGTAGA-TTCGCCACCGTAGT-AAAACAATTGTAGCAGTGTCTTTGTAGTTTCA-GAAGTTGGTTTAAAAGAGAATGTTCTATATTTCATGGAATGGTAA
gi|7 : tt--AAGAAAG-TAATCTGC--AAAA--ATGTTACCAGAAATGGGCACTTT--TGCTTTG-ACTTT--------------TAGCCTAAG----GTCATGTGGA-TTCGTCACCGTAGT-AAAAGGATTGTAGCATAGTCTTTGCAGCTTCA-GAAGTTGGTTCAAAATAGAACGTTCTATTTTTCATAGAATGAAAAAttg
gi|8 : cAGAAAG-TAATCTGC--GAAA--ATATTACCAGAAACGGACACTTT--TCCGTTG-ACTTT--------------TAGCATAAG----GTCACGTGGA-TTCGCCACTGTAGT-AAAACAATTGAAGCAGTGTCTTTGCAGTTTCA-GAAGTTGGTTCAAAATAGAACGTTCTATTTTACATAGATTGGAAAAta
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GAAATTTATAAAAATTTAATAAACACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
Unaligned ( gi|15 ): TCAGAATGACAACGAACGGAACTATCTTAAACATACATC
Unaligned ( gi|17 ): CACCCCATAACATAAAGTCACATGGGTTCACCAC
Alignments
lowQualScore : 11 6666666666666666666666666666666666666666666666666666666 11111 44444444444444 1
lowQualScore : 1 1 7 3 2 0 1 11 0 8888888888888888888888888888888888888888888888888888888 1 6 33333 1 0 77 3 44 44 44 3 22222222222222 0 7777 3 1 4 3 2 4 1 3
lowQualScore : . . . . . . . .. . ....................................................... . . ..... . . .. . .. .. .. . .............. . .... . . . . . . . .
lowQualScore : 0 0 0 2 5 6 4 22 8 8888888888888888888888888888888888888888888888888888888 0 8 66666 0 3 99 6 66 66 66 6 77777777777777 2 7777 6 6 0 3 7 4 1 1
consensus : CGGNAAAGTCGTATTAATTGCAANAAATACAAGGTCGTATTTTGCTCAGTTGAAAAGATGGGGTGGTGAAATTTACGAAAAAAAATAA-AAA------------TACCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTATATATGTAATAGCACCGAAGGTTCNTATTTTTACAGGGACGGTGGTTGTCNTTTTTTTGTGATTTTTCATGAAATGTTAATTTT--AAGAAAG-TAATCTGC--AAAA--ATGTTACCAGAAACGGGCACTTT--TCCTTCG-ACTTT--------------TAGCATAAG----GTCACGTGGA-TTCGCCACCGTAGT-AAAA-AATTGTAGCATTGTCTTTGCAGCTTCA-GAAGTTGGTTCAAAATAGAACGTTCTATTTTTCATGGAATGGAAAAA
Reference ( family-1410 ) : CGGNAAAGTCGTATTAATTGCAANAAATACAAGGTCGTATTTTGCTCAGTTGAAAAGATGGGGTGGTGAAATTTACGAAAAAAAATAA-AAA------------TACCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTATATATGTAATAGCACCGAAGGTTCNTATTTTTACAGGGACGGTGGTTGTCNTTTTTTTGTGATTTTTCATGAAATGTTAATTTT--AAGAAAG-TAATCTGC--AAAA--ATGTTACCAGAAACGGGCACTTT--TCCTTCG-ACTTT--------------TAGCATAAG----GTCACGTGGA-TTCGCCACCGTAGT-AAAA-AATTGTAGCATTGTCTTTGCAGCTTCA-GAAGTTGGTTCAAAATAGAACGTTCTATTTTTCATGGAATGGAAAAA
gi|1 : TTTTCTCAGTTGAAAAGATGGGATGGTGAAATTTACG-AAAAAAATAATAAN------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAAAGAAGGTTAATATGC--AAAA--ATGTTAACAGAAACGGACACTTT--TCCTTCG-ACTTT--------------TAGCATAAG----GTCACGTGGATTTTGCCACCGTAGT-TCAA-AATAG-AACGTTTTATTT-----TCCACGGAATT--TCC-------AGCGTTCTATTTT
gi|10 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTATGATTTTGCAGGAAATGTTAATTTT--AAGAAAG-TAATATGC--AAAAAGATATTTTTAGAAACGGACCCTTT--TCCTTCG-ATATC--------------TAACATAAGGTCAGTCACGTTGA-TTgaaaacacatccc
gi|11 : ttgcAAAG-TTATCTGC--AAAA--ATGTTACCTGAAGTAGGAACTTTTCTCCATTGCACTTTTTTGCACCACTCCATACCATAAA----GTCACATGGG-TTTACCA
gi|12 : CACC--AGT-AGAA-AATTGTGGCATTGTCTCTGCAGCTTCA-GAAGTTGGTTCAAAATAGAATGTTCTATTTTTCATGAAATG
gi|13 : ttctaGC--AAAA--ATGTTACACGAAGCGGGCAATTT--TCTTTCG-ATTTTTTTTCACCGCGCCATAGCATTAT----ATCACGTGGG-TTCGCCA---TAGT-tatcaaaag
gi|14 : AG-TTATCTTC--AAAA--ATGTTACCTGAAGCAGGCATTGT--TCCgtat
gi|16 : ATAGAACGTTCTATTTTTCATTGAATAGAAAA
gi|2 : CGGAAAAGTCATATTAATTGCAACAAATACAAGGTTGTATTTGGCTCAGTTGTAAAGATGGGGTGGTGAAAT--ATGAAGAAAAA--A-AAA------------TACCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTA--AAGAAAG-TAATCTGT--AAAA--ATGTTACCAGAAACAGACACTTT--TCCTTCA-ACCTT--------------CAGCATATG----GTCATGTGGA-TTCCCCACAGTAGT-AAGA-AATCCCAGCATTGTCTTTGCAGCTTCA-CAAGTTG----------GAACGTTCTATTTTTCATGGAATGGAAAAAtaga
gi|3 : ccaCGCAAAAGTCATATTAATTGCAACAAATACAAGGTTGTATTTGGCTCAGTTGTAAAGATGGGGTGATGAAAT--ATGAAGAAAAA--A-ANN------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACTGAAGGTTCATATTTTTACAGAAATGGTGGTTGTCATTTTTTGGTCATTTTTTATGAAATGTTAATTTA--AAGAAAG-TAATCTGT--AAAA--ATGTTACCAGAAACGGGCACTTT--TCCTTCA-ACCTT--------------TAGCATATG----GTCATGTGGA-TTTGCCACAGTAGT-AAGA-AATCCCAGCATTGTCTTTGCAGCTTCA-CAAGT----------TAGAACGTTCTATTTTTCATGGAATGGAAAAA
gi|4 : GGTAAAGTCGTATTAACTGCAAAAAGTGTAATGTCGTATTTTGATCAGTTGAAAAGATGGGGTGTTGAAATTTACAAAAAAAAACAA-AAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTATATATGTAATAGCACTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTT--AAGAAAG-TAATCTGCAAAAAA--ATGTTACCAGAAACAGGGACATT--TCCATTG-ACTTT--------------TA-CATAAG----GTCACGTAGA-CTCGCCACCGTAGTAAAAA-AATTATAGCATCGTCTGTGTAGCTTCA-AAAGATGG
gi|5 : atGGCAAAGCCGTATTTATTGCAAAACAT-C---GTCGTATTTTATTCAGTTGAAAAGATGGGGTGGTGAAATTTGCCAAAACAAATGA-TNN------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCGAAGATTTTT-TTTTTACAGGGACGA-----GTTCTTTTTTTGTGATTTTTCATGAAATGTAAATTTT--AAGAAAG-TTATTTGC--AAAA--ATGTTACCAGAAACGGTCACTTT--TCCTTCG-ACTTT--------------TAGCATA----------------------------AGT-AAAA-A--TGTAGCATTGTCTTTGCAGCTTCA-GAAGTTGGTTCAAAATAGAACGTTTTATTTTTCATGGAATGG
gi|6 : ccatAGAAAG-TAATCTGC--GAAA--ATGTCACCAGAAACAGGCACTTT--TCCCTCG-ACTTT--------------AAGCATAAG----GTCACGTAGA-TTCGCCACCGTAGT-AAAACAATTGTAGCAGTGTCTTTGTAGTTTCA-GAAGTTGGTTTAAAAGAGAATGTTCTATATTTCATGGAATGGTAA
gi|7 : tt--AAGAAAG-TAATCTGC--AAAA--ATGTTACCAGAAATGGGCACTTT--TGCTTTG-ACTTT--------------TAGCCTAAG----GTCATGTGGA-TTCGTCACCGTAGT-AAAAGGATTGTAGCATAGTCTTTGCAGCTTCA-GAAGTTGGTTCAAAATAGAACGTTCTATTTTTCATAGAATGAAAAAttg
gi|8 : cAGAAAG-TAATCTGC--GAAA--ATATTACCAGAAACGGACACTTT--TCCGTTG-ACTTT--------------TAGCATAAG----GTCACGTGGA-TTCGCCACTGTAGT-AAAACAATTGAAGCAGTGTCTTTGCAGTTTCA-GAAGTTGGTTCAAAATAGAACGTTCTATTTTACATAGATTGGAAAAta
blockSeqs : A C A A G T TT CAAAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN N N NNNNN N . . AA AG TC C TTTGCACCACTCCA GTCA . C A C T . G A
blockSeqs : T A G A T T TT TGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN A A TGGTT A . . . . . . TTTTCACCGCGCCA . . A . G C . G A
blockSeqs : C A . . . A . AAAATACCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN N N NNNNN N . . . . . . . . . A . C C . G A
blockSeqs : A . AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN T . . C . . . . . . . . . C . . T . G A
blockSeqs : . . . . . . . . . C . . T . G A
blockSeqs : . . . . . . . . . C . . T . G .
blockSeqs : . . . . . . . . T . . T . . .
blockSeqs : . . . . . . . . . . . A . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . .
blockSeqCons : ** **
originalCons : CGGNAAAGTCGTATTAATTGCAANAAATACAAGGTCGTATTTTGCTCAGTTGAAAAGATGGGGTGGTGAAATTTACGAAAAAAAATAA-AAA------------TACCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTATATATGTAATAGCACCGAAGGTTCNTATTTTTACAGGGACGGTGGTTGTCNTTTTTTTGTGATTTTTCATGAAATGTTAATTTT--AAGAAAG-TAATCTGC--AAAA--ATGTTACCAGAAACGGGCACTTT--TCCTTCG-ACTTT--------------TAGCATAAG----GTCACGTGGA-TTCGCCACCGTAGT-AAAA-AATTGTAGCATTGTCTTTGCAGCTTCA-GAAGTTGGTTCAAAATAGAACGTTCTATTTTTCATGGAATGGAAAAA
finalCons : CGGNAAAGTCGTATTAATTGCAANAAATACAAGGTCGTATTTTGCTCAGTTGAAAAGATGGGGTGGTGAAAT--ACGAAAAAAAATAA-AAA------------TACCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTATATATGTAATAGCACCGAAGGTTCNTATTTTTACAGGGACGGTGGTTGTCNTTTTTTTGTGATTTTTCATGAAATGTTAATTTT--AAGAAAG-TAATCTGC--AAAA--ATGTTACCAGAAACGGGCACTTT--TCCTTCG-ACTTT--------------TAGCATAAG----GTCACGTGGA-TTCGCCACCGTAGT-AAAA-AATTGTAGCATTGTCTTTGCAGCTTCA-GAAGTTGGTTCAAAATAGAACGTTCTATTTTTCATGGAATGGAAAAA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GAAATTTATAAAAATTTAATAAACACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
Unaligned ( gi|15 ): TCAGAATGACAACGAACGGAACTATCTTAAACATACATC
Unaligned ( gi|17 ): CACCCCATAACATAAAGTCACATGGGTTCACCAC
Alignments
lowQualScore : 22222 6666666666666666666666666666666666666666666666666666666 11111 44444444444444 1
lowQualScore : 1 1 7 3 2 0 1 44444 0 8888888888888888888888888888888888888888888888888888888 1 6 33333 1 0 77 3 44 44 44 3 22222222222222 0 7777 3 1 4 3 2 4 1 3
lowQualScore : . . . . . . . ..... . ....................................................... . . ..... . . .. . .. .. .. . .............. . .... . . . . . . . .
lowQualScore : 0 0 0 2 5 6 4 00000 8 8888888888888888888888888888888888888888888888888888888 0 8 66666 0 3 99 6 66 66 66 6 77777777777777 2 7777 6 6 0 3 7 4 1 1
consensus : CGGNAAAGTCGTATTAATTGCAANAAATACAAGGTCGTATTTTGCTCAGTTGAAAAGATGGGGTGGTGAAA--TTTACGAAAAAAAATAA-AAA------------TACCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTATATATGTAATAGCACCGAAGGTTCNTATTTTTACAGGGACGGTGGTTGTCNTTTTTTTGTGATTTTTCATGAAATGTTAATTTT--AAGAAAG-TAATCTGC--AAAA--ATGTTACCAGAAACGGGCACTTT--TCCTTCG-ACTTT--------------TAGCATAAG----GTCACGTGGA-TTCGCCACCGTAGT-AAAA-AATTGTAGCATTGTCTTTGCAGCTTCA-GAAGTTGGTTCAAAATAGAACGTTCTATTTTTCATGGAATGGAAAAA
Reference ( family-1410 ) : CGGNAAAGTCGTATTAATTGCAANAAATACAAGGTCGTATTTTGCTCAGTTGAAAAGATGGGGTGGTGAAA--T--ACGAAAAAAAATAA-AAA------------TACCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTATATATGTAATAGCACCGAAGGTTCNTATTTTTACAGGGACGGTGGTTGTCNTTTTTTTGTGATTTTTCATGAAATGTTAATTTT--AAGAAAG-TAATCTGC--AAAA--ATGTTACCAGAAACGGGCACTTT--TCCTTCG-ACTTT--------------TAGCATAAG----GTCACGTGGA-TTCGCCACCGTAGT-AAAA-AATTGTAGCATTGTCTTTGCAGCTTCA-GAAGTTGGTTCAAAATAGAACGTTCTATTTTTCATGGAATGGAAAAA
gi|1 : TTTTCTCAGTTGAAAAGATGGGATGGTGAAATTT--ACG-AAAAAAATAATAAN------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAAAGAAGGTTAATATGC--AAAA--ATGTTAACAGAAACGGACACTTT--TCCTTCG-ACTTT--------------TAGCATAAG----GTCACGTGGATTTTGCCACCGTAGT-TCAA-AATAG-AACGTTTTATTT-----TCCACGGAATT--TCC-------AGCGTTCTATTTT
gi|10 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTATGATTTTGCAGGAAATGTTAATTTT--AAGAAAG-TAATATGC--AAAAAGATATTTTTAGAAACGGACCCTTT--TCCTTCG-ATATC--------------TAACATAAGGTCAGTCACGTTGA-TTgaaaacacatccc
gi|11 : ttgcAAAG-TTATCTGC--AAAA--ATGTTACCTGAAGTAGGAACTTTTCTCCATTGCACTTTTTTGCACCACTCCATACCATAAA----GTCACATGGG-TTTACCA
gi|12 : CACC--AGT-AGAA-AATTGTGGCATTGTCTCTGCAGCTTCA-GAAGTTGGTTCAAAATAGAATGTTCTATTTTTCATGAAATG
gi|13 : ttctaGC--AAAA--ATGTTACACGAAGCGGGCAATTT--TCTTTCG-ATTTTTTTTCACCGCGCCATAGCATTAT----ATCACGTGGG-TTCGCCA---TAGT-tatcaaaag
gi|14 : AG-TTATCTTC--AAAA--ATGTTACCTGAAGCAGGCATTGT--TCCgtat
gi|16 : ATAGAACGTTCTATTTTTCATTGAATAGAAAA
gi|2 : CGGAAAAGTCATATTAATTGCAACAAATACAAGGTTGTATTTGGCTCAGTTGTAAAGATGGGGTGGTGAAA--T--ATGAAGAAAAA--A-AAA------------TACCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTA--AAGAAAG-TAATCTGT--AAAA--ATGTTACCAGAAACAGACACTTT--TCCTTCA-ACCTT--------------CAGCATATG----GTCATGTGGA-TTCCCCACAGTAGT-AAGA-AATCCCAGCATTGTCTTTGCAGCTTCA-CAAGTTG----------GAACGTTCTATTTTTCATGGAATGGAAAAAtaga
gi|3 : ccaCGCAAAAGTCATATTAATTGCAACAAATACAAGGTTGTATTTGGCTCAGTTGTAAAGATGGGGTGATGAAA--T--ATGAAGAAAAA--A-ANN------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACTGAAGGTTCATATTTTTACAGAAATGGTGGTTGTCATTTTTTGGTCATTTTTTATGAAATGTTAATTTA--AAGAAAG-TAATCTGT--AAAA--ATGTTACCAGAAACGGGCACTTT--TCCTTCA-ACCTT--------------TAGCATATG----GTCATGTGGA-TTTGCCACAGTAGT-AAGA-AATCCCAGCATTGTCTTTGCAGCTTCA-CAAGT----------TAGAACGTTCTATTTTTCATGGAATGGAAAAA
gi|4 : GGTAAAGTCGTATTAACTGCAAAAAGTGTAATGTCGTATTTTGATCAGTTGAAAAGATGGGGTGTTGAAA--TTTACAAAAAAAAACAA-AAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTATATATGTAATAGCACTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTT--AAGAAAG-TAATCTGCAAAAAA--ATGTTACCAGAAACAGGGACATT--TCCATTG-ACTTT--------------TA-CATAAG----GTCACGTAGA-CTCGCCACCGTAGTAAAAA-AATTATAGCATCGTCTGTGTAGCTTCA-AAAGATGG
gi|5 : atGGCAAAGCCGTATTTATTGCAAAACAT-C---GTCGTATTTTATTCAGTTGAAAAGATGGGGTGGTGAAA--TTTGCCAAAACAAATGA-TNN------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCGAAGATTTTT-TTTTTACAGGGACGA-----GTTCTTTTTTTGTGATTTTTCATGAAATGTAAATTTT--AAGAAAG-TTATTTGC--AAAA--ATGTTACCAGAAACGGTCACTTT--TCCTTCG-ACTTT--------------TAGCATA----------------------------AGT-AAAA-A--TGTAGCATTGTCTTTGCAGCTTCA-GAAGTTGGTTCAAAATAGAACGTTTTATTTTTCATGGAATGG
gi|6 : ccatAGAAAG-TAATCTGC--GAAA--ATGTCACCAGAAACAGGCACTTT--TCCCTCG-ACTTT--------------AAGCATAAG----GTCACGTAGA-TTCGCCACCGTAGT-AAAACAATTGTAGCAGTGTCTTTGTAGTTTCA-GAAGTTGGTTTAAAAGAGAATGTTCTATATTTCATGGAATGGTAA
gi|7 : tt--AAGAAAG-TAATCTGC--AAAA--ATGTTACCAGAAATGGGCACTTT--TGCTTTG-ACTTT--------------TAGCCTAAG----GTCATGTGGA-TTCGTCACCGTAGT-AAAAGGATTGTAGCATAGTCTTTGCAGCTTCA-GAAGTTGGTTCAAAATAGAACGTTCTATTTTTCATAGAATGAAAAAttg
gi|8 : cAGAAAG-TAATCTGC--GAAA--ATATTACCAGAAACGGACACTTT--TCCGTTG-ACTTT--------------TAGCATAAG----GTCACGTGGA-TTCGCCACTGTAGT-AAAACAATTGAAGCAGTGTCTTTGCAGTTTCA-GAAGTTGGTTCAAAATAGAACGTTCTATTTTACATAGATTGGAAAAta
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): GAAATTTATAAAAATTTAATAAACACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
Unaligned ( gi|15 ): TCAGAATGACAACGAACGGAACTATCTTAAACATACATC
Unaligned ( gi|17 ): CACCCCATAACATAAAGTCACATGGGTTCACCAC