lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111111 22222222222222222222 2222222 111 3333333333 1111111 11 2222222222222222 111111111111111111111111111111111111111111111111111111111111111111111111 1111 11111 333333333333333333 55555555555555555555555 1 111 1111 11 111 33333333333333333333 1111111 1 1 1 111111111 111111 111 6666666666666 11111 555555555555555555555555555555555555555555 3333333333 22222 222
lowQualScore : 9 999999 44 44 00000000000000000000 6666 1 2222222 3 444 2 2222222222 11 555 5555555 77 44 3 9999999999999999 8 77777 555555555555555555555555555555555555555555555555555555555555555555555555 3 0000 3 88888 999999999999999999 33 33333333333333333333333 6 6 2 3 3 000 2222 2 1 99 555555 3 444 44 6666 33333333333333333333 33 4 2 5 4 33 555 2222222 0 5 3 3 7777 3 44 3 3 1 666 33 000000000 2 33 5555 555555 666 2 66 777 2 2 44 2 33 2 3333333333333 77777 777777777777777777777777777777777777777777 77 2 8888888888 7 77777 333
lowQualScore : . ...... .. .. .................... .... . ....... . ... . .......... .. ... ....... .. .. . ................ . ..... ........................................................................ . .... . ..... .................. .. ....................... . . . . . ... .... . . .. ...... . ... .. .... .................... .. . . . . .. ... ....... . . . . .... . .. . . . ... .. ......... . .. .... ...... ... . .. ... . . .. . .. . ............. ..... .......................................... .. . .......... . ..... ...
lowQualScore : 5 555555 66 66 22222222222222222222 5555 5 6666666 1 000 9 9999999999 77 444 9999999 44 22 1 0000000000000000 2 11111 222222222222222222222222222222222222222222222222222222222222222222222222 1 3333 1 11111 111111111111111111 66 22222222222222222222222 2 5 8 3 3 222 1111 8 8 44 111111 6 555 22 6666 44444444444444444444 55 1 1 5 1 99 000 1111111 0 1 1 1 1111 3 66 7 6 3 333 44 000000000 5 44 7777 333333 333 7 33 111 7 7 99 9 99 9 2222222222222 33333 333333333333333333333333333333333333333333 99 5 0000000000 0 77777 333
consensus : NNTATATCAGGAAAAAAC-----GCT--ATA--AATGTCTTAAA-AA-----ATAAAATNATTTTT----AAAATGGATAAAAAGCATCTC---ATTATCATTA-ATAAAT--A-AA-TCCGAATGGTTTGGTA---TGTCAAA----T-CCACCAAAA-CGT--GA-CA----AAAT------C-GATATTTAA-----ATCGG--------A--------------G------TG-------GTAAAC-T-------AATCCC------C-----A-TTCTAA---AAATA-GA--C--AGCACTT-------AAAT----ACTGCTTGA-CGA--CC---NTCAC-------ATCGTCATTCGGACTCTTTCTAAG-ATGAAAC-A-A-TTT-T-ACNACGTGT-AA--ACC-TG-TA--TAACG--GATCAAATCGAAATCAAAATGAA----A-TC-AC-GT-N-AC-TCATTTAATACGTCA--CAAA---A-------TATGTTGCAATTTTAAGCGGG-AAA-TCTATTTTAGT----C-T--AACCTAGGCGCGTAGCCCAAGTTAGGAAA-TCC--CTTTTCAATA---------TAT-TATTTTGGCATG--TTTAAAT----AGA------TAT-CNT-TT--TGGCAATACG-G-GG-TC-AGT--GAGTA-TATA-------A----ATAGGCATGNTATATTGGAAAA---------A---------A---------A----------C-GGTTTTAA--AANTTTGAAT--GAA----ATTCCA--T--AAGA---AAACTGCATATTG
Reference ( gi|3 ) : ATTATATCAGGCAAAAAA-----GCT--ATA--AATGTCTTAAA-AA-----ATAAAATAACTTTT----AAAATGGATAAAAAGCATTCC---ATTATCATTA-ATAAAT--A-AA-TCCCAATGATTTGGTA---TGTCAAA----T-ACACCAAAC-CGT--GA-CA----CAGT------T-GATATCTAA-----ATTGG--------A--------------G------CG-------G--------------AATCTG------C-----A-TTCTAG---AAATA-GA--A--AGCACTG-------AAAT----GCTGCTTGA-TGA--AT---GTTAC-------ATCGTCGTTCGGACTCTTTCTACG-ATGAAAC-A-A-TTT-T-ACTACATGT-TA--ACC-TG-TA--CAACG--GATCAAACTGAAATCAAAATGTA----A-TT-AC-AT-C-AC-TTATTCAATGCATCA--CAAA---A-------TATGTTGCAACTTTAAGCAGG-AAA-TCTATTTTAGT----C-T--AACCTAGGCGCTTAGCCCAAGTAAGGAAA-CCC--CTTTTCAATA---------TAT-TATTTTGGCATG--TTTAAAT----AGA------TAT-CAT-TT--TGGCATTGTG-G-GA-TC-AGT--GAGTA-TATA-----A-A---AATAGGCTTGTCATATTGGAAAA---------A---------A---------A----------C-AGTTTTAA--AAGTTTGAATAGGAA----ATTACA--T--AAGA---AAACTGCATATTG
gi|1 : TATGTCAGGAAAAAAC-----GCT--ATA--AATGTCTTAAA-AA------TGAAATTATTTTT----AAAATAGTTAAAT-TCATCTC---TTTATCATTA-ATAAATTAA-AG-TCCGAAAGGCTTAGCA---TGTCAAA----T-CTACCAAAAACGT--GA-CA----AAAT------C-GTTATTTGA-----ATCGG--------A--------------G------TG-------GGA------------AATCCC------A-----A-TTCTAA---AAATA-GA--C--AGCACTT-------AAAT----ACAGCTAGA-CGA--TC---GTCAC-------ATCGTCATTCAGACTCTTTCTAAG-ATGAAAC-A-A-TTT-TTATTTAATGT-AA--ACA-TG-TA--TAACG--GATCAAACTGAAATCAAAATGAA----A-TC-AC-GT-G-AC-TCATTTAATACGTCA--CAAA---A-------TATGTCGCAATTTTAAGCGAG-AAA-TCTATGTTAGT----C-T--AACCTAGGCGCGTAGCCCAAGGTAGGAAA-TCC--CTTTTCAATATAGTACATGTAT-TATTTTGGCATG--TTTAAAT----ATT------TAT-CCT-TT--CAGCAATATG-G-G
gi|2 : aagggagTATATCAAGAAAAAAT-----GCT--TTA--AATGTTTTAAA-GC-----ATAGCATTATTTTT----TAAATGGATAAAAAGCAACTC---ATAATC---A-ATA-----G-AG-TCAGAATGGTTTGGTA---TATCAAA----TCCCCCCAAAA-CTT--GA-CA----AAAT------C-AATGTTTTA-----ATAGG--------A--------------GTTGAAATG-------A--------------AATCCC------CACTCTA-CTCTAA---AAATA-GA--C--AGCAGT----------ATTTTAACTGCTTGG-TAA--CC---ATCAC-------ATCTTCATTCAGACTCTTTCTAAA-A-AAAAA-A-A-CT-----GTACGTGTAAA--ACC-TA-CA--TGATG--AAACAAATTG-AATTAAAAT-CA----A--C-AT-AT-G-AT-TCATTTGATATATCG--C-AG---A-------TGTCTTTGAAATTTAAGCGGG-AAA-TTTGTTATAGT----C-T--AACCTTGGCGCATAGCCCAAGTTAGGAAA-CCC--CATTTCATTA---------TTT-TATCTTGGCATG--TTTAAAA----ATA------TAT-TCT-TT--AGGCGATATGAG-GA-TG-A-T--GATTATTAT-------------ATAGGCATGGTATATTTGAcacaaatagaataagtagacatatctttcggggggtggggtgggggggggggggaatttttatagccaaatttaatttttttaaaatcctgataaattcccttaa
gi|5 : gaaTATATCAGGAAAAATC-----GTT--ATT--ACTGTTTTTAA-AA-----A------AA---TT----AAACTTGAAACAAAGCAATTC---ATTATCATTA-ATAATT--AGAA-TTTGAATGGTTTGGTT---TATCAAA----T-CCACCAAAA-CTTAAGA--A----TAAA------C-AACATTTTT-----ATCGA--------G--------------G------TG-------GTGAACTTT------AATC-A------A-----A-TTCTAA---AAATA-GA--T--AGCATTG-------AAAT----ACTGCTTGA-CGA--CC---CTCAA-------ATCTTTATCCGGACATTTTTTGAG-ATGAAAC-ATA-TTA-A-ACAATATGT-AA--ACA-AG-TATTTAA----GATCGAATCGAGGCCAAAATG-----------AC--T-C-AT-CTGT----TACGTCC--CGAA---A-------CACGTTGCAAATTTAAGTCGG-AA---CAATTTTAGT----C-T--AATTCAGACGCGCAGGCCTAGTTAG---A-TCTAACTTTTCAATG---------TAT-T-TTTT-ACATG--TTTAAGT----AGA------TGT-TTT-TTA-TAGCAATACG-G-GG-TC-AGTAAGAATA-TATA-----C-A---TGTAGGCCTGGTATATTAGAGCA---------A---------A---------ggggatgggagggggggatgtttaaagctaatttgaaaaaaaatttgaaaaatcctgatatgctccctttaa
gi|12 : caaaggtcgTATATCAGGAAAAAAT-----GCT--ATA--CATATCTTAAA-TA-----ATAAGGTAATTTTT----AAAATGAATAAACAGCATCTC---CTTACTATTA-ATAAAT--A-AA---------ATTTGGTA----ATTAAA----T-CCATCAAAA-CAT--GA-CA----AAAT------C-GATATCCAA-----Agtgatgtattcaatatacttcctttaataaataattaaatat
gi|9 : gggaaTATGTCTGGGAAAAAT-----GCT--ATA--AATGTCTAAAA-AA-----ATAAAAT----------------GAATACAAAGAAT--C---ATTATTGTTAGATACAA--A-AG-TT----TGTTTT-------TTTCAAA----T-CCATCAAAT-CAT--GA-CAAAAACATTATTTAGT-GGTA---AA-----ATTAA--------A--------------A------TG-------A--------------AACCCC------C-----A-TTTT-G---AAATAAGA--C--CGCGC-G-------TAA------CTGTTTGA--GATGAT---TTCAC-------CTGTTCATTATCACTTTTTCTAAG-ATAAAAC-A-AATTC-T-GCAATATGT-AA--AAT-TACTA--AGACT--GATCATATCAAAATTAAAATGAA----A-T--ACTGT-G-AT-TTATTTGATGCATTA--CAGTCTTA-------TATCTTTCAATTTTAAGCAGG-AAA-TTTATTTTAGT----C-T--GA-----GTGAGTAGGCCAAGTA----------------CCGGTA---------TAT-TATTTT-GTATG--TTTAAAT----AGA------TAGATATATTAATGGCAATACG-G-GA-TG-AGT--GAGTA-T--------------AAT---------ATATTGGAAAA---------ACTTGTTTTTG---------C----------C-AGTTTTAA--ATTTTTGAAgtagtggtaaacttgaaacgacatttaaatactacaaaattacgtggctcgtataatacgtcacaaaatatgttgcaattttaagcgggaaatctattttagtctaacctaggcatgtaacccaagttaggaatccccttttcaatatagtattttgaaatgtttaaatagatattcttacgacaacttgggagtcggtgagtatgtttaggcatggtatatt
gi|18 : aaggcagTATATCAGAAAAAAAAACAACGCT--ATA--AATGTCTTAAA-AA-----ATAAAATAATTATT----AAAATGAATGAAAGGCATCTC---ATTATCATTA-ATTAATA-A-AA-ACCGAATAGTTTATTA---TGTCAAA----T-CCACAATAA-CGT--GA-CA----AAAT------T-GATATCTAATTTTTAGTGGTAAACTTTA--------------A------TG-------A--------------AATCCC------C-----A-TTCTTA---AAATA-GA--C--AGCACTT--------AAT----ACTGCTTGA-T------------------------GCCATTCGGA--CTTTCTATATATG--GC-A-A-TTaaa
gi|21 : agggagTATATGAGG-AAAAAT-----GCT--ATA--CAAGTATTAAA-G------------TTATTTTT----AAAATGGATAAAA-------------TATCATTA-ATAAAT--A-AAATCCGAATGGTTTGGTA---TGTCAAA----T-ACAATAAAA-TGT--GA-CA----AAAT------T-TATATCTGA-----ATTGG--------A--------------G------TGGTATATTG--------------AGTCCGA-----T-----A-TTTTAGGATAAAT--CA--ATTAACACTGATTATTTAAAT----GCTGTCATA-TAA--ATAAAGTTATTTAAAGAACTGTTGTTCGG
gi|24 : TATATTGGGAAAACAC-----GCT--ATA--AATGTCTGAAA-AA------------------T----AAAATGGATAAAAAGCA-TCTATGATTAGCATTA-ATTAGG--A-AC-TCCC
gi|15 : gggagATATCAG--AAAAAA-----ATT--ATATAAATGTTTTAAA-AAGAACAACAAACTAATTATT----GAAATTGATAAAAAGAATATT---ATTATCATTA-ATAAAG--A-AA---------ATCTG-----------AA----T-TCACCAAAA-TGT--GA-CA----AAAG------T-GAT-TTTAA-----ATTGG--------A--------------G------TG-------GTAAACTTGAAACGAAATCAC------C-----A-TTCTAA---AAATA-GA--C--AGCAATT-------AACA----ACTGTTTGA-TGA--TC---TTCAC-------ATCGTCATTTGGACTCTTTCTAAG-ATGAAAC-A-A-TTTAT-ACTACGTA--TA------TG-TA--TTATG--GATCAAATTGAAATCAAAATGAA----A-TC-AC-tcttcaatattctattttggcatgtttaaa
gi|13 : aagagagcATCAGG-AATAAA-----TCTCTATA--AATGTATT------------TAAAATTATTTTTTTTTAAAACA-ATAGAAATCACCTC---ATTATCATAA-CTAAAT--A-AA----------------------TCGA----------CCAAAA-CGT--GA-CA----AAGT------C-TATATTTTG-----ATCTG--------A--------------G------TG-------GTAAACTTAAAACAAAATCTC------C-----A-TTCTAA---AAATA-GT--C--AGCACTT-------AAAT----AATGATTAA-CGA------------------------CCTTCACACTCTTTCTATG-ATGAAAC-ATA-TTC-T-ACACCATAT-AA--ACC-AG-TA--TGATG--GATC---C---AATCAAAATGAA----A-TC-AA-GT-G-AC-TCATTTGACAGGTCA--TAAA---ACTACTTGTATGTTGCAA----------G-GAA-TCTATTTg
gi|16 : taaaggttgcaaAGGGAAAGCAT----GCT--AGA--AATGTCTTAAA-AA-----ATAAAATAATCATT----AAATTGGAT-AAAATCATCTA---ATTATTATTA-ATAAATC-A-AA-TTAAAATGGCTTGGTA---TGGCAAA----T-CCACCAAAA-CGT--GA-CA----AAAT------C-AATATTTAA-----GTTGA--------A--------------G------TG-------GTAAACATGAAACAAAATCCC------C-----A-TTCTAA---ATATA-TA--C--AGCACTT-------AACT----ACTGC-----TGA--AT------------------GTCATTCAGACTCTTTTTAAG-ATGAAAT-A-GTTTT-T-AATATGTGT-AA--ACC-TG-TA--
gi|6 : tgttaaAAAT-----GCT--TTA--TCTGTCTCAAATAA-----ATAAAATTA-TTTT----AAAATGGATATA--GCATCTC---ATTATCAT-------A---A-AA-TTCACTTGGTTTGGTA---TGTCAAA----T-CAACCAAAA-CCT--GG-CA-----ATT------TCGATAT-TAA-----ATTGG--------ACTGGTAAACTGGAAA------CG-------A--------------AATCCC------C-----A-TTCTAA---AAAAA-GA--C--AACACTT-------ACCT----ACTGCTTGA-TGA--CC---CTCGT-------ATCGTCATTATGACTCTTTCTAAG-ACGAAAC-ATG-TTT-A-ACTATGCGT-AA--GCC-TG-TA--TAATG--AATCAAATTGAAATCAAAATAAA----A-TC-AT-GT-A-AC-TCTTTCAATATAAAAGTAAAA---A-------TATGTTGCAATTTTAAGCGGG-AAA-TCAATTTTAGT----A-T--AACATATGCACATAG----------------CC--CTTTTTAATA---------TAT-TATTTTGGTATG--TTT-AAT----AGA------CAC-TAT-TT--AAGCAATATG-G-GG-TC-TGT--GATTA-TAT-------------ATAGGTATGATATATTGG-AAA---------A---------G---------C----------C-AGATTTAA--t
gi|4 : aaagggagtgtttctgggggTTTT----TAAATGAATACAAAGAA---C---ATCATTATCT-ATAAATG-A-AA-TTGGAACGATCCGTTAAATTGTAAAA----A-AAACAAAAA-AAA--AAACAA---CAAC------A-AATATTTAC-----ACCGG--------A--------------G------TGTT-----G--------------AACCTA-----------------------AAATG-TA--A--ACCAC------------------CAGTTCGACTGC--AC----TTAC-------TTTGTCCTTCCGACTCT----AAG-ATGAACC-A-A-TTT-CGACAAAATGT--A--ACCATG-TA---ATCGTGGATCAAATCG----CACAAT-TATTATA-TT-AA-AT-C-ACGTGACTCA---C-TC----------A-------TGTGTTTCAATTTTAACTGGC-AAC-TGTAATTTAGT----T-CAGAACATGGGCGCATAG-----GTTAGGAAATCCC--CTTTTCAACA---------TAT-TAGTTTGGCCTG--TTTAGAT----GTA------TAT-CCT-TA--TGGCAATAAT-A-GA-TC-AGC--GATTA-TAGA-----A-A---A----GCATGATATATTGGAAAG---------A---------A---------A----------A-TGTTTTttattttaaaaatcgctatttattccctttaa
gi|10 : ttaaaggttataaatcaggaaaaatcgctgtatatgcaAAT--A-AAATCCAAAACATCTCGTA---TGTCAAAAGATT-CTGCCAAAA-AGG--GA-CA----AAAT------A-AATAT-TAA-----ATTTG--------A--------------G------TG-------GTAAACTTA------AAACTGAAATTCC-----AATTCTAT---AAATA-GA--C--AGCACTT-------ATAT----TCTGCTTGA-CAA--CC---TTTGC-------ATGATCATCC------TTTTTAAG-ATGAAAC-A-A-TTT-T-ACTACGTGT-AA--ACC-TA-TA--TAGC-------AAATTAAAATCAAAATGAA----A-TC-AT-GT-G-AC-TGATTTAACACGTCA--CAAA---A-------TATGTTGTAATTTTAAGCAAG-AAA-TGTATTTTAGT----C-T--AACCTAGGTATGTAGCCCAAGTTAGGAAA-TTC--TTTTTCAAAT---------TAT-TGTTTTGGCATG--TTTTAAT----AGA------TTT-CGT-TT--TGATAATACG-G-G------GT--AAGTA-TATATCAT-A-AGGCAATA----TAT--TATGGAAAAA---------A---------A---------A----------T-GGTTTTAGCCAATTTTAAAttgtcaattccaaaatttagagaaatcgagggtctggagtaataaaactttatttccatgcttaaaaa
gi|11 : A-----ATCGG--------C--------------A------CG-------G--------------AATCCT------A-----T-TTCTAA---AATTA-GATCA--CGCAC-G-------CA-------CTATTCAA-CGA--CC---TTCAA-------CTTATTATTCTGACCCATTTTATG-ATAAACCGA-A-TTT-C-ACAATATGT-CAGAA----A-TA--TAACG--GATCAGA------TCAAAAT-TA----AGTTGAG-GT-C-A---TAATCGATACGCAA--GAAA---A-------TATATTGTAATTTTTAGCGGATAAA---TGATTTAAT----CTT--AGTCTTGGCGT---------GTAA-------------TTTCAATA---------TCT-TATTTAGGCATAATTTTAAA-----AGATACATGTAT-CAT-CA--TGTCA--GTA-ACGA-TCAAAC--GAGTA-TATaaatcctgataaatatcctttaa
gi|14 : aaagttattttaaagttaatattgactatgaagtgttaaagtatcatttgtgactaaaatagaaattgtttaaacttcaaatcagccaatccctgacgaaaacaatattcttttagagaagtgcA--TAACG---ATCAATTTGCATTCAAAATGAA----A-TC-CC-GT-T-AC-TCTTTTAATACGTCA--CAAA---AA------TATGTCACACTTTTAAACGGG-AAA-TCTATTTTAGTTGATC-T--AACTTAGGCCCGTAGCCAAAGTTAGGAAA-TGC--CTTTTCAATA---------TTTATATTTTGACAGG--TTTAAAC----ATA------TAT--A--TT--TGGCAATACG-G-AG-TC-GGT--GAGTA-TATACCGGTATA---TATAGGCCTGTTATATTAGAAAAAATATATTTA---------A---------G----------CTAATTTTAA--AAGTCCAGAT---AA----ATTCCC--TTAAAGATACAAACTGctcagtatgatttggaa
gi|19 : AACG--AATCAAATTGAAATCAAAATAGA-------T-AC-ACGCGAT-TCATTCAGTACGTCA--CAAA---A-------TAaaaataacttttttcaattatcaaaagg
gi|17 : ttgttCG--GACCAAATTGAAATTAATATAAA----A-CC--C-TT-CTAA-TCATTTAATACATCA--TAAA---A-------ATTGTTGCACTTTTAAGTGGA-AAAATCCATTTCAGT----C-T--AACCTAGGCGCGTAGCCCAAGTTAGGAAA-TCC--CTTTTTTATA---------TAT-TATTTTGACATG--TTTAGAT----AGA------TAT-CCT-TT--AAGCAAAACC-A-GG-TC-AGT--GAGTA-TAT-------------ATAGGCATATTGTATTTGAAAA---------A---------A---------A----------T-GTTTTTAaagcctataaaatcccttttcgatgtattatttttgcatgtttaaaaagatactagtatccttttggcaatacggggtcattgagtatatatagacatgatatatagggaaaaaatgtttttagccaattttaaaagtttaaagaacctgattccatttaagagatatgtgta
gi|12 : A----A-TT-AC-GT-G-GC-TCGTATAATACGTCA--CAAA---A-------TATGTTGCAATTTTAAGCGGG-AAA-TCTATTTTAGT----C-T--AACCTAGGCATGTAACCCAAGTTAGGAAT-CCC--CTTTTCAATA---------TAG-TATTTTGAAATG--TTTAAAT----AGA------TAT-TCT-TA--CGACAACTTG-G-GAGTC-GGT--GAGTA-TGT-------------TTAGGCATGGTATATTgccaattttaattttttttaaaaat
gi|20 : gggaatatatcaggaaaaaatgctatacatatcttaaataataaggtaatttttaaaatgaataaacagcatctccttactattaataaataaaatttggtaattaaatccatcaaaacatgacaaaatcgatatccaaagtagtggtaaacttgaaacgacatttaaatactacaa-TCATTTGATACGTCA--CAAA---A-------TGTGTTGCACTTTTAAACGGG-AAA-TCTATTTTAGT----C-T--AACCTAGGCGTTTAGTCCAAGTTAGGAAA-TAT--CTTTTTAATA---------TAG-TATTTTGGCATG--ATTAAAT----ATA------TAT-CAA-TG--TGGCAGTTTA-G-GG-TC-AGA--GAGTA-TAT-------------ATAGGCATGATATATTGAAAAA---------A---------ATTTGTTTTTAGC--------C-AATTATAA--AATTTTGAA
gi|24 : TTAGCATTAATTAGGAAC-TCC--CTCTTCAATA---------TTC-TATTTTGGCATG--TTTAAAaatcctgataaattcccttta
gi|7 : gggagtatattgggaaaacacgctataaatgtctgaaaaataaaatggataaaaagcatctatgaTAGCCCAAGTAAGGAAA-CCC--CTTTTCAATA---------TAT-TATTTTGGCATG--TTTAAAT----AGA------TAT-CAT-TT--TGGCATTGTG-G-GA-TC-AGT--GAGTA-TATA-----A-A---AATAGGCTTGTCATATTGGAAAA---------A---------A---------A----------C-AGTTTTAA--AAGTTTGAATAGGAA----ATTACA--T--AAGA---AAACTGCATATTG
gi|8 : AGGAAC-TCC--CTCTTCAATA---------TTC-TATTTTGGCATG--TTTAAATTATAAGA------TAT-CCT-TT--TGGCAATACA-G-TG-CC-AGC--GAGTA-TAT-------------ATAGGCAGGACCTATTGGAAAacttactctaaaggttatgcacataaaatggtgcttgtataccgatccaatgctgtaattatttaagagttattaaattaacactcatcaaaatatggacaatagtttattacgagacacaaaaaagtatttttaatctttatatttgtctcgataaacattctgaacatagctttgcatttccagaaatatccacgcatgcacatggagggtgaaataaaaattaataacatacgcacaggcaattgtcataaacaataaatgaagaatgaacttgcaatattattttattaggtaaagattccatactgaagtcggatacccatgtcaacaactggatggaaa
gi|19 : tagcattaattAAA-TCC--CTTTTCGATG---------TAT-TATTTTTGCATG--TTTAAAA----AGATACTAGTAT-CCT-TT--TGGCAATACG-G-GG-TC-ATT--GAGTA-TAT-------------ATAGACATGATATATAGGGAAA---------A---------A---------ATGTTTTTAGCC-AATTTTAA--AAGTTTAAA---GAACCTGATTCCATTT--AAGA---GAgtttaaataatcccgataaattttgtttagagtagagaactcaacaaattttaaatggagtatatggaaattacatataaaagctgtaaatggagacttaaattcttaatctgttatgtacataaaatagtgtcaatgccttatttaacttaagagttattaaattaatactaataaaaaaatgacaacgatttatcgtgggacatgaaaaaatattgcgcaatatttacattggtctctgcaaacattccaagcataattttgtatttctgaaaatatccgtgcatccaactgccaattgaaataattatttaaaacacatgcacgggtatttttttttcacaaacaatatttttaagaatgaacatgtaatattatttattagat
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|22 ): TGGTTATATGGCAACATGAAGTCAGTGAGTACATATGATATACTCGGAGAAAAAAGATTTCGCCAATTTTGAAAAATCCTGATATACTACCTTTACAGGGAGAGTATGGAAGCTTAAAGTTGATCTGATTTTAACGAGATTGTA
Unaligned ( gi|23 ): AAAGCTGCAAATGGACACTTTCTCTATATGTTATGCACATAAAAAAGTGCTTGTATACCCATTAAATGCCAGAATTAGCCTAAGGGTTATTTAGTTAACACTTAAAAAATTAATAGTACTT
Unaligned ( gi|25 ): TAAGTCCGATATTTTTAGAATAAAATATTCATCACTGATTATCTGAATGATATCATATAAATAAAGCTA
Unaligned ( gi|26 ): CAGTCTTTTTAGGATATGTAAACTCAATACATAATTGTTTGTCGGGAAAAAAT
Unaligned ( gi|27 ): CTGCGGGTTTTTTTTAATAATGAGGGCATAAGTCGATGAAACAT
Alignments
lowQualScore : 11111 1111111111 111 11111 77777777777 1111111 111111 444444444444444 444444444444444444444444444444444 11111111111 1111 55555555555 1111 1111111 111
lowQualScore : 00000 1111111111 4 1 8888888888 2 0 3 4444 2 222 2 66666 0 11 444 5555 2 2 2 5 0 5555 1 44 66666 88888888888 3 2 66666 2 2 22 5555 444 4 77777 2 33 7 3 6 9 3 777 444 555 3 2 2 66 1 0 2 2 33 2 33 2 0 5555 444 1111111 2 2 6666 3 44 5 2 33 999999999 2 33 5555 444444 33 3 55 2 2 2 33 2 555555555555555 1 2 444 999999999999999999999999999999999 77777777777 1111 1 22222222222 2222 5555555 777
lowQualScore : ..... .......... . . .......... . . . .... . ... . ..... . .. ... .... . . . . . .... . .. ..... ........... . . ..... . . .. .... ... . ..... . .. . . . . . ... ... ... . . . .. . . . . .. . .. . . .... ... ....... . . .... . .. . . .. ......... . .. .... ...... .. . .. . . . .. . ............... . . ... ................................. ........... .... . ........... .... ....... ...
lowQualScore : 00000 9999999999 5 0 2222222222 7 3 4 9999 7 777 5 77777 3 11 777 7777 7 7 7 3 8 7777 5 33 77777 44444444444 3 7 77777 7 7 88 7777 888 5 00000 3 55 2 1 2 2 1 888 333 444 1 1 9 33 5 7 7 7 77 7 66 0 3 7777 777 3333333 9 9 5555 1 22 4 4 22 444444444 4 22 3333 444444 44 4 66 4 4 4 22 4 333333333333333 0 5 444 888888888888888888888888888888888 33333333333 4444 0 44444444444 1111 5555555 555
consensus : NNTATATCAGGAAAAAA-----CGCTATAAATGTCTTAAA-AA-----ATAAAATNATTTT-----T----AAAATGGA-TAAAAAGCATC--TCATTATCATTA-ATAAAT--A-AA-TCCGAATGGTTTGGTA---TGTCAAA----TCCACC-AAAA-CGTGA-CAA-AATCGATATT----TAAATCGGAGTGGTAA-----AC-TT-AA-----AATCCCCAT-TCTA-----AAA-ATAGA-CA-GCA----CTTAAATACTGCTTGACGAC--CNTCACATCGTCATTCGGACTCTTTCTA-AGATGAAAC-A-A-TTT-T-ACNACGTGT---AAA-CCTG-TA--TAACGGATCAAATCG-A-AATCA--AAATGAAAT-CAC-GTGACTCATTCGATAC----GTCACAA---AA-------TATGTTGCAATTTTAAGCGGG-AAA-TCTATTTTAGT----C-T--AACCTAGGCGCGTAGCCCAAGTTAGGAAAT-CC--CTTTTCAATA---------TAT-TATTTTGGCATG--TTTAAAT----AGA------T--ATCCTTT--TGGCAAT-ACGGG-GTC-AGT--GAGTAT-AT--A---------A--TAGGCATGATATA-TT---GGAAAAA---------A-------A----------CG---GTTT-----------TA-A--AANTTTGAA-----T--G--AA----ATTCC-A--T--AAGA---AAACTGCATATTG
Reference ( family-154 ) : NNTATATCAGGAAAAAA-----CGCTATAAATGTCTTAAA-AA-----ATAAAATNATTTT-----T----AAAATGGA-TAAAAAGCATC--TCATTATCATTA-ATAAAT--A-AA-TCCGAATGGTTTGGTA---TGTCAAA----TCCACC-AAAA-CGTGA-CAA-AATCGATATT----TAAATCGGAGTGGTAA-----AC-T---------AATCCCCAT-TCTA-----AAA-ATAGA-CA-GCA----CTTAAATACTGCTTGACGAC--CNTCACATCGTCATTCGGACTCTTTCTA-AGATGAAAC-A-A-TTT-T-ACNACGTGT---AAA-CCTG-TA--TAACGGATCAAATCG-A-AATCA--AAATGAAAT-CAC-GTNACTCATTTAATAC----GTCACAA---AA-------TATGTTGCAATTTTAAGCGGG-AAA-TCTATTTTAGT----C-T--AACCTAGGCGCGTAGCCCAAGTTAGGAAAT-CC--CTTTTCAATA---------TAT-TATTTTGGCATG--TTTAAAT----AGA------T--ATCNTTT--TGGCAAT-ACGGG-GTC-AGT--GAGTAT-AT--A-----A---A--TAGGCATGNTATA-TT---GGAAAAA---------A-------A----------CG---GTTT-----------TA-A--AANTTTGAA-----T--G--AA----ATTCC-A--T--AAGA---AAACTGCATATTG
gi|1 : TATGTCAGGAAAAAA-----CGCTATAAATGTCTTAAA-AA------TGAAATTATTTT-----T----AAAATAGT-TAAAT-TCATC--TCTTTATCATTA-ATAAATTAA-AG-TCCGAAAGGCTTAGCA---TGTCAAA----TCTACC-AAAAACGTGA-CAA-AATCGTTATT----TGAATCGGAGTGGGAA-----A--------------TCCCAAT-TCTA-----AAA-ATAGA-CA-GCA----CTTAAATACAGCTAGACGAT--CGTCACATCGTCATTCAGACTCTTTCTA-AGATGAAAC-A-A-TTT-TTATTTAATGT---AAA-CATG-TA--TAACGGATCAAACTG-A-AATCA--AAATGAAAT-CAC-GTGACTCATTTAATAC----GTCACAA---AA-------TATGTCGCAATTTTAAGCGAG-AAA-TCTATGTTAGT----C-T--AACCTAGGCGCGTAGCCCAAGGTAGGAAAT-CC--CTTTTCAATATAGTACATGTAT-TATTTTGGCATG--TTTAAAT----ATT------T--ATCCTTT--CAGCAAT-ATGGG---C-A-C--AAATAGAAT--A-----A---G--TAGACAT
gi|10 : aagggagAAT--A-AAATCCAAAACATCTCGTA---TGTCAAAAGATTCTGCC-AAAA-AGGGA-CAA-AATAAATATT-----AAATTTGAGTGGTAA-----AC-TTAAAACTGAAATTCCAAT-TCTA-----TAA-ATAGA-CA-GCA----CTTATATTCTGCTTGACAAC--CTTTGCATGATCATCC------TTTTTA-AGATGAAAC-A-A-TTT-T-ACTACGTGT---AAA-CCTA-TA--TAGC-----AAATTA-A-AATCA--AAATGAAAT-CAT-GTGACTGATTTAACAC----GTCACAA---AA-------TATGTTGTAATTTTAAGCAAG-AAA-TGTATTTTAGT----C-T--AACCTAGGTATGTAGCCCAAGTTAGGAAAT-TC--TTTTTCAAAT---------TAT-TGTTTTGGCATG--TTTTAAT----AGA------T--TTCGTTT--TGATAAT-ACGGG-GTA-AGT----ATAT-AT--C-----A---T--AAGGCA--ATATA-TTATGGAAAAAA---------A-------A----------TG---GTTT-----------TA-GCCAATTTTAAA-----------AA----ATCCTGA--T--AAatctttcggggggtggggtgggggggggggggaatttttatagccaaatttaatttttttaaaatcctgataaattcccttaa
gi|11 : AAAGTTATTTTAAAGTT----AATATTGACTATGAAGTGTT--AAAGTATCATTT-GTGACT--A-AAATAGAAATTGTTTAA-A---CTTCAAA----TCAGCC-AATC-CCTGA-CGA-AAACAATATTCTTTTAGA--GAAGTG-CAATCGGCAC-GG--------AATCCTATT-TCTA-----AAA-TTAGATCACGCA----C----GCACTATTCAACGAC--CTTCAACTTATTATTCTGACCCATTTTA-TGATAAACCGA-A-TTT-C-ACAATATGTCAGAAA------TA--TAACGGATCAGATCA-A-AATTA--AGTTGAGGT-CA---TAA-----TCGATAC----GCAAGAA---AA-------TATATTGTAATTTTTAGCGGATAAA---TGATTTAAT----CTT--AGTCTTGGCGTGTAA----------------------TTTCAATA---------TCT-TATTTAGGCATAATTTTAAA-----AGATACATGT--ATCATCA--TGTCAGTAAC--G-ATCAAAC--GAGTAT-AT------------C--TCAGTATGAT----TT---GGAAatatcctttaa
gi|12 : TATATCAGGAAAAAA-----TGCTATACATATCTTAAA-TA-----ATAAGGTAATTTT-----T----AAAATGAA-TAAACAGCATC--TCCTTACTATTA-ATAAAT--A-AA---------ATTTGGTA----ATTAAA----TCCATC-AAAA-CATGA-CAA-AATCGATATC----CAAA--GTAGTGGTAA-----AC-T---------------------TG-----AA------A-CG-ACA----TTTAAATACTAC
gi|12 : gggaaGT---AAA-CTTG--A---AACG----ACATTT-A-AAT-A--CTACAAAAT-TAC-GTGGCTCGTATAATAC----GTCACAA---AA-------TATGTTGCAATTTTAAGCGGG-AAA-TCTATTTTAGT----C-T--AACCTAGGCATGTAACCCAAGTTAGGAATC-CC--CTTTTCAATA---------TAG-TATTTTGAAATG--TTTAAAT----AGA------T--ATTCTTA--CGACAAC-TTGGGAGTC-GGT--GAGTAT-GT------------T--TAGGCATGGTATA-TT---aaaattacgtggctcgtataatacgtcacaaaatatgttgcaattttaagcgggaaatctattttagtctaacctaggcatgtaacccaagttaggaatccccttttcaatatagtattttgaaatgtttaaatagatattcttacgacaacttgggagtcggtgagtatgtttaggcatggtatatt
gi|13 : gggaatatatcaggaaaaaatgctatacatatcttaaataataaggtaatttttaaaatgaataaacagcatctccttactattaataaataaaatttggtaattaaatccatcaaaacatgacaaaatcgatatccaaagtagtgATCAGGAATAAAT----CTCTATAAATGTATT------------TAAAATTATTTT-----TTTTTAAAACA-A-TAGAAATCACC--TCATTATCAT-----AACT--A-AA-T----------------------AAA----TCGACC-AAAA-CGTGA-CAA-AGTCTATATT----TTGATCTGAGTGGTAA-----AC-TTAAAACAA-AATCTCCAT-TCTA-----AAA-ATAGT-CA-GCA----CTTAAATAATGATTAACGAC--CTTCAC------------ACTCTTTCTA-TGATGAAAC-ATA-TTC-T-ACACCATAT---AAA-CCAG-TA--TGATGGATC----C----AATCA--AAATGAAAT-CAA-GTGACTCATTTGACAG----GTCATAA---AACTACTTGTATGTTGCAA----------G-GAA-TCTATTT
gi|14 : taaaggttgcaaA--TAACG-ATCAATTTG-C-ATTCA--AAATGAAAT-CCC-GTTACTCTTTTAATAC----GTCACAA---AAA------TATGTCACACTTTTAAACGGG-AAA-TCTATTTTAGTTGATC-T--AACTTAGGCCCGTAGCCAAAGTTAGGAAAT-GC--CTTTTCAATA---------TTTATATTTTGACAGG--TTTAAAC----ATA------T--ATA--TT--TGGCAAT-ACGGA-GTC-GGT--GAGTAT-AT--ACCGGTATATA--TAGGCCTGTTATA-TT---AGAAAAA---------ATATATTTA----------AGCTAATTT-----------TA-A--AAGTCCAGA-----T-----AA----ATTCC-C--TTAAAGATACAAACTG
gi|15 : ATATCAGAAAAAAA-----TTATATAAATGTTTTAAA-AAGAACAACAAACTAATTAT-----T----GAAATTGA-TAAAAAGAATA--TTATTATCATTA-ATAAAG--A-AA---------ATCTG-----------AA----TTCACC-AAAA-TGTGA-CAA-AAGTGAT-TT----TAAATTGGAGTGGTAA-----AC-TTGAAACGA-AATCACCAT-TCTA-----AAA-ATAGA-CA-GCA----ATTAACAACTGTTTGATGAT--CTTCACATCGTCATTTGGACTCTTTCTA-AGATGAAAC-A-A-TTTAT-ACTACGTAT---A-----TG-TA--TTATGGATCAAATTG-A-AATCA--AAATGAAAT-CAC-Gaaaataacttttttcaattatcaaaagg
gi|16 : aagagagcGGAAAGCA-----TGCTAGAAATGTCTTAAA-AA-----ATAAAATAATCAT-----T----AAATTGGA-TAAAA-TCATC--TAATTATTATTA-ATAAATC-A-AA-TTAAAATGGCTTGGTA---TGGCAAA----TCCACC-AAAA-CGTGA-CAA-AATCAATATT----TAAGTTGAAGTGGTAA-----ACATGAAACAA--AATCCCCAT-TCTA-----AAT-ATATA-CA-GCA----CTTAACTACTGCT----GA---------AT-GTCATTCAGACTCTTTTTA-AGATGAAAT-A-GTTTT-T-AATATGTGT---AAA-CCTG-TA--T
gi|17 : tgttaaagCGGACCAAATTG-A-AATTA--ATATAAAAC-CCT-TCTAATCATTTAATAC----ATCATAA---AA-------ATTGTTGCACTTTTAAGTGGA-AAAATCCATTTCAGT----C-T--AACCTAGGCGCGTAGCCCAAGTTAGGAAAT-CC--CTTTTTTATA---------TAT-TATTTTGACATG--TTTAGAT----AGA------T--ATCCTTT--AAGCAAA-ACCAG-GTC-AGT--GAGTAT-AT------------A--TAGGCATATTGTA-TT---TGAAAAA---------A-------A----------TG---TTTT-----------TA-GCCAATTTTAA
gi|18 : TATATCAGAAAAAAAAACAACGCTATAAATGTCTTAAA-AA-----ATAAAATAATTAT-----T----AAAATGAA-TGAAAGGCATC--TCATTATCATTA-ATTAATA-A-AA-ACCGAATAGTTTATTA---TGTCAAA----TCCACA-ATAA-CGTGA-CAA-AATTGATATC----TAATTTTTAGTGGTAA-----AC-TTTAATGA--AATCCCCAT-TCTT-----AAA-ATAGA-CA-GCA----CTT-AATACTGCTTGA--------------TGCCATTCGGA--CTTTCTATATATG--GC-A-A-TTttttttttaaaaat
gi|19 : agggagTG-T---TAACGAATCAAATTG-A-AATCA--AAAT-AGATACAC-GCGATTCATTCAGTAC----GTCACAA---AA-------TA
gi|19 : tAAAT-CC--CTTTTCGATG---------TAT-TATTTTTGCATG--TTTAAAA----AGATACTAGT--ATCCTTT--TGGCAAT-ACGGG-GTC-ATT--GAGTAT-AT------------A--TAGACATGATATA-TA---GGGAAAA---------A-------ATGTTTTTAGCCA---ATTT-----------TA-A--AAGTTTAAA--------G--AACCTGATTCC-ATTT--AAGA---GAaagcctataaaatcccttttcgatgtattatttttgcatgtttaaaaagatactagtatccttttggcaatacggggtcattgagtatatatagacatgatatatagggaaaaaatgtttttagccaattttaaaagtttaaagaacctgattccatttaagagatatgtgta
gi|2 : ttgttaacgaatcaaattgaaatcaaaatagatacacgcgattcattcagtacgtcacaaaataaagcctataTATATCAAGAAAAAA-----TGCTTTAAATGTTTTAAA-GC-----ATAGCATTATTTT-----T----TAAATGGA-TAAAAAGCAAC--TCATAATCA----ATAGA------G-TCAGAATGGTTTGGTA---TATCAAA----TCCCCCCAAAA-CTTGA-CAA-AATCAATGTT----TTAATAGGAGT--TGA-----AA-TGA-------AATCCCCAC-TCTACTCTAAAA-ATAGA-CA-GCAGTATTTTAA---CTGCTTGGTAAC--CATCACATCTTCATTCAGACTCTTTCTA-AAA-AAAAA-A-A-CTG-T-AC---GTGT---AAAACCTA-CA--TGATGAAACAAATTG-A-A-TTA--AAATCAA---CAT-ATGATTCATTTGATAT----ATCGCAG---A--------TGTCTTTGAAATTTAAGCGGG-AAA-TTTGTTATAGT----C-T--AACCTTGGCGCATAGCCCAAGTTAGGAAAC-CC--CATTTCATTA---------TTT-TATCTTGGCATG--TTTAAAA----ATA------T--ATTCTTT--AGGCGAT-ATGAG-GAT-GAT--GATTAT--T--A-----T---A--TAGGCATGGTATA-TT---TGAtatgtgta
gi|20 : gaaTCATTTGATAC----GTCACAA---AA-------TGTGTTGCACTTTTAAACGGG-AAA-TCTATTTTAGT----C-T--AACCTAGGCGTTTAGTCCAAGTTAGGAAAT-AT--CTTTTTAATA---------TAG-TATTTTGGCATG--ATTAAAT----ATA------T--ATCAATG--TGGCAGT-TTAGG-GTC-AGA--GAGTAT-AT------------A--TAGGCATGATATA-TT---GAAAAAA---------A-------T----------TT---GTTTTTAGCCAATTATA-A--AATTTTGAAAATCCT--GATAA----ATTCC-ggggatgggagggggggatgtttaaagctaatttgaaaaaaaatttgaaaaatcctgatatgctccctttaa
gi|21 : TATATGAGGAAAAA------TGCTATACAAGTATTAAA-G------------TTATTTT-----T----AAAATGGA-TAAAA------------TATCATTA-ATAAAT--A-AAATCCGAATGGTTTGGTA---TGTCAAA----TACAAT-AAAA-TGTGA-CAA-AATTTATATC----TGAATTGGAGTGGTAT-----AT-T---------GAGTCCGATATTTT-----AGG-ATAAA-T---CA----ATT-AACACTGATTcttta
gi|22 : --TGGCAAC-ATGAA-GTC-AGT--GAGTAC-AT--------------------ATGATATACTC---GGAGAAA---------A-------A----------AG---ATTT-----------CGCC--AATTTTGAA-----------AA----ATCCatttaaatgctgtcatataaataaagttatttaaagaactgttgttcgg
gi|24 : tggttataTATATTGGGAAAACA-----CGCTATAAATGTCTGAAA-AA-----------------------T----AAAATGGA-TAAAAAGCATCTATGATTAGCATTA-ATTAGG--A-AC-TCCtgatatactacctttacagggagagtatggaagcttaaagttgatctgattttaacgagattgta
gi|24 : gggagAATTAGGAACT-CC--CTCTTCAATA---------TTC-TATTTTGGCATG--TTTAAActcttcaatattctattttggcatgtttaaa
gi|3 : gggagtatattgggaaaacacgctataaatgtctgaaaaataaaatggataaaaagcatctatgattagcattTATATCAGGCAAAAA-----AGCTATAAATGTCTTAAA-AA-----ATAAAATAACTTT-----T----AAAATGGA-TAAAAAGCATT--CCATTATCATTA-ATAAAT--A-AA-TCCCAATGATTTGGTA---TGTCAAA----TACACC-AAAC-CGTGA-CAC-AGTTGATATC----TAAATTGGAGCGG---------------------AATCTGCAT-TCTA-----GAA-ATAGA-AA-GCA----CTGAAATGCTGCTTGATGAA--TGTTACATCGTCGTTCGGACTCTTTCTA-CGATGAAAC-A-A-TTT-T-ACTACATGT---TAA-CCTG-TA--CAACGGATCAAACTG-A-AATCA--AAATGTAAT-TAC-ATCACTTATTCAATGC----ATCACAA---AA-------TATGTTGCAACTTTAAGCAGG-AAA-TCTATTTTAGT----C-T--AACCTAGGCGCTTAGCCCAAGTAAGGAAAC-CC--CTTTTCAATA---------TAT-TATTTTGGCATG--TTTAAAT----AGA------T--ATCATTT--TGGCATT-GTGGG-ATC-AGT--GAGTAT-ATAAA-----A---A--TAGGCTTGTCATA-TT---GGAAAAA---------A-------A----------CA---GTTT-----------TA-A--AAGTTTGAA-----TAGG--AA----ATTAC-A--T--AAGA---AAACTGCATATTG
gi|4 : atTAAATCAGGAAAAAT-----CGCTGTATATG----------------------CATTTT-----T----AAA-TGAA-TACAAAGAACA--TCATTATC--TA--TAAATG-A-AA-TTGGAACGATCCGTTAAATTGTAAAA----AAAACA-AAAA-AAAAAACAACAACAAATATT----TACACCGGAGTGTTGA-----AC----------------------CTA-----AAATGTAAA-C---CA----C-------CAGTTCGACTGC--ACTTACTTTGTCCTTCCGACTCT----A-AGATGAACC-A-A-TTT-CGACAAAATGT---AAC-CATG-TAA-TCGTGGATCAAATCGCACAATTATTATATTAAAT-CAC-GTGACTCACTC--------------------A-------TGTGTTTCAATTTTAACTGGC-AAC-TGTAATTTAGT----T-CAGAACATGGGCGCATAG-----GTTAGGAAATCCC--CTTTTCAACA---------TAT-TAGTTTGGCCTG--TTTAGAT----GTA------T--ATCCTTA--TGGCAAT-AATAG-ATC-AGC--GATTAT-AG--A-----A-------AAGCATGATATA-TT---GGAAAGA---------A-------A----------AT---GTTT-----------T
gi|5 : ttaaaggttaTATATCAGGAAAAAT-----CGTTATTACTGTTTTTAA-AA-----A---AAT-----------T----AAACTTGA-AACAAAGCAAT--TCATTATCATTA-ATAATT--AGAA-TTTGAATGGTTTGGTT---TATCAAA----TCCACC-AAAA-CTTAA-GAATAAACAACATT----TTTATCGAGGTGGTGA-----AC-TTT-------AATCAA-AT-TCTA-----AAA-ATAGA-TA-GCA----TTGAAATACTGCTTGACGAC--CCTCAAATCTTTATCCGGACATTTTTTG-AGATGAAAC-ATA-TTA-A-ACAATATGT---AAA-CAAG-TATTTAA--GATCGAATCG-A-GGCCA--AAATG------------ACTCATCTGTTAC----GTCCCGA---AA-------CACGTTGCAAATTTAAGTCGG-AA---CAATTTTAGT----C-T--AATTCAGACGCGCAGGCCTAGTTAG---AT-CTAACTTTTCAATG---------TAT-T-TTTT-ACATG--TTTAAGT----AGA------T--GTTTTTTA-TAGCAAT-ACGGG-GTC-AGTAAGAATAT-AT--A-----C---ATGTAGGCCTGGTATA-TT---AGAGCAA---------A-------G----------TG---ATttgtcaattccaaaatttagagaaatcgagggtctggagtaataaaactttatttccatgcttaaaaa
gi|6 : caaaggtcgTCTGGGGGAAA-----TGCTTTATCTGTCTCAAATAA-----ATAAAATTATTTT----------AAAATGGA-TATA--GCATC--TCATTATCAT-------A---A-AA-TTCACTTGGTTTGGTA---TGTCAAA----TCAACC-AAAA-CCTGG-CAA-TTTCGATATT-----AAATTGGACTGGTAA-----AC-TGGAAACGA-AATCCCCAT-TCTA-----AAA-AAAGA-CA-ACA----CTTACCTACTGCTTGATGAC--CCTCGTATCGTCATTATGACTCTTTCTA-AGACGAAAC-ATG-TTT-A-ACTATGCGT---AAG-CCTG-TA--TAATGAATCAAATTG-A-AATCA--AAATAAAAT-CAT-GTAACTCTTTCAATATAAAAGT-A-AA---AA-------TATGTTGCAATTTTAAGCGGG-AAA-TCAATTTTAGT----A-T--AACATATGCACATAG----------------CC--CTTTTTAATA---------TAT-TATTTTGGTATG--TTT-AAT----AGA------C--ACTATTT--AAGCAAT-ATGGG-GTC-TGT--GATTAT-AT------------A--TAGGTATGATATA-TT---GGAAAAGCCAGATTT-A-------A----------TT---ATTT-----------TA-A--AAATgtattcaatatacttcctttaataaataattaaatat
gi|7 : aaagggagtgttTAGCCCAAGTAAGGAAAC-CC--CTTTTCAATA---------TAT-TATTTTGGCATG--TTTAAAT----AGA------T--ATCATTT--TGGCATT-GTGGG-ATC-AGT--GAGTAT-ATAAA-----A---A--TAGGCTTGTCATA-TT---GGAAAAA---------A-------A----------CA---GTTT-----------TA-A--AAGTTTGAA-----TAGG--AA----ATTAC-A--T--AAGA---AAACTGCATATTGcgctatttattccctttaa
gi|8 : AATTAGGAACT-CC--CTCTTCAATA---------TTC-TATTTTGGCATG--TTTAAATTATAAGA------T--ATCCTTT--TGGCAAT-ACAGT-GCC-AGC--GAGTAT-AT------------A--TAGGCAGGACCTA-TT---GGAAAacttactctaaaggttatgcacataaaatggtgcttgtataccgatccaatgctgtaattatttaagagttattaaattaacactcatcaaaatatggacaatagtttattacgagacacaaaaaagtatttttaatctttatatttgtctcgataaacattctgaacatagctttgcatttccagaaatatccacgcatgcacatggagggtgaaataaaaattaataacatacgcacaggcaattgtcataaacaataaatgaagaatgaacttgcaatattattttattaggtaaagattccatactgaagtcggatacccatgtcaacaactggatggaaa
gi|9 : tagcattTATGTCTGGGAAAAA-----TGCTATAAATGTCTAAAA-AA-----ATAAAATGA---------------------A-TACAAAGAA----TCATTATTGTTAGATACAA--A-AG-TT----TGTTTT-------TTTCAAA----TCCATC-AAAT-CATGA-CAA-AAACATTATT----T-------AGTGGTAA-----AA-TTAAAATGA-AACCCCCAT-TTTG-----AAA-TAAGA-CC-GCG----CGTA---ACTGTTTGA-GATGATTTCACCTGTTCATTATCACTTTTTCTA-AGATAAAACAA-A-TTC-T-GCAATATGT---AAA-ATTACTA--AGACTGATCATATCA-A-AATTA--AAATGAAAT--ACTGTGATTTATTTGATGC----ATTACAGTCTTA-------TATCTTTCAATTTTAAGCAGG-AAA-TTTATTTTAGT----C-T--GA-----GTGAGTAGGCCAAG-TA---------------CCGGTA---------TAT-TATTTT-GTATG--TTTAAAT----AGA------TAGATATATTAATGGCAAT-ACGGG-ATG-AGT--GAGTAT-A------------------------ATATA-TT---GGAAAAACTTGTTTTTG-------C----------CA---GTTT-----------TA-A--ATTTTTGAA-----gtttaaataatcccgataaattttgtttagagtagagaactcaacaaattttaaatggagtatatggaaattacatataaaagctgtaaatggagacttaaattcttaatctgttatgtacataaaatagtgtcaatgccttatttaacttaagagttattaaattaatactaataaaaaaatgacaacgatttatcgtgggacatgaaaaaatattgcgcaatatttacattggtctctgcaaacattccaagcataattttgtatttctgaaaatatccgtgcatccaactgccaattgaaataattatttaaaacacatgcacgggtatttttttttcacaaacaatatttttaagaatgaacatgtaatattatttattagat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): AAAGCTGCAAATGGACACTTTCTCTATATGTTATGCACATAAAAAAGTGCTTGTATACCCATTAAATGCCAGAATTAGCCTAAGGGTTATTTAGTTAACACTTAAAAAATTAATAGTACTT
Unaligned ( gi|25 ): TAAGTCCGATATTTTTAGAATAAAATATTCATCACTGATTATCTGAATGATATCATATAAATAAAGCTA
Unaligned ( gi|26 ): CAGTCTTTTTAGGATATGTAAACTCAATACATAATTGTTTGTCGGGAAAAAAT
Unaligned ( gi|27 ): CTGCGGGTTTTTTTTAATAATGAGGGCATAAGTCGATGAAACAT
Alignments
lowQualScore : 11111 1111111111 111 11111 1111111111111 222222222222 1111111 111111 4444444444444 444444444444444444444444444444444 11111111111 1111 55555555555 1111 1111111 111
lowQualScore : 00000 1111111111 4 1 8888888888 2 0 3 4444 2 222 2 66666 0 11 444 5555 2 2 2 5 0 5555 1 44 33 0 9999999999999 555555555555 77777 3 3 6666 0 77 4 77777 2 33 7 3 6 9 3 777 444 555 3 2 2 66 1 0 2 2 33 1 2 33 22 5555 444 1111111 2 2 6666 3 44 5 2 33 999999999 2 33 5555 444444 33 4 55 2 2 2 33 1111111111111 2 2 444 999999999999999999999999999999999 77777777777 1111 1 22222222222 2222 5555555 777
lowQualScore : ..... .......... . . .......... . . . .... . ... . ..... . .. ... .... . . . . . .... . .. .. . ............. ............ ..... . . .... . .. . ..... . .. . . . . . ... ... ... . . . .. . . . . .. . . .. .. .... ... ....... . . .... . .. . . .. ......... . .. .... ...... .. . .. . . . .. ............. . . ... ................................. ........... .... . ........... .... ....... ...
lowQualScore : 00000 9999999999 5 0 2222222222 7 3 4 9999 7 777 5 77777 3 11 777 7777 7 7 7 3 8 7777 5 33 77 8 9999999999999 999999999999 11111 1 1 5555 4 55 5 00000 3 55 2 1 2 2 1 888 333 444 1 1 9 33 5 7 7 7 77 5 7 66 55 7777 777 3333333 9 9 5555 1 22 4 4 22 444444444 4 22 3333 444444 44 5 66 4 4 4 22 0000000000000 4 4 444 888888888888888888888888888888888 33333333333 4444 0 44444444444 1111 5555555 555
consensus : NNTATATCAGGAAAAAA-----CGCTATAAATGTCTTAAA-AA-----ATAAAATNATTTT-----T----AAAATGGA-TAAAAAGCATC--TCATTATCATTA-ATAAAT--A-AA-TCCGAATGGTTTGGTA---TGTCAAA----TCCACC-AAAA-CGTGA-CAA-AATCGATATT----TAAATCGGAGTG--GTAAACT-----T-----GAAA------T-----CCCCATTCTA-----AAAATAGA-CA-GCA----CTTAAATACTGCTTGACGAC--CNTCACATCGTCATTCGGACTCTTTCTA-AGATGAAAC-A-A-TTT-T-ACNACGTGT---AAA-CCTG-TA--TAACGGATCAAATCG-A-AATCA--AAATGAAAT-CAC-GTGACTCATTCGATAC----GTCACAA---AA-------TATGTTGCAATTTTAAGCGGG-AAA-TCTATTTTAGT----C-T--AACCTAGGCGCGTAGCCCAAGTTAGGAAAT-CC--CTTTTCAATA---------TAT-TATTTTGGCATG--TTTAAAT----AGA------T--ATCCTTT--TGGCAAT-ACGGG-GTC-AGT--GAGTATAT---A---------AT-AGGCATGATATA-TT---GGAAAAA---------A-------A----------CG---GTTT-----------TA-A--AANTTTGAA-----T--G--AA----ATTCC-A--T--AAGA---AAACTGCATATTG
Reference ( family-154 ) : NNTATATCAGGAAAAAA-----CGCTATAAATGTCTTAAA-AA-----ATAAAATNATTTT-----T----AAAATGGA-TAAAAAGCATC--TCATTATCATTA-ATAAAT--A-AA-TCCGAATGGTTTGGTA---TGTCAAA----TCCACC-AAAA-CGTGA-CAA-AATCGATATT----TAAATCGGAGTG--GTAAACT-----T-----AAAA------T-----CCCCATTCTA-----AAAATAGA-CA-GCA----CTTAAATACTGCTTGACGAC--CNTCACATCGTCATTCGGACTCTTTCTA-AGATGAAAC-A-A-TTT-T-ACNACGTGT---AAA-CCTG-TA--TAACGGATCAAATCG-A-AATCA--AAATGAAAT-CAC-GTGACTCATTCGATAC----GTCACAA---AA-------TATGTTGCAATTTTAAGCGGG-AAA-TCTATTTTAGT----C-T--AACCTAGGCGCGTAGCCCAAGTTAGGAAAT-CC--CTTTTCAATA---------TAT-TATTTTGGCATG--TTTAAAT----AGA------T--ATCCTTT--TGGCAAT-ACGGG-GTC-AGT--GAGTATAT---A---------AT-AGGCATGATATA-TT---GGAAAAA---------A-------A----------CG---GTTT-----------TA-A--AANTTTGAA-----T--G--AA----ATTCC-A--T--AAGA---AAACTGCATATTG
gi|1 : TATGTCAGGAAAAAA-----CGCTATAAATGTCTTAAA-AA------TGAAATTATTTT-----T----AAAATAGT-TAAAT-TCATC--TCTTTATCATTA-ATAAATTAA-AG-TCCGAAAGGCTTAGCA---TGTCAAA----TCTACC-AAAAACGTGA-CAA-AATCGTTATT----TGAATCGGAGTG--G-----------------GAAA------T-----CCCAATTCTA-----AAAATAGA-CA-GCA----CTTAAATACAGCTAGACGAT--CGTCACATCGTCATTCAGACTCTTTCTA-AGATGAAAC-A-A-TTT-TTATTTAATGT---AAA-CATG-TA--TAACGGATCAAACTG-A-AATCA--AAATGAAAT-CAC-GTGACTCATTTAATAC----GTCACAA---AA-------TATGTCGCAATTTTAAGCGAG-AAA-TCTATGTTAGT----C-T--AACCTAGGCGCGTAGCCCAAGGTAGGAAAT-CC--CTTTTCAATATAGTACATGTAT-TATTTTGGCATG--TTTAAAT----ATT------T--ATCCTTT--CAGCAAT-ATGGG-CAC-AA-------ATAG---A---------AT-AAGTA-GACATA-T
gi|10 : aagggagAAT--A-AAATCCAAAACATCTCGTA---TGTCAAAAGATTCTGCC-AAAA-AGGGA-CAA-AATAAATATT-----AAATTTGAGTG--GTAAACT-----T-----AAAACTGAAAT-----TCCAATTCTA-----TAAATAGA-CA-GCA----CTTATATTCTGCTTGACAAC--CTTTGCATGATCATCC------TTTTTA-AGATGAAAC-A-A-TTT-T-ACTACGTGT---AAA-CCTA-TA--TAGC-----AAATTA-A-AATCA--AAATGAAAT-CAT-GTGACTGATTTAACAC----GTCACAA---AA-------TATGTTGTAATTTTAAGCAAG-AAA-TGTATTTTAGT----C-T--AACCTAGGTATGTAGCCCAAGTTAGGAAAT-TC--TTTTTCAAAT---------TAT-TGTTTTGGCATG--TTTTAAT----AGA------T--TTCGTTT--TGATAAT-ACGGG-GTA-AGT----ATATAT---C---------ATAAGGCA--ATATA-TTATGGAAAAAA---------A-------A----------TG---GTTT-----------TA-GCCAATTTTAAA-----------AA----ATCCTGA--T--AActttcggggggtggggtgggggggggggggaatttttatagccaaatttaatttttttaaaatcctgataaattcccttaa
gi|11 : AAAGTTATTTTAAAGTT----AATATTGACTATGAAGTGTT--AAAGTATCATTT-GTGACT--A-AAATAGAAATTGTTTAA-A---CTTCAAA----TCAGCC-AATC-CCTGA-CGA-AAACAATATTCTTTTAGA--GAAGTGCAATCGGCA-----C-----GGAA------T-----CCTATTTCTA-----AAATTAGATCACGCA----C----GCACTATTCAACGAC--CTTCAACTTATTATTCTGACCCATTTTA-TGATAAACCGA-A-TTT-C-ACAATATGTCAGAAA------TA--TAACGGATCAGATCA-A-AATTA--AGTTGAGGT-CA---TAA-----TCGATAC----GCAAGAA---AA-------TATATTGTAATTTTTAGCGGATAAA---TGATTTAAT----CTT--AGTCTTGGCGTGTAA----------------------TTTCAATA---------TCT-TATTTAGGCATAATTTTAAA-----AGATACATGT--ATCATCA--TGTCAGTAAC--G-ATCAAAC--GAGTATAT-------------CT-CAGTATGAT----TT---GGAAatatcctttaa
gi|12 : TATATCAGGAAAAAA-----TGCTATACATATCTTAAA-TA-----ATAAGGTAATTTT-----T----AAAATGAA-TAAACAGCATC--TCCTTACTATTA-ATAAAT--A-AA---------ATTTGGTA----ATTAAA----TCCATC-AAAA-CATGA-CAA-AATCGATATC----CAAA--GTAGTG--GTAAACT-----T-----GAAA------------CGACATT-TA-----AA
gi|12 : gggaaGT---AAA-CTTG--A---AACG----ACATTT-A-AAT-A--CTACAAAAT-TAC-GTGGCTCGTATAATAC----GTCACAA---AA-------TATGTTGCAATTTTAAGCGGG-AAA-TCTATTTTAGT----C-T--AACCTAGGCATGTAACCCAAGTTAGGAATC-CC--CTTTTCAATA---------TAG-TATTTTGAAATG--TTTAAAT----AGA------T--ATTCTTA--CGACAAC-TTGGGAGTC-GGT--GAGTATGT-------------TT-AGGCATGGTATA-TT---tactacaaaattacgtggctcgtataatacgtcacaaaatatgttgcaattttaagcgggaaatctattttagtctaacctaggcatgtaacccaagttaggaatccccttttcaatatagtattttgaaatgtttaaatagatattcttacgacaacttgggagtcggtgagtatgtttaggcatggtatatt
gi|13 : gggaatatatcaggaaaaaatgctatacatatcttaaataataaggtaatttttaaaatgaataaacagcatctccttactattaataaataaaatttggtaattaaatccatcaaaacatgacaaaatcgatatccaaagtagtgATCAGGAATAAAT----CTCTATAAATGTATT------------TAAAATTATTTT-----TTTTTAAAACA-A-TAGAAATCACC--TCATTATCAT-----AACT--A-AA-T----------------------AAA----TCGACC-AAAA-CGTGA-CAA-AGTCTATATT----TTGATCTGAGTG--GTAAACT-----T-----AAAACAAAA-T-----CTCCATTCTA-----AAAATAGT-CA-GCA----CTTAAATAATGATTAACGAC--CTTCAC------------ACTCTTTCTA-TGATGAAAC-ATA-TTC-T-ACACCATAT---AAA-CCAG-TA--TGATGGATC----C----AATCA--AAATGAAAT-CAA-GTGACTCATTTGACAG----GTCATAA---AACTACTTGTATGTTGCAA----------G-GAA-TCTATTT
gi|14 : taaaggttgcaaA--TAACG-ATCAATTTG-C-ATTCA--AAATGAAAT-CCC-GTTACTCTTTTAATAC----GTCACAA---AAA------TATGTCACACTTTTAAACGGG-AAA-TCTATTTTAGTTGATC-T--AACTTAGGCCCGTAGCCAAAGTTAGGAAAT-GC--CTTTTCAATA---------TTTATATTTTGACAGG--TTTAAAC----ATA------T--ATA--TT--TGGCAAT-ACGGA-GTC-GGT--GAGTATAT---ACCGGTATATAT-AGGCCTGTTATA-TT---AGAAAAA---------ATATATTTA----------AGCTAATTT-----------TA-A--AAGTCCAGA-----T-----AA----ATTCC-C--TTAAAGATACAAACTG
gi|15 : ATATCAGAAAAAAA-----TTATATAAATGTTTTAAA-AAGAACAACAAACTAATTAT-----T----GAAATTGA-TAAAAAGAATA--TTATTATCATTA-ATAAAG--A-AA---------ATCTG-----------AA----TTCACC-AAAA-TGTGA-CAA-AAGTGAT-TT----TAAATTGGAGTG--GTAAACT-----T-----GAAACGAAA-T-----CACCATTCTA-----AAAATAGA-CA-GCA----ATTAACAACTGTTTGATGAT--CTTCACATCGTCATTTGGACTCTTTCTA-AGATGAAAC-A-A-TTTAT-ACTACGTAT---A-----TG-TA--TTATGGATCAAATTG-A-AATCA--AAATGAAAT-CAC-Gaaaataacttttttcaattatcaaaagg
gi|16 : aagagagcGGAAAGCA-----TGCTAGAAATGTCTTAAA-AA-----ATAAAATAATCAT-----T----AAATTGGA-TAAAA-TCATC--TAATTATTATTA-ATAAATC-A-AA-TTAAAATGGCTTGGTA---TGGCAAA----TCCACC-AAAA-CGTGA-CAA-AATCAATATT----TAAGTTGAAGTG--GTAAACA-----TGAAACAAAA------T-----CCCCATTCTA-----AATATATA-CA-GCA----CTTAACTACTGCT----GA---------AT-GTCATTCAGACTCTTTTTA-AGATGAAAT-A-GTTTT-T-AATATGTGT---AAA-CCTG-TA--T
gi|17 : tgttaaagCGGACCAAATTG-A-AATTA--ATATAAAAC-CCT-TCTAATCATTTAATAC----ATCATAA---AA-------ATTGTTGCACTTTTAAGTGGA-AAAATCCATTTCAGT----C-T--AACCTAGGCGCGTAGCCCAAGTTAGGAAAT-CC--CTTTTTTATA---------TAT-TATTTTGACATG--TTTAGAT----AGA------T--ATCCTTT--AAGCAAA-ACCAG-GTC-AGT--GAGTATAT-------------AT-AGGCATATTGTA-TT---TGAAAAA---------A-------A----------TG---TTTT-----------TA-GCCAATTTTAA
gi|18 : TATATCAGAAAAAAAAACAACGCTATAAATGTCTTAAA-AA-----ATAAAATAATTAT-----T----AAAATGAA-TGAAAGGCATC--TCATTATCATTA-ATTAATA-A-AA-ACCGAATAGTTTATTA---TGTCAAA----TCCACA-ATAA-CGTGA-CAA-AATTGATATC----TAATTTTTAGTG--GTAAACTTTAA-T-----GAAA------T-----CCCCATTCTT-----AAAATAGA-CA-GCA----CTT-AATACTGCTTGA--------------TGCCATTCGGA--CTTTCTATATATG--GC-A-A-TTttttttttaaaaat
gi|19 : agggagTG-T---TAACGAATCAAATTG-A-AATCA--AAAT-AGATACAC-GCGATTCATTCAGTAC----GTCACAA---AA-------TA
gi|19 : tAAAT-CC--CTTTTCGATG---------TAT-TATTTTTGCATG--TTTAAAA----AGATACTAGT--ATCCTTT--TGGCAAT-ACGGG-GTC-ATT--GAGTATAT-------------AT-AGACATGATATA-TA---GGGAAAA---------A-------ATGTTTTTAGCCA---ATTT-----------TA-A--AAGTTTAAA--------G--AACCTGATTCC-ATTT--AAGA---GAaagcctataaaatcccttttcgatgtattatttttgcatgtttaaaaagatactagtatccttttggcaatacggggtcattgagtatatatagacatgatatatagggaaaaaatgtttttagccaattttaaaagtttaaagaacctgattccatttaagagatatgtgta
gi|2 : ttgttaacgaatcaaattgaaatcaaaatagatacacgcgattcattcagtacgtcacaaaataaagcctataTATATCAAGAAAAAA-----TGCTTTAAATGTTTTAAA-GC-----ATAGCATTATTTT-----T----TAAATGGA-TAAAAAGCAAC--TCATAATCA----ATAGA------G-TCAGAATGGTTTGGTA---TATCAAA----TCCCCCCAAAA-CTTGA-CAA-AATCAATGTT----TTAATAGGAGTT--G-AAA-------T-----GAAA------T-----CCCCACTCTACTCTAAAAATAGA-CA-GCAGTATTTTAA---CTGCTTGGTAAC--CATCACATCTTCATTCAGACTCTTTCTA-AAA-AAAAA-A-A-CTG-T-AC---GTGT---AAAACCTA-CA--TGATGAAACAAATTG-A-A-TTA--AAATCAA---CAT-ATGATTCATTTGATAT----ATCGCAG---A--------TGTCTTTGAAATTTAAGCGGG-AAA-TTTGTTATAGT----C-T--AACCTTGGCGCATAGCCCAAGTTAGGAAAC-CC--CATTTCATTA---------TTT-TATCTTGGCATG--TTTAAAA----ATA------T--ATTCTTT--AGGCGAT-ATGAG-GAT-GAT--GATTAT-T---AT--------AT-AGGCATGGTATA-TT---TGAtatgtgta
gi|20 : gaaTCATTTGATAC----GTCACAA---AA-------TGTGTTGCACTTTTAAACGGG-AAA-TCTATTTTAGT----C-T--AACCTAGGCGTTTAGTCCAAGTTAGGAAAT-AT--CTTTTTAATA---------TAG-TATTTTGGCATG--ATTAAAT----ATA------T--ATCAATG--TGGCAGT-TTAGG-GTC-AGA--GAGTATAT-------------AT-AGGCATGATATA-TT---GAAAAAA---------A-------T----------TT---GTTTTTAGCCAATTATA-A--AATTTTGAAAATCCT--GATAA----ATTCC-ggggatgggagggggggatgtttaaagctaatttgaaaaaaaatttgaaaaatcctgatatgctccctttaa
gi|21 : TATATGAGGAAAAA------TGCTATACAAGTATTAAA-G------------TTATTTT-----T----AAAATGGA-TAAAA------------TATCATTA-ATAAAT--A-AAATCCGAATGGTTTGGTA---TGTCAAA----TACAAT-AAAA-TGTGA-CAA-AATTTATATC----TGAATTGGAGTG--GTActtta
gi|22 : --TGGCAAC-ATGAA-GTC-AGT--GAGTACAT--------------------ATGATATACTC---GGAGAAA---------A-------A----------AG---ATTT-----------CGCC--AATTTTGAA-----------AA----ATCCtattgagtccgatattttaggataaatcaattaacactgattatttaaatgctgtcatataaataaagttatttaaagaactgttgttcgg
gi|24 : tggttataTATATTGGGAAAACA-----CGCTATAAATGTCTGAAA-AA-----------------------T----AAAATGGA-TAAAAAGCATCTATGATTAGCATTA-ATTAGG--A-AC-TCCtgatatactacctttacagggagagtatggaagcttaaagttgatctgattttaacgagattgta
gi|24 : gggagAATTAGGAACT-CC--CTCTTCAATA---------TTC-TATTTTGGCATG--TTTAAActcttcaatattctattttggcatgtttaaa
gi|3 : gggagtatattgggaaaacacgctataaatgtctgaaaaataaaatggataaaaagcatctatgattagcattTATATCAGGCAAAAA-----AGCTATAAATGTCTTAAA-AA-----ATAAAATAACTTT-----T----AAAATGGA-TAAAAAGCATT--CCATTATCATTA-ATAAAT--A-AA-TCCCAATGATTTGGTA---TGTCAAA----TACACC-AAAC-CGTGA-CAC-AGTTGATATC----TAAATTGGAGCG--G-------------------AA------T-----CTGCATTCTA-----GAAATAGA-AA-GCA----CTGAAATGCTGCTTGATGAA--TGTTACATCGTCGTTCGGACTCTTTCTA-CGATGAAAC-A-A-TTT-T-ACTACATGT---TAA-CCTG-TA--CAACGGATCAAACTG-A-AATCA--AAATGTAAT-TAC-ATCACTTATTCAATGC----ATCACAA---AA-------TATGTTGCAACTTTAAGCAGG-AAA-TCTATTTTAGT----C-T--AACCTAGGCGCTTAGCCCAAGTAAGGAAAC-CC--CTTTTCAATA---------TAT-TATTTTGGCATG--TTTAAAT----AGA------T--ATCATTT--TGGCATT-GTGGG-ATC-AGT--GAGTATATAAAA---------AT-AGGCTTGTCATA-TT---GGAAAAA---------A-------A----------CA---GTTT-----------TA-A--AAGTTTGAA-----TAGG--AA----ATTAC-A--T--AAGA---AAACTGCATATTG
gi|4 : atTAAATCAGGAAAAAT-----CGCTGTATATG----------------------CATTTT-----T----AAA-TGAA-TACAAAGAACA--TCATTATC--TA--TAAATG-A-AA-TTGGAACGATCCGTTAAATTGTAAAA----AAAACA-AAAA-AAAAAACAACAACAAATATT----TACACCGGAGTG--TTGAACC-----T-----AAAA------T-----------------------GTAAA-C---CA----C-------CAGTTCGACTGC--ACTTACTTTGTCCTTCCGACTCT----A-AGATGAACC-A-A-TTT-CGACAAAATGT---AAC-CATG-TAA-TCGTGGATCAAATCGCACAATTATTATATTAAAT-CAC-GTGACTCACTC--------------------A-------TGTGTTTCAATTTTAACTGGC-AAC-TGTAATTTAGT----T-CAGAACATGGGCGCATAG-----GTTAGGAAATCCC--CTTTTCAACA---------TAT-TAGTTTGGCCTG--TTTAGAT----GTA------T--ATCCTTA--TGGCAAT-AATAG-ATC-AGC--GATTATAG---A---------A--AAGCATGATATA-TT---GGAAAGA---------A-------A----------AT---GTTT-----------T
gi|5 : ttaaaggttaTATATCAGGAAAAAT-----CGTTATTACTGTTTTTAA-AA-----A---AAT-----------T----AAACTTGA-AACAAAGCAAT--TCATTATCATTA-ATAATT--AGAA-TTTGAATGGTTTGGTT---TATCAAA----TCCACC-AAAA-CTTAA-GAATAAACAACATT----TTTATCGAGGTG--GTGAACT-----T-----TAA-------------TCAAATTCTA-----AAAATAGA-TA-GCA----TTGAAATACTGCTTGACGAC--CCTCAAATCTTTATCCGGACATTTTTTG-AGATGAAAC-ATA-TTA-A-ACAATATGT---AAA-CAAG-TATTTAA--GATCGAATCG-A-GGCCA--AAA------------TGACTCATCTGTTAC----GTCCCGA---AA-------CACGTTGCAAATTTAAGTCGG-AA---CAATTTTAGT----C-T--AATTCAGACGCGCAGGCCTAGTTAG---AT-CTAACTTTTCAATG---------TAT-T-TTTT-ACATG--TTTAAGT----AGA------T--GTTTTTTA-TAGCAAT-ACGGG-GTC-AGTAAGAATATAT---ACAT------GT-AGGCCTGGTATA-TT---AGAGCAA---------A-------G----------TG---ATttgtcaattccaaaatttagagaaatcgagggtctggagtaataaaactttatttccatgcttaaaaa
gi|6 : caaaggtcgTCTGGGGGAAA-----TGCTTTATCTGTCTCAAATAA-----ATAAAATTATTTT----------AAAATGGA-TATA--GCATC--TCATTATCAT-------A---A-AA-TTCACTTGGTTTGGTA---TGTCAAA----TCAACC-AAAA-CCTGG-CAA-TTTCGATATT-----AAATTGGACTG--GTAAACTGGAAAC-----GAAA------T-----CCCCATTCTA-----AAAAAAGA-CA-ACA----CTTACCTACTGCTTGATGAC--CCTCGTATCGTCATTATGACTCTTTCTA-AGACGAAAC-ATG-TTT-A-ACTATGCGT---AAG-CCTG-TA--TAATGAATCAAATTG-A-AATCA--AAATAAAAT-CAT-GTAACTCTTTCAATATAAAAGT-A-AA---AA-------TATGTTGCAATTTTAAGCGGG-AAA-TCAATTTTAGT----A-T--AACATATGCACATAG----------------CC--CTTTTTAATA---------TAT-TATTTTGGTATG--TTT-AAT----AGA------C--ACTATTT--AAGCAAT-ATGGG-GTC-TGT--GATTATAT-------------AT-AGGTATGATATA-TT---GGAAAAGCCAGATTT-A-------A----------TT---ATTT-----------TA-A--AAATgtattcaatatacttcctttaataaataattaaatat
gi|7 : aaagggagtgttTAGCCCAAGTAAGGAAAC-CC--CTTTTCAATA---------TAT-TATTTTGGCATG--TTTAAAT----AGA------T--ATCATTT--TGGCATT-GTGGG-ATC-AGT--GAGTATATAAAA---------AT-AGGCTTGTCATA-TT---GGAAAAA---------A-------A----------CA---GTTT-----------TA-A--AAGTTTGAA-----TAGG--AA----ATTAC-A--T--AAGA---AAACTGCATATTGcgctatttattccctttaa
gi|8 : AATTAGGAACT-CC--CTCTTCAATA---------TTC-TATTTTGGCATG--TTTAAATTATAAGA------T--ATCCTTT--TGGCAAT-ACAGT-GCC-AGC--GAGTATAT-------------AT-AGGCAGGACCTA-TT---GGAAAacttactctaaaggttatgcacataaaatggtgcttgtataccgatccaatgctgtaattatttaagagttattaaattaacactcatcaaaatatggacaatagtttattacgagacacaaaaaagtatttttaatctttatatttgtctcgataaacattctgaacatagctttgcatttccagaaatatccacgcatgcacatggagggtgaaataaaaattaataacatacgcacaggcaattgtcataaacaataaatgaagaatgaacttgcaatattattttattaggtaaagattccatactgaagtcggatacccatgtcaacaactggatggaaa
gi|9 : tagcattTATGTCTGGGAAAAA-----TGCTATAAATGTCTAAAA-AA-----ATAAAATGA---------------------A-TACAAAGAA----TCATTATTGTTAGATACAA--A-AG-TT----TGTTTT-------TTTCAAA----TCCATC-AAAT-CATGA-CAA-AAACATTATT----T-------AGTG--GTAAAAT-----T-----AAAA------TGAAACCCCCATTTTG-----AAATAAGA-CC-GCG----CGTA---ACTGTTTGA-GATGATTTCACCTGTTCATTATCACTTTTTCTA-AGATAAAACAA-A-TTC-T-GCAATATGT---AAA-ATTACTA--AGACTGATCATATCA-A-AATTA--AAATGAAAT--ACTGTGATTTATTTGATGC----ATTACAGTCTTA-------TATCTTTCAATTTTAAGCAGG-AAA-TTTATTTTAGT----C-T--GA-----GTGAGTAGGCCAAG-TA---------------CCGGTA---------TAT-TATTTT-GTATG--TTTAAAT----AGA------TAGATATATTAATGGCAAT-ACGGG-ATG-AGT--GAGTATA------------------------ATATA-TT---GGAAAAACTTGTTTTTG-------C----------CA---GTTT-----------TA-A--ATTTTTGAA-----gtttaaataatcccgataaattttgtttagagtagagaactcaacaaattttaaatggagtatatggaaattacatataaaagctgtaaatggagacttaaattcttaatctgttatgtacataaaatagtgtcaatgccttatttaacttaagagttattaaattaatactaataaaaaaatgacaacgatttatcgtgggacatgaaaaaatattgcgcaatatttacattggtctctgcaaacattccaagcataattttgtatttctgaaaatatccgtgcatccaactgccaattgaaataattatttaaaacacatgcacgggtatttttttttcacaaacaatatttttaagaatgaacatgtaatattatttattagat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): AAAGCTGCAAATGGACACTTTCTCTATATGTTATGCACATAAAAAAGTGCTTGTATACCCATTAAATGCCAGAATTAGCCTAAGGGTTATTTAGTTAACACTTAAAAAATTAATAGTACTT
Unaligned ( gi|25 ): TAAGTCCGATATTTTTAGAATAAAATATTCATCACTGATTATCTGAATGATATCATATAAATAAAGCTA
Unaligned ( gi|26 ): CAGTCTTTTTAGGATATGTAAACTCAATACATAATTGTTTGTCGGGAAAAAAT
Unaligned ( gi|27 ): CTGCGGGTTTTTTTTAATAATGAGGGCATAAGTCGATGAAACAT
Alignments
lowQualScore : 11111 1111111111 111 11111 22222222222222 22222 1111111 111111 4444444444444 444444444444444444444444444444444 11111111111 1111 55555555555 1111 1111111 111
lowQualScore : 00000 1111111111 4 1 8888888888 2 0 3 4444 2 222 2 66666 0 11 444 5555 2 2 2 5 0 5555 1 44 33 0 44444444444444 11111 77777 3 3 6666 0 77 4 77777 2 33 7 3 6 9 3 777 444 555 3 2 2 66 1 0 2 2 33 1 2 33 22 5555 444 1111111 2 2 6666 3 44 5 2 33 999999999 2 33 5555 444444 33 4 55 2 2 2 33 1111111111111 2 2 444 999999999999999999999999999999999 77777777777 1111 1 22222222222 2222 5555555 777
lowQualScore : ..... .......... . . .......... . . . .... . ... . ..... . .. ... .... . . . . . .... . .. .. . .............. ..... ..... . . .... . .. . ..... . .. . . . . . ... ... ... . . . .. . . . . .. . . .. .. .... ... ....... . . .... . .. . . .. ......... . .. .... ...... .. . .. . . . .. ............. . . ... ................................. ........... .... . ........... .... ....... ...
lowQualScore : 00000 9999999999 5 0 2222222222 7 3 4 9999 7 777 5 77777 3 11 777 7777 7 7 7 3 8 7777 5 33 77 8 88888888888888 44444 11111 1 1 5555 4 55 5 00000 3 55 2 1 2 2 1 888 333 444 1 1 9 33 5 7 7 7 77 5 7 66 55 7777 777 3333333 9 9 5555 1 22 4 4 22 444444444 4 22 3333 444444 44 5 66 4 4 4 22 0000000000000 4 4 444 888888888888888888888888888888888 33333333333 4444 0 44444444444 1111 5555555 555
consensus : NNTATATCAGGAAAAAA-----CGCTATAAATGTCTTAAA-AA-----ATAAAATNATTTT-----T----AAAATGGA-TAAAAAGCATC--TCATTATCATTA-ATAAAT--A-AA-TCCGAATGGTTTGGTA---TGTCAAA----TCCACC-AAAA-CGTGA-CAA-AATCGATATT----TAAATCGGAGTG--GTAAACT-----T------GAAA-----TCCCCATTCTA-----AAAATAGA-CA-GCA----CTTAAATACTGCTTGACGAC--CNTCACATCGTCATTCGGACTCTTTCTA-AGATGAAAC-A-A-TTT-T-ACNACGTGT---AAA-CCTG-TA--TAACGGATCAAATCG-A-AATCA--AAATGAAAT-CAC-GTGACTCATTCGATAC----GTCACAA---AA-------TATGTTGCAATTTTAAGCGGG-AAA-TCTATTTTAGT----C-T--AACCTAGGCGCGTAGCCCAAGTTAGGAAAT-CC--CTTTTCAATA---------TAT-TATTTTGGCATG--TTTAAAT----AGA------T--ATCCTTT--TGGCAAT-ACGGG-GTC-AGT--GAGTATAT---A---------AT-AGGCATGATATA-TT---GGAAAAA---------A-------A----------CG---GTTT-----------TA-A--AANTTTGAA-----T--G--AA----ATTCC-A--T--AAGA---AAACTGCATATTG
Reference ( family-154 ) : NNTATATCAGGAAAAAA-----CGCTATAAATGTCTTAAA-AA-----ATAAAATNATTTT-----T----AAAATGGA-TAAAAAGCATC--TCATTATCATTA-ATAAAT--A-AA-TCCGAATGGTTTGGTA---TGTCAAA----TCCACC-AAAA-CGTGA-CAA-AATCGATATT----TAAATCGGAGTG--GTAAACT-----T------GAAA-----TCCCCATTCTA-----AAAATAGA-CA-GCA----CTTAAATACTGCTTGACGAC--CNTCACATCGTCATTCGGACTCTTTCTA-AGATGAAAC-A-A-TTT-T-ACNACGTGT---AAA-CCTG-TA--TAACGGATCAAATCG-A-AATCA--AAATGAAAT-CAC-GTGACTCATTCGATAC----GTCACAA---AA-------TATGTTGCAATTTTAAGCGGG-AAA-TCTATTTTAGT----C-T--AACCTAGGCGCGTAGCCCAAGTTAGGAAAT-CC--CTTTTCAATA---------TAT-TATTTTGGCATG--TTTAAAT----AGA------T--ATCCTTT--TGGCAAT-ACGGG-GTC-AGT--GAGTATAT---A---------AT-AGGCATGATATA-TT---GGAAAAA---------A-------A----------CG---GTTT-----------TA-A--AANTTTGAA-----T--G--AA----ATTCC-A--T--AAGA---AAACTGCATATTG
gi|1 : TATGTCAGGAAAAAA-----CGCTATAAATGTCTTAAA-AA------TGAAATTATTTT-----T----AAAATAGT-TAAAT-TCATC--TCTTTATCATTA-ATAAATTAA-AG-TCCGAAAGGCTTAGCA---TGTCAAA----TCTACC-AAAAACGTGA-CAA-AATCGTTATT----TGAATCGGAGTG--G------------------GAAA-----TCCCAATTCTA-----AAAATAGA-CA-GCA----CTTAAATACAGCTAGACGAT--CGTCACATCGTCATTCAGACTCTTTCTA-AGATGAAAC-A-A-TTT-TTATTTAATGT---AAA-CATG-TA--TAACGGATCAAACTG-A-AATCA--AAATGAAAT-CAC-GTGACTCATTTAATAC----GTCACAA---AA-------TATGTCGCAATTTTAAGCGAG-AAA-TCTATGTTAGT----C-T--AACCTAGGCGCGTAGCCCAAGGTAGGAAAT-CC--CTTTTCAATATAGTACATGTAT-TATTTTGGCATG--TTTAAAT----ATT------T--ATCCTTT--CAGCAAT-ATGGG-CAC-AA-------ATAG---A---------AT-AAGTA-GACATA-T
gi|10 : aagggagAAT--A-AAATCCAAAACATCTCGTA---TGTCAAAAGATTCTGCC-AAAA-AGGGA-CAA-AATAAATATT-----AAATTTGAGTG--GTAAACT-----TAAAACTGAAA-----TTCCAATTCTA-----TAAATAGA-CA-GCA----CTTATATTCTGCTTGACAAC--CTTTGCATGATCATCC------TTTTTA-AGATGAAAC-A-A-TTT-T-ACTACGTGT---AAA-CCTA-TA--TAGC-----AAATTA-A-AATCA--AAATGAAAT-CAT-GTGACTGATTTAACAC----GTCACAA---AA-------TATGTTGTAATTTTAAGCAAG-AAA-TGTATTTTAGT----C-T--AACCTAGGTATGTAGCCCAAGTTAGGAAAT-TC--TTTTTCAAAT---------TAT-TGTTTTGGCATG--TTTTAAT----AGA------T--TTCGTTT--TGATAAT-ACGGG-GTA-AGT----ATATAT---C---------ATAAGGCA--ATATA-TTATGGAAAAAA---------A-------A----------TG---GTTT-----------TA-GCCAATTTTAAA-----------AA----ATCCTGA--T--AActttcggggggtggggtgggggggggggggaatttttatagccaaatttaatttttttaaaatcctgataaattcccttaa
gi|11 : AAAGTTATTTTAAAGTT----AATATTGACTATGAAGTGTT--AAAGTATCATTT-GTGACT--A-AAATAGAAATTGTTTAA-A---CTTCAAA----TCAGCC-AATC-CCTGA-CGA-AAACAATATTCTTTTAGA--GAAGTGCAATCGGCA-----C------GGAA-----TCCTATTTCTA-----AAATTAGATCACGCA----C----GCACTATTCAACGAC--CTTCAACTTATTATTCTGACCCATTTTA-TGATAAACCGA-A-TTT-C-ACAATATGTCAGAAA------TA--TAACGGATCAGATCA-A-AATTA--AGTTGAGGT-CA---TAA-----TCGATAC----GCAAGAA---AA-------TATATTGTAATTTTTAGCGGATAAA---TGATTTAAT----CTT--AGTCTTGGCGTGTAA----------------------TTTCAATA---------TCT-TATTTAGGCATAATTTTAAA-----AGATACATGT--ATCATCA--TGTCAGTAAC--G-ATCAAAC--GAGTATAT-------------CT-CAGTATGAT----TT---GGAAatatcctttaa
gi|12 : TATATCAGGAAAAAA-----TGCTATACATATCTTAAA-TA-----ATAAGGTAATTTT-----T----AAAATGAA-TAAACAGCATC--TCCTTACTATTA-ATAAAT--A-AA---------ATTTGGTA----ATTAAA----TCCATC-AAAA-CATGA-CAA-AATCGATATC----CAAA--GTAGTG--GTAAACT-----T------GAAA------CGACATT-TA-----AA
gi|12 : gggaaGT---AAA-CTTG--A---AACG----ACATTT-A-AAT-A--CTACAAAAT-TAC-GTGGCTCGTATAATAC----GTCACAA---AA-------TATGTTGCAATTTTAAGCGGG-AAA-TCTATTTTAGT----C-T--AACCTAGGCATGTAACCCAAGTTAGGAATC-CC--CTTTTCAATA---------TAG-TATTTTGAAATG--TTTAAAT----AGA------T--ATTCTTA--CGACAAC-TTGGGAGTC-GGT--GAGTATGT-------------TT-AGGCATGGTATA-TT---tactacaaaattacgtggctcgtataatacgtcacaaaatatgttgcaattttaagcgggaaatctattttagtctaacctaggcatgtaacccaagttaggaatccccttttcaatatagtattttgaaatgtttaaatagatattcttacgacaacttgggagtcggtgagtatgtttaggcatggtatatt
gi|13 : gggaatatatcaggaaaaaatgctatacatatcttaaataataaggtaatttttaaaatgaataaacagcatctccttactattaataaataaaatttggtaattaaatccatcaaaacatgacaaaatcgatatccaaagtagtgATCAGGAATAAAT----CTCTATAAATGTATT------------TAAAATTATTTT-----TTTTTAAAACA-A-TAGAAATCACC--TCATTATCAT-----AACT--A-AA-T----------------------AAA----TCGACC-AAAA-CGTGA-CAA-AGTCTATATT----TTGATCTGAGTG--GTAAACT-----T------AAAACAAAATCTCCATTCTA-----AAAATAGT-CA-GCA----CTTAAATAATGATTAACGAC--CTTCAC------------ACTCTTTCTA-TGATGAAAC-ATA-TTC-T-ACACCATAT---AAA-CCAG-TA--TGATGGATC----C----AATCA--AAATGAAAT-CAA-GTGACTCATTTGACAG----GTCATAA---AACTACTTGTATGTTGCAA----------G-GAA-TCTATTT
gi|14 : taaaggttgcaaA--TAACG-ATCAATTTG-C-ATTCA--AAATGAAAT-CCC-GTTACTCTTTTAATAC----GTCACAA---AAA------TATGTCACACTTTTAAACGGG-AAA-TCTATTTTAGTTGATC-T--AACTTAGGCCCGTAGCCAAAGTTAGGAAAT-GC--CTTTTCAATA---------TTTATATTTTGACAGG--TTTAAAC----ATA------T--ATA--TT--TGGCAAT-ACGGA-GTC-GGT--GAGTATAT---ACCGGTATATAT-AGGCCTGTTATA-TT---AGAAAAA---------ATATATTTA----------AGCTAATTT-----------TA-A--AAGTCCAGA-----T-----AA----ATTCC-C--TTAAAGATACAAACTG
gi|15 : ATATCAGAAAAAAA-----TTATATAAATGTTTTAAA-AAGAACAACAAACTAATTAT-----T----GAAATTGA-TAAAAAGAATA--TTATTATCATTA-ATAAAG--A-AA---------ATCTG-----------AA----TTCACC-AAAA-TGTGA-CAA-AAGTGAT-TT----TAAATTGGAGTG--GTAAACT-----T------GAAACGAAATCACCATTCTA-----AAAATAGA-CA-GCA----ATTAACAACTGTTTGATGAT--CTTCACATCGTCATTTGGACTCTTTCTA-AGATGAAAC-A-A-TTTAT-ACTACGTAT---A-----TG-TA--TTATGGATCAAATTG-A-AATCA--AAATGAAAT-CAC-Gaaaataacttttttcaattatcaaaagg
gi|16 : aagagagcGGAAAGCA-----TGCTAGAAATGTCTTAAA-AA-----ATAAAATAATCAT-----T----AAATTGGA-TAAAA-TCATC--TAATTATTATTA-ATAAATC-A-AA-TTAAAATGGCTTGGTA---TGGCAAA----TCCACC-AAAA-CGTGA-CAA-AATCAATATT----TAAGTTGAAGTG--GTAAACA-----T------GAAACAAAATCCCCATTCTA-----AATATATA-CA-GCA----CTTAACTACTGCT----GA---------AT-GTCATTCAGACTCTTTTTA-AGATGAAAT-A-GTTTT-T-AATATGTGT---AAA-CCTG-TA--T
gi|17 : tgttaaagCGGACCAAATTG-A-AATTA--ATATAAAAC-CCT-TCTAATCATTTAATAC----ATCATAA---AA-------ATTGTTGCACTTTTAAGTGGA-AAAATCCATTTCAGT----C-T--AACCTAGGCGCGTAGCCCAAGTTAGGAAAT-CC--CTTTTTTATA---------TAT-TATTTTGACATG--TTTAGAT----AGA------T--ATCCTTT--AAGCAAA-ACCAG-GTC-AGT--GAGTATAT-------------AT-AGGCATATTGTA-TT---TGAAAAA---------A-------A----------TG---TTTT-----------TA-GCCAATTTTAA
gi|18 : TATATCAGAAAAAAAAACAACGCTATAAATGTCTTAAA-AA-----ATAAAATAATTAT-----T----AAAATGAA-TGAAAGGCATC--TCATTATCATTA-ATTAATA-A-AA-ACCGAATAGTTTATTA---TGTCAAA----TCCACA-ATAA-CGTGA-CAA-AATTGATATC----TAATTTTTAGTG--GTAAACTTTAA-T------GAAA-----TCCCCATTCTT-----AAAATAGA-CA-GCA----CTT-AATACTGCTTGA--------------TGCCATTCGGA--CTTTCTATATATG--GC-A-A-TTttttttttaaaaat
gi|19 : agggagTG-T---TAACGAATCAAATTG-A-AATCA--AAAT-AGATACAC-GCGATTCATTCAGTAC----GTCACAA---AA-------TA
gi|19 : tAAAT-CC--CTTTTCGATG---------TAT-TATTTTTGCATG--TTTAAAA----AGATACTAGT--ATCCTTT--TGGCAAT-ACGGG-GTC-ATT--GAGTATAT-------------AT-AGACATGATATA-TA---GGGAAAA---------A-------ATGTTTTTAGCCA---ATTT-----------TA-A--AAGTTTAAA--------G--AACCTGATTCC-ATTT--AAGA---GAaagcctataaaatcccttttcgatgtattatttttgcatgtttaaaaagatactagtatccttttggcaatacggggtcattgagtatatatagacatgatatatagggaaaaaatgtttttagccaattttaaaagtttaaagaacctgattccatttaagagatatgtgta
gi|2 : ttgttaacgaatcaaattgaaatcaaaatagatacacgcgattcattcagtacgtcacaaaataaagcctataTATATCAAGAAAAAA-----TGCTTTAAATGTTTTAAA-GC-----ATAGCATTATTTT-----T----TAAATGGA-TAAAAAGCAAC--TCATAATCA----ATAGA------G-TCAGAATGGTTTGGTA---TATCAAA----TCCCCCCAAAA-CTTGA-CAA-AATCAATGTT----TTAATAGGAGTT--G-AAA-------T------GAAA-----TCCCCACTCTACTCTAAAAATAGA-CA-GCAGTATTTTAA---CTGCTTGGTAAC--CATCACATCTTCATTCAGACTCTTTCTA-AAA-AAAAA-A-A-CTG-T-AC---GTGT---AAAACCTA-CA--TGATGAAACAAATTG-A-A-TTA--AAATCAA---CAT-ATGATTCATTTGATAT----ATCGCAG---A--------TGTCTTTGAAATTTAAGCGGG-AAA-TTTGTTATAGT----C-T--AACCTTGGCGCATAGCCCAAGTTAGGAAAC-CC--CATTTCATTA---------TTT-TATCTTGGCATG--TTTAAAA----ATA------T--ATTCTTT--AGGCGAT-ATGAG-GAT-GAT--GATTAT-T---AT--------AT-AGGCATGGTATA-TT---TGAtatgtgta
gi|20 : gaaTCATTTGATAC----GTCACAA---AA-------TGTGTTGCACTTTTAAACGGG-AAA-TCTATTTTAGT----C-T--AACCTAGGCGTTTAGTCCAAGTTAGGAAAT-AT--CTTTTTAATA---------TAG-TATTTTGGCATG--ATTAAAT----ATA------T--ATCAATG--TGGCAGT-TTAGG-GTC-AGA--GAGTATAT-------------AT-AGGCATGATATA-TT---GAAAAAA---------A-------T----------TT---GTTTTTAGCCAATTATA-A--AATTTTGAAAATCCT--GATAA----ATTCC-ggggatgggagggggggatgtttaaagctaatttgaaaaaaaatttgaaaaatcctgatatgctccctttaa
gi|21 : TATATGAGGAAAAA------TGCTATACAAGTATTAAA-G------------TTATTTT-----T----AAAATGGA-TAAAA------------TATCATTA-ATAAAT--A-AAATCCGAATGGTTTGGTA---TGTCAAA----TACAAT-AAAA-TGTGA-CAA-AATTTATATC----TGAATTGGAGTG--GTATA-T-----T------GActtta
gi|22 : --TGGCAAC-ATGAA-GTC-AGT--GAGTACAT--------------------ATGATATACTC---GGAGAAA---------A-------A----------AG---ATTT-----------CGCC--AATTTTGAA-----------AA----ATCCgtccgatattttaggataaatcaattaacactgattatttaaatgctgtcatataaataaagttatttaaagaactgttgttcgg
gi|24 : tggttataTATATTGGGAAAACA-----CGCTATAAATGTCTGAAA-AA-----------------------T----AAAATGGA-TAAAAAGCATCTATGATTAGCATTA-ATTAGG--A-AC-TCCtgatatactacctttacagggagagtatggaagcttaaagttgatctgattttaacgagattgta
gi|24 : gggagAATTAGGAACT-CC--CTCTTCAATA---------TTC-TATTTTGGCATG--TTTAAActcttcaatattctattttggcatgtttaaa
gi|3 : gggagtatattgggaaaacacgctataaatgtctgaaaaataaaatggataaaaagcatctatgattagcattTATATCAGGCAAAAA-----AGCTATAAATGTCTTAAA-AA-----ATAAAATAACTTT-----T----AAAATGGA-TAAAAAGCATT--CCATTATCATTA-ATAAAT--A-AA-TCCCAATGATTTGGTA---TGTCAAA----TACACC-AAAC-CGTGA-CAC-AGTTGATATC----TAAATTGGAGCG--G--------------------AA-----TCTGCATTCTA-----GAAATAGA-AA-GCA----CTGAAATGCTGCTTGATGAA--TGTTACATCGTCGTTCGGACTCTTTCTA-CGATGAAAC-A-A-TTT-T-ACTACATGT---TAA-CCTG-TA--CAACGGATCAAACTG-A-AATCA--AAATGTAAT-TAC-ATCACTTATTCAATGC----ATCACAA---AA-------TATGTTGCAACTTTAAGCAGG-AAA-TCTATTTTAGT----C-T--AACCTAGGCGCTTAGCCCAAGTAAGGAAAC-CC--CTTTTCAATA---------TAT-TATTTTGGCATG--TTTAAAT----AGA------T--ATCATTT--TGGCATT-GTGGG-ATC-AGT--GAGTATATAAAA---------AT-AGGCTTGTCATA-TT---GGAAAAA---------A-------A----------CA---GTTT-----------TA-A--AAGTTTGAA-----TAGG--AA----ATTAC-A--T--AAGA---AAACTGCATATTG
gi|4 : atTAAATCAGGAAAAAT-----CGCTGTATATG----------------------CATTTT-----T----AAA-TGAA-TACAAAGAACA--TCATTATC--TA--TAAATG-A-AA-TTGGAACGATCCGTTAAATTGTAAAA----AAAACA-AAAA-AAAAAACAACAACAAATATT----TACACCGGAGTG--TTGAACC-----T------AAAA-----T------------------GTAAA-C---CA----C-------CAGTTCGACTGC--ACTTACTTTGTCCTTCCGACTCT----A-AGATGAACC-A-A-TTT-CGACAAAATGT---AAC-CATG-TAA-TCGTGGATCAAATCGCACAATTATTATATTAAAT-CAC-GTGACTCACTC--------------------A-------TGTGTTTCAATTTTAACTGGC-AAC-TGTAATTTAGT----T-CAGAACATGGGCGCATAG-----GTTAGGAAATCCC--CTTTTCAACA---------TAT-TAGTTTGGCCTG--TTTAGAT----GTA------T--ATCCTTA--TGGCAAT-AATAG-ATC-AGC--GATTATAG---A---------A--AAGCATGATATA-TT---GGAAAGA---------A-------A----------AT---GTTT-----------T
gi|5 : ttaaaggttaTATATCAGGAAAAAT-----CGTTATTACTGTTTTTAA-AA-----A---AAT-----------T----AAACTTGA-AACAAAGCAAT--TCATTATCATTA-ATAATT--AGAA-TTTGAATGGTTTGGTT---TATCAAA----TCCACC-AAAA-CTTAA-GAATAAACAACATT----TTTATCGAGGTG--GTGAACT-----T------TAA-------TCAAATTCTA-----AAAATAGA-TA-GCA----TTGAAATACTGCTTGACGAC--CCTCAAATCTTTATCCGGACATTTTTTG-AGATGAAAC-ATA-TTA-A-ACAATATGT---AAA-CAAG-TATTTAA--GATCGAATCG-A-GGCCA--AAA------------TGACTCATCTGTTAC----GTCCCGA---AA-------CACGTTGCAAATTTAAGTCGG-AA---CAATTTTAGT----C-T--AATTCAGACGCGCAGGCCTAGTTAG---AT-CTAACTTTTCAATG---------TAT-T-TTTT-ACATG--TTTAAGT----AGA------T--GTTTTTTA-TAGCAAT-ACGGG-GTC-AGTAAGAATATAT---ACAT------GT-AGGCCTGGTATA-TT---AGAGCAA---------A-------G----------TG---ATttgtcaattccaaaatttagagaaatcgagggtctggagtaataaaactttatttccatgcttaaaaa
gi|6 : caaaggtcgTCTGGGGGAAA-----TGCTTTATCTGTCTCAAATAA-----ATAAAATTATTTT----------AAAATGGA-TATA--GCATC--TCATTATCAT-------A---A-AA-TTCACTTGGTTTGGTA---TGTCAAA----TCAACC-AAAA-CCTGG-CAA-TTTCGATATT-----AAATTGGACTG--GTAAACTGGAAAC------GAAA-----TCCCCATTCTA-----AAAAAAGA-CA-ACA----CTTACCTACTGCTTGATGAC--CCTCGTATCGTCATTATGACTCTTTCTA-AGACGAAAC-ATG-TTT-A-ACTATGCGT---AAG-CCTG-TA--TAATGAATCAAATTG-A-AATCA--AAATAAAAT-CAT-GTAACTCTTTCAATATAAAAGT-A-AA---AA-------TATGTTGCAATTTTAAGCGGG-AAA-TCAATTTTAGT----A-T--AACATATGCACATAG----------------CC--CTTTTTAATA---------TAT-TATTTTGGTATG--TTT-AAT----AGA------C--ACTATTT--AAGCAAT-ATGGG-GTC-TGT--GATTATAT-------------AT-AGGTATGATATA-TT---GGAAAAGCCAGATTT-A-------A----------TT---ATTT-----------TA-A--AAATgtattcaatatacttcctttaataaataattaaatat
gi|7 : aaagggagtgttTAGCCCAAGTAAGGAAAC-CC--CTTTTCAATA---------TAT-TATTTTGGCATG--TTTAAAT----AGA------T--ATCATTT--TGGCATT-GTGGG-ATC-AGT--GAGTATATAAAA---------AT-AGGCTTGTCATA-TT---GGAAAAA---------A-------A----------CA---GTTT-----------TA-A--AAGTTTGAA-----TAGG--AA----ATTAC-A--T--AAGA---AAACTGCATATTGcgctatttattccctttaa
gi|8 : AATTAGGAACT-CC--CTCTTCAATA---------TTC-TATTTTGGCATG--TTTAAATTATAAGA------T--ATCCTTT--TGGCAAT-ACAGT-GCC-AGC--GAGTATAT-------------AT-AGGCAGGACCTA-TT---GGAAAacttactctaaaggttatgcacataaaatggtgcttgtataccgatccaatgctgtaattatttaagagttattaaattaacactcatcaaaatatggacaatagtttattacgagacacaaaaaagtatttttaatctttatatttgtctcgataaacattctgaacatagctttgcatttccagaaatatccacgcatgcacatggagggtgaaataaaaattaataacatacgcacaggcaattgtcataaacaataaatgaagaatgaacttgcaatattattttattaggtaaagattccatactgaagtcggatacccatgtcaacaactggatggaaa
gi|9 : tagcattTATGTCTGGGAAAAA-----TGCTATAAATGTCTAAAA-AA-----ATAAAATGA---------------------A-TACAAAGAA----TCATTATTGTTAGATACAA--A-AG-TT----TGTTTT-------TTTCAAA----TCCATC-AAAT-CATGA-CAA-AAACATTATT----T-------AGTG--GTAAAATTAAAAT------GAAA-----CCCCCATTTTG-----AAATAAGA-CC-GCG----CGTA---ACTGTTTGA-GATGATTTCACCTGTTCATTATCACTTTTTCTA-AGATAAAACAA-A-TTC-T-GCAATATGT---AAA-ATTACTA--AGACTGATCATATCA-A-AATTA--AAATGAAAT--ACTGTGATTTATTTGATGC----ATTACAGTCTTA-------TATCTTTCAATTTTAAGCAGG-AAA-TTTATTTTAGT----C-T--GA-----GTGAGTAGGCCAAG-TA---------------CCGGTA---------TAT-TATTTT-GTATG--TTTAAAT----AGA------TAGATATATTAATGGCAAT-ACGGG-ATG-AGT--GAGTATA------------------------ATATA-TT---GGAAAAACTTGTTTTTG-------C----------CA---GTTT-----------TA-A--ATTTTTGAA-----gtttaaataatcccgataaattttgtttagagtagagaactcaacaaattttaaatggagtatatggaaattacatataaaagctgtaaatggagacttaaattcttaatctgttatgtacataaaatagtgtcaatgccttatttaacttaagagttattaaattaatactaataaaaaaatgacaacgatttatcgtgggacatgaaaaaatattgcgcaatatttacattggtctctgcaaacattccaagcataattttgtatttctgaaaatatccgtgcatccaactgccaattgaaataattatttaaaacacatgcacgggtatttttttttcacaaacaatatttttaagaatgaacatgtaatattatttattagat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): AAAGCTGCAAATGGACACTTTCTCTATATGTTATGCACATAAAAAAGTGCTTGTATACCCATTAAATGCCAGAATTAGCCTAAGGGTTATTTAGTTAACACTTAAAAAATTAATAGTACTT
Unaligned ( gi|25 ): TAAGTCCGATATTTTTAGAATAAAATATTCATCACTGATTATCTGAATGATATCATATAAATAAAGCTA
Unaligned ( gi|26 ): CAGTCTTTTTAGGATATGTAAACTCAATACATAATTGTTTGTCGGGAAAAAAT
Unaligned ( gi|27 ): CTGCGGGTTTTTTTTAATAATGAGGGCATAAGTCGATGAAACAT
Alignments
lowQualScore : 11111 1111111111 111 11111 22222222222222 22222 1111111 111111 4444444444444 444444444444444444444444444444444 11111111111 1111 55555555555 1111 1111111 111
lowQualScore : 00000 1111111111 4 1 8888888888 2 0 3 4444 2 222 2 66666 0 11 444 5555 2 2 2 5 0 5555 1 44 33 0 44444444444444 11111 77777 3 3 6666 0 77 4 77777 2 33 7 3 6 9 3 777 444 555 3 2 2 66 1 0 2 2 33 1 2 33 22 5555 444 1111111 2 2 6666 3 44 5 2 33 999999999 2 33 5555 444444 33 4 55 2 2 2 33 1111111111111 2 2 444 999999999999999999999999999999999 77777777777 1111 1 22222222222 2222 5555555 777
lowQualScore : ..... .......... . . .......... . . . .... . ... . ..... . .. ... .... . . . . . .... . .. .. . .............. ..... ..... . . .... . .. . ..... . .. . . . . . ... ... ... . . . .. . . . . .. . . .. .. .... ... ....... . . .... . .. . . .. ......... . .. .... ...... .. . .. . . . .. ............. . . ... ................................. ........... .... . ........... .... ....... ...
lowQualScore : 00000 9999999999 5 0 2222222222 7 3 4 9999 7 777 5 77777 3 11 777 7777 7 7 7 3 8 7777 5 33 77 8 88888888888888 44444 11111 1 1 5555 4 55 5 00000 3 55 2 1 2 2 1 888 333 444 1 1 9 33 5 7 7 7 77 5 7 66 55 7777 777 3333333 9 9 5555 1 22 4 4 22 444444444 4 22 3333 444444 44 5 66 4 4 4 22 0000000000000 4 4 444 888888888888888888888888888888888 33333333333 4444 0 44444444444 1111 5555555 555
consensus : NNTATATCAGGAAAAAA-----CGCTATAAATGTCTTAAA-AA-----ATAAAATNATTTT-----T----AAAATGGA-TAAAAAGCATC--TCATTATCATTA-ATAAAT--A-AA-TCCGAATGGTTTGGTA---TGTCAAA----TCCACC-AAAA-CGTGA-CAA-AATCGATATT----TAAATCGGAGTG--GTAAACT-----T------GAAA-----TCCCCATTCTA-----AAAATAGA-CA-GCA----CTTAAATACTGCTTGACGAC--CNTCACATCGTCATTCGGACTCTTTCTA-AGATGAAAC-A-A-TTT-T-ACNACGTGT---AAA-CCTG-TA--TAACGGATCAAATCG-A-AATCA--AAATGAAAT-CAC-GTGACTCATTCGATAC----GTCACAA---AA-------TATGTTGCAATTTTAAGCGGG-AAA-TCTATTTTAGT----C-T--AACCTAGGCGCGTAGCCCAAGTTAGGAAAT-CC--CTTTTCAATA---------TAT-TATTTTGGCATG--TTTAAAT----AGA------T--ATCCTTT--TGGCAAT-ACGGG-GTC-AGT--GAGTATAT---A---------AT-AGGCATGATATA-TT---GGAAAAA---------A-------A----------CG---GTTT-----------TA-A--AANTTTGAA-----T--G--AA----ATTCC-A--T--AAGA---AAACTGCATATTG
Reference ( family-154 ) : NNTATATCAGGAAAAAA-----CGCTATAAATGTCTTAAA-AA-----ATAAAATNATTTT-----T----AAAATGGA-TAAAAAGCATC--TCATTATCATTA-ATAAAT--A-AA-TCCGAATGGTTTGGTA---TGTCAAA----TCCACC-AAAA-CGTGA-CAA-AATCGATATT----TAAATCGGAGTG--GTAAACT-----T------GAAA-----TCCCCATTCTA-----AAAATAGA-CA-GCA----CTTAAATACTGCTTGACGAC--CNTCACATCGTCATTCGGACTCTTTCTA-AGATGAAAC-A-A-TTT-T-ACNACGTGT---AAA-CCTG-TA--TAACGGATCAAATCG-A-AATCA--AAATGAAAT-CAC-GTGACTCATTCGATAC----GTCACAA---AA-------TATGTTGCAATTTTAAGCGGG-AAA-TCTATTTTAGT----C-T--AACCTAGGCGCGTAGCCCAAGTTAGGAAAT-CC--CTTTTCAATA---------TAT-TATTTTGGCATG--TTTAAAT----AGA------T--ATCCTTT--TGGCAAT-ACGGG-GTC-AGT--GAGTATAT---A---------AT-AGGCATGATATA-TT---GGAAAAA---------A-------A----------CG---GTTT-----------TA-A--AANTTTGAA-----T--G--AA----ATTCC-A--T--AAGA---AAACTGCATATTG
gi|1 : TATGTCAGGAAAAAA-----CGCTATAAATGTCTTAAA-AA------TGAAATTATTTT-----T----AAAATAGT-TAAAT-TCATC--TCTTTATCATTA-ATAAATTAA-AG-TCCGAAAGGCTTAGCA---TGTCAAA----TCTACC-AAAAACGTGA-CAA-AATCGTTATT----TGAATCGGAGTG--G------------------GAAA-----TCCCAATTCTA-----AAAATAGA-CA-GCA----CTTAAATACAGCTAGACGAT--CGTCACATCGTCATTCAGACTCTTTCTA-AGATGAAAC-A-A-TTT-TTATTTAATGT---AAA-CATG-TA--TAACGGATCAAACTG-A-AATCA--AAATGAAAT-CAC-GTGACTCATTTAATAC----GTCACAA---AA-------TATGTCGCAATTTTAAGCGAG-AAA-TCTATGTTAGT----C-T--AACCTAGGCGCGTAGCCCAAGGTAGGAAAT-CC--CTTTTCAATATAGTACATGTAT-TATTTTGGCATG--TTTAAAT----ATT------T--ATCCTTT--CAGCAAT-ATGGG-CAC-AA-------ATAG---A---------AT-AAGTA-GACATA-T
gi|10 : aagggagAAT--A-AAATCCAAAACATCTCGTA---TGTCAAAAGATTCTGCC-AAAA-AGGGA-CAA-AATAAATATT-----AAATTTGAGTG--GTAAACT-----TAAAACTGAAA-----TTCCAATTCTA-----TAAATAGA-CA-GCA----CTTATATTCTGCTTGACAAC--CTTTGCATGATCATCC------TTTTTA-AGATGAAAC-A-A-TTT-T-ACTACGTGT---AAA-CCTA-TA--TAGC-----AAATTA-A-AATCA--AAATGAAAT-CAT-GTGACTGATTTAACAC----GTCACAA---AA-------TATGTTGTAATTTTAAGCAAG-AAA-TGTATTTTAGT----C-T--AACCTAGGTATGTAGCCCAAGTTAGGAAAT-TC--TTTTTCAAAT---------TAT-TGTTTTGGCATG--TTTTAAT----AGA------T--TTCGTTT--TGATAAT-ACGGG-GTA-AGT----ATATAT---C---------ATAAGGCA--ATATA-TTATGGAAAAAA---------A-------A----------TG---GTTT-----------TA-GCCAATTTTAAA-----------AA----ATCCTGA--T--AActttcggggggtggggtgggggggggggggaatttttatagccaaatttaatttttttaaaatcctgataaattcccttaa
gi|11 : AAAGTTATTTTAAAGTT----AATATTGACTATGAAGTGTT--AAAGTATCATTT-GTGACT--A-AAATAGAAATTGTTTAA-A---CTTCAAA----TCAGCC-AATC-CCTGA-CGA-AAACAATATTCTTTTAGA--GAAGTGCAATCGGCA-----C------GGAA-----TCCTATTTCTA-----AAATTAGATCACGCA----C----GCACTATTCAACGAC--CTTCAACTTATTATTCTGACCCATTTTA-TGATAAACCGA-A-TTT-C-ACAATATGTCAGAAA------TA--TAACGGATCAGATCA-A-AATTA--AGTTGAGGT-CA---TAA-----TCGATAC----GCAAGAA---AA-------TATATTGTAATTTTTAGCGGATAAA---TGATTTAAT----CTT--AGTCTTGGCGTGTAA----------------------TTTCAATA---------TCT-TATTTAGGCATAATTTTAAA-----AGATACATGT--ATCATCA--TGTCAGTAAC--G-ATCAAAC--GAGTATAT-------------CT-CAGTATGAT----TT---GGAAatatcctttaa
gi|12 : TATATCAGGAAAAAA-----TGCTATACATATCTTAAA-TA-----ATAAGGTAATTTT-----T----AAAATGAA-TAAACAGCATC--TCCTTACTATTA-ATAAAT--A-AA---------ATTTGGTA----ATTAAA----TCCATC-AAAA-CATGA-CAA-AATCGATATC----CAAA--GTAGTG--GTAAACT-----T------GAAA------CGACATT-TA-----AA
gi|12 : gggaaGT---AAA-CTTG--A---AACG----ACATTT-A-AAT-A--CTACAAAAT-TAC-GTGGCTCGTATAATAC----GTCACAA---AA-------TATGTTGCAATTTTAAGCGGG-AAA-TCTATTTTAGT----C-T--AACCTAGGCATGTAACCCAAGTTAGGAATC-CC--CTTTTCAATA---------TAG-TATTTTGAAATG--TTTAAAT----AGA------T--ATTCTTA--CGACAAC-TTGGGAGTC-GGT--GAGTATGT-------------TT-AGGCATGGTATA-TT---tactacaaaattacgtggctcgtataatacgtcacaaaatatgttgcaattttaagcgggaaatctattttagtctaacctaggcatgtaacccaagttaggaatccccttttcaatatagtattttgaaatgtttaaatagatattcttacgacaacttgggagtcggtgagtatgtttaggcatggtatatt
gi|13 : gggaatatatcaggaaaaaatgctatacatatcttaaataataaggtaatttttaaaatgaataaacagcatctccttactattaataaataaaatttggtaattaaatccatcaaaacatgacaaaatcgatatccaaagtagtgATCAGGAATAAAT----CTCTATAAATGTATT------------TAAAATTATTTT-----TTTTTAAAACA-A-TAGAAATCACC--TCATTATCAT-----AACT--A-AA-T----------------------AAA----TCGACC-AAAA-CGTGA-CAA-AGTCTATATT----TTGATCTGAGTG--GTAAACT-----T------AAAACAAAATCTCCATTCTA-----AAAATAGT-CA-GCA----CTTAAATAATGATTAACGAC--CTTCAC------------ACTCTTTCTA-TGATGAAAC-ATA-TTC-T-ACACCATAT---AAA-CCAG-TA--TGATGGATC----C----AATCA--AAATGAAAT-CAA-GTGACTCATTTGACAG----GTCATAA---AACTACTTGTATGTTGCAA----------G-GAA-TCTATTT
gi|14 : taaaggttgcaaA--TAACG-ATCAATTTG-C-ATTCA--AAATGAAAT-CCC-GTTACTCTTTTAATAC----GTCACAA---AAA------TATGTCACACTTTTAAACGGG-AAA-TCTATTTTAGTTGATC-T--AACTTAGGCCCGTAGCCAAAGTTAGGAAAT-GC--CTTTTCAATA---------TTTATATTTTGACAGG--TTTAAAC----ATA------T--ATA--TT--TGGCAAT-ACGGA-GTC-GGT--GAGTATAT---ACCGGTATATAT-AGGCCTGTTATA-TT---AGAAAAA---------ATATATTTA----------AGCTAATTT-----------TA-A--AAGTCCAGA-----T-----AA----ATTCC-C--TTAAAGATACAAACTG
gi|15 : ATATCAGAAAAAAA-----TTATATAAATGTTTTAAA-AAGAACAACAAACTAATTAT-----T----GAAATTGA-TAAAAAGAATA--TTATTATCATTA-ATAAAG--A-AA---------ATCTG-----------AA----TTCACC-AAAA-TGTGA-CAA-AAGTGAT-TT----TAAATTGGAGTG--GTAAACT-----T------GAAACGAAATCACCATTCTA-----AAAATAGA-CA-GCA----ATTAACAACTGTTTGATGAT--CTTCACATCGTCATTTGGACTCTTTCTA-AGATGAAAC-A-A-TTTAT-ACTACGTAT---A-----TG-TA--TTATGGATCAAATTG-A-AATCA--AAATGAAAT-CAC-Gaaaataacttttttcaattatcaaaagg
gi|16 : aagagagcGGAAAGCA-----TGCTAGAAATGTCTTAAA-AA-----ATAAAATAATCAT-----T----AAATTGGA-TAAAA-TCATC--TAATTATTATTA-ATAAATC-A-AA-TTAAAATGGCTTGGTA---TGGCAAA----TCCACC-AAAA-CGTGA-CAA-AATCAATATT----TAAGTTGAAGTG--GTAAACA-----T------GAAACAAAATCCCCATTCTA-----AATATATA-CA-GCA----CTTAACTACTGCT----GA---------AT-GTCATTCAGACTCTTTTTA-AGATGAAAT-A-GTTTT-T-AATATGTGT---AAA-CCTG-TA--T
gi|17 : tgttaaagCGGACCAAATTG-A-AATTA--ATATAAAAC-CCT-TCTAATCATTTAATAC----ATCATAA---AA-------ATTGTTGCACTTTTAAGTGGA-AAAATCCATTTCAGT----C-T--AACCTAGGCGCGTAGCCCAAGTTAGGAAAT-CC--CTTTTTTATA---------TAT-TATTTTGACATG--TTTAGAT----AGA------T--ATCCTTT--AAGCAAA-ACCAG-GTC-AGT--GAGTATAT-------------AT-AGGCATATTGTA-TT---TGAAAAA---------A-------A----------TG---TTTT-----------TA-GCCAATTTTAA
gi|18 : TATATCAGAAAAAAAAACAACGCTATAAATGTCTTAAA-AA-----ATAAAATAATTAT-----T----AAAATGAA-TGAAAGGCATC--TCATTATCATTA-ATTAATA-A-AA-ACCGAATAGTTTATTA---TGTCAAA----TCCACA-ATAA-CGTGA-CAA-AATTGATATC----TAATTTTTAGTG--GTAAACTTTAA-T------GAAA-----TCCCCATTCTT-----AAAATAGA-CA-GCA----CTT-AATACTGCTTGA--------------TGCCATTCGGA--CTTTCTATATATG--GC-A-A-TTttttttttaaaaat
gi|19 : agggagTG-T---TAACGAATCAAATTG-A-AATCA--AAAT-AGATACAC-GCGATTCATTCAGTAC----GTCACAA---AA-------TA
gi|19 : tAAAT-CC--CTTTTCGATG---------TAT-TATTTTTGCATG--TTTAAAA----AGATACTAGT--ATCCTTT--TGGCAAT-ACGGG-GTC-ATT--GAGTATAT-------------AT-AGACATGATATA-TA---GGGAAAA---------A-------ATGTTTTTAGCCA---ATTT-----------TA-A--AAGTTTAAA--------G--AACCTGATTCC-ATTT--AAGA---GAaagcctataaaatcccttttcgatgtattatttttgcatgtttaaaaagatactagtatccttttggcaatacggggtcattgagtatatatagacatgatatatagggaaaaaatgtttttagccaattttaaaagtttaaagaacctgattccatttaagagatatgtgta
gi|2 : ttgttaacgaatcaaattgaaatcaaaatagatacacgcgattcattcagtacgtcacaaaataaagcctataTATATCAAGAAAAAA-----TGCTTTAAATGTTTTAAA-GC-----ATAGCATTATTTT-----T----TAAATGGA-TAAAAAGCAAC--TCATAATCA----ATAGA------G-TCAGAATGGTTTGGTA---TATCAAA----TCCCCCCAAAA-CTTGA-CAA-AATCAATGTT----TTAATAGGAGTT--G-AAA-------T------GAAA-----TCCCCACTCTACTCTAAAAATAGA-CA-GCAGTATTTTAA---CTGCTTGGTAAC--CATCACATCTTCATTCAGACTCTTTCTA-AAA-AAAAA-A-A-CTG-T-AC---GTGT---AAAACCTA-CA--TGATGAAACAAATTG-A-A-TTA--AAATCAA---CAT-ATGATTCATTTGATAT----ATCGCAG---A--------TGTCTTTGAAATTTAAGCGGG-AAA-TTTGTTATAGT----C-T--AACCTTGGCGCATAGCCCAAGTTAGGAAAC-CC--CATTTCATTA---------TTT-TATCTTGGCATG--TTTAAAA----ATA------T--ATTCTTT--AGGCGAT-ATGAG-GAT-GAT--GATTAT-T---AT--------AT-AGGCATGGTATA-TT---TGAtatgtgta
gi|20 : gaaTCATTTGATAC----GTCACAA---AA-------TGTGTTGCACTTTTAAACGGG-AAA-TCTATTTTAGT----C-T--AACCTAGGCGTTTAGTCCAAGTTAGGAAAT-AT--CTTTTTAATA---------TAG-TATTTTGGCATG--ATTAAAT----ATA------T--ATCAATG--TGGCAGT-TTAGG-GTC-AGA--GAGTATAT-------------AT-AGGCATGATATA-TT---GAAAAAA---------A-------T----------TT---GTTTTTAGCCAATTATA-A--AATTTTGAAAATCCT--GATAA----ATTCC-ggggatgggagggggggatgtttaaagctaatttgaaaaaaaatttgaaaaatcctgatatgctccctttaa
gi|21 : TATATGAGGAAAAA------TGCTATACAAGTATTAAA-G------------TTATTTT-----T----AAAATGGA-TAAAA------------TATCATTA-ATAAAT--A-AAATCCGAATGGTTTGGTA---TGTCAAA----TACAAT-AAAA-TGTGA-CAA-AATTTATATC----TGAATTGGAGTG--GTATA-T-----T------GActtta
gi|22 : --TGGCAAC-ATGAA-GTC-AGT--GAGTACAT--------------------ATGATATACTC---GGAGAAA---------A-------A----------AG---ATTT-----------CGCC--AATTTTGAA-----------AA----ATCCgtccgatattttaggataaatcaattaacactgattatttaaatgctgtcatataaataaagttatttaaagaactgttgttcgg
gi|24 : tggttataTATATTGGGAAAACA-----CGCTATAAATGTCTGAAA-AA-----------------------T----AAAATGGA-TAAAAAGCATCTATGATTAGCATTA-ATTAGG--A-AC-TCCtgatatactacctttacagggagagtatggaagcttaaagttgatctgattttaacgagattgta
gi|24 : gggagAATTAGGAACT-CC--CTCTTCAATA---------TTC-TATTTTGGCATG--TTTAAActcttcaatattctattttggcatgtttaaa
gi|3 : gggagtatattgggaaaacacgctataaatgtctgaaaaataaaatggataaaaagcatctatgattagcattTATATCAGGCAAAAA-----AGCTATAAATGTCTTAAA-AA-----ATAAAATAACTTT-----T----AAAATGGA-TAAAAAGCATT--CCATTATCATTA-ATAAAT--A-AA-TCCCAATGATTTGGTA---TGTCAAA----TACACC-AAAC-CGTGA-CAC-AGTTGATATC----TAAATTGGAGCG--G--------------------AA-----TCTGCATTCTA-----GAAATAGA-AA-GCA----CTGAAATGCTGCTTGATGAA--TGTTACATCGTCGTTCGGACTCTTTCTA-CGATGAAAC-A-A-TTT-T-ACTACATGT---TAA-CCTG-TA--CAACGGATCAAACTG-A-AATCA--AAATGTAAT-TAC-ATCACTTATTCAATGC----ATCACAA---AA-------TATGTTGCAACTTTAAGCAGG-AAA-TCTATTTTAGT----C-T--AACCTAGGCGCTTAGCCCAAGTAAGGAAAC-CC--CTTTTCAATA---------TAT-TATTTTGGCATG--TTTAAAT----AGA------T--ATCATTT--TGGCATT-GTGGG-ATC-AGT--GAGTATATAAAA---------AT-AGGCTTGTCATA-TT---GGAAAAA---------A-------A----------CA---GTTT-----------TA-A--AAGTTTGAA-----TAGG--AA----ATTAC-A--T--AAGA---AAACTGCATATTG
gi|4 : atTAAATCAGGAAAAAT-----CGCTGTATATG----------------------CATTTT-----T----AAA-TGAA-TACAAAGAACA--TCATTATC--TA--TAAATG-A-AA-TTGGAACGATCCGTTAAATTGTAAAA----AAAACA-AAAA-AAAAAACAACAACAAATATT----TACACCGGAGTG--TTGAACC-----T------AAAA-----T------------------GTAAA-C---CA----C-------CAGTTCGACTGC--ACTTACTTTGTCCTTCCGACTCT----A-AGATGAACC-A-A-TTT-CGACAAAATGT---AAC-CATG-TAA-TCGTGGATCAAATCGCACAATTATTATATTAAAT-CAC-GTGACTCACTC--------------------A-------TGTGTTTCAATTTTAACTGGC-AAC-TGTAATTTAGT----T-CAGAACATGGGCGCATAG-----GTTAGGAAATCCC--CTTTTCAACA---------TAT-TAGTTTGGCCTG--TTTAGAT----GTA------T--ATCCTTA--TGGCAAT-AATAG-ATC-AGC--GATTATAG---A---------A--AAGCATGATATA-TT---GGAAAGA---------A-------A----------AT---GTTT-----------T
gi|5 : ttaaaggttaTATATCAGGAAAAAT-----CGTTATTACTGTTTTTAA-AA-----A---AAT-----------T----AAACTTGA-AACAAAGCAAT--TCATTATCATTA-ATAATT--AGAA-TTTGAATGGTTTGGTT---TATCAAA----TCCACC-AAAA-CTTAA-GAATAAACAACATT----TTTATCGAGGTG--GTGAACT-----T------TAA-------TCAAATTCTA-----AAAATAGA-TA-GCA----TTGAAATACTGCTTGACGAC--CCTCAAATCTTTATCCGGACATTTTTTG-AGATGAAAC-ATA-TTA-A-ACAATATGT---AAA-CAAG-TATTTAA--GATCGAATCG-A-GGCCA--AAA------------TGACTCATCTGTTAC----GTCCCGA---AA-------CACGTTGCAAATTTAAGTCGG-AA---CAATTTTAGT----C-T--AATTCAGACGCGCAGGCCTAGTTAG---AT-CTAACTTTTCAATG---------TAT-T-TTTT-ACATG--TTTAAGT----AGA------T--GTTTTTTA-TAGCAAT-ACGGG-GTC-AGTAAGAATATAT---ACAT------GT-AGGCCTGGTATA-TT---AGAGCAA---------A-------G----------TG---ATttgtcaattccaaaatttagagaaatcgagggtctggagtaataaaactttatttccatgcttaaaaa
gi|6 : caaaggtcgTCTGGGGGAAA-----TGCTTTATCTGTCTCAAATAA-----ATAAAATTATTTT----------AAAATGGA-TATA--GCATC--TCATTATCAT-------A---A-AA-TTCACTTGGTTTGGTA---TGTCAAA----TCAACC-AAAA-CCTGG-CAA-TTTCGATATT-----AAATTGGACTG--GTAAACTGGAAAC------GAAA-----TCCCCATTCTA-----AAAAAAGA-CA-ACA----CTTACCTACTGCTTGATGAC--CCTCGTATCGTCATTATGACTCTTTCTA-AGACGAAAC-ATG-TTT-A-ACTATGCGT---AAG-CCTG-TA--TAATGAATCAAATTG-A-AATCA--AAATAAAAT-CAT-GTAACTCTTTCAATATAAAAGT-A-AA---AA-------TATGTTGCAATTTTAAGCGGG-AAA-TCAATTTTAGT----A-T--AACATATGCACATAG----------------CC--CTTTTTAATA---------TAT-TATTTTGGTATG--TTT-AAT----AGA------C--ACTATTT--AAGCAAT-ATGGG-GTC-TGT--GATTATAT-------------AT-AGGTATGATATA-TT---GGAAAAGCCAGATTT-A-------A----------TT---ATTT-----------TA-A--AAATgtattcaatatacttcctttaataaataattaaatat
gi|7 : aaagggagtgttTAGCCCAAGTAAGGAAAC-CC--CTTTTCAATA---------TAT-TATTTTGGCATG--TTTAAAT----AGA------T--ATCATTT--TGGCATT-GTGGG-ATC-AGT--GAGTATATAAAA---------AT-AGGCTTGTCATA-TT---GGAAAAA---------A-------A----------CA---GTTT-----------TA-A--AAGTTTGAA-----TAGG--AA----ATTAC-A--T--AAGA---AAACTGCATATTGcgctatttattccctttaa
gi|8 : AATTAGGAACT-CC--CTCTTCAATA---------TTC-TATTTTGGCATG--TTTAAATTATAAGA------T--ATCCTTT--TGGCAAT-ACAGT-GCC-AGC--GAGTATAT-------------AT-AGGCAGGACCTA-TT---GGAAAacttactctaaaggttatgcacataaaatggtgcttgtataccgatccaatgctgtaattatttaagagttattaaattaacactcatcaaaatatggacaatagtttattacgagacacaaaaaagtatttttaatctttatatttgtctcgataaacattctgaacatagctttgcatttccagaaatatccacgcatgcacatggagggtgaaataaaaattaataacatacgcacaggcaattgtcataaacaataaatgaagaatgaacttgcaatattattttattaggtaaagattccatactgaagtcggatacccatgtcaacaactggatggaaa
gi|9 : tagcattTATGTCTGGGAAAAA-----TGCTATAAATGTCTAAAA-AA-----ATAAAATGA---------------------A-TACAAAGAA----TCATTATTGTTAGATACAA--A-AG-TT----TGTTTT-------TTTCAAA----TCCATC-AAAT-CATGA-CAA-AAACATTATT----T-------AGTG--GTAAAATTAAAAT------GAAA-----CCCCCATTTTG-----AAATAAGA-CC-GCG----CGTA---ACTGTTTGA-GATGATTTCACCTGTTCATTATCACTTTTTCTA-AGATAAAACAA-A-TTC-T-GCAATATGT---AAA-ATTACTA--AGACTGATCATATCA-A-AATTA--AAATGAAAT--ACTGTGATTTATTTGATGC----ATTACAGTCTTA-------TATCTTTCAATTTTAAGCAGG-AAA-TTTATTTTAGT----C-T--GA-----GTGAGTAGGCCAAG-TA---------------CCGGTA---------TAT-TATTTT-GTATG--TTTAAAT----AGA------TAGATATATTAATGGCAAT-ACGGG-ATG-AGT--GAGTATA------------------------ATATA-TT---GGAAAAACTTGTTTTTG-------C----------CA---GTTT-----------TA-A--ATTTTTGAA-----gtttaaataatcccgataaattttgtttagagtagagaactcaacaaattttaaatggagtatatggaaattacatataaaagctgtaaatggagacttaaattcttaatctgttatgtacataaaatagtgtcaatgccttatttaacttaagagttattaaattaatactaataaaaaaatgacaacgatttatcgtgggacatgaaaaaatattgcgcaatatttacattggtctctgcaaacattccaagcataattttgtatttctgaaaatatccgtgcatccaactgccaattgaaataattatttaaaacacatgcacgggtatttttttttcacaaacaatatttttaagaatgaacatgtaatattatttattagat
blockSeqs : AACAA AAGAACAAC T T AAAGTT C A TCTA G TC G ATCCA GT AAT AGAT C . A C CTTT A TT CA CTTAAAACT CAAAA CTCTA T C GTAT TA C TGATT A GA T T G T T AT TAC CAG A C C TT G C C TT G A CT TA AAAA TCT CTACTTG T A TGAT T AG C C AA . A AT TATA TACATG AG G AA A A A AA ACCGGTATAT A C . ATATATTTAAGCTA TTAGCCAATTA GCC G AATCCTGAT CCTG CTTA .
blockSeqs : T TAAAT A T TTTTT . A TT . TA . ATAGA GT . . . . . T . A TC . CTGGAAAC CGAAA . . . . AA C CCT C TA G . A T . CG AAT . . T . A G . . . G . T CG . . A . . . . . C . . . . . . TACTAG . A A . . . . AAAA . . . AATGTTTTTAGCCA . CC T TAGG . ATTT .
blockSeqs : . TAAT T T T . A TC . TG . ATCCG GT . . . . . . . A TT . ATTAAAAT CAAAA . . . . AC C CCT A CG A . . T . T ACC . . C . . G . . . A . C TA . . . . . . . . C . . . . . . . . C . . . . . ACAT . . . CTTGTTTTTGCCA . A G TAGG . AT .
blockSeqs : . AAAT A A T . A CC . T . TTAA TT . . . . . . . T TT . CTTTAAT . . . . . AC T CCT A TG G . . . . C TAC . . C . . G . . . G . A TG . . . . . . . . C . . . . . . . . C . . . . . AAAA . . . CCAGATTTAATT . A T T . AT
blockSeqs : . AAAT A A T . G TA . T . ACCG GT . . . . . . . A TT . CAC . . . . . AA T TCT A CT A . . . . T TAT . . C . . A . . . G . C TA . . . . . . . . C . . . . . . . . C . . . . . AT . . . AATG . A T G .
blockSeqs : . GCAT A A T . A TC . T . TCAG GT . . . . . . . A TA . CTT . . . . . AA T CCA A CG G . . . . T TAC . . C . . A . . . G . C TA . . . . . . . . T . . . . . . . . C . . . . . C . . . ATTT . A G . .
blockSeqs : . AAAT T T T . A TC . T . TCCC GT . . . . . . . A TT . CTT . . . . . AA C ATG T TG C . . . . T AAA . . A . . G . . . A . T CA . . . . . . . . C . . . . . . . . A . . . . . A . . . AAAG . A A
blockSeqs : . AAAT T T T . A AC . G . TTGG TT . . . . . . . T TT . CTT . . . . . CC C CAC A CT G . . . . T AAT . . A . . G . . . C . C TG . . . . . . . . G . . . . . . . . A . . . . . . . . . AACA . A G
blockSeqs : . AAA A T T . A TT . T . TTTG GT . . . . . . . G CC . CAT . . . . . G T CCC A CG T . . . . A TAT . . C . . G . . . G . T TG . . . . . . . . C . . . . . . . . C . . . . . . . . . AAAT . A T
blockSeqs : . AA C T T . A CA . G . TTCA GT . . . . . . . A TC . CCT . . . . . A . CCC C GT T . . . . A AAT . . T . . A . . . T . C CA . . . . . . . . G . . . . . . . . T . . . . . . . . . AGTG .
blockSeqs : . T T T T . A AT . T . TT A . . . . . . . A TT . CTT . . . . . . . . . G . . . . . T . . . . . . G . . . A . C TG . . . . . . . . . . . . . . . . . A . . . . . . . . . AACA
blockSeqs : . G G . T . . TC . T . T . . . . . . . . T . . TT . . . . . . . . . . . . . . . . . . . . . . . . G . T CA . . . . . . . . . . . . . . . . . A . . . . . . . . .
blockSeqs : . . . . . . . . . A . . . . . . . . . . A . . T . . . . . . . . . . . TG . . . . . . . . . . . . . . C . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . . . . . . T . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqCons : AAAT****** T** CTT*********** T** ********* ************* *** A*** TG********* AT*****
originalCons : NNTATATCAGGAAAAAA-----CGCTATAAATGTCTTAAA-AA-----ATAAAATNATTTT-----T----AAAATGGA-TAAAAAGCATC--TCATTATCATTA-ATAAAT--A-AA-TCCGAATGGTTTGGTA---TGTCAAA----TCCACC-AAAA-CGTGA-CAA-AATCGATATT----TAAATCGGAGTG--GTAAACT-----T------GAAA-----TCCCCATTCTA-----AAAATAGA-CA-GCA----CTTAAATACTGCTTGACGAC--CNTCACATCGTCATTCGGACTCTTTCTA-AGATGAAAC-A-A-TTT-T-ACNACGTGT---AAA-CCTG-TA--TAACGGATCAAATCG-A-AATCA--AAATGAAAT-CAC-GTGACTCATTCGATAC----GTCACAA---AA-------TATGTTGCAATTTTAAGCGGG-AAA-TCTATTTTAGT----C-T--AACCTAGGCGCGTAGCCCAAGTTAGGAAAT-CC--CTTTTCAATA---------TAT-TATTTTGGCATG--TTTAAAT----AGA------T--ATCCTTT--TGGCAAT-ACGGG-GTC-AGT--GAGTATAT---A---------AT-AGGCATGATATA-TT---GGAAAAA---------A-------A----------CG---GTTT-----------TA-A--AANTTTGAA-----T--G--AA----ATTCC-A--T--AAGA---AAACTGCATATTG
finalCons : NNTATATCAGGAAAAAA-----CGCTATAAATGTCTTAAAAAAT------AAAATNATTTT-----T----AAAATGGA-TAAAAAGCATC--TCATTATCATTA-ATAAAT--A-AA-TCCGAATGGTTTGGTA---TGTCAAA----TCCACC-AAAA-CGTGA-CAA-AATCGATATT----TAAATCGGAGTG--GTAAACTT-----------GAAA-----TCCCCATTCTA-----AAAATAGA-CA-GCA----CTTAAATACTGCTTGACGAC--CNTCACATCGTCATTCGGACTCTTTCTA-AGATGAAAC-A-A-TTTT--ACNACGTGT---AAA-CCTG-TA--TAACGGATCAAATCG-A-AATCA--AAATGAAAT-CAC-GTGACTCATTCGATAC----GTCACAA---AA-------TATGTTGCAATTTTAAGCGGG-AAA-TCTATTTTAGT----C-T--AACCTAGGCGCGTAGCCCAAGTTAGGAAAT-CC--CTTTTCAATA---------TAT-TATTTTGGCATG--TTTAAAT----AGA------T--ATCCTTT--TGGCAAT-ACGGG-GTC-AGT--GAGTATAT-------------AT-AGGCATGATATA-TT---GGAAAAA---------A-------A----------CG---GTTT-----------TAA---AANTTTGAATG---------AA----ATTCCAT-----AAGA---AAACTGCATATTG
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): AAAGCTGCAAATGGACACTTTCTCTATATGTTATGCACATAAAAAAGTGCTTGTATACCCATTAAATGCCAGAATTAGCCTAAGGGTTATTTAGTTAACACTTAAAAAATTAATAGTACTT
Unaligned ( gi|25 ): TAAGTCCGATATTTTTAGAATAAAATATTCATCACTGATTATCTGAATGATATCATATAAATAAAGCTA
Unaligned ( gi|26 ): CAGTCTTTTTAGGATATGTAAACTCAATACATAATTGTTTGTCGGGAAAAAAT
Unaligned ( gi|27 ): CTGCGGGTTTTTTTTAATAATGAGGGCATAAGTCGATGAAACAT
Alignments
lowQualScore : 11111 1111111111 111 11111 22222222222222222222 11111 1111111 1111111111 11111111111111 444444444444444444444444444444444 11111111111 1111 55555555555 1111 1111111 111
lowQualScore : 00000 1111111111 4 1 8888888888 2 0 0 4444 2 222 2 66666 0 11 444 5555 2 2 2 5 0 5555 1 44 33 0 66666666666666666666 44444 77777 3 3 6666 0 77 6 5555 2 33 7 3 6 9 3 777 444 555 3 2 2 66 1 0 2 2 33 1 2 33 22 5555 444 1111111 2 2 6666 3 44 5 2 33 999999999 2 33 5555 777777 33 777777 4 55 2 2 2 33 0000000000 2 44444444444444 0 2 444 999999999999999999999999999999999 77777777777 1111 1 22222222222 2222 5555555 777
lowQualScore : ..... .......... . . .......... . . . .... . ... . ..... . .. ... .... . . . . . .... . .. .. . .................... ..... ..... . . .... . .. . .... . .. . . . . . ... ... ... . . . .. . . . . .. . . .. .. .... ... ....... . . .... . .. . . .. ......... . .. .... ...... .. ...... . .. . . . .. .......... . .............. . . ... ................................. ........... .... . ........... .... ....... ...
lowQualScore : 00000 9999999999 5 0 2222222222 7 3 1 9999 7 777 5 77777 3 11 777 7777 7 7 7 3 8 7777 5 33 77 8 99999999999999999999 33333 11111 1 1 5555 4 55 5 6666 3 55 2 1 2 2 1 888 333 444 1 1 9 33 5 7 7 7 77 5 7 66 55 7777 777 3333333 9 9 5555 1 22 4 4 22 444444444 4 22 3333 222222 44 222222 5 66 4 4 4 22 3333333333 4 55555555555555 3 5 444 888888888888888888888888888888888 33333333333 4444 0 44444444444 1111 5555555 555
consensus : NNTATATCAGGAAAAAA-----CGCTATAAATGTCTTAAA-AA-----ATAAAATNATTTT-----T----AAAATGGA-TAAAAAGCATC--TCATTATCATTA-ATAAAT--A-AA-TCCGAATGGTTTGGTA---TGTCAAA----TCCACC-AAAA-CGTGA-CAA-AATCGATATT----TAAATCGGAGTG--GTAAACT-----T------G-----AAA-----TCCCCATTCTA-----AAAATAGA-CA-GCA----CTTAAATACTGCTTGACGAC--CNTCACATCGTCATTCGGACTCTTTCTA-AGATGAAAC-A-A-TTT-T-ACNACGTGT---AAA-CCTG-TA--TAACGGATCAAATCG-A-AATCA--AAATGAAAT-CAC-GTGACTCATTCGATAC----GTCACAA---AA-------TATGTTGCAATTTTAAGCGGG-AAA-TCTATTTTAGT----C-T--AACCTAGGCGCGTAGCCCAAGTTAGGAAAT-CC--CTTTTCAATA---------TAT-TATTTTGGCATG--TTTAAAT----AGA------T--A------TCCTTT--TGGCAAT-ACGGG-GTC-AGT--GA----------GTA-TAT----A----T----AGGCATGATATA-TT---GGAAAAA---------A-------A----------CG---GTTT-----------TA-A--AANTTTGAA-----T--G--AA----ATTCC-A--T--AAGA---AAACTGCATATTG
Reference ( family-154 ) : NNTATATCAGGAAAAAA-----CGCTATAAATGTCTTAAA-AA-----ATAAAATNATTTT-----T----AAAATGGA-TAAAAAGCATC--TCATTATCATTA-ATAAAT--A-AA-TCCGAATGGTTTGGTA---TGTCAAA----TCCACC-AAAA-CGTGA-CAA-AATCGATATT----TAAATCGGAGTG--GTAAACT-----T------G-----AAA-----TCCCCATTCTA-----AAAATAGA-CA-GCA----CTTAAATACTGCTTGACGAC--CNTCACATCGTCATTCGGACTCTTTCTA-AGATGAAAC-A-A-TTT-T-ACNACGTGT---AAA-CCTG-TA--TAACGGATCAAATCG-A-AATCA--AAATGAAAT-CAC-GTGACTCATTCGATAC----GTCACAA---AA-------TATGTTGCAATTTTAAGCGGG-AAA-TCTATTTTAGT----C-T--AACCTAGGCGCGTAGCCCAAGTTAGGAAAT-CC--CTTTTCAATA---------TAT-TATTTTGGCATG--TTTAAAT----AGA------T--A------TCCTTT--TGGCAAT-ACGGG-GTC-AGT--GA----------GTA-TAT----A----T----AGGCATGATATA-TT---GGAAAAA---------A-------A----------CG---GTTT-----------TA-A--AANTTTGAA-----T--G--AA----ATTCC-A--T--AAGA---AAACTGCATATTG
gi|1 : TATGTCAGGAAAAAA-----CGCTATAAATGTCTTAAA-AA------TGAAATTATTTT-----T----AAAATAGT-TAAAT-TCATC--TCTTTATCATTA-ATAAATTAA-AG-TCCGAAAGGCTTAGCA---TGTCAAA----TCTACC-AAAAACGTGA-CAA-AATCGTTATT----TGAATCGGAGTG--G------------------G-----AAA-----TCCCAATTCTA-----AAAATAGA-CA-GCA----CTTAAATACAGCTAGACGAT--CGTCACATCGTCATTCAGACTCTTTCTA-AGATGAAAC-A-A-TTT-TTATTTAATGT---AAA-CATG-TA--TAACGGATCAAACTG-A-AATCA--AAATGAAAT-CAC-GTGACTCATTTAATAC----GTCACAA---AA-------TATGTCGCAATTTTAAGCGAG-AAA-TCTATGTTAGT----C-T--AACCTAGGCGCGTAGCCCAAGGTAGGAAAT-CC--CTTTTCAATATAGTACATGTAT-TATTTTGGCATG--TTTAAAT----ATT------T--A------TCCTTT--CAGCAAT-ATGGG-CAC-AAA--TA----------GAA-TAA----G----T----AGACAT
gi|10 : aagggagAAT--A-AAATCCAAAACATCTCGTA---TGTCAAAAGATTCTGCC-AAAA-AGGGA-CAA-AATAAATATT-----AAATTTGAGTG--GTAAACT-----TAAAACTG-----AAA-----TTCCAATTCTA-----TAAATAGA-CA-GCA----CTTATATTCTGCTTGACAAC--CTTTGCATGATCATCC------TTTTTA-AGATGAAAC-A-A-TTT-T-ACTACGTGT---AAA-CCTA-TA--TAGC-----AAATTA-A-AATCA--AAATGAAAT-CAT-GTGACTGATTTAACAC----GTCACAA---AA-------TATGTTGTAATTTTAAGCAAG-AAA-TGTATTTTAGT----C-T--AACCTAGGTATGTAGCCCAAGTTAGGAAAT-TC--TTTTTCAAAT---------TAT-TGTTTTGGCATG--TTTTAAT----AGA------T--T------TCGTTT--TGATAAT-ACGGG------GT--AA----------GTA-TAT----A----TCATAAGGCA--ATATA-TTATGGAAAAAA---------A-------A----------TG---GTTT-----------TA-GCCAATTTTAAA-----------AA----ATCCTGA--T--AAatctttcggggggtggggtgggggggggggggaatttttatagccaaatttaatttttttaaaatcctgataaattcccttaa
gi|11 : AAAGTTATTTTAAAGTT----AATATTGACTATGAAGTGTT--AAAGTATCATTT-GTGACT--A-AAATAGAAATTGTTTAA-A---CTTCAAA----TCAGCC-AATC-CCTGA-CGA-AAACAATATTCTTTTAGA--GAAGTGCAATCGGCA-----C------G-----GAA-----TCCTATTTCTA-----AAATTAGATCACGCA----C----GCACTATTCAACGAC--CTTCAACTTATTATTCTGACCCATTTTA-TGATAAACCGA-A-TTT-C-ACAATATGTCAGAAA------TA--TAACGGATCAGATCA-A-AATTA--AGTTGAGGT-CA---TAA-----TCGATAC----GCAAGAA---AA-------TATATTGTAATTTTTAGCGGATAAA---TGATTTAAT----CTT--AGTCTTGGCGTGTAA----------------------TTTCAATA---------TCT-TATTTAGGCATAATTTTAAA-----AGATACATGT--A------TCATCA--TGTCAGTAAC--G-ATCAAAC--GA----------GTA-TAT----C----T----CAGTATGAT----TT---GGAAatatcctttaa
gi|12 : TATATCAGGAAAAAA-----TGCTATACATATCTTAAA-TA-----ATAAGGTAATTTT-----T----AAAATGAA-TAAACAGCATC--TCCTTACTATTA-ATAAAT--A-AA---------ATTTGGTA----ATTAAA----TCCATC-AAAA-CATGA-CAA-AATCGATATC----CAAA--GTAGTG--GTAAACT-----T------G-----AAA------CGACATT-TA-----AA
gi|12 : gggaaGT---AAA-CTTG--A---AACG----ACATTT-A-AAT-A--CTACAAAAT-TAC-GTGGCTCGTATAATAC----GTCACAA---AA-------TATGTTGCAATTTTAAGCGGG-AAA-TCTATTTTAGT----C-T--AACCTAGGCATGTAACCCAAGTTAGGAATC-CC--CTTTTCAATA---------TAG-TATTTTGAAATG--TTTAAAT----AGA------T--A------TTCTTA--CGACAAC-TTGGGAGTC-GGT--GA----------GTA-TGT----T----T----AGGCATGGTATA-TT---tactacaaaattacgtggctcgtataatacgtcacaaaatatgttgcaattttaagcgggaaatctattttagtctaacctaggcatgtaacccaagttaggaatccccttttcaatatagtattttgaaatgtttaaatagatattcttacgacaacttgggagtcggtgagtatgtttaggcatggtatatt
gi|13 : gggaatatatcaggaaaaaatgctatacatatcttaaataataaggtaatttttaaaatgaataaacagcatctccttactattaataaataaaatttggtaattaaatccatcaaaacatgacaaaatcgatatccaaagtagtgATCAGGAATAAAT----CTCTATAAATGTATT------------TAAAATTATTTT-----TTTTTAAAACA-A-TAGAAATCACC--TCATTATCAT-----AACT--A-AA-T----------------------AAA----TCGACC-AAAA-CGTGA-CAA-AGTCTATATT----TTGATCTGAGTG--GTAAACT-----T------A-----AAACAAAATCTCCATTCTA-----AAAATAGT-CA-GCA----CTTAAATAATGATTAACGAC--CTTCAC------------ACTCTTTCTA-TGATGAAAC-ATA-TTC-T-ACACCATAT---AAA-CCAG-TA--TGATGGATC----C----AATCA--AAATGAAAT-CAA-GTGACTCATTTGACAG----GTCATAA---AACTACTTGTATGTTGCAA----------G-GAA-TCTATTT
gi|14 : taaaggttgcaaA--TAACG-ATCAATTTG-C-ATTCA--AAATGAAAT-CCC-GTTACTCTTTTAATAC----GTCACAA---AAA------TATGTCACACTTTTAAACGGG-AAA-TCTATTTTAGTTGATC-T--AACTTAGGCCCGTAGCCAAAGTTAGGAAAT-GC--CTTTTCAATA---------TTTATATTTTGACAGG--TTTAAAC----ATA------T--A------TA--TT--TGGCAAT-ACGGA-GTC-GGT--GAGTATATACCGGTA-TAT----A----T----AGGCCTGTTATA-TT---AGAAAAA---------ATATATTTA----------AGCTAATTT-----------TA-A--AAGTCCAGA-----T-----AA----ATTCC-C--TTAAAGATACAAACTG
gi|15 : ATATCAGAAAAAAA-----TTATATAAATGTTTTAAA-AAGAACAACAAACTAATTAT-----T----GAAATTGA-TAAAAAGAATA--TTATTATCATTA-ATAAAG--A-AA---------ATCTG-----------AA----TTCACC-AAAA-TGTGA-CAA-AAGTGAT-TT----TAAATTGGAGTG--GTAAACT-----T------G-----AAACGAAATCACCATTCTA-----AAAATAGA-CA-GCA----ATTAACAACTGTTTGATGAT--CTTCACATCGTCATTTGGACTCTTTCTA-AGATGAAAC-A-A-TTTAT-ACTACGTAT---A-----TG-TA--TTATGGATCAAATTG-A-AATCA--AAATGAAAT-CAC-Gaaaataacttttttcaattatcaaaagg
gi|16 : aagagagcGGAAAGCA-----TGCTAGAAATGTCTTAAA-AA-----ATAAAATAATCAT-----T----AAATTGGA-T-AAAATCATC--TAATTATTATTA-ATAAATC-A-AA-TTAAAATGGCTTGGTA---TGGCAAA----TCCACC-AAAA-CGTGA-CAA-AATCAATATT----TAAGTTGAAGTG--GTAAACA-----T------GAAACAAAA-----TCCCCATTCTA-----AATATATA-CA-GCA----CTTAACTACTGC-TGA------------AT-GTCATTCAGACTCTTTTTA-AGATGAAAT-A-GTTTT-T-AATATGTGT---AAA-CCTG-TA--T
gi|17 : tgttaaagCGGACCAAATTG-A-AATTA--ATATAAAAC-CCT-TCTAATCATTTAATAC----ATCATAA---AA-------ATTGTTGCACTTTTAAGTGGA-AAAATCCATTTCAGT----C-T--AACCTAGGCGCGTAGCCCAAGTTAGGAAAT-CC--CTTTTTTATA---------TAT-TATTTTGACATG--TTTAGAT----AGA------T--A------TCCTTT--AAGCAAA-ACCAG-GTC-AGT--GA----------GTA-TAT----A----T----AGGCATATTGTA-TT---TGAAAAA---------A-------A----------TG---TTTT-----------TA-GCCAATTTTAA
gi|18 : TATATCAGAAAAAAAAACAACGCTATAAATGTCTTAAA-AA-----ATAAAATAATTAT-----T----AAAATGAA-TGAAAGGCATC--TCATTATCATTA-ATTAATA-A-AA-ACCGAATAGTTTATTA---TGTCAAA----TCCACA-ATAA-CGTGA-CAA-AATTGATATC----TAATTTTTAGTG--GTAAACTTTAA-T------G-----AAA-----TCCCCATTCTT-----AAAATAGA-CA-GCA----CTT-AATACTGCTTGA--------------TGCCATTCGGA--CTTTCTATATATG--GC-A-A-TTttttttttaaaaat
gi|19 : agggagTG-T---TAACGAATCAAATTG-A-AATCA--AAAT-AGATACAC-GCGATTCATTCAGTAC----GTCACAA---AA-------TA
gi|19 : tAAAT-CC--CTTTTCGATG---------TAT-TATTTTTGCATG--TTTAAAA----AGA------T--ACTAGTATCCTTT--TGGCAAT-ACGGG-GTC-ATT--GA----------GTA-TAT----A----T----AGACATGATATA-TA---GGGAAAA---------A-------ATGTTTTTAGCCA---ATTT-----------TA-A--AAGTTTAAA--------G--AACCTGATTCC-ATTT--AAGA---GAaagcctataaaatcccttttcgatgtattatttttgcatgtttaaaaagatactagtatccttttggcaatacggggtcattgagtatatatagacatgatatatagggaaaaaatgtttttagccaattttaaaagtttaaagaacctgattccatttaagagatatgtgta
gi|2 : ttgttaacgaatcaaattgaaatcaaaatagatacacgcgattcattcagtacgtcacaaaataaagcctataTATATCAAGAAAAAA-----TGCTTTAAATGTTTTAAA-GC-----ATAGCATTATTTT-----T----TAAATGGA-TAAAAAGCAAC--TCATAATCA----ATAGA------G-TCAGAATGGTTTGGTA---TATCAAA----TCCCCCCAAAA-CTTGA-CAA-AATCAATGTT----TTAATAGGAGTT--G-AAA-------T------G-----AAA-----TCCCCACTCTACTCTAAAAATAGA-CA-GCAGTATTTTAA---CTGCTTGGTAAC--CATCACATCTTCATTCAGACTCTTTCTA-AAA-AAAAA-A-A-CTG-T-AC---GTGT---AAAACCTA-CA--TGATGAAACAAATTG-A-A-TTA--AAATCAA---CAT-ATGATTCATTTGATAT----ATCGCAG---A--------TGTCTTTGAAATTTAAGCGGG-AAA-TTTGTTATAGT----C-T--AACCTTGGCGCATAGCCCAAGTTAGGAAAC-CC--CATTTCATTA---------TTT-TATCTTGGCATG--TTTAAAA----ATA------T--A------TTCTTT--AGGCGAT-ATGAG-GAT-GAT--GA----------TTATTAT----A----T----AGGCATGGTATA-TT---TGAtatgtgta
gi|20 : gaaTCATTTGATAC----GTCACAA---AA-------TGTGTTGCACTTTTAAACGGG-AAA-TCTATTTTAGT----C-T--AACCTAGGCGTTTAGTCCAAGTTAGGAAAT-AT--CTTTTTAATA---------TAG-TATTTTGGCATG--ATTAAAT----ATA------T--A------TCAATG--TGGCAGT-TTAGG-GTC-AGA--GA----------GTA-TAT----A----T----AGGCATGATATA-TT---GAAAAAA---------A-------T----------TT---GTTTTTAGCCAATTATA-A--AATTTTGAAAATCCT--GATAA----ATTCC-ggggatgggagggggggatgtttaaagctaatttgaaaaaaaatttgaaaaatcctgatatgctccctttaa
gi|21 : TATATGAGGAAAAA------TGCTATACAAGTATTAAA-G------------TTATTTT-----T----AAAATGGA-TAAAA------------TATCATTA-ATAAAT--A-AAATCCGAATGGTTTGGTA---TGTCAAA----TACAAT-AAAA-TGTGA-CAA-AATTTATATC----TGAATTGGAGTG--GTATA-T-----T------G-----Acttta
gi|22 : --TGGCAAC-ATGAA-GTC-AGT--GA----------GTA-CAT------------------ATGATATACTC---GGAGAAA---------A-------A----------AG---ATTT-----------CGCC--AATTTTGAA-----------AA----ATCCgtccgatattttaggataaatcaattaacactgattatttaaatgctgtcatataaataaagttatttaaagaactgttgttcgg
gi|24 : tggttataTATATTGGGAAAACA-----CGCTATAAATGTCTGAAA-AA-----------------------T----AAAATGGA-TAAAAAGCATCTATGATTAGCATTA-ATTAGG--A-AC-TCCtgatatactacctttacagggagagtatggaagcttaaagttgatctgattttaacgagattgta
gi|24 : gggagAATTAGGAACT-CC--CTCTTCAATA---------TTC-TATTTTGGCATG--TTTAAActcttcaatattctattttggcatgtttaaa
gi|3 : gggagtatattgggaaaacacgctataaatgtctgaaaaataaaatggataaaaagcatctatgattagcattTATATCAGGCAAAAA-----AGCTATAAATGTCTTAAA-AA-----ATAAAATAACTTT-----T----AAAATGGA-TAAAAAGCATT--CCATTATCATTA-ATAAAT--A-AA-TCCCAATGATTTGGTA---TGTCAAA----TACACC-AAAC-CGTGA-CAC-AGTTGATATC----TAAATTGGAGCG--G-------------------------AA-----TCTGCATTCTA-----GAAATAGA-AA-GCA----CTGAAATGCTGCTTGATGAA--TGTTACATCGTCGTTCGGACTCTTTCTA-CGATGAAAC-A-A-TTT-T-ACTACATGT---TAA-CCTG-TA--CAACGGATCAAACTG-A-AATCA--AAATGTAAT-TAC-ATCACTTATTCAATGC----ATCACAA---AA-------TATGTTGCAACTTTAAGCAGG-AAA-TCTATTTTAGT----C-T--AACCTAGGCGCTTAGCCCAAGTAAGGAAAC-CC--CTTTTCAATA---------TAT-TATTTTGGCATG--TTTAAAT----AGA------T--A------TCATTT--TGGCATT-GTGGG-ATC-AGT--GA----------GTA-TATAAAAA----T----AGGCTTGTCATA-TT---GGAAAAA---------A-------A----------CA---GTTT-----------TA-A--AAGTTTGAA-----TAGG--AA----ATTAC-A--T--AAGA---AAACTGCATATTG
gi|4 : atTAAATCAGGAAAAAT-----CGCTGTATATG----------------------CATTTT-----T----AAA-TGAA-TACAAAGAACA--TCATTATC--TA--TAAATG-A-AA-TTGGAACGATCCGTTAAATTGTAAAA----AAAACA-AAAA-AAAAAACAACAACAAATATT----TACACCGGAGTG--TTGAACC-----T------A-----AAA-----T------------------GTAAA-C---CA----C-------CAGTTCGACTGC--ACTTACTTTGTCCTTCCGACTCT----A-AGATGAACC-A-A-TTT-CGACAAAATGT---AAC-CATG-TAA-TCGTGGATCAAATCGCACAATTATTATATTAAAT-CAC-GTGACTCACTC--------------------A-------TGTGTTTCAATTTTAACTGGC-AAC-TGTAATTTAGT----T-CAGAACATGGGCGCATAG-----GTTAGGAAATCCC--CTTTTCAACA---------TAT-TAGTTTGGCCTG--TTTAGAT----GTA------T--A------TCCTTA--TGGCAAT-AATAG-ATC-AGC--GA----------TTA-TAG----A----A----AAGCATGATATA-TT---GGAAAGA---------A-------A----------AT---GTTT-----------T
gi|5 : ttaaaggttaTATATCAGGAAAAAT-----CGTTATTACTGTTTTTAA-AA-----A---AAT-----------T----AAACTTGA-AACAAAGCAAT--TCATTATCATTA-ATAATT--AGAA-TTTGAATGGTTTGGTT---TATCAAA----TCCACC-AAAA-CTTAA-GAATAAACAACATT----TTTATCGAGGTG--GTGAACT-----T------T-----AA-------TCAAATTCTA-----AAAATAGA-TA-GCA----TTGAAATACTGCTTGACGAC--CCTCAAATCTTTATCCGGACATTTTTTG-AGATGAAAC-ATA-TTA-A-ACAATATGT---AAA-CAAG-TATTTAA--GATCGAATCG-A-GGCCA--AAA------------TGACTCATCTGTTAC----GTCCCGA---AA-------CACGTTGCAAATTTAAGTCGG-AA---CAATTTTAGT----C-T--AATTCAGACGCGCAGGCCTAGTTAG---AT-CTAACTTTTCAATG---------TAT-T-TTTT-ACATG--TTTAAGT----AGA------T--G------TTTTTTA-TAGCAAT-ACGGG-GTC-AGTAAGA----------ATA-TAT----ACATGT----AGGCCTGGTATA-TT---AGAGCAA---------A-------G----------TG---ATttgtcaattccaaaatttagagaaatcgagggtctggagtaataaaactttatttccatgcttaaaaa
gi|6 : caaaggtcgTCTGGGGGAAA-----TGCTTTATCTGTCTCAAATAA-----ATAAAATTATTTT----------AAAATGGA-TATA--GCATC--TCATTATCAT-------A---A-AA-TTCACTTGGTTTGGTA---TGTCAAA----TCAACC-AAAA-CCTGG-CAA-TTTCGATATT-----AAATTGGACTG--GTAAACTGGAAAC------G-----AAA-----TCCCCATTCTA-----AAAAAAGA-CA-ACA----CTTACCTACTGCTTGATGAC--CCTCGTATCGTCATTATGACTCTTTCTA-AGACGAAAC-ATG-TTT-A-ACTATGCGT---AAG-CCTG-TA--TAATGAATCAAATTG-A-AATCA--AAATAAAAT-CAT-GTAACTCTTTCAATATAAAAGT-A-AA---AA-------TATGTTGCAATTTTAAGCGGG-AAA-TCAATTTTAGT----A-T--AACATATGCACATAG----------------CC--CTTTTTAATA---------TAT-TATTTTGGTATG--TTT-AAT----AGA------C--A------CTATTT--AAGCAAT-ATGGG-GTC-TGT--GA----------TTA-TAT----A----T----AGGTATGATATA-TT---GGAAAAGCCAGATTT-A-------A----------TT---ATTT-----------TA-A--AAATgtattcaatatacttcctttaataaataattaaatat
gi|7 : aaagggagtgttTAGCCCAAGTAAGGAAAC-CC--CTTTTCAATA---------TAT-TATTTTGGCATG--TTTAAAT----AGA------T--A------TCATTT--TGGCATT-GTGGG-ATC-AGT--GA----------GTA-TATAAAAA----T----AGGCTTGTCATA-TT---GGAAAAA---------A-------A----------CA---GTTT-----------TA-A--AAGTTTGAA-----TAGG--AA----ATTAC-A--T--AAGA---AAACTGCATATTGcgctatttattccctttaa
gi|8 : AATTAGGAACT-CC--CTCTTCAATA---------TTC-TATTTTGGCATG--TTTAAATTATAAGA------T--A------TCCTTT--TGGCAAT-ACAGT-GCC-AGC--GA----------GTA-TAT----A----T----AGGCAGGACCTA-TT---GGAAAacttactctaaaggttatgcacataaaatggtgcttgtataccgatccaatgctgtaattatttaagagttattaaattaacactcatcaaaatatggacaatagtttattacgagacacaaaaaagtatttttaatctttatatttgtctcgataaacattctgaacatagctttgcatttccagaaatatccacgcatgcacatggagggtgaaataaaaattaataacatacgcacaggcaattgtcataaacaataaatgaagaatgaacttgcaatattattttattaggtaaagattccatactgaagtcggatacccatgtcaacaactggatggaaa
gi|9 : tagcattTATGTCTGGGAAAAA-----TGCTATAAATGTCTAAAA-AA-----ATAAAATGA---------------------A-TACAAAGAA----TCATTATTGTTAGATACAA--A-AG-TT----TGTTTT-------TTTCAAA----TCCATC-AAAT-CATGA-CAA-AAACATTATT----T-------AGTG--GTAAAATTAAAAT------G-----AAA-----CCCCCATTTTG-----AAATAAGA-CC-GCG----CGTA---ACTGTTTGA-GATGATTTCACCTGTTCATTATCACTTTTTCTA-AGATAAAACAA-A-TTC-T-GCAATATGT---AAA-ATTACTA--AGACTGATCATATCA-A-AATTA--AAATGAAAT--ACTGTGATTTATTTGATGC----ATTACAGTCTTA-------TATCTTTCAATTTTAAGCAGG-AAA-TTTATTTTAGT----C-T--GA-----GTGAGTAGGCCAAG-TA---------------CCGGTA---------TAT-TATTTT-GTATG--TTTAAAT----AGA------TAGA------TATATTAATGGCAAT-ACGGG-ATG-AGT--GA----------GTA-TA----------------------ATATA-TT---GGAAAAACTTGTTTTTG-------C----------CA---GTTT-----------TA-A--ATTTTTGAA-----gtttaaataatcccgataaattttgtttagagtagagaactcaacaaattttaaatggagtatatggaaattacatataaaagctgtaaatggagacttaaattcttaatctgttatgtacataaaatagtgtcaatgccttatttaacttaagagttattaaattaatactaataaaaaaatgacaacgatttatcgtgggacatgaaaaaatattgcgcaatatttacattggtctctgcaaacattccaagcataattttgtatttctgaaaatatccgtgcatccaactgccaattgaaataattatttaaaacacatgcacgggtatttttttttcacaaacaatatttttaagaatgaacatgtaatattatttattagat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): AAAGCTGCAAATGGACACTTTCTCTATATGTTATGCACATAAAAAAGTGCTTGTATACCCATTAAATGCCAGAATTAGCCTAAGGGTTATTTAGTTAACACTTAAAAAATTAATAGTACTT
Unaligned ( gi|25 ): TAAGTCCGATATTTTTAGAATAAAATATTCATCACTGATTATCTGAATGATATCATATAAATAAAGCTA
Unaligned ( gi|26 ): CAGTCTTTTTAGGATATGTAAACTCAATACATAATTGTTTGTCGGGAAAAAAT
Unaligned ( gi|27 ): CTGCGGGTTTTTTTTAATAATGAGGGCATAAGTCGATGAAACAT