lowQualScore : 11111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 3333333333333333 1 11111 2222222 22222222222 2222 222222222222222222 1111111 111111 1 1 1 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 555555555555555555555
lowQualScore : 7 8 66 3 0000000000000000 66 66 1 888 77 6 11111 777 0 2222222 0 00000000000 0 4 5 4 3 0 1 8 66 4 9999 444444444444444444 7 7777 6666666 444444 9 0 0 1 3 6 0 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 2 7 3 99 33 2 2 1 4 7 5555 111111111111111111111 1 7 77 2 3 6
lowQualScore : . . .. . ................ .. .. . ... .. . ..... ... . ....... . ........... . . . . . . . . .. . .... .................. . .... ....... ...... . . . . . . . ..................................................................................................................... . . . . .. .. . . . . . .... ..................... . . .. . . .
lowQualScore : 1 1 99 2 2222222222222222 99 44 4 888 44 8 11111 666 8 7777777 9 00000000000 9 6 3 0 2 9 9 9 99 2 6666 999999999999999999 0 7777 3333333 555555 8 8 2 4 0 0 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 2 3 3 22 77 9 7 1 3 8 7777 888888888888888888888 2 4 77 5 1 4
consensus : TTAAAGAGGCATCACCTATAAGTCCGATATTT--TTAGGATAA--A--AATA-TTTA--A-CACT---GATTATTNAAATGCTATCATATAAATAAAGCTATTTTATGAACTTT-----TTGTTCA-GAAACATGTG--TTCTTTTCTGCTTCTG-----------TAATGCGTGTTTTACAGTCAGAAT-GTGAAGTGTTGTTGT-TGTCGATTAAATCGCGTCCCGCTC-TAAATGC-TACAACAGCAAC--AACTATCCTAAGCTCTAAATGCTAC--AACAGCAACAACTATCCTAAATCCGATAATTCCCGAGCGACAAT-AACAAATCTTTNAGTTTCCCGTTTCAATGGAAGGCATGCATTCAGCGTTTTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGT-GTT-GTAGAAAA-TCGCACCG--ATTTCTTCA-AGTTACATGGGTTTCTTTCAGA----CTANG-----T---AC-A---G--TTGGATCATTTCGTGGACATAAAATGT-ATAGGCGA-GGCCTCTTTAAAT
Reference ( gi|1 ) : TTAAAGAGGCATCACCTACACGTCCGATATTT--TTAGGGTAA--A--AATA-GTTA--A-CACT---GATTATTTAAATGCTATCATATGAATAAAGCTATTTTATGAACTTT-----TTGTTCA-GAAACATGCG--TTCTTTTCTGCTTCTGTAATAG-TCTATAATGCGTGTTTTACAATCAGAAT-GTGAAGTGTTGTTGT-TGTCGATTAAATTGCGTCCCG-TT-TAAATGC-TACAACAGCAAC--AACTATCATAAGCTCTAAATGCTAC--AACAGCAACAACTATCATAAATCCGATAATTCCCGAGCAAC-AT-AACAAATCTTACAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATATGT-GCT-GTAGAAAA-TCGCACCG--ATTTTTTCA-AGTTACATGGGTATCTTCCAGA----CTAAG-----T---AC-T---T--TTGAATCATTTCGTGGACATAAAATGT-GTAGGCAA-GGCTTCTTTAAAT
gi|4 : TTAAAGAGGCATCATCTCTAAGTCTGATAGTT--TTAGAATAA--A--A-TA-TTTA--A-CACT---GATTATTTAAATGCTACCATATAAATAAAACTATTTTATGAACTTT-----TTGTTCT-GAAAAATGTGTATTTTTTTCTGCTTCTG-----------TAATGCATGTTTTACAGTTAGAAT-GTG--GTGTTGTTGT-TGTCGATTAAATCGTGTCCCGCTC-TAAATAC-AACAACAACATCCTAAATACGATAATTCCTGAGTG--AC--AATA
gi|2 : tTTAAAGAGGCATT--TTAAA-GTTCAATATTT--TTAGGATAA--A--A-TA-TTTA--A-CACT---GATTATTTAAGTGCTTTAATATAAATAAAGCTATTTTATGAACTTT-----TTGTTCA-GAAATATGTC--TTCTTTACTGCTTCTG-----------TAATGCATGTTTTACAGTCAGAAT-GTGAAGTATAGTTGT-TGTCGATTAAATCGCATCTCACTC-TAAATGC-T------GCAAC--AACTATCCTAAA-TCCAATTATTTCCGAATGGCAATAACatacattttcgaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacacaccaattgtttcaagttacatgggtttctttcagtggacataaaatgtataggggaggcctcttta
gi|8 : TTAAAGAAGCATTACATATAAGTCCGATATTT--T-AGGATAT--A--A-TA-TTTA--A-CAAT---GATTATTTAAATGCTATCATATAAGTAAAGCTAGTTTATGAACATT-----TTGTTCA-GAAACATGTG--TTCTTCTCTGCTTC-----TAGATCTGTAATGCGTGTTTTACAGTCAGAAT-GGGAAGTGTTG-TG---GTCGAATAAATAGCGTCCCGCTC-TAAATCC-TAatttcttcggattttgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgacacatgttgttgtagaaaatcacattgatttcttcaagttgcatgggtttcattcagactaggtcaagttgggtcatttcctggacataaaatatacaggcgagctctctttaaa
gi|3 : TTAAAGAGGCATCACCTGTAAGTCCGATATTT--TTAGA-TAA--A--AATA-TTTA--A-CACT---GATTATTTAAATGCTAACATTTTAAAAAAGCTATTTCATGAACTTT-----TTGTTC-----------------TTTTCTGTTTTTGTAA---------AA--CGTGTTTTATAGCCGGA--------------TTGT-TGTTGAT--------GTC--G-AT-TAAAT--------------C----CTGTCCT--GCTATAAATGCTAC--AACA---ACAACTATCCTAAATCCGATAATTCCAGAGTGAC-ATAAACAAATCTT-CAGaatccgataattcccgagcgacaa
gi|11 : TAAAGACCCATCACCTATAAGTCCGATATTT--TTAGTTTAA--C--C-TA-TTAA--A-CACT---GATTATTAAAATGCTATAATATCAAAAAAATT-TTTTAAGAACTTT-----CTGTTCA-GAAACGTGCG--TTCTTTTCTGCTGCGG-----------TAATGTGTGTTTTACAGTCCGAAT-GTGAAGTGTTATAGT-TGTCgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtagcacctgtctgatttcttcaagttacatgggtttctttcagactaggtacagttggatcatttagtagatataaatgcacaggcgaggcgtctttaaat
gi|10 : TAAGAAGACATCACCTATAAATCTGATTTTT--TTAGGAT-------AATATGTTA--AGAATT---GACTATTATGATACAATCTTATAAATAATACTTTTTGATCAACTGT-----TTG-CCATGAAAC-----------TCACCG----TG----AA-TCGGTGATATG-GATTTGCGATAAATAA-GTGAAATGGTGTTGTATAT--ATT--ATAGCGACCCG-TTATAAA
gi|7 : GATGTATCATCTATAAGTCTGATATTT--T-AG---AA--A--AA-A-GTTATAA-TA-T---GATTATTATAATGTAATCCTGT-AATAAAGATATTTCATGAACTTG-----TTATTTA----ACATGTC--TT-TTTTCTGTTTTTCTAATA---------TG---ACTTTGCAGTCAGAAT-GTAAAGTG
gi|9 : aaccaaaattcagtctttatatactgccaatcaatattcatCATCACCTATAACTCCCA-GTTTCATTAAAATAATGATTAATC-ATTA--A--ACTAATGATTATT---ATATTTCTGTAT--ATAAAACTATTTTGTGAACTTTATATGTTATT----AAACATGT-------------CTTGTGT--------TATGATATG------ACGGTCA-AATGGCGAAATGTCA-TGTCTGTCTATTTAATTGCACCCCG-TTATAAA-GCATACACCAaggtgtccccgtcttcttactgttactttatagtgctctattctgaagagtacaacagcaaccattcaaactagtctgatacttctcttctgaatgc
gi|5 : tttacgataCTATTTTATGAACTTT-----TTGTTCA-GAAACATGTG--TTCTTTTCTGTTTCTG-----------TAATGCATGTTTTA----CAGAAT-ATG--GTGTGGTTGT-TTTCGATTAATTTGCGTCCCGCTC-TAAATGC-TACAACatagacat
gi|6 : CAGAAG-GTGAAGTATTGTTAT-TGACTACTTTATTGCACCCTGATC-TAAATTC-AACAACAGCAA---AACtatcctgaatccgataattcctgagcgacaataataaatctttggattttcggtaatcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtaacacatgttgttgtagaaaattgcacctatttcttcaagttatatgggtttctttccgactaa
gi|4 : GCTCTAAAT--------ACAACAACAAC-ATCCTAAATACGATAATTCCTGAGTGACAAT-AATACATTTTaaatttatccgatcattctctattataacaaatctttgaatttcccgtttcaatggaaggcatgcattcagcgttttagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgttgtagaaacttatttatcacagttatatgattttctttccgactacgtgcaattggatcatgtcttagatatgcctttataaggggggccactttaaac
gi|5 : tttaaagaggcatcatctctaagtctgatagttttagaataaaatatttaacactgattatttaaatgctaccatataaataaaactattttatgaactttttgttctgaaaaatgtgtatttttttctgcttctgtaatgcatgttttacagttagaatgtggtgttgttgttgtcgattaaatcgtgtcccGCTCTAAATGCTAC--AAC---------TATCCTGAATCCGATAATTCCTGAGCGACAAT-AATAAATCTTcgaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacacaccaattgtttcaagttacatgggtttctttcagtggacataaaatgtataggggaggcctcttta
gi|6 : ctattttatgaactttttgttcagaaacatgtgttcttttctgtttctgtaatgcatgttttacagaatatggtgtggttgttttcgattaatttgcgtcccTCTAAATTCAAC--AACAGCAA-AACAA--ATTTATCCGATCATTCTC---TATT-AT-AACAAATCTTTGAATTTCCCGTTTCAATGGAAGGCATGCATTCAGCGTTTTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT-GTT-GTAGAAAC-TTA---------TTTATCACAGTTATATGATTTTCTTTCCGA----CTACG-----T---GC-A---A--TTGGATCATGTCTTAGATAT-GCCTTT-ATAAGGGG-GGCCACTTTAAAtggattttcggtaatcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtaacacatgttgttgtagaaaattgcacctatttcttcaagttatatgggtttctttccgactaa
gi|8 : cagaaggtgaagtattgttattgactactttattgcaccctgaATCCTAAATCCGATAATTCCCGAGCGAC-Ac
gi|2 : ttaaagaagcattacatataagtccgatattttaggatataatatttaacaatgattatttaaatgctatcatataagtaaagctagtttatgaacattttgttcagaaacatgtgttcttctctgcttctagatctgtaatgcgtgttttacagtcagaatgggaagtgttgtggtcgaataaatagcgtcccgctctaaACATGTTGTT-GTAGAAAA-TCACATTG--ATTTCTTCA-AGTTGCATGGGTTTCATTCAGA----CTAGG-----T---CA-A---G--TTGGGTCATTTCCTGGACATAAAATAT-ACAGGCGA-GCTCTCTTTAAAa
gi|5 : ttaaagaggcattttaaagttcaatatttttaggataaaatatttaacactgattatttaagtgctttaatataaataaagctattttatgaactttttgttcagaaatatgtcttctttactgcttctgtaatgcatgttttacagtcagaatgtgaagtatagttgttgtcgattaaatcgcatctcactctaaatgctgcaacaactatcctaaatccaattatttccgaatggcaataacatttcttcggattttgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgacACATGTTGTT-GTAGAAAA-TTGCACCT--ATTTCTTCA-AGTTATATGGGTTTCTTTCCGA----CTAA
gi|21 : ctattttatgaactttttgttcagaaacatgtgttcttttctgtttctgtaatgcatgttttacagaatatggtgtggttgttttcgattaatttgcgtcccgctctaaatgctacaactatcctgaatccgataattcctgagcgacaataataaatctttggattttcggtaatcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtaacTAT-T-GCT-GTAGAAAGTTCGCACTG--A-TTTCCCA-AGCTGCATAGTTTTGTTTCAGA----GTA
gi|12 : caagTGT-GCT-GCAGAAAA-CCACTCTG--ATTTTT----AGTTCCATGATTGTCTTACAGATATTCCAGGCTGCCT---ACAG---T--CTGA-TAATTTCATAGACAT-AAATGT-ATAAGTGA-GGCCACTTTAAcgaatagtcgg
gi|14 : caagtgtT-GTT-GTAGAAAG-TCGCACCA--ATTTCTGCA-AGTTACATAGGTTTCGTTCAGA----CTATG-----T---GC-A---G--TTGGATCATTTTGTTGACATCAAATGT-ATAGGCAA-GGCCTC-TTAAAtaca
gi|19 : acgtgtT-GTT-GTATAAAA-TCGCATCG--AGTTCTTCT-TATTACATG--TAC---------------AG-----T---A-----------GGATCATTTCGTGGACATAAAATGT-ATAGGCGA-GGTCTCTTTAAAgat
gi|18 : acacgtgtT-GTT-GTAGAATA-TCGCATCG--GTATCTCCA-AGTTACATGGGTTTCTTACTGA----C--AG-------------------TTGGATCCTTTCGTGTACATAAAACGC-ATAGa
gi|13 : cgtgtT-GTT-GTAGAAAA-TTACACCG--TTTTTTTCC-TGCGACATGGGTTTCTTTGTGA----CTATG-----TGTAGC-TGGGTAGTTGGATAATTCCGTGGACATAAAACGTAGT-GGTGA-GTCATCTTTAAAttgggtctcctgataa
gi|15 : tgttT-GCT-GCAGAAA--TCAAACTG--ATATCTTCA-ATTTACATGCATATCTGTCAGA----CTATG-----T---AT-G---G--TTGAATAATTTTGCTGACATTAA
gi|16 : tgtT-GCTTGTGGAAA--TTGCACAGGAATTTTT--A-AGTTGCACGATT-TCTTTCAGA----CTACA-----T---GC-A---G--TTGACTCAAATCATGGGCAT-AAATAT-ATAGGCGA-TGTCTCTTCAAAtccatgcatgaggtccttttaggt
gi|17 : gtCT-GCAGAAAT-AAGCACTG--ATTTCCAAA-AGTGTTATGATTTTCTGTCAGA----CTAAA-----T---AA-A---G--TTGAAACATTTTATAGACATACATTA--ATAGGTAAGGGCT--TTTAAATa
gi|4 : aCACACCA--ATTGTTTCA-AGTTACATGGGTTTCTTTCA------------------------------------------GTGGACATAAAATGT-ATAGGGGA-GGCCTCTTTAa
gi|20 : tttaaagaggcatcatctctaagtctgatagttttagaataaaatatttaacactgattatttaaatgctaccatataaataaaactattttatgaactttttgttctgaaaaatgtgtatttttttctgcttctgtaatgcatgttttacagttagaatgtggtgttgttgttgtcgattaaatcgtgtcccgctctaaatacaacaacaacatcctaaatacgataattcctgagtgacaataatacattttcgaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataaACCT--ATATCTTCA-AGTTACATAGGTTTCTTTCAGA----CTAGG-----T---AC-A---G--TTGCATCATTTCGTGGACATAAAATGT-ACAGGAAA-TGCCTCTTTAA
gi|3 : CTG--ATTTCTTCA-AGTTACATGGGTTTCTTTCAGA----CTAGG-----T---AC-A---G--TTGGATCATTTAGTAGATAT-AAATGC-ACAGGCGA-GGCGTCTTTAAATc
gi|23 : ttaaagaggcatcacctgtaagtccgatatttttagataaaaatatttaacactgattatttaaatgctaacattttaaaaaagctatttcatgaactttttgttcttttctgtttttgtaaaacgtgttttatagccggattgttgttgatgtcgattaaatcctgtcctgctataaatgctacaacaacaactatcctaaatccgataattccagagtgacataaacaaatcttcaggttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtagcacctgt--TTGAATCATTTCGTGGACATAAAATGA-ATAAGCGA-GCCCTCTTTAAA
gi|22 : acgg--TTGAATCATTTCGTGAACATAAAATGT-ATAGGCGA-GACCTTCTTAAGT
Alignments
lowQualScore : 1111111 11111 111111 1111111111 2222222222222 11 11111111111 2222222 7777777777777777777777777777777777777777777777777777777777777777777777777 1 1111111111111111
lowQualScore : 66 3 6666666 4 4 4 4 2 5 2 3 00000 77 1 888 4 111111 7777777777 3 3 2 0000000000000 7 6 3 2 44 4 99 0 11 55 77777777777 3 3 1 1111111 11 1 3333333333333333333333333333333333333333333333333333333333333333333333333 4 77 33 2 2 1 5555 3333333333333333 6 444 0
lowQualScore : .. . ....... . . . . . . . . ..... .. . ... . ...... .......... . . . ............. . . . . .. . .. . .. .. ........... . . . ....... .. . ......................................................................... . .. .. . . . .... ................ . ... .
lowQualScore : 11 7 7777777 4 4 4 4 9 3 0 7 00000 33 6 000 0 555555 5555555555 2 6 1 0000000000000 3 0 9 3 77 4 22 8 00 77 00000000000 0 5 4 7777777 33 8 0000000000000000000000000000000000000000000000000000000000000000000000000 5 88 44 1 5 9 3333 7777777777777777 4 444 2
consensus : TTAAAGAGGCATCACCTATAAGTCCGATATTT--TTAGGATAA--A--AAT-AT-TTAA-C-ACTGATTATTTAAATGCTATCATATAAATAAAGCTATTTTATGAACTTT-----TTGTTCA-GAAACATGTG--TTCTTTTC-TGCT------TCTG----------TAATGCGTGTTTTACAGTCAGAAT-GTGAAGTG-------------TTGTTGT-TGTCGATTAAATCGCGTCCCGCTCTAAATGC-TACAACAGC--AACAA--CTATCCTAAGCTCTAAATGCTAC--AACGGCAACAACTATCCTAAATCCGATAATTCCCGAGCGACAATAACAAATCT-------TCGAATTTCCNGTTTCAATGGAAGGCATGCATTCAGCGTTTTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGCACGTGT-GTTGTAGAAAA-TCGCACCG--ATTTCTTCA-AGTTACATGGGTTTCTTTCAGA----CTANG-----T--------ACAGTTGGATCATTTCGTGGACATAAA---ATGTATAGGCGAGGCCTCTTTAAAT
Reference ( family-138 ) : TTAAAGAGGCATCACCTATAAGTCCGATATTT--TTAGGATAA--A--AAT-AT-TTAA-C-ACTGATTATTNAAATGCTATCATATAAATAAAGCTATTTTATGAACTTT-----TTGTTCA-GAAACATGTG--TTCTTTTC-TGCT------TCTG----------TAATGCGTGTTTTACAGTCAGAAT-GTGAAGTG-------------TTGTTGT-TGTCGATTAAATCGCGTCCCGCTCTAAATGC-TACAACAGC--AACAA--CTATCCTAAGCTCTAAATGCTAC--AACAGCAACAACTATCCTAAATCCGATAATTCCCGAGCGACAATAACAAATCT-------TTNAGTTTCCCGTTTCAATGGAAGGCATGCATTCAGCGTTTTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGT-GTTGTAGAAAA-TCGCACCG--ATTTCTTCA-AGTTACATGGGTTTCTTTCAGA----CTANG-----T--------ACAGTTGGATCATTTCGTGGACATAAA---ATGTATAGGCGAGGCCTCTTTAAAT
gi|1 : TTAAAGAGGCATCACCTACACGTCCGATATTT--TTAGGGTAA--A--AAT-AG-TTAA-C-ACTGATTATTTAAATGCTATCATATGAATAAAGCTATTTTATGAACTTT-----TTGTTCA-GAAACATGCG--TTCTTTTC-TGCT------TCTGTAATAGTCTATAATGCGTGTTTTACAATCAGAAT-GTGAAGTG-------------TTGTTGT-TGTCGATTAAATTGCGTCCCG-TTTAAATGC-TACAACAGC--AACAA--CTATCATAAGCTCTAAATGCTAC--AACAGCAACAACTATCATAAATCCGATAATTCCCGAGCAAC-ATAACAAATCT-------TACAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATATGT-GCTGTAGAAAA-TCGCACCG--ATTTTTTCA-AGTTACATGGGTATCTTCCAGA----CTAAG-----T--------ACTTTTGAATCATTTCGTGGACATAAA---ATGTGTAGGCAAGGCTTCTTTAAAT
gi|10 : TAAGAAGACATCACCTATAAATCTGATTTTT--TTAGGAT-------AAT-ATGTTAAGA-ATTGACTATTATGATACAATCTTATAAATAATACTTTTTGATCAACTGT-----TTG-CCATGAAA----------CTCACCGTGAA------TCGG----------TGATATG-GATTTGCGATAAATAA-GTGAAATG-------------GTGTTGTATAT--ATT--ATAGCGACCCGTTATAAA
gi|11 : TAAAGACCCATCACCTATAAGTCCGATATTT--TTAGTTTAA--C--C-T-AT-TAAA-C-ACTGATTATTAAAATGCTATAATATCAAAAAAATT-TTTTAAGAACTTT-----CTGTTCA-GAAACGTGCG--TTCTTTTC-TGCT------GCGG----------TAATGTGTGTTTTACAGTCCGAAT-GTGAAGTG-------------TTATAGT-TGTC
gi|12 : TGT-GCTGCAGAAAA-CCACTCTG--ATTTTT----AGTTCCATGATTGTCTTACAGATATTCCAGGCTGCCT--------ACAGTCTGATAATTTCATAGACAT-AA---ATGTATAAGTGAGGCCACTTTAA
gi|13 : caagtgtT-GTTGTAGAAAA-TTACACCG--TTTTTTTCC-TGCGACATGGGTTTCTTTGTGA----CTATG-----TGTAGCTGGGTAGTTGGATAATTCCGTGGACATAAA---ACGTAGTGGTGAGTCATCTTTAAAtaca
gi|14 : tgttACGTGTTGTTGTAGAAAG-TCGCACCA--ATTTCTGCA-AGTTACATAGGTTTCGTTCAGA----CTATG-----T--------GCAGTTGGATCATTTTGTTGACATCAA---ATGTATAGGCAAGGCCTC-TTAAA
gi|15 : T-GCTGCAGAAA--TCAAACTG--ATATCTTCA-ATTTACATGCATATCTGTCAGA----CTATG-----T--------ATGGTTGAATAATTTTGCTGACATTAATCCATGCAT----GAGGTCCTTTTAgat
gi|16 : tgtTTGTGGAAA--TTGCACAGGAATTTTT--A-AGTTGCACGA-TTTCTTTCAGA----CTACA-----T--------GCAGTTGACTCAAATCATGGGCAT-AA---ATATATAGGCGATGTCTCTTCAAAggt
gi|17 : gttgcTGCAGAAAT-AAGCACTG--ATTTCCAAA-AGTGTTATGATTTTCTGTCAGA----CTAAA-----T--------AAAGTTGAAACATTTTATAGACATACA---TTA-ATAGGTAAGGGCT-TTTAAATa
gi|18 : acT-GTTGTAGAATA-TCGCATCG--GTATCTCCA-AGTTACATGGGTTTCTT----A----CTG----------------ACAGTTGGATCCTTTCGTGTACATAAA---ACGCATAGTTG-GGTCTCCTa
gi|19 : cgtgtACGTGTTGTTGTATAAAA-TCGCATCG--AGTTCTTCT-TATTACATG---------------------------T--------ACAGTAGGATCATTTCGTGGACATAAA---ATGTATAGGCGAGGTCTCTTTAAAgataa
gi|2 : acTTAAAGAGGCATT--TTA-AAGTTCAATATTT--TTAGGATAA--A--A-T-AT-TTAA-C-ACTGATTATTTAAGTGCTTTAATATAAATAAAGCTATTTTATGAACTTT-----TTGTTCA-GAAATATGTC--TTCTTTAC-TGCT------TCTG----------TAATGCATGTTTTACAGTCAGAAT-GTGAAGTA-------------TAGTTGT-TGTCGATTAAATCGCATCTCACTCTAAATGC-T------GC--AACAA--CTATCCTAAA-TCCAATTATTTCCGAATGGCAATAACa
gi|2 : CTCTAAATGCT--------GCAACAACTATCCTAAATCCAATTATTTCCGAATGGCAATAACATTTCTTCGGATTTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACACATGTTGTTGTAGAAAA-TCACATTG--ATTTCTTCA-AGTTGCATGGGTTTCATTCAGA----CTAGG-----T--------CAAGTTGGGTCATTTCCTGGACATAAA---ATATACAGGCGAGCTCTCTTTAAAatttcttcggattttgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgacacatgttgttgtagaaaatcacattgatttcttcaagttgcatgggtttcattcagactaggtcaagttgggtcatttcctggacataaaatatacaggcgagctctctttaaa
gi|20 : ttaaagaggcattttaaagttcaatatttttaggataaaatatttaacactgattatttaagtgctttaatataaataaagctattttatgaactttttgttcagaaatatgtcttctttactgcttctgtaatgcatgttttacagtcagaatgtgaagtatagttgttgtcgattaaatcgcatctcaACCT--ATATCTTCA-AGTTACATAGGTTTCTTTCAGA----CTAGG-----T--------ACAGTTGCATCATTTCGTGGACATAAA---ATGTACAGGAAATGCCTCTTTAA
gi|21 : T-GCTGTAGAAAGTTCGCACTG--ATTTC-CCA-AGCTGCATAGTTTTGTTTCAGA----GTACG-----A--------ATAGTCGGc
gi|22 : caagtat--------ACAGTTGAATCATTTCGTGAACATAAA---ATGTATAGGCGAGACCTTCTTAAGT
gi|23 : --------ACGGTTGAATCATTTCGTGGACATAAA---ATGAATAAGCGAGCCCTCTTTAAA
gi|3 : TTAAAGAGGCATCACCTGTAAGTCCGATATTT--TTAG-ATAA--A--AAT-AT-TTAA-C-ACTGATTATTTAAATGCTAACATTTTAAAAAAGCTATTTCATGAACTTT-----T---------------TG--TTCTTTTC-TGTT------TTTG----------TAAAACGTGTTTTATAGCC-GGAT-------TG-------------TTGTTGA-TGTCGATTAAATCCTGTCCTGCTATAAATGC-TACAA---C--AACAA--CTATCCTAA
gi|3 : CAACAACTATCCTAAATCCGATAATTCCAGAGTGACATAAACAAATCT-------TCAGGTTatccgataattccagagtgacataaacaaatcttcaggttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtagcacctgtctgatttcttcaagttacatgggtttctttcagactaggtacagttggatcatttagtagatataaatgcacaggcgaggcgtctttaaat
gi|3 : ttaaagaggcatcacctgtaagtccgatatttttagataaaaatatttaacactgattatttaaatgctaacattttaaaaaagctatttcatgaactttttgttcttttctgtttttgtaaaacgtgttttatagccggattgttgttgatgtcgattaaatcctgtcctgctataaatgctacaaCTG--ATTTCTTCA-AGTTACATGGGTTTCTTTCAGA----CTAGG-----T--------ACAGTTGGATCATTTAGTAGATAT-AA---ATGCACAGGCGAGGCGTCTTTAAATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtagcacctgtctgatttcttcaagttacatgggtttctttcagactaggtacagttggatcatttagtagatataaatgcacaggcgaggcgtctttaaat
gi|4 : ttaaagaggcatcacctgtaagtccgatatttttagataaaaatatttaacactgattatttaaatgctaacattttaaaaaagctatttcatgaactttttgttcttttctgtttttgtaaaacgtgttttatagccggattgttgttgatgtcgattaaatcctgtcctgctataaatgctacaacaacaactatcctaaatccgataattccagagtgacataaacaaatcttcaggttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtagcacctgtTTAAAGAGGCATCATCTCTAAGTCTGATAGTT--TTAGAATAA--A--A-T-AT-TTAA-C-ACTGATTATTTAAATGCTACCATATAAATAAAACTATTTTATGAACTTT-----TTGTTCT-GAAAAATGTGTATTTTTTTC-TGCT------TCTG----------TAATGCATGTTTTACAGTTAGAAT-GTG--GTG-------------TTGTTGT-TGTCGATTAAATCGTGTCCCGCTCTAAA----TACAACAAC--AAC------ATCCTAA
gi|4 : tGCTCTAAAT--------ACAACAACAAC-ATCCTAAATACGATAATTCCTGAGTGACAATAATACATTT-------TCGAATTatacgataattcctgagtgacaataatacattttcgaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacacaccaattgtttcaagttacatgggtttctttcagtggacataaaatgtataggggaggcctcttta
gi|4 : tttaaagaggcatcatctctaagtctgatagttttagaataaaatatttaacactgattatttaaatgctaccatataaataaaactattttatgaactttttgttctgaaaaatgtgtatttttttctgcttctgtaatgcatgttttacagttagaatgtggtgttgttgttgtcgattaaatcgtgtcccCACACCA--ATTGTTTCA-AGTTACATGGGTTTCTTTCAG-----------------------------------------TGGACATAAA---ATGTATAGGGGAGGCCTCTTTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacacaccaattgtttcaagttacatgggtttctttcagtggacataaaatgtataggggaggcctcttta
gi|5 : tttaaagaggcatcatctctaagtctgatagttttagaataaaatatttaacactgattatttaaatgctaccatataaataaaactattttatgaactttttgttctgaaaaatgtgtatttttttctgcttctgtaatgcatgttttacagttagaatgtggtgttgttgttgtcgattaaatcgtgtcccgctctaaatacaacaacaacatcctaaatacgataattcctgagtgacaataatacattttcgaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataaCTATTTTATGAACTTT-----TTGTTCA-GAAACATGTG--TTCTTTTC-TGTT------TCTG----------TAATGCATGTTTTA----CAGAAT-ATG--GTG-------------TGGTTGT-TTTCGATTAATTTGCGTCCCGCTCTAAATGC-TACAAC
gi|5 : GCTCTAAATGCTAC--AA---------CTATCCTGAATCCGATAATTCCTGAGCGACAATAATAAATCT-------TTGGATTTTCGGTtatcctgaatccgataattcctgagcgacaataataaatctttggattttcggtaatcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtaacacatgttgttgtagaaaattgcacctatttcttcaagttatatgggtttctttccgactaa
gi|5 : ctattttatgaactttttgttcagaaacatgtgttcttttctgtttctgtaatgcatgttttacagaatatggtgtggttgttttcgattaatttgcgtcccACATGTTGTTGTAGAAAA-TTGCACCT--ATTTCTTCA-AGTTATATGGGTTTCTTTCCGA----CTAaatcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtaacacatgttgttgtagaaaattgcacctatttcttcaagttatatgggtttctttccgactaa
gi|6 : ctattttatgaactttttgttcagaaacatgtgttcttttctgtttctgtaatgcatgttttacagaatatggtgtggttgttttcgattaatttgcgtcccgctctaaatgctacaactatcctgaatccgataattcctgagcgacaataataaatctttggattttcggtaatcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtaacCAGAAG-GTGAAGTA-------------TTGTTAT-TGACTACTTTATTGCACCCTGATCTAAATTC-AACAACAGCAAAACAAATTTATCCa
gi|6 : ACCCTGA--TCTAAATTCAAC--AACAGCAA-AACAAATTTA--TCCGATCATTCTCTATT----ATAACAAATCT-------TTGAATTTCCCGTTTCAATGGAAGGCATGCATTCAGCGTTTTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT-GTTGTAGAA-------ACTT--ATTTA-TCACAGTTATATGATTTTCTTTCCGA----CTACG-----T--------GCAATTGGATCATGTCTTAGATAT-GC---CTTTATAAGGGGGGCCACTTTAAAgatcattctctattataacaaatctttgaatttcccgtttcaatggaaggcatgcattcagcgttttagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgttgtagaaacttatttatcacagttatatgattttctttccgactacgtgcaattggatcatgtcttagatatgcctttataaggggggccactttaaac
gi|7 : cagaaggtgaagtattgttattgactactttattgcGATGTATCATCTATAAGTCTGATA-TT--TTAGAA-AA--A--AGT--T-ATAA-T-A-TGATTATTATAATGTAATCCTGT-AATAAAGATATTTCATGAACTTG-----TTATTT----AACATGTC--TT-TTTTC-TGTT------TTTC----------TAATATG-ACTTTGCAGTCAGAAT-GTAAAGTGAGGTGTCCCCGTCTTCTTAC-TGTTACTT-TATAGTGCTCTATTCTGAAGAG-TACAACAGC--AACc
gi|8 : aaccaaaattcagtctttatatactgccaatcaatattcatTTAAAGAAGCATTACATATAAGTCCGATATTT--T-AGGATAT--A--A-T-AT-TTAA-C-AATGATTATTTAAATGCTATCATATAAGTAAAGCTAGTTTATGAACATT-----TTGTTCA-GAAACATGTG--TTCTTCTC-TGCTTCTAGATCTG----------TAATGCGTGTTTTACAGTCAGAAT-GGGAAGTG-------------TTG-TG---GTCGAATAAATAGCGTCCCGCTCTAAATCC-TAcattcaaactagtctgatacttctcttctgaatgc
gi|8 : ATCCTAAATCCGATAATTCCCGAGCGACAAaatccgataattcccgagcgacaa
gi|9 : ttaaagaagcattacatataagtccgatattttaggatataatatttaacaatgattatttaaatgctatcatataagtaaagctagtttatgaacattttgttcagaaacatgtgttcttctctgcttctagatctgtaatgcgtgttttacagtcagaatgggaagtgttgtggtcgaataaatagcgtcccgctctaaCATCACCTATAACTCCCA-GTTTCATTAAAATAATGATTAATCAT-TAAA-CTAATGATTATT---ATATT-TC-TGTATATAAAACTATTTTGTGAACTTTATATGTTATT----AAACATGT--------------CT------TGTG----------TTATG---ATATGACGGTCA-AATGGCGAAATG-------------TCA-TGTCTGTCTATTTAATTGCACCCCGTTATAAA-GCATACACCA
Alignments
lowQualScore : 1111111 11111 111111 1111111111 2222222222222 11111111111 2222222 111 2222222222 666666666666666666666666666666666666666666666666666666666666666666666 1 1111111111111111
lowQualScore : 66 3 6666666 4 4 4 4 2 5 2 3 00000 77 1 888 4 111111 7777777777 3 3 2 0000000000000 7 6 3 2 44 4 1 2 77 99 66 77 55555555555 3 5 1 1111111 1 222 4444444444 999999999999999999999999999999999999999999999999999999999999999999999 0 3 4 77 33 2 2 1 5555 3333333333333333 6 444 0
lowQualScore : .. . ....... . . . . . . . . ..... .. . ... . ...... .......... . . . ............. . . . . .. . . . .. .. .. .. ........... . . . ....... . ... .......... ..................................................................... . . . .. .. . . . .... ................ . ... .
lowQualScore : 11 7 7777777 4 4 4 4 9 1 0 7 00000 33 6 000 0 555555 5555555555 2 6 1 0000000000000 3 0 9 3 77 4 9 5 99 22 77 99 99999999999 4 1 4 7777777 0 000 8888888888 000000000000000000000000000000000000000000000000000000000000000000000 8 6 5 88 44 1 5 9 3333 7777777777777777 4 444 2
consensus : TTAAAGAGGCATCACCTATAAGTCCGATATTT--TTAGGATAA--A--AAT-AT-TTAA-C-ACTGATTATTTAAATGCTATCATATAAATAAAGCTATTTTATGAACTTT-----TTGTTCA-GAAACATGTG--TTCTTTTC-TGCT------TCTG----------TAATGCGTGTTTTACAGTCAGAAT-GTGAAGTG-------------TTGTTGT-TGTCGATTAAATCGCGTCCCGCTCTAAATGC-TACAACAGC--AACAA--CTATCCTAAGCTC--TAAATGCTAC--AACGGCAACAACTATCCTAAATCCGATAATTCCCGAGCGACAATAACAAATCTTC-------GAATTTCCNGTTTCAATGGAAGGCATGCACTCAGCGTTTTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGACACGTG-T-GTTGTAGAAAA-TCGCACCG--ATTTCTTCA-AGTTACATGGGTTTCTTTCAGA----CTANG-----T--------ACAGTTGGATCATTTCGTGGACATAAA---ATGTATAGGCGAGGCCTCTTTAAAT
Reference ( family-138 ) : TTAAAGAGGCATCACCTATAAGTCCGATATTT--TTAGGATAA--A--AAT-AT-TTAA-C-ACTGATTATTTAAATGCTATCATATAAATAAAGCTATTTTATGAACTTT-----TTGTTCA-GAAACATGTG--TTCTTTTC-TGCT------TCTG----------TAATGCGTGTTTTACAGTCAGAAT-GTGAAGTG-------------TTGTTGT-TGTCGATTAAATCGCGTCCCGCTCTAAATGC-TACAACAGC--AACAA--CTATCCTAAGCTC--TAAATGCTAC--AACGGCAACAACTATCCTAAATCCGATAATTCCCGAGCGACAATAACAAATCTTC-------GAATTTCCNGTTTCAATGGAAGGCATGCATTCAGCGTTTTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGCACGTG-T-GTTGTAGAAAA-TCGCACCG--ATTTCTTCA-AGTTACATGGGTTTCTTTCAGA----CTANG-----T--------ACAGTTGGATCATTTCGTGGACATAAA---ATGTATAGGCGAGGCCTCTTTAAAT
gi|1 : TTAAAGAGGCATCACCTACACGTCCGATATTT--TTAGGGTAA--A--AAT-AG-TTAA-C-ACTGATTATTTAAATGCTATCATATGAATAAAGCTATTTTATGAACTTT-----TTGTTCA-GAAACATGCG--TTCTTTTC-TGCT------TCTGTAATAGTCTATAATGCGTGTTTTACAATCAGAAT-GTGAAGTG-------------TTGTTGT-TGTCGATTAAATTGCGTCCCG-TTTAAATGC-TACAACAGC--AACAA--CTATCATAAGCTC--TAAATGCTAC--AACAGCAACAACTATCATAAATCCGATAATTCCCGAGCAAC-ATAACAAATCTTA-------CAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATATG-T-GCTGTAGAAAA-TCGCACCG--ATTTTTTCA-AGTTACATGGGTATCTTCCAGA----CTAAG-----T--------ACTTTTGAATCATTTCGTGGACATAAA---ATGTGTAGGCAAGGCTTCTTTAAAT
gi|10 : TAAGAAGACATCACCTATAAATCTGATTTTT--TTAGGAT-------AAT-ATGTTAAGA-ATTGACTATTATGATACAATCTTATAAATAATACTTTTTGATCAACTGT-----TTG-CCATGAAA----------CTCACCGTGAA------TCGG----------TGATATG-GATTTGCGATAAATAA-GTGAAATG-------------GTGTTGTATAT--ATT--ATAGCGACCCGTTATAAA
gi|11 : TAAAGACCCATCACCTATAAGTCCGATATTT--TTAGTTTAA--C--C-T-AT-TAAA-C-ACTGATTATTAAAATGCTATAATATCAAAAAAATT-TTTTAAGAACTTT-----CTGTTCA-GAAACGTGCG--TTCTTTTC-TGCT------GCGG----------TAATGTGTGTTTTACAGTCCGAAT-GTGAAGTG-------------TTATAGT-TGTC
gi|12 : TG-T-GCTGCAGAAAA-CCACTCTG--ATTTTT----AGTTCCATGATTGTCTTACAGATATTCCAGGCTGCCT--------ACAGTCTGATAATTTCATAGACAT-AA---ATGTATAAGTGAGGCCACTTTAA
gi|13 : caagtgtGTT-T-GTTGTAGAAAA-TTACACCG--TTTTTTTCC-TGCGACATGGGTTTCTTTGTGA----CTATG-----TGTAGCTGGGTAGTTGGATAATTCCGTGGACATAAA---ACGTAGTGGTGAGTCATCTTTAAAtaca
gi|14 : tACGTG-TTGTTGTAGAAAG-TCGCACCA--ATTTCTGCA-AGTTACATAGGTTTCGTTCAGA----CTATG-----T--------GCAGTTGGATCATTTTGTTGACATCAA---ATGTATAGGCAAGGCCTC-TTAAA
gi|15 : -T-GCTGCAGAAA--TCAAACTG--ATATCTTCA-ATTTACATGCATATCTGTCAGA----CTATG-----T--------ATGGTTGAATAATTTTGCTGACATTAATCCATGCAT----GAGGTCCTTTTAgat
gi|16 : tgtTTGTGGAAA--TTGCACAGGAATTTTT--A-AGTTGCACGA-TTTCTTTCAGA----CTACA-----T--------GCAGTTGACTCAAATCATGGGCAT-AA---ATATATAGGCGATGTCTCTTCAAAggt
gi|17 : gttgcTGCAGAAAT-AAGCACTG--ATTTCCAAA-AGTGTTATGATTTTCTGTCAGA----CTAAA-----T--------AAAGTTGAAACATTTTATAGACATACA---TTA-ATAGGTAAGGGCT-TTTAAATa
gi|18 : acCGTG-TTGTTGTAGAATA-TCGCATCG--GTATCTCCA-AGTTACATGGGTTTCTT----A----CTG----------------ACAGTTGGATCCTTTCGTGTACATAAA---ACGCATAGTTG-GGTCTCCTa
gi|19 : CACGTG-TTGTTGTATAAAA-TCGCATCG--AGTTCTTCT-TATTACATG---------------------------T--------ACAGTAGGATCATTTCGTGGACATAAA---ATGTATAGGCGAGGTCTCTTTAAAgataa
gi|2 : aTTAAAGAGGCATT--TTA-AAGTTCAATATTT--TTAGGATAA--A--A-T-AT-TTAA-C-ACTGATTATTTAAGTGCTTTAATATAAATAAAGCTATTTTATGAACTTT-----TTGTTCA-GAAATATGTC--TTCTTTAC-TGCT------TCTG----------TAATGCATGTTTTACAGTCAGAAT-GTGAAGTA-------------TAGTTGT-TGTCGATTAAATCGCATCTCACTCTAAATGC-T------GC--AACAA--CTATCCTAAA-TC--CAATTATTTCCGAATGGCAATAACa
gi|2 : CTC--TAAATGCT--------GCAACAACTATCCTAAATCCAATTATTTCCGAATGGCAATAACATTTCTTCGGATTTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACACATG-TTGTTGTAGAAAA-TCACATTG--ATTTCTTCA-AGTTGCATGGGTTTCATTCAGA----CTAGG-----T--------CAAGTTGGGTCATTTCCTGGACATAAA---ATATACAGGCGAGCTCTCTTTAAAatttcttcggattttgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgacacatgttgttgtagaaaatcacattgatttcttcaagttgcatgggtttcattcagactaggtcaagttgggtcatttcctggacataaaatatacaggcgagctctctttaaa
gi|20 : ttaaagaggcattttaaagttcaatatttttaggataaaatatttaacactgattatttaagtgctttaatataaataaagctattttatgaactttttgttcagaaatatgtcttctttactgcttctgtaatgcatgttttacagtcagaatgtgaagtatagttgttgtcgattaaatcgcatctcaACCT--ATATCTTCA-AGTTACATAGGTTTCTTTCAGA----CTAGG-----T--------ACAGTTGCATCATTTCGTGGACATAAA---ATGTACAGGAAATGCCTCTTTAA
gi|21 : -T-GCTGTAGAAAGTTCGCACTG--ATTTC-CCA-AGCTGCATAGTTTTGTTTCAGA----GTACG-----A--------ATAGTCGGc
gi|22 : caagtat--------ACAGTTGAATCATTTCGTGAACATAAA---ATGTATAGGCGAGACCTTCTTAAGT
gi|23 : --------ACGGTTGAATCATTTCGTGGACATAAA---ATGAATAAGCGAGCCCTCTTTAAA
gi|3 : TTAAAGAGGCATCACCTGTAAGTCCGATATTT--TTAG-ATAA--A--AAT-AT-TTAA-C-ACTGATTATTTAAATGCTAACATTTTAAAAAAGCTATTTCATGAACTTT-----T---------------TG--TTCTTTTC-TGTT------TTTG----------TAAAACGTGTTTTATAGCC-GGAT-------TG-------------TTGTTGA-TGTCGATTAAATCCTGTCCTGCTATAAATGC-TACAA---C--AACAA--CTATCCTAA
gi|3 : CAACAACTATCCTAAATCCGATAATTCCAGAGTGACATAAACAAATCTTC-------atccgataattccagagtgacataaacaaatcttcaggttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtagcacctgtctgatttcttcaagttacatgggtttctttcagactaggtacagttggatcatttagtagatataaatgcacaggcgaggcgtctttaaat
gi|3 : ttaaagaggcatcacctgtaagtccgatatttttagataaaaatatttaacactgattatttaaatgctaacattttaaaaaagctatttcatgaactttttgttcttttctgtttttgtaaaacgtgttttatagccggattgttgttgatgtcgattaaatcctgtcctgctataaatgctacaaCTG--ATTTCTTCA-AGTTACATGGGTTTCTTTCAGA----CTAGG-----T--------ACAGTTGGATCATTTAGTAGATAT-AA---ATGCACAGGCGAGGCGTCTTTAAATaggttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtagcacctgtctgatttcttcaagttacatgggtttctttcagactaggtacagttggatcatttagtagatataaatgcacaggcgaggcgtctttaaat
gi|4 : ttaaagaggcatcacctgtaagtccgatatttttagataaaaatatttaacactgattatttaaatgctaacattttaaaaaagctatttcatgaactttttgttcttttctgtttttgtaaaacgtgttttatagccggattgttgttgatgtcgattaaatcctgtcctgctataaatgctacaacaacaactatcctaaatccgataattccagagtgacataaacaaatcttcaggttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtagcacctgtTTAAAGAGGCATCATCTCTAAGTCTGATAGTT--TTAGAATAA--A--A-T-AT-TTAA-C-ACTGATTATTTAAATGCTACCATATAAATAAAACTATTTTATGAACTTT-----TTGTTCT-GAAAAATGTGTATTTTTTTC-TGCT------TCTG----------TAATGCATGTTTTACAGTTAGAAT-GTG--GTG-------------TTGTTGT-TGTCGATTAAATCGTGTCCCGCTCTAAA----TACAACAAC--AAC------ATCCTAA
gi|4 : tGCTC--TAAAT---AC--AAC---AACAAC-ATCCTAAATACGATAATTCCTGAGTGACAATAATACATTTTC-------GAATTatacgataattcctgagtgacaataatacattttcgaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacacaccaattgtttcaagttacatgggtttctttcagtggacataaaatgtataggggaggcctcttta
gi|4 : tttaaagaggcatcatctctaagtctgatagttttagaataaaatatttaacactgattatttaaatgctaccatataaataaaactattttatgaactttttgttctgaaaaatgtgtatttttttctgcttctgtaatgcatgttttacagttagaatgtggtgttgttgttgtcgattaaatcgtgtcccCACACCA--ATTGTTTCA-AGTTACATGGGTTTCTTTCAG-----------------------------------------TGGACATAAA---ATGTATAGGGGAGGCCTCTTTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacacaccaattgtttcaagttacatgggtttctttcagtggacataaaatgtataggggaggcctcttta
gi|5 : tttaaagaggcatcatctctaagtctgatagttttagaataaaatatttaacactgattatttaaatgctaccatataaataaaactattttatgaactttttgttctgaaaaatgtgtatttttttctgcttctgtaatgcatgttttacagttagaatgtggtgttgttgttgtcgattaaatcgtgtcccgctctaaatacaacaacaacatcctaaatacgataattcctgagtgacaataatacattttcgaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataaCTATTTTATGAACTTT-----TTGTTCA-GAAACATGTG--TTCTTTTC-TGTT------TCTG----------TAATGCATGTTTTA----CAGAAT-ATG--GTG-------------TGGTTGT-TTTCGATTAATTTGCGTCCCGCTCTAAATGC-T-----------ACAA--CTATCCTGAATCCGATAATTCCTG---AGCGACAATAA------TAAATC
gi|5 : GCTC--TAAATGCTAC--AA---------CTATCCTGAATCCGATAATTCCTGAGCGACAATAATAAATCTTT-------GGATTTTCGGT---AAT----------CACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAACACATGTT-GTTGTAGAAAA-TTGCACCT--ATTTCTTCA-AGTTATATGGGTTTCTTTCCGA----CTAtttggattttcggtaatcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtaacacatgttgttgtagaaaattgcacctatttcttcaagttatatgggtttctttccgactaa
gi|6 : ctattttatgaactttttgttcagaaacatgtgttcttttctgtttctgtaatgcatgttttacagaatatggtgtggttgttttcgattaatttgcgtcccCAGAAG-GTGAAGTA-------------TTGTTAT-TGACTACTTTATTGCACCCTGATCTAAATTC-AACAACAGCAAAACAAATTTATCCa
gi|6 : ACCCTGA--TC--TAAATTCAAC--AACAGCAA-AACAAATTTA--TCCGATCATTCTCTATT----ATAACAAATCTTT-------GAATTTCCCGTTTCAATGGAAGGCATGCATTCAGCGTTTTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-T-GTTGTAGAA-------ACTT--ATTTA-TCACAGTTATATGATTTTCTTTCCGA----CTACG-----T--------GCAATTGGATCATGTCTTAGATAT-GC---CTTTATAAGGGGGGCCACTTTAAAgatcattctctattataacaaatctttgaatttcccgtttcaatggaaggcatgcattcagcgttttagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgttgtagaaacttatttatcacagttatatgattttctttccgactacgtgcaattggatcatgtcttagatatgcctttataaggggggccactttaaac
gi|7 : cagaaggtgaagtattgttattgactactttattgcGATGTATCATCTATAAGTCTGATA-TT--TTAGAA-AA--A--AGT--T-ATAA-T-A-TGATTATTATAATGTAATCCTGT-AATAAAGATATTTCATGAACTTG-----TTATTT----AACATGTC--TT-TTTTC-TGTT------TTTC----------TAATATG-ACTTTGCAGTCAGAAT-GTAAAGTGAGGTGTCCCCGTCTTCTTAC-TGTTACTT-TATAGTGCTCTATTCTGAAGAG-TACAACAGC--AACc
gi|8 : aaccaaaattcagtctttatatactgccaatcaatattcatTTAAAGAAGCATTACATATAAGTCCGATATTT--T-AGGATAT--A--A-T-AT-TTAA-C-AATGATTATTTAAATGCTATCATATAAGTAAAGCTAGTTTATGAACATT-----TTGTTCA-GAAACATGTG--TTCTTCTC-TGCTTCTAGATCTG----------TAATGCGTGTTTTACAGTCAGAAT-GGGAAGTG-------------TTG-TG---GTCGAATAAATAGCGTCCCGCTCTAAATCC-TAcattcaaactagtctgatacttctcttctgaatgc
gi|8 : ATCCTAAATCCGATAATTCCCGAGCGACAAaatccgataattcccgagcgacaa
gi|9 : ttaaagaagcattacatataagtccgatattttaggatataatatttaacaatgattatttaaatgctatcatataagtaaagctagtttatgaacattttgttcagaaacatgtgttcttctctgcttctagatctgtaatgcgtgttttacagtcagaatgggaagtgttgtggtcgaataaatagcgtcccgctctaaCATCACCTATAACTCCCA-GTTTCATTAAAATAATGATTAATCAT-TAAA-CTAATGATTATT---ATATT-TC-TGTATATAAAACTATTTTGTGAACTTTATATGTTATT----AAACATGT--------------CT------TGTG----------TTATG---ATATGACGGTCA-AATGGCGAAATG-------------TCA-TGTCTGTCTATTTAATTGCACCCCGTTATAAA-GCATACACCA
Alignments
lowQualScore : 1111111 11111 111111 1111111111 2222222222222 11111111111 2222222 111 2222222222 66666666666666666666666666666666666666666666666666666666666666666666 1 1111111111111111
lowQualScore : 66 3 6666666 4 4 4 4 2 5 2 3 00000 77 1 888 4 111111 7777777777 3 3 2 0000000000000 7 6 3 2 44 4 1 2 77 99 66 77 55555555555 3 5 1 1111111 1 222 4444444444 88888888888888888888888888888888888888888888888888888888888888888888 3 4 77 33 2 2 1 5555 3333333333333333 6 444 0
lowQualScore : .. . ....... . . . . . . . . ..... .. . ... . ...... .......... . . . ............. . . . . .. . . . .. .. .. .. ........... . . . ....... . ... .......... .................................................................... . . .. .. . . . .... ................ . ... .
lowQualScore : 11 7 7777777 4 4 4 4 9 1 0 7 00000 33 6 000 0 555555 5555555555 2 6 1 0000000000000 3 0 9 3 77 4 9 5 99 22 77 99 99999999999 4 1 4 7777777 0 000 8888888888 00000000000000000000000000000000000000000000000000000000000000000000 6 5 88 44 1 5 9 3333 7777777777777777 4 444 2
consensus : TTAAAGAGGCATCACCTATAAGTCCGATATTT--TTAGGATAA--A--AAT-AT-TTAA-C-ACTGATTATTTAAATGCTATCATATAAATAAAGCTATTTTATGAACTTT-----TTGTTCA-GAAACATGTG--TTCTTTTC-TGCT------TCTG----------TAATGCGTGTTTTACAGTCAGAAT-GTGAAGTG-------------TTGTTGT-TGTCGATTAAATCGCGTCCCGCTCTAAATGC-TACAACAGC--AACAA--CTATCCTAAGCTC--TAAATGCTAC--AACGGCAACAACTATCCTAAATCCGATAATTCCCGAGCGACAATAACAAATCTTC-------GAATTTCCNGTTTCAATGGAAGGCATGCACTCAGCGTTTTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGACACGTG-T-GTTGTAGAAAA-TCGCACCG--ATTTCTTCA-AGTTACATGGGTTTCTTTCAGA----CTANG-----T--------ACAGTTGGATCATTTCGTGGACATAAA---ATGTATAGGCGAGGCCTCTTTAAAT
Reference ( family-138 ) : TTAAAGAGGCATCACCTATAAGTCCGATATTT--TTAGGATAA--A--AAT-AT-TTAA-C-ACTGATTATTTAAATGCTATCATATAAATAAAGCTATTTTATGAACTTT-----TTGTTCA-GAAACATGTG--TTCTTTTC-TGCT------TCTG----------TAATGCGTGTTTTACAGTCAGAAT-GTGAAGTG-------------TTGTTGT-TGTCGATTAAATCGCGTCCCGCTCTAAATGC-TACAACAGC--AACAA--CTATCCTAAGCTC--TAAATGCTAC--AACGGCAACAACTATCCTAAATCCGATAATTCCCGAGCGACAATAACAAATCTTC-------GAATTTCCNGTTTCAATGGAAGGCATGCACTCAGCGTTTTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGACACGTG-T-GTTGTAGAAAA-TCGCACCG--ATTTCTTCA-AGTTACATGGGTTTCTTTCAGA----CTANG-----T--------ACAGTTGGATCATTTCGTGGACATAAA---ATGTATAGGCGAGGCCTCTTTAAAT
gi|1 : TTAAAGAGGCATCACCTACACGTCCGATATTT--TTAGGGTAA--A--AAT-AG-TTAA-C-ACTGATTATTTAAATGCTATCATATGAATAAAGCTATTTTATGAACTTT-----TTGTTCA-GAAACATGCG--TTCTTTTC-TGCT------TCTGTAATAGTCTATAATGCGTGTTTTACAATCAGAAT-GTGAAGTG-------------TTGTTGT-TGTCGATTAAATTGCGTCCCG-TTTAAATGC-TACAACAGC--AACAA--CTATCATAAGCTC--TAAATGCTAC--AACAGCAACAACTATCATAAATCCGATAATTCCCGAGCAAC-ATAACAAATCTTA-------CAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATATG-T-GCTGTAGAAAA-TCGCACCG--ATTTTTTCA-AGTTACATGGGTATCTTCCAGA----CTAAG-----T--------ACTTTTGAATCATTTCGTGGACATAAA---ATGTGTAGGCAAGGCTTCTTTAAAT
gi|10 : TAAGAAGACATCACCTATAAATCTGATTTTT--TTAGGAT-------AAT-ATGTTAAGA-ATTGACTATTATGATACAATCTTATAAATAATACTTTTTGATCAACTGT-----TTG-CCATGAAA----------CTCACCGTGAA------TCGG----------TGATATG-GATTTGCGATAAATAA-GTGAAATG-------------GTGTTGTATAT--ATT--ATAGCGACCCGTTATAAA
gi|11 : TAAAGACCCATCACCTATAAGTCCGATATTT--TTAGTTTAA--C--C-T-AT-TAAA-C-ACTGATTATTAAAATGCTATAATATCAAAAAAATT-TTTTAAGAACTTT-----CTGTTCA-GAAACGTGCG--TTCTTTTC-TGCT------GCGG----------TAATGTGTGTTTTACAGTCCGAAT-GTGAAGTG-------------TTATAGT-TGTC
gi|12 : TG-T-GCTGCAGAAAA-CCACTCTG--ATTTTT----AGTTCCATGATTGTCTTACAGATATTCCAGGCTGCCT--------ACAGTCTGATAATTTCATAGACAT-AA---ATGTATAAGTGAGGCCACTTTAA
gi|13 : caagtgtGTT-T-GTTGTAGAAAA-TTACACCG--TTTTTTTCC-TGCGACATGGGTTTCTTTGTGA----CTATG-----TGTAGCTGGGTAGTTGGATAATTCCGTGGACATAAA---ACGTAGTGGTGAGTCATCTTTAAAtaca
gi|14 : tACGTG-TTGTTGTAGAAAG-TCGCACCA--ATTTCTGCA-AGTTACATAGGTTTCGTTCAGA----CTATG-----T--------GCAGTTGGATCATTTTGTTGACATCAA---ATGTATAGGCAAGGCCTC-TTAAA
gi|15 : -T-GCTGCAGAAA--TCAAACTG--ATATCTTCA-ATTTACATGCATATCTGTCAGA----CTATG-----T--------ATGGTTGAATAATTTTGCTGACATTAATCCATGCAT----GAGGTCCTTTTAgat
gi|16 : tgtTTGTGGAAA--TTGCACAGGAATTTTT--A-AGTTGCACGA-TTTCTTTCAGA----CTACA-----T--------GCAGTTGACTCAAATCATGGGCAT-AA---ATATATAGGCGATGTCTCTTCAAAggt
gi|17 : gttgcTGCAGAAAT-AAGCACTG--ATTTCCAAA-AGTGTTATGATTTTCTGTCAGA----CTAAA-----T--------AAAGTTGAAACATTTTATAGACATACA---TTA-ATAGGTAAGGGCT-TTTAAATa
gi|18 : acCGTG-TTGTTGTAGAATA-TCGCATCG--GTATCTCCA-AGTTACATGGGTTTCTT----A----CTG----------------ACAGTTGGATCCTTTCGTGTACATAAA---ACGCATAGTTG-GGTCTCCTa
gi|19 : ACACGTG-TTGTTGTATAAAA-TCGCATCG--AGTTCTTCT-TATTACATG---------------------------T--------ACAGTAGGATCATTTCGTGGACATAAA---ATGTATAGGCGAGGTCTCTTTAAAgataa
gi|2 : TTAAAGAGGCATT--TTA-AAGTTCAATATTT--TTAGGATAA--A--A-T-AT-TTAA-C-ACTGATTATTTAAGTGCTTTAATATAAATAAAGCTATTTTATGAACTTT-----TTGTTCA-GAAATATGTC--TTCTTTAC-TGCT------TCTG----------TAATGCATGTTTTACAGTCAGAAT-GTGAAGTA-------------TAGTTGT-TGTCGATTAAATCGCATCTCACTCTAAATGC-T------GC--AACAA--CTATCCTAAA-TC--CAATTATTTCCGAATGGCAATAACa
gi|2 : CTC--TAAATGCT--------GCAACAACTATCCTAAATCCAATTATTTCCGAATGGCAATAACATTTCTTCGGATTTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACACATG-TTGTTGTAGAAAA-TCACATTG--ATTTCTTCA-AGTTGCATGGGTTTCATTCAGA----CTAGG-----T--------CAAGTTGGGTCATTTCCTGGACATAAA---ATATACAGGCGAGCTCTCTTTAAAatttcttcggattttgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgacacatgttgttgtagaaaatcacattgatttcttcaagttgcatgggtttcattcagactaggtcaagttgggtcatttcctggacataaaatatacaggcgagctctctttaaa
gi|20 : ttaaagaggcattttaaagttcaatatttttaggataaaatatttaacactgattatttaagtgctttaatataaataaagctattttatgaactttttgttcagaaatatgtcttctttactgcttctgtaatgcatgttttacagtcagaatgtgaagtatagttgttgtcgattaaatcgcatctcaACCT--ATATCTTCA-AGTTACATAGGTTTCTTTCAGA----CTAGG-----T--------ACAGTTGCATCATTTCGTGGACATAAA---ATGTACAGGAAATGCCTCTTTAA
gi|21 : -T-GCTGTAGAAAGTTCGCACTG--ATTTC-CCA-AGCTGCATAGTTTTGTTTCAGA----GTACG-----A--------ATAGTCGGc
gi|22 : caagtat--------ACAGTTGAATCATTTCGTGAACATAAA---ATGTATAGGCGAGACCTTCTTAAGT
gi|23 : --------ACGGTTGAATCATTTCGTGGACATAAA---ATGAATAAGCGAGCCCTCTTTAAA
gi|3 : TTAAAGAGGCATCACCTGTAAGTCCGATATTT--TTAG-ATAA--A--AAT-AT-TTAA-C-ACTGATTATTTAAATGCTAACATTTTAAAAAAGCTATTTCATGAACTTT-----T---------------TG--TTCTTTTC-TGTT------TTTG----------TAAAACGTGTTTTATAGCC-GGAT-------TG-------------TTGTTGA-TGTCGATTAAATCCTGTCCTGCTATAAATGC-TACAA---C--AACAA--CTATCCTAA
gi|3 : CAACAACTATCCTAAATCCGATAATTCCAGAGTGACATAAACAAATCTTC-------atccgataattccagagtgacataaacaaatcttcaggttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtagcacctgtctgatttcttcaagttacatgggtttctttcagactaggtacagttggatcatttagtagatataaatgcacaggcgaggcgtctttaaat
gi|3 : ttaaagaggcatcacctgtaagtccgatatttttagataaaaatatttaacactgattatttaaatgctaacattttaaaaaagctatttcatgaactttttgttcttttctgtttttgtaaaacgtgttttatagccggattgttgttgatgtcgattaaatcctgtcctgctataaatgctacaaCTG--ATTTCTTCA-AGTTACATGGGTTTCTTTCAGA----CTAGG-----T--------ACAGTTGGATCATTTAGTAGATAT-AA---ATGCACAGGCGAGGCGTCTTTAAATaggttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtagcacctgtctgatttcttcaagttacatgggtttctttcagactaggtacagttggatcatttagtagatataaatgcacaggcgaggcgtctttaaat
gi|4 : ttaaagaggcatcacctgtaagtccgatatttttagataaaaatatttaacactgattatttaaatgctaacattttaaaaaagctatttcatgaactttttgttcttttctgtttttgtaaaacgtgttttatagccggattgttgttgatgtcgattaaatcctgtcctgctataaatgctacaacaacaactatcctaaatccgataattccagagtgacataaacaaatcttcaggttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtagcacctgtTTAAAGAGGCATCATCTCTAAGTCTGATAGTT--TTAGAATAA--A--A-T-AT-TTAA-C-ACTGATTATTTAAATGCTACCATATAAATAAAACTATTTTATGAACTTT-----TTGTTCT-GAAAAATGTGTATTTTTTTC-TGCT------TCTG----------TAATGCATGTTTTACAGTTAGAAT-GTG--GTG-------------TTGTTGT-TGTCGATTAAATCGTGTCCCGCTCTAAA----TACAACAAC--AAC------ATCCTAA
gi|4 : tGCTC--TAAAT---AC--AAC---AACAAC-ATCCTAAATACGATAATTCCTGAGTGACAATAATACATTTTC-------GAATTatacgataattcctgagtgacaataatacattttcgaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacacaccaattgtttcaagttacatgggtttctttcagtggacataaaatgtataggggaggcctcttta
gi|4 : tttaaagaggcatcatctctaagtctgatagttttagaataaaatatttaacactgattatttaaatgctaccatataaataaaactattttatgaactttttgttctgaaaaatgtgtatttttttctgcttctgtaatgcatgttttacagttagaatgtggtgttgttgttgtcgattaaatcgtgtcccCACACCA--ATTGTTTCA-AGTTACATGGGTTTCTTTCAG-----------------------------------------TGGACATAAA---ATGTATAGGGGAGGCCTCTTTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacacaccaattgtttcaagttacatgggtttctttcagtggacataaaatgtataggggaggcctcttta
gi|5 : tttaaagaggcatcatctctaagtctgatagttttagaataaaatatttaacactgattatttaaatgctaccatataaataaaactattttatgaactttttgttctgaaaaatgtgtatttttttctgcttctgtaatgcatgttttacagttagaatgtggtgttgttgttgtcgattaaatcgtgtcccgctctaaatacaacaacaacatcctaaatacgataattcctgagtgacaataatacattttcgaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataaCTATTTTATGAACTTT-----TTGTTCA-GAAACATGTG--TTCTTTTC-TGTT------TCTG----------TAATGCATGTTTTA----CAGAAT-ATG--GTG-------------TGGTTGT-TTTCGATTAATTTGCGTCCCGCTCTAAATGC-T-----------ACAA--CTATCCTGAATCCGATAATTCCTG---AGCGACAATAA------TAAATC
gi|5 : GCTC--TAAATGCTAC--AA---------CTATCCTGAATCCGATAATTCCTGAGCGACAATAATAAATCTTT-------GGATTTTCGGT---AAT----------CACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAACACATGTT-GTTGTAGAAAA-TTGCACCT--ATTTCTTCA-AGTTATATGGGTTTCTTTCCGA----CTAtttggattttcggtaatcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtaacacatgttgttgtagaaaattgcacctatttcttcaagttatatgggtttctttccgactaa
gi|6 : ctattttatgaactttttgttcagaaacatgtgttcttttctgtttctgtaatgcatgttttacagaatatggtgtggttgttttcgattaatttgcgtcccCAGAAG-GTGAAGTA-------------TTGTTAT-TGACTACTTTATTGCACCCTGATCTAAATTC-AACAACAGCAAAACAAATTTATCCa
gi|6 : ACCCTGA--TC--TAAATTCAAC--AACAGCAA-AACAAATTTA--TCCGATCATTCTCTATT----ATAACAAATCTTT-------GAATTTCCCGTTTCAATGGAAGGCATGCATTCAGCGTTTTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-T-GTTGTAGAA-------ACTT--ATTTA-TCACAGTTATATGATTTTCTTTCCGA----CTACG-----T--------GCAATTGGATCATGTCTTAGATAT-GC---CTTTATAAGGGGGGCCACTTTAAAgatcattctctattataacaaatctttgaatttcccgtttcaatggaaggcatgcattcagcgttttagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgttgtagaaacttatttatcacagttatatgattttctttccgactacgtgcaattggatcatgtcttagatatgcctttataaggggggccactttaaac
gi|7 : cagaaggtgaagtattgttattgactactttattgcGATGTATCATCTATAAGTCTGATA-TT--TTAGAA-AA--A--AGT--T-ATAA-T-A-TGATTATTATAATGTAATCCTGT-AATAAAGATATTTCATGAACTTG-----TTATTT----AACATGTC--TT-TTTTC-TGTT------TTTC----------TAATATG-ACTTTGCAGTCAGAAT-GTAAAGTGAGGTGTCCCCGTCTTCTTAC-TGTTACTT-TATAGTGCTCTATTCTGAAGAG-TACAACAGC--AACc
gi|8 : aaccaaaattcagtctttatatactgccaatcaatattcatTTAAAGAAGCATTACATATAAGTCCGATATTT--T-AGGATAT--A--A-T-AT-TTAA-C-AATGATTATTTAAATGCTATCATATAAGTAAAGCTAGTTTATGAACATT-----TTGTTCA-GAAACATGTG--TTCTTCTC-TGCTTCTAGATCTG----------TAATGCGTGTTTTACAGTCAGAAT-GGGAAGTG-------------TTG-TG---GTCGAATAAATAGCGTCCCGCTCTAAATCC-TAcattcaaactagtctgatacttctcttctgaatgc
gi|8 : ATCCTAAATCCGATAATTCCCGAGCGACAAaatccgataattcccgagcgacaa
gi|9 : ttaaagaagcattacatataagtccgatattttaggatataatatttaacaatgattatttaaatgctatcatataagtaaagctagtttatgaacattttgttcagaaacatgtgttcttctctgcttctagatctgtaatgcgtgttttacagtcagaatgggaagtgttgtggtcgaataaatagcgtcccgctctaaCATCACCTATAACTCCCA-GTTTCATTAAAATAATGATTAATCAT-TAAA-CTAATGATTATT---ATATT-TC-TGTATATAAAACTATTTTGTGAACTTTATATGTTATT----AAACATGT--------------CT------TGTG----------TTATG---ATATGACGGTCA-AATGGCGAAATG-------------TCA-TGTCTGTCTATTTAATTGCACCCCGTTATAAA-GCATACACCA
blockSeqs : CA G TGATTAA C G G T T A T A ATATG AT C GTA G TCTAGA . T G A AGGTGTCCCCGTC A A A T TG A A C AA AT GC GA ATTTCCGAATG T T A GGATTTT N NNN NNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN T T GT GA T C T TATT TGTGTAGCTGG A TCC
blockSeqs : . T AAA . . . . C A A C . A T G . . . T . A . C A C C TG . A C . . AT . TCAACAACA C T A . G TTC GGAAGGCATG NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . T A . G . G . GGCTGCCT C .
blockSeqs : . G AAG . . . . C T A A . A A C . . . T . A . . A C C TG . A C . . GC . CCTGAGCG C T A . C . . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . T A . T . G . TGT T .
blockSeqs : . A AA . . . . C T A T . T C G . . . T . A . . A C C TT . A C . . A . GCTACAA C A A . . T G . A . A . TGT A .
blockSeqs : . A CC . . . . C T A A . A C G . . . T . A . . T T C GA . A . . . . . ACAAC T . A . . . T . C . T . CAT A .
blockSeqs : . G AA . . . . A A C A . A C C . . . T . A . . A T A TC . A . . . GCT . . . . . A . T . G . AAT A .
blockSeqs : . A AA . . . . A T A A . . C G . . . . . A . . T A T G . . . . . . A . T . G . GGT A .
blockSeqs : . . AA . . . . . . . . . . . . . . . . . . . . . A C . . . . . A . T . G . GGT A .
blockSeqs : . . . . . . . . . . . . . T T . . A . C . T . CGA A .
blockSeqs : . . . . . . . . T . G . GGT A .
blockSeqs : . . T . G . CGT A .
blockSeqs : . . T . G . T . .
blockSeqs : . T . T . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons : AA***** ********** NCTACAA****
originalCons : TTAAAGAGGCATCACCTATAAGTCCGATATTT--TTAGGATAA--A--AAT-AT-TTAA-C-ACTGATTATTTAAATGCTATCATATAAATAAAGCTATTTTATGAACTTT-----TTGTTCA-GAAACATGTG--TTCTTTTC-TGCT------TCTG----------TAATGCGTGTTTTACAGTCAGAAT-GTGAAGTG-------------TTGTTGT-TGTCGATTAAATCGCGTCCCGCTCTAAATGC-TACAACAGC--AACAA--CTATCCTAAGCTC--TAAATGCTAC--AACGGCAACAACTATCCTAAATCCGATAATTCCCGAGCGACAATAACAAATCTTC-------GAATTTCCNGTTTCAATGGAAGGCATGCACTCAGCGTTTTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGACACGTG-T-GTTGTAGAAAA-TCGCACCG--ATTTCTTCA-AGTTACATGGGTTTCTTTCAGA----CTANG-----T--------ACAGTTGGATCATTTCGTGGACATAAA---ATGTATAGGCGAGGCCTCTTTAAAT
finalCons : TTAAAGAGGCATCACCTATAAGTCCGATATTT--TTAGGATAAAA-----T-AT-TTAA-C-ACTGATTATTTAAATGCTATCATATAAATAAAGCTATTTTATGAACTTT-----TTGTTCA-GAAACATGTG--TTCTTTTC-TGCT------TCTG----------TAATGCGTGTTTTACAGTCAGAAT-GTGAAGTG-------------TTGTTGT-TGTCGATTAAATCGCGTCCCGCTCTAAATGC-TACAACAGC--AACAA--CTATCCTAAGCTC--TAAATNCTACAA----GCAACAACTATCCTAAATCCGATAATTCCCGAGCGACAATAACAAATCTTC-------GAATTTCCNGTTTCAATGGAAGGCATGCACTCAGCGTTTTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGACACGTG-T-GTTGTAGAAAA-TCGCACCG--ATTTCTTCA-AGTTACATGGGTTTCTTTCAGA----CTANG-----T--------ACAGTTGGATCATTTCGTGGACATAAA---ATGTATAGGCGAGGCCTCTTTAAAT
Alignments
lowQualScore : 11111 11111 111111 1111111111 2222222222222 222222222222 44444444444444 22222222 111 2222222222 66666666666666666666666666666666666666666666666666666666666666666666 1 1111111111111111
lowQualScore : 66 4 11111 4 4 4 2 5 2 3 00000 77 1 888 4 111111 7777777777 3 3 2 0000000000000 7 6 3 2 222222222222 3 11 66 5 0 11111111111111 3 11 1 3 1 77777777 1 222 4444444444 88888888888888888888888888888888888888888888888888888888888888888888 3 4 77 33 2 2 1 5555 3333333333333333 6 444 0
lowQualScore : .. . ..... . . . . . . . ..... .. . ... . ...... .......... . . . ............. . . . . ............ . .. .. . . .............. . .. . . . ........ . ... .......... .................................................................... . . .. .. . . . .... ................ . ... .
lowQualScore : 11 4 11111 4 4 4 9 1 0 7 00000 33 6 000 0 555555 5555555555 2 6 1 0000000000000 3 0 9 3 666666666666 2 11 99 0 5 00000000000000 5 44 0 2 0 44444444 0 000 8888888888 00000000000000000000000000000000000000000000000000000000000000000000 6 5 88 44 1 5 9 3333 7777777777777777 4 444 2
consensus : TTAAAGAGGCATCACCTATAAGTCCGATATTT--TTAGGAT-AA-----AA-T-ATTTAAC-ACTGATTATTTAAATGCTATCATATAAATAAAGCTATTTTATGAACTTT-----TTGTTCA-GAAACATGTG--TTCTTTTC-TGCT------TCTG----------TAATGCGTGTTTTACAGTCAGAAT-GTGAAGTG-------------TTGTTGT-TGTCGATTAAATCGCGTCCCGCTCTAAATGC-TACAACAGCAACAACTATCCTAAGCTC--TA-AATGCTAC--A--A--GCGACAACTATCCTAAATCCGATAATTCCCGAGCGACAATAACAAATCTTC-------GAATTTCCNGTTTCAATGGAAGGCATGCACTCAGCGTTTTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGACACGTG-T-GTTGTAGAAAA-TCGCACCG--ATTTCTTCA-AGTTACATGGGTTTCTTTCAGA----CTANG-----T--------ACAGTTGGATCATTTCGTGGACATAAA---ATGTATAGGCGAGGCCTCTTTAAAT
Reference ( family-138 ) : TTAAAGAGGCATCACCTATAAGTCCGATATTT--TTAGGAT-AA-----AA-T-ATTTAAC-ACTGATTATTTAAATGCTATCATATAAATAAAGCTATTTTATGAACTTT-----TTGTTCA-GAAACATGTG--TTCTTTTC-TGCT------TCTG----------TAATGCGTGTTTTACAGTCAGAAT-GTGAAGTG-------------TTGTTGT-TGTCGATTAAATCGCGTCCCGCTCTAAATGC-TACAACAGCAACAACTATCCTAAGCTC--TA-AATNCTAC--A--A--GCAACAACTATCCTAAATCCGATAATTCCCGAGCGACAATAACAAATCTTC-------GAATTTCCNGTTTCAATGGAAGGCATGCACTCAGCGTTTTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGACACGTG-T-GTTGTAGAAAA-TCGCACCG--ATTTCTTCA-AGTTACATGGGTTTCTTTCAGA----CTANG-----T--------ACAGTTGGATCATTTCGTGGACATAAA---ATGTATAGGCGAGGCCTCTTTAAAT
gi|1 : TTAAAGAGGCATCACCTACACGTCCGATATTT--TTAGGGT-AA-----AAAT-AGTTAAC-ACTGATTATTTAAATGCTATCATATGAATAAAGCTATTTTATGAACTTT-----TTGTTCA-GAAACATGCG--TTCTTTTC-TGCT------TCTGTAATAGTCTATAATGCGTGTTTTACAATCAGAAT-GTGAAGTG-------------TTGTTGT-TGTCGATTAAATTGCGTCCCG-TTTAAATGC-TACAACAGCAACAACTATCATAAGCTC--TA-AATGCTAC--AACA--GCAACAACTATCATAAATCCGATAATTCCCGAGCAAC-ATAACAAATCTTA-------CAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATATG-T-GCTGTAGAAAA-TCGCACCG--ATTTTTTCA-AGTTACATGGGTATCTTCCAGA----CTAAG-----T--------ACTTTTGAATCATTTCGTGGACATAAA---ATGTGTAGGCAAGGCTTCTTTAAAT
gi|10 : TAAGAAGACATCACCTATAAATCTGATTTTT--TTAGGAT-AA-----TA-T-GTTAAGA-ATTGACTATTATGATACAATCTTATAAATAATACTTTTTGATCAACTGT-----TTG-CCATGAAA----------CTCACCGTGAA------TCGG----------TGATATG-GATTTGCGATAAATAA-GTGAAATG-------------GTGTTGTATAT--ATT--ATAGCGACCCGTTATAAA
gi|11 : TAAAGACCCATCACCTATAAGTCCGATATTT--TTAGTTT-AA-----CC-T-ATTAAAC-ACTGATTATTAAAATGCTATAATATCAAAAAAATT-TTTTAAGAACTTT-----CTGTTCA-GAAACGTGCG--TTCTTTTC-TGCT------GCGG----------TAATGTGTGTTTTACAGTCCGAAT-GTGAAGTG-------------TTATAGT-TGTC
gi|12 : TG-T-GCTGCAGAAAA-CCACTCTG--ATTTTT----AGTTCCATGATTGTCTTACAGATATTCCAGGCTGCCT--------ACAGTCTGATAATTTCATAGACAT-AA---ATGTATAAGTGAGGCCACTTTAA
gi|13 : caagtgtGTT-T-GTTGTAGAAAA-TTACACCG--TTTTTTTCC-TGCGACATGGGTTTCTTTGTGA----CTATG-----TGTAGCTGGGTAGTTGGATAATTCCGTGGACATAAA---ACGTAGTGGTGAGTCATCTTTAAAtaca
gi|14 : tACGTG-TTGTTGTAGAAAG-TCGCACCA--ATTTCTGCA-AGTTACATAGGTTTCGTTCAGA----CTATG-----T--------GCAGTTGGATCATTTTGTTGACATCAA---ATGTATAGGCAAGGCCTC-TTAAA
gi|15 : -T-GCTGCAGAAA--TCAAACTG--ATATCTTCA-ATTTACATGCATATCTGTCAGA----CTATG-----T--------ATGGTTGAATAATTTTGCTGACATTAATCCATGCAT----GAGGTCCTTTTAgat
gi|16 : tgtTTGTGGAAA--TTGCACAGGAATTTTT--A-AGTTGCACGA-TTTCTTTCAGA----CTACA-----T--------GCAGTTGACTCAAATCATGGGCAT-AA---ATATATAGGCGATGTCTCTTCAAAggt
gi|17 : gttgcTGCAGAAAT-AAGCACTG--ATTTCCAAA-AGTGTTATGATTTTCTGTCAGA----CTAAA-----T--------AAAGTTGAAACATTTTATAGACATACA---TTA-ATAGGTAAGGGCT-TTTAAATa
gi|18 : acCGTG-TTGTTGTAGAATA-TCGCATCG--GTATCTCCA-AGTTACATGGGTTTCTT----A----CTG----------------ACAGTTGGATCCTTTCGTGTACATAAA---ACGCATAGTTG-GGTCTCCTa
gi|19 : ACACGTG-TTGTTGTATAAAA-TCGCATCG--AGTTCTTCT-TATTACATG---------------------------T--------ACAGTAGGATCATTTCGTGGACATAAA---ATGTATAGGCGAGGTCTCTTTAAAgataa
gi|2 : TTAAAGAGGCATT--TTA-AAGTTCAATATTT--TTAGGAT-AA-----AA-T-ATTTAAC-ACTGATTATTTAAGTGCTTTAATATAAATAAAGCTATTTTATGAACTTT-----TTGTTCA-GAAATATGTC--TTCTTTAC-TGCT------TCTG----------TAATGCATGTTTTACAGTCAGAAT-GTGAAGTA-------------TAGTTGT-TGTCGATTAAATCGCATCTCACTCTAAATGC-T------GCAACAACTATCCTAAA-TC--CA-ATTATTTCCGA--ATGGCAATAACa
gi|2 : CTC--TA-AATGCT----------GCAACAACTATCCTAAATCCAATTATTTCCGAATGGCAATAACATTTCTTCGGATTTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACACATG-TTGTTGTAGAAAA-TCACATTG--ATTTCTTCA-AGTTGCATGGGTTTCATTCAGA----CTAGG-----T--------CAAGTTGGGTCATTTCCTGGACATAAA---ATATACAGGCGAGCTCTCTTTAAAatttcttcggattttgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgacacatgttgttgtagaaaatcacattgatttcttcaagttgcatgggtttcattcagactaggtcaagttgggtcatttcctggacataaaatatacaggcgagctctctttaaa
gi|20 : ttaaagaggcattttaaagttcaatatttttaggataaaatatttaacactgattatttaagtgctttaatataaataaagctattttatgaactttttgttcagaaatatgtcttctttactgcttctgtaatgcatgttttacagtcagaatgtgaagtatagttgttgtcgattaaatcgcatctcaACCT--ATATCTTCA-AGTTACATAGGTTTCTTTCAGA----CTAGG-----T--------ACAGTTGCATCATTTCGTGGACATAAA---ATGTACAGGAAATGCCTCTTTAA
gi|21 : -T-GCTGTAGAAAGTTCGCACTG--ATTTC-CCA-AGCTGCATAGTTTTGTTTCAGA----GTACG-----A--------ATAGTCGGc
gi|22 : caagtat--------ACAGTTGAATCATTTCGTGAACATAAA---ATGTATAGGCGAGACCTTCTTAAGT
gi|23 : --------ACGGTTGAATCATTTCGTGGACATAAA---ATGAATAAGCGAGCCCTCTTTAAA
gi|3 : TTAAAGAGGCATCACCTGTAAGTCCGATATTT--TTA-GATAAA-----AA-T-ATTTAAC-ACTGATTATTTAAATGCTAACATTTTAAAAAAGCTATTTCATGAACTTT-----T---------------TG--TTCTTTTC-TGTT------TTTG----------TAAAACGTGTTTTATAGCC-GGAT-------TG-------------TTGTTGA-TGTCGATTAAATCCTGTCCTGCTATAAATGC-TACAA---CAACAACTATCCTAAATCC--GATAATTCCA---G--A--GTGACA
gi|3 : CTG--ATTTCTTCA-AGTTACATGGGTTTCTTTCAGA----CTAGG-----T--------ACAGTTGGATCATTTAGTAGATAT-AA---ATGCACAGGCGAGGCGTCTTTAAATtaaacaaatcttcaggttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtagcacctgtctgatttcttcaagttacatgggtttctttcagactaggtacagttggatcatttagtagatataaatgcacaggcgaggcgtctttaaat
gi|4 : ttaaagaggcatcacctgtaagtccgatatttttagataaaaatatttaacactgattatttaaatgctaacattttaaaaaagctatttcatgaactttttgttcttttctgtttttgtaaaacgtgttttatagccggattgttgttgatgtcgattaaatcctgtcctgctataaatgctacaacaacaactatcctaaatccgataattccagagtgacataaacaaatcttcaggttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtagcacctgtTTAAAGAGGCATCATCTCTAAGTCTGATAGTT--TTAGAAT-AA-----AA-T-ATTTAAC-ACTGATTATTTAAATGCTACCATATAAATAAAACTATTTTATGAACTTT-----TTGTTCT-GAAAAATGTGTATTTTTTTC-TGCT------TCTG----------TAATGCATGTTTTACAGTTAGAAT-GTG--GTG-------------TTGTTGT-TGTCGATTAAATCGTGTCCCGCTCTAAA----TACAACAACAAC----ATCCTAA
gi|4 : tGCTC--TA-AAT---AC--A--A---CAACAAC-ATCCTAAATACGATAATTCCTGAGTGACAATAATACATTTTC-------GAATTatacgataattcctgagtgacaataatacattttcgaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacacaccaattgtttcaagttacatgggtttctttcagtggacataaaatgtataggggaggcctcttta
gi|4 : tttaaagaggcatcatctctaagtctgatagttttagaataaaatatttaacactgattatttaaatgctaccatataaataaaactattttatgaactttttgttctgaaaaatgtgtatttttttctgcttctgtaatgcatgttttacagttagaatgtggtgttgttgttgtcgattaaatcgtgtcccCACACCA--ATTGTTTCA-AGTTACATGGGTTTCTTTCAG-----------------------------------------TGGACATAAA---ATGTATAGGGGAGGCCTCTTTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataacacaccaattgtttcaagttacatgggtttctttcagtggacataaaatgtataggggaggcctcttta
gi|5 : tttaaagaggcatcatctctaagtctgatagttttagaataaaatatttaacactgattatttaaatgctaccatataaataaaactattttatgaactttttgttctgaaaaatgtgtatttttttctgcttctgtaatgcatgttttacagttagaatgtggtgttgttgttgtcgattaaatcgtgtcccgctctaaatacaacaacaacatcctaaatacgataattcctgagtgacaataatacattttcgaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataaCTATTTTATGAACTTT-----TTGTTCA-GAAACATGTG--TTCTTTTC-TGTT------TCTG----------TAATGCATGTTTTA----CAGAAT-ATG--GTG-------------TGGTTGT-TTTCGATTAATTTGCGTCCCGCTCTAAATGC-T---------ACAACTATCCTGAATCCGATA-ATTCCT----G--A--GCGACAATAA---TAAATC
gi|5 : GCTC--TA-AATGCTAC--A--A---------CTATCCTGAATCCGATAATTCCTGAGCGACAATAATAAATCTTT-------GGATTTTCGGT---AAT----------CACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAACACATGTT-GTTGTAGAAAA-TTGCACCT--ATTTCTTCA-AGTTATATGGGTTTCTTTCCGA----CTAtttggattttcggtaatcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtaacacatgttgttgtagaaaattgcacctatttcttcaagttatatgggtttctttccgactaa
gi|6 : ctattttatgaactttttgttcagaaacatgtgttcttttctgtttctgtaatgcatgttttacagaatatggtgtggttgttttcgattaatttgcgtcccCAGAAG-GTGAAGTA-------------TTGTTAT-TGACTACTTTATTGCACCCTGATCTAAAT---T-------CAACAAC-------AGC-----------------A--A----AACAAATTT-----ATCCGATCATTCTCTATT----ATAACAAATCTTT-------GAATTTCCCGTTTCAATGGAAGGCATGCATTCAGCGTTTTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-T-GTTGTAGAA-------ACTT--ATTTA-TCACAGTTATATGATTTTCTTTCCGA----CTACG-----T--------GCAATTGGATCATGTCTTAGATAT-GC---CTTTATAAGGGGGGCCACTTTAAAa
gi|7 : GATGTATCATCTATAAGTCTGATA-TT--TTAGAAA-AA-----AG-T--TATAAT-A-TGATTATTATAATGTAATCCTGT-AATAAAGATATTTCATGAACTTG-----TTATTT----AACATGTC--TT-TTTTC-TGTT------TTTC----------TAATATG-ACTTTGCAGTCAGAAT-GTAAAGTGAGGTGTCCCCGTCTTCTTAC-TGTTACTT-TATAGTGCTCTATTCTGAAGAG-TACAACAGCAACc
gi|8 : aaccaaaattcagtctttatatactgccaatcaatattcatTTAAAGAAGCATTACATATAAGTCCGATATTT--T-AGGAT-AT-----AA-T-ATTTAAC-AATGATTATTTAAATGCTATCATATAAGTAAAGCTAGTTTATGAACATT-----TTGTTCA-GAAACATGTG--TTCTTCTC-TGCTTCTAGATCTG----------TAATGCGTGTTTTACAGTCAGAAT-GGGAAGTG-------------TTG-TG---GTCGAATAAATAGCGTCCCGCTCTAAATCC-TAcattcaaactagtctgatacttctcttctgaatgc
gi|8 : ATCCTAAATCCGATAATTCCCGAGCGACAAaatccgataattcccgagcgacaa
gi|9 : ttaaagaagcattacatataagtccgatattttaggatataatatttaacaatgattatttaaatgctatcatataagtaaagctagtttatgaacattttgttcagaaacatgtgttcttctctgcttctagatctgtaatgcgtgttttacagtcagaatgggaagtgttgtggtcgaataaatagcgtcccgctctaaCATCACCTATAACTCCCA-GTTTCATTAAAAT-AATGATTAA-TCATTAAACTAATGATTATT---ATATT-TC-TGTATATAAAACTATTTTGTGAACTTTATATGTTATT----AAACATGT--------------CT------TGTG----------TTATG---ATATGACGGTCA-AATGGCGAAATG-------------TCA-TGTCTGTCTATTTAATTGCACCCCGTTATAAA-GCATACACCA