lowQualScore : 1 1 222 333333333333333333333333333333 555555555555555555555555555555555555 1
lowQualScore : 4 7 8 0 3 22 1 1 22 3333 22 888888 222 1 55 000000000000000000000000000000 4444 333333333333333333333333333333333333 444 2 4 4444 5 0 1 1 66 5 999999 4444 1 5
lowQualScore : . . . . . .. . . .. .... .. ...... ... . .. .............................. .... .................................... ... . . .... . . . . .. . ...... .... . .
lowQualScore : 2 1 4 1 5 44 7 7 44 7777 44 777777 000 6 88 000000000000000000000000000000 7777 666666666666666666666666666666666666 777 5 9 3333 7 6 7 7 66 8 555555 0000 9 2
consensus : NNTATAGGGTTAAGTATACTGTAATTTTGAAATT-T--GCG-A-CCGT--A----T--A------TGA-GGTTTTTA-ATGGTCGCAAAT--TT-----------TT-------TTTAA----CGGC---------------GACA-CCGAA---GGTGGAGCC---GTTA-AAACAA--A-TTTGCGACCAT-TA-AAAACC-TCA------TA----TACGGT-CGCAAATTTCAAAA
Reference ( gi|1 ) : ATTATAGGGTTAAGTATATTGTGATTTTGTAAAT-T--GCG-A-CCGT--A----T--A------TGAGGGTTTTTA-ATGACCATACAT--TT-----------TC-------TTTAA----CGGC---------------GACA-CTGAA---GGTGGGGTC---GTTA-AAATAA--A-TTTGCAATCAT-TA-AAAACT-TTA------TA----TACGGT-CGCAAGTTTCAAAA
gi|17 : TAAAGGTTTAATTATACTGTAATTT-GAAATT-T--GCG-A-TTGT--T----T--A------TGA-GGTTTTCA-ATGGTCACA
gi|2 : ATAGGGTTAAGTATACTGTTATTTTGAAATT-T--GCA-A-CCAT--A----T--G------TGA-GGTTTTTA-ATAGTCACAAAT--TT-----------TCT------TTTAA----CAGC---------------AACA-CCGAA---AGCGGAAAT---GTTA-AAACAA--A-TTTGC--------G-AAAACC-TCATAATATTA----TACGGT-CACAAATTTCAAA
gi|12 : ATAGGGTTAAATATACTGTAATTTTGAAATT-T--GC--A-CCGT--A----T--A------TGAGGA-TTTTG-ATGACCTCA-AT--TT-----------CT-------TTTAA----CGGC---------------GACA-C
gi|10 : ATAGGGTTAAGTATACTGTTATTTTG-AAATCT--GTG-A-TCGT--ATAATT--A------TGA-GGTTTGTA-ATGGCCGCACAT--TT-----------T--------TTAAA----CGGC---------------GAC
gi|5 : TAGGGTTGGGTATACTGTGATTTAGAAATT-T--GCG-A-CCGT--A----T--A------TGA-GGTTTTAA-ATGGTCGCAAATGATT-----------TT-------TTAAA----CGGC---------------GACA-CCG-------------C---GT--------------------CCAT-TA-AAAATA-TCA------TA----TACGGT-GGCAAATTTCAAAA
gi|18 : TAGGGTTAAATATTCTGTAATTTTGAAATT-T--GCA-A-CCGT--A----T--A------TGA-GTTTTTTA-ATGtgactgtaa
gi|13 : gcaacTAGGGCTAAATATACT-TAATTTT-TGAAT-TTTGCG-A-CCGT--A----T--A------TGA-TTTTTTTA-ATGGTCGCAAAT--AT-----------T--------TTTAA----
gi|16 : TATGGTCAAGTATACAGTAATTATGCAATT-T--GTG-A-CCAT--G----T--A------TGA-GGTTTTTG-ATGATTACAAAT--a
gi|15 : TACGGTTGAAAGTACTGTAATTTTG-AAATGT--GCG-A-CCAC--A----T--C------TGA-GGTGTTTA-ATGATCGTAAAT--gtgtaa
gi|4 : AAGATTTAGTATACTGTAATTTTAAAATT-T--GAA-A-CTGT--A----T--AATTA--TGAGG-TTTTTA-ATCATCACA-AT--TT-----------TT-------TTTAA----CTGT---------------GACACCCGAA---GATGGAGCT---GTTA-AAACAG--A-TTTGCAATTAT-TA-AAAACgtgttaa
gi|14 : aataAAGGTTAAGTATACTGTAATTTTGAAATT-T--GCA-A-CTAT--A----TTCA------T-----TTTTTA-ATAGTCCCAAAT--GT-----------TT-------TTTAA----TGGcacat
gi|3 : GGGTTAAGTATAC---AATTATGAAATT-T--GCA-A-CCAT--A----T--A------TGAGACTTTTTA-ATGATCGCAAAT--TTGTTTTAATGACTCCACCTTATTTAA----TGGC---------------GACA-CCGAA---GATGGAGCC---GTTA-AAAC-A--A-TTTGTGATCAT-TA-AAAAC
gi|7 : GGGTTAAGTGTACTGTTATTTTGAAATT-T--GCG-A-CCGT--A----T--G------TGAGG--TGTTATATGGTC----------------------------------G----CGGC-------------------------------GGAGCC---GTGA-AAACAA--T-TTTGCGGTAAT-T--AAAACC-TCA------TA----ATTGGT-GGCAAATTTCAAAatctc
gi|11 : tGGGTTAGGTATGCTGTAGTTTTG-AGAC-T--ACGGA-CCGT--A----T--A------TG-TGTTTTTTA-ATGGTCGCA-AT--TG-----------TT-------TATAA----CAGC---------------GACA-C
gi|6 : ttaatTTAATTATATTGTAATTT-GAAAAT-T--TAA-AGCTGT--A----T--A------TGA-GGTGTTTA-TTGGTCACA-AT--TT-----------TC-------ATAAA----CGGC---------------GAC--CCGAA-----------C--------AAACAA-----TTGCGAACTT-TA-AAAAAT-T
gi|9 : aatacaaAAGTTTACTGTAATATTGAAATT-T--GCG-A-CCGT--A----T--A------TGA-GGTTTT----TGACCATatgaaagccacacat
gi|19 : aaaagggttaagtttactgtaataAGTATATTGTAATACT-----T-T--GCG-A-CCGT--A----T--A------CGA-GGTATTTA-ATGATCACACCC--TT-----------TC-------Ttaaaaacctcatatactgtcaaaaatttcaaaa
gi|5 : GTCATTTTGAAATT-T--GCC-A-CCGT--A----T--A------TGA-------------------TAT--TT-----------T----------TAA----TGG-----------------ACG-C-------GGTGTCGCC---GTTT-AAAAAATCA-TTTGCGACCAT-TT-AAAACC-TCA------TA----TACGGT-CGCAAATTTCTAAA
gi|9 : tagggttgggtatactgtgaTTTTGAAATT-T--TTG-A-CAGT--A----T--A------TGA-GGTTTTTA-ATGGTCAtgtaa
gi|2 : aaaagggttaagtttactgtaataaagtttactgtaatattgaaatttgcgaccgtatatgaggttttTTTGAAATT-T--GTG-A-CCGT--A----T--AATATTATGAGG--TTTT-------CGCAAAT--TT-----------GT-------TTTAA----CATT---------------TCCG-CTTTC---GGTGTTGCT---GTTA-AAAGAA--AATTTGTGACTAT-TA-AAAACC-TCA------CA----TATGGT-TGCAAATTTCAAAA
gi|7 : atagggttaagtatactgttaTTTGAAATT-T--GCC-A-CCAA--T----T--A------TGAGG--TTTTA-ATTACCGCAAAA--TT-----------GT-------TTTCA----CGGC---------------
gi|8 : tgggttaagtgtactgttattttgaaatttgcgaccgtatgtgaggtgttatatggtcgcggcggaTTTGAAATT-T--TTG-A-CCGT--A----T--A------TGATG-TTTATA-AAGATCGCAAAT--TT-----------GT-------TTTAA----CGGT---------------GTCA-CCGA
gi|8 : attgcgctggttaatatagggttaaatgtatgatgtttttaatggAT-T--GCG-C-TGGTTAA----T--A------T-AGGGTTA--A-ATG--TATG-AT--GT-----------T--------TTTAATGGTCGGT---------------GACA-C---------------C---GTTA-AAACAA--A-TTTGCGATCTT-TA-TAAACA-TCA------TA----TACGGT-CAAAAATTTCAAA
gi|4 : GGTTTTTA-ATAATTGCAAAT--CT-----------GT-------TTTAA----CAGC---------------TCCATCTTCG---GGT---GTCACAGTTA-AAA-AA--A-ATTGTGATGAT-TA-AAAACC-TCATAAT--TA----TACAGT-TTCAAATTTTAAAA
gi|3 : aataaagatttagtatactgtaaGTTTTTA-ATGATCACAAAT--TG-----------T--------TTTAA----CGGCTCCATCTTCGGTGTCGCCA-TTAAATAAGGTGGAGTC---ATTA-AAACAA--A-TTTGCGATCAT-TA-AAAAGTCTCA------TA----TATGGT-TGCAAATTTCATAAacat
gi|12 : gggttaagtatacaaGCC---GTTA-AAAGAA--A-TT-GAGGTCAT-CA-AAATCC-TCA------TA----TACGGT--GCAAATTTCAAAAatctc
gi|10 : atagggttaaatatactgtaaGCC---GTTT-AAA-AA--A-TGTGCGGCCAT-TA-CAAACC-TCA------TAATTATACGAT-CACAGATTTCAAAAgacac
gi|14 : atagggttaagtatactgttaC---ATTA-AAAAAC--A-TTTGGGACTAT-TA-AAAAAT-GAA------TA----TA--GT-TGCAAATTTCAAAAgac
gi|11 : aaggttaagtatactgtaa---GTTATAAACAA-----TTGCGACCAT-TA-AAAAAC-ACA------TA----TACGGTCCGT-AGTCTCAAAAg
gi|13 : ttaatgggttaggtatgctgtagTTA-AAA-AT--A-TTTGCGACCAT-TA-AAAAAA-TCA------TA----TACGGT-CGCAAAATTCAAAAagcgacac
gi|15 : tagggctaaatatacttaatAACAC--A-TTTACGATCAT-TA-AACACC-TCA------GA----TGTGGT-CGCACATTTCAAAAa
gi|3 : tacggttgaaagtactgtaaAA--A-TTTGCAACCATATATGAGACT-TTT------TA-----ATGAT-CGCAAATTTaa
gi|9 : gggttaagtatacaattatg-TTTTTAATGGT-CA-AAAACC-TCA------TA----TACGGT-CGCAAATTTCAAgttttaatgactccaccttatttaatggcgacaccgaagatggagccgttaaaacaatttgtgatcattaaaaacatctc
gi|9 : aaaagggttaagtttactgtaataaagtttactgtaata-TTTG--ACCAT-TA-AAAACC-TCA------TA----TACTGT-CAAAAATTTCAAAAcctcatatactgtcaaaaatttcaaaa
gi|19 : aaaagggttaagtttactgtaataaagtttactgtaatattgaaatttgcgaccgtatatgaggttTGTGATCAT-TA-AATACC-TCG------TA----TACGGT-CGCAA
gi|17 : agtatattgtaatactTGTGACCAT-TG-AAAACC-TCA------TA----AACAAT-CGCAAATTTCAAAccctttct
gi|7 : taaaggtttaattatactgtaaGCGACCAT-AT-AACACC-TCA------CA----TACGGT-CGCAAATTTCAAAA
gi|18 : tgggttaagtgtactgttaGCAACCAT-TA-AAAAAC-TCA------TA----TACGGT-TGCAAATTTCAAAAggcggagccgtgaaaacaattttgcggtaattaaaacctcataattggtggcaaatttcaaa
Alignments
lowQualScore : 222222222222222222 111111111 222222
lowQualScore : 2 2 4444 4444 4 4 33 3 3 222222222222222222 4 666666666 0 3 1 5 99 1 1 333333 2
lowQualScore : . . .... .... . . .. . . .................. . ......... . . . . .. . . ...... .
lowQualScore : 0 0 2222 2222 0 6 77 1 1 444444444444444444 0 999999999 2 1 4 1 99 4 0 000000 5
consensus : NNTATAGGGTTAAGTATACTGTAATTTT-GAAATT-TGCGACCGTA----TA----TGAGG-TTTTTAATGGTCGCAAAT--TT-T-TTT-----------------TAACGGCGACA-CCGAAGGCGGAGCCGTTAAAACAAATTTGCGATCATTAAAAACCTCA------TATACGGTCGCAAATTTCAAAA
Reference ( family-1213 ) : NNTATAGGGTTAAGTATACTGTAATTTT-GAAATT-TGCGACCGTA----TA----TGAGG-TTTTTAATGGTCGCAAAT--TT-T-TTT-----------------TAACGGCGACA-CCGAAGGTGGAGCCGTTAAAACAAATTTGCGACCATTAAAAACCTCA------TATACGGTCGCAAATTTCAAAA
gi|1 : TATAGGGTTAAGTATATTGTGATTTT-GTAAAT-TGCGACCGTA----TA----TGAGGGTTTTTAATGACCATACAT--TT-T-CTT-----------------TAACGGCGACA-CTGAAGGTGGGGTCGTTAAAATAAATTTGCAATCATTAAAAACTTTA------TATACGGTCGCAAGTTTCAAAA
gi|10 : atATAGGGTTAAGTATACTGTTATTTT-GAAATC-TGTGATCGTATAATTA----TGAGG-TTTGTAATGGCCGCACA---TT-T-TTT-----------------AAACGGCGAC
gi|11 : GGGTTAGGTATGCTGTAGTTTT-GAGACTACG-GACCGTA----TA----TGTGT-TTTTTAATGGTCGC-AAT--TG-T-TTA-----------------TAACAGCGACA-C
gi|12 : ttaatATAGGGTTAAATATACTGTAATTTT-GAAATT-TGC-ACCGTA----TA----TGAGG-ATTTTGATGACCTC-AAT--TT-C-TTT-----------------TAACGGCGACA-C
gi|13 : TAGGGCTAAATATACT-TAATTTTTGAATTT-TGCGACCGTA----TA----TGATT-TTTTTAATGGTCGCAAAT--AT-T-TTT-----------------AAA
gi|14 : AAGGTTAAGTATACTGTAATTTT-GAAATT-TGCAAC--TA----TA----TTCAT-TTTTTAATAGTCCCAAAT--GT-T-TTT-----------------TAATGG
gi|15 : TACGGTTGAAAGTACTGTAATTTT-GAAATG-TGCGACCACA----TC----TGAGG-TGTTTAATGATCGTAAAT--
gi|16 : TATGGTCAAGTATACAGTAATTAT-GCAATT-TGTGACCATG----TA----TGAGG-TTTTTGATGATTACAAAT--gtgttaa
gi|17 : TAAAGGTTTAATTATACTGTAATTT--GAAATT-TGCGATTGTT----TA----TGAGG-TTTTCAATGGTCACAgtgtaa
gi|18 : TAGGGTTAAATATTCTGTAATTTT-GAAATT-TGCAACCGTA----TA----TGAGT-TTTTTAATGGTTGC
gi|19 : AGTATATTGTAAT------ACTT-TGCGACCGTA----TA----CGAGG-TATTTAATGATCACA
gi|2 : ATAGGGTTAAGTATACTGTTATTTT-GAAATT-TGCAACCATA----TG----TGAGG-TTTTTAATAGTCACAAAT--TT-TCTTT-----------------TAACAGCAACA-CCGAAAGCGGAAATGTTAAAACAAATTTGCG-------AAAACCTCATAATATTATACGGTCACAAATTTCAAAccctttct
gi|3 : GGGTTAAGTATAC---AATTAT-GAAATT-TGCAACCATA----TA----TGAGACTTTTTAATGATCGCAAAT--TTGT-TTTAATGACTCCACCTTATTTAATGGCGACA-CCGAAGATGGAGCCGTTAAAAC-AATTTGTGATCATTAAAAACATC
gi|4 : AAGATTTAGTATACTGTAATTTT-AAAATT-TGAAACTGTA----TAATTATGAGG-TTTTTAATCATCAC-AAT--TT-T-TTT-----------------TAACTGTGACACCCGAAGATGGAGCTGTTAAAACAGATTTGCAATTATTAAAAACCACA------Ttc
gi|5 : aataTAGGGTTGGGTATACTGTGATTTA-GAAATT-TGCGACCGTA----TA----TGAGG-TTTTAAATGGTCGCAAATGATT-T-TTT-----------------AAACGGCGACA-CCG----------CGT----------------CCATTAAAAATATCA------TATACGGTGGCAAATTTCAAAA
gi|6 : TTAATTATATTGTAATTTG-AAAATT-TAAAGCTGTA----TA----TGAGG-TGTTTATTGGTCAC-AAT--TT-T-CAT-----------------AAACGGCGAC--CCGAA-------C-----AAACAA--TTGCGAACTTTAAAAAtgactgtaa
gi|7 : aatacaaGGGTTAAGTGTACTGTTATTTT-GAAATT-TGCGACCGTA----TG----TGAGG-TGTTATATGGTCGC------------------------------------------------GGCGGAGCCGTGAAAACAATTTTGCGGTAATT-AAAACCTCA------TAATTGGTGGCAAATTTCAAAattatgaaagccacacat
gi|8 : tTTT-GAAATT-TTTGACCGTA----TA----TGATG-TTTATAAAGATCGCAAAT--TT-G-TTT-----------------TAACGGTGTCA-CCGA--------CCATTAAAA
gi|9 : attgcgctggttaatatagggttaaatgtatgatgtAGGGTTAAGTTTACTGTAAT
gi|9 : aaaAAGTTTACTGTAATATT-GAAATT-TGCGACCGTA----TA----TGAGG-TTTTTGAaaagtttactgtaatattgaaatttgcgaccgtatatgaggtttttgaccattaaaaacctcatatactgtcaaaaatttcaaaa
gi|9 : aaaagggttaagtttactgtaataTTTT-GAAATT-TTTGACAGTA----TA----TGAGG-TTTTTAATGGTCAAAAAccattaaaaacctcatatactgtcaaaaatttcaaaa
Alignments
lowQualScore : 222222222222222222 22222222222 111111
lowQualScore : 2 2 4444 4444 4 5 33 3 3 444444444444444444 4 66666666666 3 0 3 2 0 0 3 999999
lowQualScore : . . .... .... . . .. . . .................. . ........... . . . . . . . ......
lowQualScore : 1 1 2222 2222 0 9 77 1 1 222222222222222222 0 22222222222 1 1 4 0 5 1 0 222222
consensus : NNTATAGGGTTAAGTATACTGTAATTTT-GAAATT-TGCGACCGTA----TA----TGAGG-TTTTTAATGGTCGCAAAT--TT-T-TTT-----------------TAACGGCGACA-CCGAAGGCGGAGCCGTTAAAACAAATTTGCGATCATTAAAAACNTCA------TATACGGTCGCAAATTTCAAAA
Reference ( family-1213 ) : NNTATAGGGTTAAGTATACTGTAATTTT-GAAATT-TGCGACCGTA----TA----TGAGG-TTTTTAATGGTCGCAAAT--TT-T-TTT-----------------TAACGGCGACA-CCGAAGGCGGAGCCGTTAAAACAAATTTGCGATCATTAAAAACCTCA------TATACGGTCGCAAATTTCAAAA
gi|1 : TATAGGGTTAAGTATATTGTGATTTT-GTAAAT-TGCGACCGTA----TA----TGAGGGTTTTTAATGACCATACAT--TT-T-CTT-----------------TAACGGCGACA-CTGAAGGTGGGGTCGTTAAAATAAATTTGCAATCATTAAAAACTTTA------TATACGGTCGCAAGTTTCAAAA
gi|10 : atATAGGGTTAAGTATACTGTTATTTT-GAAATC-TGTGATCGTATAATTA----TGAGG-TTTGTAATGGCCGCACA---TT-T-TTT-----------------AAACGGCGAC
gi|11 : GGGTTAGGTATGCTGTAGTTTT-GAGACTACG-GACCGTA----TA----TGTGT-TTTTTAATGGTCGC-AAT--TG-T-TTA-----------------TAACAGCGACA-C
gi|12 : ttaatATAGGGTTAAATATACTGTAATTTT-GAAATT-TGC-ACCGTA----TA----TGAGG-ATTTTGATGACCTC-AAT--TT-C-TTT-----------------TAACGGCGACA-C
gi|13 : TAGGGCTAAATATACT-TAATTTTTGAATTT-TGCGACCGTA----TA----TGATT-TTTTTAATGGTCGCAAAT--AT-T-TTT-----------------AAA
gi|14 : AAGGTTAAGTATACTGTAATTTT-GAAATT-TGCAAC--TA----TA----TTCAT-TTTTTAATAGTCCCAAAT--GT-T-TTT-----------------TAATGG
gi|15 : TACGGTTGAAAGTACTGTAATTTT-GAAATG-TGCGACCACA----TC----TGAGG-TGTTTAATGATCGTAAAT--
gi|16 : TATGGTCAAGTATACAGTAATTAT-GCAATT-TGTGACCATG----TA----TGAGG-TTTTTGATGATTACAAAT--gtgttaa
gi|17 : TAAAGGTTTAATTATACTGTAATTT--GAAATT-TGCGATTGTT----TA----TGAGG-TTTTCAATGGTCACAgtgtaa
gi|18 : TAGGGTTAAATATTCTGTAATTTT-GAAATT-TGCAACCGTA----TA----TGAGT-TTTTTAATGGTTGC
gi|19 : AGTATATTGTAAT------ACTT-TGCGACCGTA----TA----CGAGG-TATTTAATGATCACA
gi|2 : ATAGGGTTAAGTATACTGTTATTTT-GAAATT-TGCAACCATA----TG----TGAGG-TTTTTAATAGTCACAAAT--TT-TCTTT-----------------TAACAGCAACA-CCGAAAGCGGAAATGTTAAAACAAATTTGCG-------AAAACCTCATAATATTATACGGTCACAAATTTCAAAccctttct
gi|3 : GGGTTAAGTATAC---AATTAT-GAAATT-TGCAACCATA----TA----TGAGACTTTTTAATGATCGCAAAT--TTGT-TTTAATGACTCCACCTTATTTAATGGCGACA-CCGAAGATGGAGCCGTTAAAAC-AATTTGTGATCATTAAAAACATC
gi|4 : AAGATTTAGTATACTGTAATTTT-AAAATT-TGAAACTGTA----TAATTATGAGG-TTTTTAATCATCAC-AAT--TT-T-TTT-----------------TAACTGTGACACCCGAAGATGGAGCTGTTAAAACAGATTTGCAATTATTAAAAACCACA------tc
gi|5 : aataTAGGGTTGGGTATACTGTGATTTA-GAAATT-TGCGACCGTA----TA----TGAGG-TTTTAAATGGTCGCAAATGATT-T-TTT-----------------AAACGGCGACA-CCG----------CGT----------------CCATTAAAAATATCA------TATACGGTGGCAAATTTCAAAA
gi|6 : TTAATTATATTGTAATTTG-AAAATT-TAAAGCTGTA----TA----TGAGG-TGTTTATTGGTCAC-AAT--TT-T-CAT-----------------AAACGGCGAC--CCGAA--C----------AAACAA--TTGCGAACTTTAAAAAtgactgtaa
gi|7 : aatacaaGGGTTAAGTGTACTGTTATTTT-GAAATT-TGCGACCGTA----TG----TGAGG-TGTTATATGGTCGC------------------------------------------------GGCGGAGCCGTGAAAACAATTTTGCGGTAATT-AAAACCTCA------TAATTGGTGGCAAATTTCAAAattatgaaagccacacat
gi|8 : tTG----TA----TGATG-TTTTTAATGGTCG-------------------------------------GTGACA-CCG------------TTAAAACAAATTTGCGATCTTTATAAACATCA------TATACGGTCAAAAATTTCAAA
gi|9 : attgcgctggttaatatagggttaaaAGGGTTAAGTTTACTGTAAT
gi|9 : aaaAAGTTTACTGTAATATT-GAAATT-TGCGACCGTA----TA----TGAGG-TTTTTGAaaagtttactgtaatattgaaatttgcgaccgtatatgaggtttttgaccattaaaaacctcatatactgtcaaaaatttcaaaa
gi|9 : aaaagggttaagtttactgtaataTTTT-GAAATT-TTTGACAGTA----TA----TGAGG-TTTTTAATGGTCAAAAAccattaaaaacctcatatactgtcaaaaatttcaaaa
Alignments
lowQualScore : 222222222222222222 22222222222 111111
lowQualScore : 2 2 4444 4444 4 5 33 3 3 444444444444444444 4 66666666666 3 0 3 2 0 0 1 999999
lowQualScore : . . .... .... . . .. . . .................. . ........... . . . . . . . ......
lowQualScore : 1 1 2222 2222 0 9 77 1 1 222222222222222222 0 22222222222 1 1 4 0 5 1 0 222222
consensus : NNTATAGGGTTAAGTATACTGTAATTTT-GAAATT-TGCGACCGTA----TA----TGAGG-TTTTTAATGGTCGCAAAT--TT-T-TTT-----------------TAACGGCGACA-CCGAAGGCGGAGCCGTTAAAACAAATTTGCGATCATTAAAAACNTCA------TATACGGTCGCAAATTTCAAAA
Reference ( family-1213 ) : NNTATAGGGTTAAGTATACTGTAATTTT-GAAATT-TGCGACCGTA----TA----TGAGG-TTTTTAATGGTCGCAAAT--TT-T-TTT-----------------TAACGGCGACA-CCGAAGGCGGAGCCGTTAAAACAAATTTGCGATCATTAAAAACNTCA------TATACGGTCGCAAATTTCAAAA
gi|1 : TATAGGGTTAAGTATATTGTGATTTT-GTAAAT-TGCGACCGTA----TA----TGAGGGTTTTTAATGACCATACAT--TT-T-CTT-----------------TAACGGCGACA-CTGAAGGTGGGGTCGTTAAAATAAATTTGCAATCATTAAAAACTTTA------TATACGGTCGCAAGTTTCAAAA
gi|10 : atATAGGGTTAAGTATACTGTTATTTT-GAAATC-TGTGATCGTATAATTA----TGAGG-TTTGTAATGGCCGCACA---TT-T-TTT-----------------AAACGGCGAC
gi|11 : GGGTTAGGTATGCTGTAGTTTT-GAGACTACG-GACCGTA----TA----TGTGT-TTTTTAATGGTCGC-AAT--TG-T-TTA-----------------TAACAGCGACA-C
gi|12 : ttaatATAGGGTTAAATATACTGTAATTTT-GAAATT-TGC-ACCGTA----TA----TGAGG-ATTTTGATGACCTC-AAT--TT-C-TTT-----------------TAACGGCGACA-C
gi|13 : TAGGGCTAAATATACT-TAATTTTTGAATTT-TGCGACCGTA----TA----TGATT-TTTTTAATGGTCGCAAAT--AT-T-TTT-----------------AAA
gi|14 : AAGGTTAAGTATACTGTAATTTT-GAAATT-TGCAAC--TA----TA----TTCAT-TTTTTAATAGTCCCAAAT--GT-T-TTT-----------------TAATGG
gi|15 : TACGGTTGAAAGTACTGTAATTTT-GAAATG-TGCGACCACA----TC----TGAGG-TGTTTAATGATCGTAAAT--
gi|16 : TATGGTCAAGTATACAGTAATTAT-GCAATT-TGTGACCATG----TA----TGAGG-TTTTTGATGATTACAAAT--gtgttaa
gi|17 : TAAAGGTTTAATTATACTGTAATTT--GAAATT-TGCGATTGTT----TA----TGAGG-TTTTCAATGGTCACAgtgtaa
gi|18 : TAGGGTTAAATATTCTGTAATTTT-GAAATT-TGCAACCGTA----TA----TGAGT-TTTTTAATGGTTGC
gi|19 : AGTATATTGTAAT------ACTT-TGCGACCGTA----TA----CGAGG-TATTTAATGATCACA
gi|2 : ATAGGGTTAAGTATACTGTTATTTT-GAAATT-TGCAACCATA----TG----TGAGG-TTTTTAATAGTCACAAAT--TT-TCTTT-----------------TAACAGCAACA-CCGAAAGCGGAAATGTTAAAACAAATTTGCG-------AAAACCTCATAATATTATACGGTCACAAATTTCAAAccctttct
gi|3 : GGGTTAAGTATAC---AATTAT-GAAATT-TGCAACCATA----TA----TGAGACTTTTTAATGATCGCAAAT--TTGT-TTTAATGACTCCACCTTATTTAATGGCGACA-CCGAAGATGGAGCCGTTAAAAC-AATTTGTGATCATTAAAAACATC
gi|4 : AAGATTTAGTATACTGTAATTTT-AAAATT-TGAAACTGTA----TAATTATGAGG-TTTTTAATCATCAC-AAT--TT-T-TTT-----------------TAACTGTGACACCCGAAGATGGAGCTGTTAAAACAGATTTGCAATTATTAAAAACCACA------tc
gi|5 : aataTAGGGTTGGGTATACTGTGATTTA-GAAATT-TGCGACCGTA----TA----TGAGG-TTTTAAATGGTCGCAAATGATT-T-TTT-----------------AAACGGCGACA-CCG----------CGT----------------CCATTAAAAATATCA------TATACGGTGGCAAATTTCAAAA
gi|6 : TTAATTATATTGTAATTTG-AAAATT-TAAAGCTGTA----TA----TGAGG-TGTTTATTGGTCAC-AAT--TT-T-CAT-----------------AAACGGCGAC--CCGAA--C----------AAACAA--TTGCGAACTTTAAAAAtgactgtaa
gi|7 : aatacaaGGGTTAAGTGTACTGTTATTTT-GAAATT-TGCGACCGTA----TG----TGAGG-TGTTATATGGTCGC------------------------------------------------GGCGGAGCCGTGAAAACAATTTTGCGGTAATT-AAAACCTCA------TAATTGGTGGCAAATTTCAAAattatgaaagccacacat
gi|8 : tTG----TA----TGATG-TTTTTAATGGTCG-------------------------------------GTGACA-CCG------------TTAAAACAAATTTGCGATCTTTATAAACATCA------TATACGGTCAAAAATTTCAAA
gi|9 : attgcgctggttaatatagggttaaaAGGGTTAAGTTTACTGTAAT
gi|9 : aaaAAGTTTACTGTAATATT-GAAATT-TGCGACCGTA----TA----TGAGG-TTTTTGAaaagtttactgtaatattgaaatttgcgaccgtatatgaggtttttgaccattaaaaacctcatatactgtcaaaaatttcaaaa
gi|9 : aaaagggttaagtttactgtaataTTTT-GAAATT-TTTGACAGTA----TA----TGAGG-TTTTTAATGGTCAAAAAccattaaaaacctcatatactgtcaaaaatttcaaaa
blockSeqs : T A TAAT ATTA C A GA G C AATGACTCCACCTTATTT C AAAGCGGAAAT T A A C TAATAT
blockSeqs : . . . . . A . . . A . AAGATGGAGCC T A A A .
blockSeqs : . . . . . A . . . T . AAGATGGAGCT T A A C .
blockSeqs : . . . . . A . . . T . GGCGGAGCC G T G A .
blockSeqs : . . . . . A . . . A . AAC T A A C .
blockSeqs : . . . . . A . . . T . C . . . A
blockSeqs : . . . . . A . . . T . . . . .
blockSeqs : . . . . . A . . . T .
blockSeqs : . . . . . A . . . A .
blockSeqs : . . . . . A . . . A
blockSeqs : . . . . . A . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . .
blockSeqs : . . .
blockSeqCons :
originalCons : NNTATAGGGTTAAGTATACTGTAATTTT-GAAATT-TGCGACCGTA----TA----TGAGG-TTTTTAATGGTCGCAAAT--TT-T-TTT-----------------TAACGGCGACA-CCGAAGGCGGAGCCGTTAAAACAAATTTGCGATCATTAAAAACNTCA------TATACGGTCGCAAATTTCAAAA
finalCons : NNTATAGGGTTAAGTATACTGTAATTTT-GAAATT-TGCGACCGTA----TA----TGAGG-TTTTTAATGGTCGCAAAT--TT-T-TTT-----------------TAACGGCGACA-CCGAAGGCGGAGCCGTTAAAACAAATTTGCGATCATTAAAAACNTCA------TATACGGTCGCAAATTTCAAAA
Alignments
lowQualScore : 222222222222222222 22222222222 111111
lowQualScore : 2 2 4444 4444 4 5 33 3 3 444444444444444444 4 66666666666 3 0 3 2 0 0 1 999999
lowQualScore : . . .... .... . . .. . . .................. . ........... . . . . . . . ......
lowQualScore : 1 1 2222 2222 0 9 77 1 1 222222222222222222 0 22222222222 1 1 4 0 5 1 0 222222
consensus : NNTATAGGGTTAAGTATACTGTAATTTT-GAAATT-TGCGACCGTA----TA----TGAGG-TTTTTAATGGTCGCAAAT--TT-T-TTT-----------------TAACGGCGACA-CCGAAGGCGGAGCCGTTAAAACAAATTTGCGATCATTAAAAACNTCA------TATACGGTCGCAAATTTCAAAA
Reference ( family-1213 ) : NNTATAGGGTTAAGTATACTGTAATTTT-GAAATT-TGCGACCGTA----TA----TGAGG-TTTTTAATGGTCGCAAAT--TT-T-TTT-----------------TAACGGCGACA-CCGAAGGCGGAGCCGTTAAAACAAATTTGCGATCATTAAAAACNTCA------TATACGGTCGCAAATTTCAAAA
gi|1 : TATAGGGTTAAGTATATTGTGATTTT-GTAAAT-TGCGACCGTA----TA----TGAGGGTTTTTAATGACCATACAT--TT-T-CTT-----------------TAACGGCGACA-CTGAAGGTGGGGTCGTTAAAATAAATTTGCAATCATTAAAAACTTTA------TATACGGTCGCAAGTTTCAAAA
gi|10 : atATAGGGTTAAGTATACTGTTATTTT-GAAATC-TGTGATCGTATAATTA----TGAGG-TTTGTAATGGCCGCACA---TT-T-TTT-----------------AAACGGCGAC
gi|11 : GGGTTAGGTATGCTGTAGTTTT-GAGACTACG-GACCGTA----TA----TGTGT-TTTTTAATGGTCGC-AAT--TG-T-TTA-----------------TAACAGCGACA-C
gi|12 : ttaatATAGGGTTAAATATACTGTAATTTT-GAAATT-TGC-ACCGTA----TA----TGAGG-ATTTTGATGACCTC-AAT--TT-C-TTT-----------------TAACGGCGACA-C
gi|13 : TAGGGCTAAATATACT-TAATTTTTGAATTT-TGCGACCGTA----TA----TGATT-TTTTTAATGGTCGCAAAT--AT-T-TTT-----------------AAA
gi|14 : AAGGTTAAGTATACTGTAATTTT-GAAATT-TGCAAC--TA----TA----TTCAT-TTTTTAATAGTCCCAAAT--GT-T-TTT-----------------TAATGG
gi|15 : TACGGTTGAAAGTACTGTAATTTT-GAAATG-TGCGACCACA----TC----TGAGG-TGTTTAATGATCGTAAAT--
gi|16 : TATGGTCAAGTATACAGTAATTAT-GCAATT-TGTGACCATG----TA----TGAGG-TTTTTGATGATTACAAAT--gtgttaa
gi|17 : TAAAGGTTTAATTATACTGTAATTT--GAAATT-TGCGATTGTT----TA----TGAGG-TTTTCAATGGTCACAgtgtaa
gi|18 : TAGGGTTAAATATTCTGTAATTTT-GAAATT-TGCAACCGTA----TA----TGAGT-TTTTTAATGGTTGC
gi|19 : AGTATATTGTAAT------ACTT-TGCGACCGTA----TA----CGAGG-TATTTAATGATCACA
gi|2 : ATAGGGTTAAGTATACTGTTATTTT-GAAATT-TGCAACCATA----TG----TGAGG-TTTTTAATAGTCACAAAT--TT-TCTTT-----------------TAACAGCAACA-CCGAAAGCGGAAATGTTAAAACAAATTTGCG-------AAAACCTCATAATATTATACGGTCACAAATTTCAAAccctttct
gi|3 : GGGTTAAGTATAC---AATTAT-GAAATT-TGCAACCATA----TA----TGAGACTTTTTAATGATCGCAAAT--TTGT-TTTAATGACTCCACCTTATTTAATGGCGACA-CCGAAGATGGAGCCGTTAAAAC-AATTTGTGATCATTAAAAACATC
gi|4 : AAGATTTAGTATACTGTAATTTT-AAAATT-TGAAACTGTA----TAATTATGAGG-TTTTTAATCATCAC-AAT--TT-T-TTT-----------------TAACTGTGACACCCGAAGATGGAGCTGTTAAAACAGATTTGCAATTATTAAAAACCACA------tc
gi|5 : aataTAGGGTTGGGTATACTGTGATTTA-GAAATT-TGCGACCGTA----TA----TGAGG-TTTTAAATGGTCGCAAATGATT-T-TTT-----------------AAACGGCGACA-CCG----------CGT----------------CCATTAAAAATATCA------TATACGGTGGCAAATTTCAAAA
gi|6 : TTAATTATATTGTAATTTG-AAAATT-TAAAGCTGTA----TA----TGAGG-TGTTTATTGGTCAC-AAT--TT-T-CAT-----------------AAACGGCGAC--CCGAA--C----------AAACAA--TTGCGAACTTTAAAAAtgactgtaa
gi|7 : aatacaaGGGTTAAGTGTACTGTTATTTT-GAAATT-TGCGACCGTA----TG----TGAGG-TGTTATATGGTCGC------------------------------------------------GGCGGAGCCGTGAAAACAATTTTGCGGTAATT-AAAACCTCA------TAATTGGTGGCAAATTTCAAAattatgaaagccacacat
gi|8 : tTG----TA----TGATG-TTTTTAATGGTCG-------------------------------------GTGACA-CCG------------TTAAAACAAATTTGCGATCTTTATAAACATCA------TATACGGTCAAAAATTTCAAA
gi|9 : attgcgctggttaatatagggttaaaAGGGTTAAGTTTACTGTAAT
gi|9 : aaaAAGTTTACTGTAATATT-GAAATT-TGCGACCGTA----TA----TGAGG-TTTTTGAaaagtttactgtaatattgaaatttgcgaccgtatatgaggtttttgaccattaaaaacctcatatactgtcaaaaatttcaaaa
gi|9 : aaaagggttaagtttactgtaataTTTT-GAAATT-TTTGACAGTA----TA----TGAGG-TTTTTAATGGTCAAAAAccattaaaaacctcatatactgtcaaaaatttcaaaa