lowQualScore : 33 222 222 2222222 1 1111 222 111111 222 44444444444444444 222222222 111 111111 111 7777777777777777777777777777 11 1111111 11 11 11 11111 111 1111 111
lowQualScore : 00 7 666 1 66 333 4 88 5555555 777 2 66 4 6666 777 4 8 888 999999 4 6 4 666 1 00000000000000000 888888888 5 222 5 5 555555 2 7 5 000 1 3 0000000000000000000000000000 999 3 3 9999 3 3 33 6 3 44 77 6 0000000 6666 55 55 7777 22 55 3 55 55 55 7 0 00 88888 888 55 7 3 66 222 55 3 3 3 7 777 1111 4 3 55 3 333 1 66666 1 3 1 3
lowQualScore : .. . ... . .. ... . .. ....... ... . .. . .... ... . . ... ...... . . . ... . ................. ......... . ... . . ...... . . . ... . . ............................ ... . . .... . . .. . . .. .. . ....... .... .. .. .... .. .. . .. .. .. . . .. ..... ... .. . . .. ... .. . . . . ... .... . . .. . ... . ..... . . . .
lowQualScore : 33 5 000 7 11 333 4 33 4444444 000 0 33 0 3333 000 0 0 333 111111 0 6 0 999 7 00000000000000000 000000000 1 777 7 7 333333 7 1 0 000 3 6 8888888888888888888888888888 222 3 3 8888 3 3 66 0 3 77 99 7 8888888 5555 00 00 7777 77 00 6 11 00 00 3 2 00 22222 333 00 3 6 33 222 00 6 6 6 3 111 5555 8 6 99 6 000 2 33333 9 6 4 6
consensus : TCTCTC--TTATTTCAA-GCACTCCTTA--TG---T-GT-GTTA--GCACAA---AA-A-CGTCAGA-TTTGGTTTA--T-TTT--AAA-CA-T--TT--AA--TTTG-TAAT-AGAAAACTGTAAGAA--AAAAAAATAACGA-----------------AAAATATCAGATCAGATAAAAAT-AA-AATCATGAAA--TGA-CT-CACAACC--T-A-TGTCAAGAAAAATAA-AGA---TATGACT-A--AC---G--G-------ATG-----GTAAAT---ATGT-TGA-GCA--T-TA-A-ACAATAGACA-TTT-GC--AGAACTT-TT-------AACAAA-T--CA--GAC--TTC----TGT-ATAAA--CA-T-AA--TTTTT--C-TGGAATT--TACA-----TATGTC--TAAAAA--TA-CC-GG-TTTTTCGTCC-GC--CG-T-A-T-CGCG-ATACG--TATTGTGGGA-CGAAT-T-ATCAC--GATATACCGATATATCGA-TAAAACCTCAC-ATCCTT
Reference ( gi|2 ) : TCTCTCA-TTATCTCC--GTACTCCTTA--TG---T-GT-ATTA--ACCCTA---AA-A-CGTCAGA-TTTGGTTTA--C-TT---AAA-CA-T--CT--AA--TTTG-TATT-AGAAAACTGTAAGAA-GAAAAAAATAACGA-----------------AAAATATCAGATCAGATAAAAAT-AA-AATCATGAAA--TGA-CT-CACAACC--T-A-TGTCAGGAAAAATAA-AGA---TATGACT-A--AT---C--G-------ATG-----GCAAAT---ATGT-TGA-GCA--T-TA-A-ACAATAGGCA-TTT-GC--AAAACTT-TT-------AACAAA-T--CA--GAC--TTC----TGC-ATAAA--CA-T-GA--TTTTT--C-TGGAATT--TACA-----TATGTT--TAAAAA--TA-CC-GA-TTTTTCGTCC-GC--CG-T-A-T-CGTG-ATATA--TATTGTGGGA-CGAAT-T-ATCAC--GATATACCGATATATCGA-TAAAACCTCAC-ATCCTT
gi|3 : TCTCTCA-TTATTTCAAAGTACTCCTTA--TG---T-GT-ATTA--ACACTA---AA-A-CGTCAGA-TTTGGTCTA--C-TTTAAAAA-CA-T--TT--AA--TTTG-TATT-AGAAAACTGTAAGGA--AAAAAAAT-ATGA-----------------AAAATATCAGATCAGAAAAAAAT-CC-AATCATGAAA--TGATCT-CACAACC--T-ACTGTCAGG-AAAATAA-AGA---TATGACT-A--TG---C--GAAT----ATG-----T--AAT---ATGT-TGA-GCA----TA-A-AAAA-AGACT-TTT-CC----AACTT-TT-------AA-AAA-T--CA--GAC--TTC----TG--AT-AA--CA-T--ATTTTTTT--C-TGGAATT--T-TA-----TATG-T--TAAAAA--TC-AC-GA-TTTTTCGTCC-GC--CG-TAA-T-CGCG-ATAAACGTATTGTGGAA-CGAAT-T-ATCAC--GAT-------TATACCGA-TAAAACCTCAC-ATCCTT
gi|4 : TCTCTC--TAATTTCA--GCACTCCTTA--TG---T-GT-GTTT--TCACAA---AA-A-CGT-----------TTC--T-TT---AAA-CA-T--TTT-AA--TTTG-TATT-AGAAAACTGTAAGAA---AAAAAATAACAA-----------------AAAATATCAGATCAGATAAAAAT-CA-AATCATGAAC--AGA-CT-CACAACC--T-A-TGTCAAG-AAAATAA-AGG---TATGACT-A--ATATGCTGA-------ATG-----ATAAAT---ATGT-TGA-ACA--T-TA-A-GC-ATAGACATTTT-GCA-AAAACAT-TT-------AACAAATT--CA--GAC--TTC----TGT-ATAAA--CA-T-AA--TTTCT--G-TGAACTTAGTACA-----TATGTC--TAAAAA--TA-TT-GATTTTTTCGTC---C--CA-T-A-T-CACA-ATACA--TATTGT--GA-TG-AT-T-ATCAT--GATATACCGATATATCGA-TAAAACCTCAC-ATCCTT
gi|1 : TCTCTCAATTATTTTCA-GTACTCCTTAAGTG---T-GTGATTA--ACACCATAAAA-A-CAGCAGGGTTTGGTTTA--CATT---AAAACA-TTTCT--AA--TTTG-TATTTAGAAAACTGTAAGGA----AAAGATAACGA-----------------AAAATAT--GATCAGATAAAAAT-AACAATCTTGAAAACTGA-CTTCA-AACTCAT-A-TGTCAGGGAAAATAGGAGA---TATG-CT-T--AT---G--GGCAGAATATG-----TCAAATT--ATGT-TGA-GCAC-T-TATATACAATGGACA-TTTTGC--AAAACTG-T--------AACAAA-A--TAACGAT--TTT----TGT-ATAAAAGCA-TAGA--TTTTTGTCGTGGAATT--TACA-----TATGTTCGTAAAAAGATA-CC-GA-CTTTTCGTCCCGCATCG-T-AAT-CGCA-ATACG--TATTGTGGGACCGAATATAATCACAGGAAATA-----ATACCGA-TAATACCTCAC-ATCCTT
gi|14 : TCTCTC--TTATTTCA--GCACTCCTTA--TGATGT-GT-GTTA---CACAA---AAGA-AGTCAGA-TTTGGTTTAT-T-TT---AAA-CATT--TT--AAACTTTG-TAAT-AGAAAACTATAAGAA-AA
gi|13 : TCTCTC--TTATATTCA-GCACTCCTTA--TGATGT-GT-GTTA--GCACAA---AAGA-AGTCAGA-TTTGGTTTA--T-TTT--AAA-CA-T--TTTAAAC-TTTG-TAAT-AGAAAACTATAAGAA-AA
gi|15 : TCTCTC--TTATTTCA--GCACTCCTTA--TGATGT-GT-GTTA--GCACAA---AAGA-AGTCAG--TTTGGTTTA--T-TTT--AAA-CA-T--TTT-AAC-TTTG-TAAT-AGAAAACTATAAGAA-AA
gi|5 : --GCACTCCTTA--CG---T-GT-TTGC--AC---A---AA-A-TGTCAGA-TTTGGTTTA--T-TTT--AAA-CA-T--TT--AT--TTTG-TTAT-AGAAAACTGTAAGAA-GACAAATTTT-CGT-----------------AAAAT--CAAATCAGATAA---T-AA-------GAAA--TGA-CT-CGCAACC--TTA-TGTCAAGAAAAATAA-AAAA--TATTACT-ATGAC---G--A-------ATA-----GTAAAT---CTGT-TGAAGTA--C-TA-A-ATAACAAAAC-TTT-TC--AGAACAT-TT-------AACAAA-T--CA--TAC--TTCAAACTGT-ATAA---TA-T--A--CTTTT--T-GGGAAAT--TACA-----TATGTC--ATAAAA--TA-CC-GG-TTTTTCATCC-AA--CGGT-A-T-TGCG-ATACA--TATCATGGAA-TGAAT-T-ATCAC--GATGAACCGATATATCGA-TAAAAACTCACAATCCTT
gi|6 : TCCTTA--TG---T-GT-GTTATTACATAG---AA-A-TGCCAAA-TTT-ATTCATTT-TT---GAA-CATT--CT--AT--TTTGCTATT-AAAAAACT-TAATAATTAAAACAATAACAATTGAAATTAATTAAATTAAAATATCAGATCAGAT---ACT----AATCAAGGA-----A-CT-CACAACC----A-T------AAAAATAT-GAC---TATGACA-A--AT--------------AT------GTAAAT---CTGT-TGA-GTA--TATT-A-GCAATAAACA-TTT-TC--AGAACTT-TT-------AACAAA----CA--TAC--TTC----TAT-ATAAA--CA-T-AA--TTTTT--C-TGGAATT--TACA-----TATGTC--TAAAAA--TA-CTGGG-CTTTTTGTCT-GC--CG-T-A-T-C---------------GTGGGA-CAAAA-C-ATCAC--GATATACTGATATA-CGA-TA------TAC-ATCCTT
gi|7 : caA--TG---TTGT-GTTA--GCACAA---AA-AACATCAGA-TTTG-TTTA--T-TTT--AAA-CA-T--TT--A---TTTG-TAAT-AGAAAACTGTAAGAA---AACAAATAACGA-----------------AAAATAACAGATCAGATAA---TCAA-AATGATCGAC--TCA-AT-CACA--C--T-A-TGTCAAGAAC------------TATGGCG-A--AT--------------ATG------TAAAT---ATGT-TGA-GCA--T-TA-A-ACAATAGACA-TTT-GT--AAAACTT-TT-------AACAAA-T--CA--GACACTTC----TGT-ATAAA--AAAT-AA--TTTTT--C-TGGAATT--TACA-----T--GTC--TAAATA--TA-CA-GA-TTTTTCGTCC-AC--CG-T-A-T-CGCG-ATATG--TATTGTGGGA-CAAAT-T-ATCAT--G----------ATATCGA-TAAAACCTCAC-ATCC
gi|8 : ---AA-A-TGTCAGA-TTTGGTTTA--T-TTT--AAA-CA-T--TT--AA--TTTG-TAAT-AGAAAACTGTAAGAA---AACAATTAACGA-----------------AAAATATCAGATCAGATAACAAT-------CA---AA--TAA-CT-CACAACT--T---TGTCAAGAAAAATAA-AGA---TATGACT-A-------T--G-------ACGAATATGTAAAT---ATGT-TAA-GCA--T-TA-A-ACAATAGACA-GTT-GC--AAAACTT-TT-------AACAAA-T--CA--GAC--TTC----TGT-ATAAA--CA-T-AA--TTTTT--C-TGGAATT--TACA-----TATGTC--TAAAAA--TA-CC-GA-TTTTTCGTCC-GC--TG-T-A-T-CGCG-ATATG--TATTGTGGGA-CGAAT-A-ATCA----------CGATATATCGA-TAAAACATCAC-ATCCTT
gi|9 : caacAATAA-AAAAATTATGACT-G--AC---G--G-------ATAT----GTAAAT---CTGT-TGA-GTA--T-TA-A-ACA-TGAACA-TTT-CC--AGAACTT-TTAAGTTTTAACAAA-T--CA--GAC--TTC----TGT-ATAAG--CA-T-AA--TTTTT--C-TGCAATT--TACA-----TATGTC--TGAAAA--TA-CC-GG-TTTTTCATCA-AC--CG-T-A-T-CGCG-ATACG--TATCGTAGGA-CCAAT-T-ATCAC--GATATACTGATATATTGA-TAAAACATCAC-ATCCT
gi|11 : aaatgacgatgatttaccgaaatgacactataaattaccgaaaatctatctaaacctaccaaaactacactcA---TATG-CTGA--AT--------------ATG------TAAAT---ATGT-TGA-ACA--T-TA-A-GCAATAGACA-TTTTGC--AAAACAT-TT-------AACAAA-T--CA--GAC--TTC----TGT-ATAAA--CA-T-AA--TTTTT--CGTGAACTTAGTACA-----TATGTC--TAAAAA--TA-TT-GA-TTTTTCGTCC-GC--CA-T-A-T-CACA-ATACA--TATTGTGGGA-TGAAT-T-ATCAT--GATATACCGATATATCGA-TAAAACCTCAC-ATCCTT
gi|10 : acta---TATGACT-G--AC---G--G-------ATAT----GTATAC---ACATGTGA-GTGACT-TA-A-ACA-T-GAAA-TTT--C--AGAATTTATC-------AACAGA-TATCA--GAC--TTC----TGTTATAAA--CA-TTGA--ATTTT--C-TGGCAAT--TACATATAGTATGTC--TAAAAA--TACCC-GG---TTTCATC---C--CA-T-A-TACGCG-ATACG--TAT--CGGGA-AGAA--T-ATCA---GATATACTA--ATACCGATTAAAACGTCAC-ATCCT
gi|16 : ccaat---TATGACT-ATGAC---G--G-------ATAT----GTAAATCACATGT-TGA-GTA--T-TA-A-ACCCGAGAGA-TTT-ACATAAAACAT-TT-------A
gi|12 : agaaaggtggaaagacctaatAC---ATGT--GA-ACT--A-TA-A-ACAA---ACA-TTT--C--AGAATTTATC-------AACATA-T--CA---AC--TTC----TGT-ATAAA--CA---GA--ATTTT--C-TGCAA-G--TACATAAAGTATGTC--T-GAAA--TACCC-GG---TTTCATC---C--CA-T-A-TACGCGAATACG--TAT--CGGGA-AGAA--T-ATCA---GATATACTGA---AACGA-TAAAACGTCAC-ATCC
Alignments
lowQualScore : 11 33 222 1111 1 111 33333333333333333 11111 11111 111111 33333333333333333333333 11 1111111 111 111
lowQualScore : 99 5 11 55 111 4 4 999 666 3 1111 3 1 88 3 4 3 55 333 3 2 3 88 99 0 55555555555555555 9 66666 3 777 5 5 44444 0 2 99 4 666666 55555555555555555555555 3 888 3 3 8888 3 3 11 3 22 77 0 6 0000000 5555 44 44 7777 3 44 3 44 6 7777 99 88888 88888 44 44 6 3 55 222 44 3 3 6 3 44 3 3 44 3 111 0 22 22 1 3 0 3
lowQualScore : .. . .. .. ... . . ... ... . .... . . .. . . . .. ... . . . .. .. . ................. . ..... . ... . . ..... . . .. . ...... ....................... . ... . . .... . . .. . .. .. . . ....... .... .. .. .... . .. . .. . .... .. ..... ..... .. .. . . .. ... .. . . . . .. . . .. . ... . .. .. . . . .
lowQualScore : 33 7 00 55 000 0 0 444 444 6 2222 6 4 66 6 5 6 00 888 6 8 6 66 99 4 00000000000000000 2 44444 4 222 0 0 11111 1 4 55 0 888888 44444444444444444444444 1 555 1 1 3333 1 1 99 1 88 33 5 2 0000000 2222 66 66 1111 3 66 3 66 7 5555 22 33333 33333 66 66 7 3 00 888 66 3 3 7 3 66 7 3 77 3 111 3 00 22 0 3 4 3
consensus : TCTCTCA-TTAT-TTCA--GCACTCCTTA--TG---T-GTG-TTA--GCAC---AA-AA-A-CGTCAGA-TTTGGTTTATTTT--AAA-CA-TT-T--AA--TTTG-TANT-AGAAAACTGTAAGAA--AAAAAAATAACGA-----------------AAAATATCAGATCAGATAAAAAT-AA-AATCATGAAA--TGA-CT-CACAACC--TA-TGTCAAGAAAAAT--AA-AGA------TATGACTAT-A-----CGG-------A-TATGTAA-AT---ATGT-TG-AGCA--T-TA-A-ACAATAGACA-TTT-GC--AAAACTT-TT-------AACAAA-T--CA--GAC--TT----CTGT-ATAAA--CA-T--A-ATTTTT--C-TGGAATT--TACA-----TAT-----GTC--TAAAAA--TA-CC-GA-TTTTTCGTCC-GC--CGT-A-T-CGCG-AT--ACGTATTGTGGGA-CGAAT-T-ATCAC--GATATACCGATATATCGA-TAAAACCTCAC-ATCCTT
Reference ( family-993 ) : TCTCTC--TTAT-TTCAA-GCACTCCTTA--TG---T-GTG-TTA--GCAC---AA-AA-A-CGTCAGA-TTTGGTTTATTTT--AAA-CA-TT-T--AA--TTTG-TAAT-AGAAAACTGTAAGAA--AAAAAAATAACGA-----------------AAAATATCAGATCAGATAAAAAT-AA-AATCATGAAA--TGA-CT-CACAACC--TA-TGTCAAGAAAAAT--AA-AGA------TATGACTA--A-----CGG-------A-TG-GTAA-AT---ATGT-TG-AGCA--T-TA-A-ACAATAGACA-TTT-GC--AGAACTT-TT-------AACAAA-T--CA--GAC--TT----CTGT-ATAAA--CA-T--A-ATTTTT--C-TGGAATT--TACA-----TAT-----GTC--TAAAAA--TA-CC-GG-TTTTTCGTCC-GC--CGT-A-T-CGCG-AT--ACGTATTGTGGGA-CGAAT-T-ATCAC--GATATACCGATATATCGA-TAAAACCTCAC-ATCCTT
gi|1 : TCTCTCAATTAT-TTTCA-GTACTCCTTAAGTG---T-GTGATTA--ACACCATAA-AA-A-CAGCAGGGTTTGGTTTACATT--AAAACA-TT-TCTAA--TTTG-TATTTAGAAAACTGTAAGGA--AAAGA--TAACGA-----------------AAAATAT--GATCAGATAAAAAT-AACAATCTTGAAAACTGA-CTTCA-AACTCATA-TGTCAGGGAAAAT--AGGAGA------TATG-CTT--A-----TGGGCAGAATA-TG-TCAA-ATT--ATGT-TG-AGCAC-T-TATATACAATGGACA-TTTTGC--AAAACTG-T--------AACAAA-A--TAACGAT--TT----TTGT-ATAAAAGCA-T--AGATTTTTGTCGTGGAATT--TACA-----TAT-----GTTCGTAAAAAGATA-CC-GA-CTTTTCGTCCCGCATCGT-AAT-CGCA-AT--ACGTATTGTGGGACCGAATATAATCACAGGAAATA-----ATACCGA-TAATACCTCAC-ATCCTT
gi|10 : ------TATGACTG--A-----CGG-------A-TATGTAT-AC---ACATGTG-AGTGACT-TA-A-ACA-T-GAAA-TTT--C--AGAATTTATC-------AACAGA-TATCA--GAC--TT----CTGTTATAAA--CA-TTGA-ATTTT---C-TGGCAAT--TACA-----TATAGTATGTC--TAAAAA--TACCC-GG---TTTCATC---C--CAT-A-TACGCG-AT--ACGTAT--CGGGA-AGAA--T-ATCA---GATATACTA--ATACCGATTAAAACGTCAC-ATCCT
gi|11 : ccaat-GTAA-AT---ATGT-TG-AACA--T-TA-A-GCAATAGACA-TTTTGC--AAAACAT-TT-------AACAAA-T--CA--GAC--TT----CTGT-ATAAA--CA-T--A-ATTTTT--CGTGAACTTAGTACA-----TAT-----GTC--TAAAAA--TA-TT-GA-TTTTTCGTCC-GC--CAT-A-T-CACA-AT--ACATATTGTGGGA-TGAAT-T-ATCAT--GATATACCGATATATCGA-TAAAACCTCAC-ATCCTT
gi|12 : actaatatgctgaatatACTAG-A-----CGG-------AAT---TAACAC---ATGT--G-AACT--A-TA-A-ACAA---ACA-TTT--C--AGAATTTATC-------AACATA-T--CA---AC--TT----CTGT-ATAAA--CA-G--A-A-TTTT--C-TGCAA-G--TACATAAAGTAT-----GTC--T-GAAA--TACCC-GG---TTTCATC---C--CAT-A-TACGCGAAT--ACGTAT--CGGGA-AGAA--T-ATCA---GATATACTGA---AACGA-TAAAACGTCAC-ATCC
gi|13 : ttaatTCTCTC--TTATATTCA--GCACTCCTTA--TGATGT-GTG-TTA--GCAC---AA-AAGA-AGTCAGA-TTTGGTTTATTTT--AAA-CATTT-T--AAACTTTG-TAAT-AGAAAACTATAAGAA--AA
gi|14 : TCTCTC--TTAT-TTCA--GCACTCCTTA--TGATGT-GTG-TTA---CAC---AA-AAGA-AGTCAGA-TTTGGTTTATTTT--AAA-CATTT-T--AAACTTTG-TAAT-AGAAAACTATAAGAA--AA
gi|15 : TCTCTC--TTAT-TTCA--GCACTCCTTA--TGATGT-GTG-TTA--GCAC---AA-AAGA-AGTCAG--TTTGGTTTATTTT--AAA-CATTT-T--AAC-TTTG-TAAT-AGAAAACTATAAGAA--AA
gi|16 : AGAAAGGTGGAA-AGACCTAATTATGACTATGA-----CGG-------A-TATGTAA-ATCACATGT-TG-AGTA--T-TA-A-ACCCGAGAGA-TTT-ACATAAAACAT-TT-------A
gi|2 : TCTCTCA-TTAT-CTCC--GTACTCCTTA--TG---T-GTA-TTA--ACCC---TA-AA-A-CGTCAGA-TTTGGTTTA-CTT--AAA-CA-TC-T--AA--TTTG-TATT-AGAAAACTGTAAGAAG-AAAAAAATAACGA-----------------AAAATATCAGATCAGATAAAAAT-AA-AATCATGAAA--TGA-CT-CACAACC--TA-TGTCAGGAAAAAT--AA-AGA------TATGACTA--A-----TCG-------A-TG-GCAA-AT---ATGT-TG-AGCA--T-TA-A-ACAATAGGCA-TTT-GC--AAAACTT-TT-------AACAAA-T--CA--GAC--TT----CTGC-ATAAA--CA-T--G-ATTTTT--C-TGGAATT--TACA-----TAT-----GTT--TAAAAA--TA-CC-GA-TTTTTCGTCC-GC--CGT-A-T-CGTG-AT--ATATATTGTGGGA-CGAAT-T-ATCAC--GATATACCGATATATCGA-TAAAACCTCAC-ATCCTT
gi|3 : TCTCTCA-TTAT-TTCAAAGTACTCCTTA--TG---T-GTA-TTA--ACAC---TA-AA-A-CGTCAGA-TTTGGTCTACTTTAAAAA-CA-TT-T--AA--TTTG-TATT-AGAAAACTGTAAGGA--AAAAAAAT-ATGA-----------------AAAATATCAGATCAGAAAAAAAT-CC-AATCATGAAA--TGATCT-CACAACC--TACTGTC-AGGAAAAT--AA-AGA------TATGACTAT-G-----CGA-------A-TATGT-A-AT---ATGT-TG-AGCA----TA-A-AAAA-AGACT-TTT-CC----AACTT-TT-------AA-AAA-T--CA--GAC--TT----CTG--AT-AA--CA-T--ATTTTTTT--C-TGGAATT--T-TA-----TAT-----GT---TAAAAA--TC-AC-GA-TTTTTCGTCC-GC--CGTAA-T-CGCG-ATAAACGTATTGTGGAA-CGAAT-T-ATCAC--GAT-------TATACCGA-TAAAACCTCAC-ATCCTT
gi|4 : TCTCTC--TAAT-TTCA--GCACTCCTTA--TG---T-GTG-TTT--TCAC---AA-AA-A-CGT-----------TT-CTTT--AAA-CATTT-T--AA--TTTG-TATT-AGAAAACTGTAAG-A--AAAAAAATAACAA-----------------AAAATATCAGATCAGATAAAAAT-CA-AATCATGAAC--AGA-CT-CACAACC--TA-TGTCAAG-AAAAT--AA-AGG------TATGACTA--ATATGCTGA-------A-TG-ATAA-AT---ATGT-TG-AACA--T-TA-A-GC-ATAGACATTTT-GCA-AAAACAT-TT-------AACAAATT--CA--GAC--TT----CTGT-ATAAA--CA-T--A-ATTTCT--G-TGAACTTAGTACA-----TAT-----GTC--TAAAAA--TA-TT-GATTTTTTCGTC---C--CAT-A-T-CACA-AT--ACATATTGT--GA-TG-AT-T-ATCAT--GATATACCGATATATCGA-TAAAACCTCAC-ATCCTT
gi|5 : -GCACTCCTTA--CG---T-GT--TT---GCAC---AA-AA---TGTCAGA-TTTGGTTTATTTT--AAA-CA-TT-T--AT--TTTG-TTAT-AGAAAACTGTAAGAA--GACAAATTTTCGT-----------------AAA--ATCAAATCAGAT---AAT-AA-------GAAA--TGA-CT-CGCAACCT-TA-TGTCAAGAAAAATA-AA-AAA------TATTACTATGA-----CGA-------A-TA-GTAA-AT---CTGT-TGAAGTA--C-TA-A-ATAACAAAAC-TTT-TC--AGAACAT-TT-------AACAAA-T--CA--TAC--TTCAAACTGT-AT-AA--TA-T--A-CTTTTT----GGGAAAT--TACA-----TAT-----GTC--ATAAAA--TA-CC-GG-TTTTTCATCCAAC--GGT-A-T-TGCG-AT--ACATATCATGGAA-TGAAT-T-ATCAC--GATGAACCGATATATCGA-TAAAAACTCACAATCCTT
gi|6 : TCCTTA--TG---T-GTG-TTATTACAT---AG-AA-A-TGCCAAA-TTTA-TTCATTTTT-GAA-CA-TTCT--AT--TTTGCTATT-AAAAAACT-TAATAATTAAAACAATAACAATTGAAATTAATTAAATTAAAATATCAGATCAGATAC---T-AA---TCAAGGAA------CT-CACAACC----------------AT--AA-AAA------TATGACTATGA-----CAA-------A-TATGTAA-AT---CTGT-TG-AGTA--TATT-A-GCAATAAACA-TTT-TC--AGAACTT-TT-------AACAAA----CA--TAC--TT----CTAT-ATAAA--CA-T--A-ATTTTT--C-TGGAATT--TACA-----TAT-----GTC--TAAAAA--TA-CTGGG-CTTTTTGTCT-GC--CGT-A-T-C---------------GTGGGA-CAAAA-C-ATCAC--GATATACTGATATA-CGA-TA------TAC-ATCCTT
gi|7 : caA--TG---TTGTG-TTA--GCAC---AA-AA-AACATCAGA-TTTG-TTTATTTT--AAA-CA-TT-T--A---TTTG-TAAT-AGAAAACTGTAAGAA--AACAAA-TAACGA-----------------AAAATAACAGATCAGATAA---TCAA-AATGATCGAC--TCA-AT-CACA--C--TA-TGTCAAGAAC-----------------TATGGCGA--A-----T---------A-TG--TAA-AT---ATGT-TG-AGCA--T-TA-A-ACAATAGACA-TTT-GT--AAAACTT-TT-------AACAAA-T--CA--GACACTT----CTGT-ATAAA--AAAT--A-ATTTTT--C-TGGAATT--TACA-----T-------GTC--TAAATA--TA-CA-GA-TTTTTCGTCC-AC--CGT-A-T-CGCG-AT--ATGTATTGTGGGA-CAAAT-T-ATCAT--G----------ATATCGA-TAAAACCTCAC-ATCC
gi|8 : C---AACAA-A-TGTCAGA-TTTGGTTTATTTT--AAA-CA-TT-T--AA--TTTG-TAAT-AGAAAACTGTAAGAA--AACAAT-TAACGA-----------------AAAATATCAGATCAGATAACAAT-------CA---AA--TAA-CT-CACAACT--T--TGTCAAGAAAAAT--AA-AGA------TATGACTATGA-----CGA-------A-TATGTAA-AT---ATGT-TA-AGCA--T-TA-A-ACAATAGACA-GTT-GC--AAAACTT-TT-------AACAAA-T--CA--GAC--TT----CTGT-ATAAA--CA-T--A-ATTTTT--C-TGGAATT--TACA-----TAT-----GTC--TAAAAA--TA-CC-GA-TTTTTCGTCC-GC--TGT-A-T-CGCG-AT--ATGTATTGTGGGA-CGAAT-A-ATCA----------CGATATATCGA-TAAAACATCAC-ATCCTT
gi|9 : AAT--AA-AAAAAT---TATGACTG--A-----CGG-------A-TATGTAA-AT---CTGT-TG-AGTA--T-TA-A-ACA-TGAACA-TTT-CC--AGAACTT-TTAAGTTTTAACAAA-T--CA--GAC--TT----CTGT-ATAAG--CA-T--A-ATTTTT--C-TGCAATT--TACA-----TAT-----GTC--TGAAAA--TA-CC-GG-TTTTTCATCA-AC--CGT-A-T-CGCG-AT--ACGTATCGTAGGA-CCAAT-T-ATCAC--GATATACTGATATATTGA-TAAAACATCAC-ATCCT
Alignments
lowQualScore : 22 222 1111 1 111 33333333333333333 11111 11111 111111 11111 11 1111111 111 111
lowQualScore : 44 5 5 66 55 111 4 4 999 666 3 1111 3 1 3 88 4 3 55 333 3 1 3 88 99 0 55555555555555555 9 66666 3 777 5 5 44444 0 2 99 4 666666 3 99999 3 44 3 3 3 3 888 3 3 8888 3 3 11 3 22 77 6 0000000 5555 77777 7777 3 3 44 44 6 7777 99 88888 88888 44 44 6 3 55 222 44 3 3 6 3 44 3 3 44 3 111 0 22 22 1 3 0 3
lowQualScore : .. . . .. .. ... . . ... ... . .... . . . .. . . .. ... . . . .. .. . ................. . ..... . ... . . ..... . . .. . ...... . ..... . .. . . . . ... . . .... . . .. . .. .. . ....... .... ..... .... . . .. .. . .... .. ..... ..... .. .. . . .. ... .. . . . . .. . . .. . ... . .. .. . . . .
lowQualScore : 77 7 7 99 55 000 0 0 444 444 6 2222 6 4 6 66 5 6 00 888 6 0 6 66 99 4 00000000000000000 2 44444 4 222 0 0 11111 1 4 55 0 888888 1 44444 1 22 1 1 1 1 555 1 1 3333 1 1 99 1 88 33 2 0000000 2222 55555 1111 3 3 66 66 7 5555 22 33333 33333 66 66 7 3 00 888 66 3 3 7 3 66 7 3 77 3 111 3 00 22 0 3 4 3
consensus : TCTCTCA-TTAT-TT-CA--GCACTCCTTA--TG---T-GTG-TTA--GCAC---AA-AA-A-CGTCAGA-TTTGGTTTATTTT-AAA--CA-TT-T--AA--TTTG-TANT-AGAAAACTGTAAGAA--AAAAAAATAACGA-----------------AAAATATCAGATCAGATAAAAAT-AA-AATCATGAAA--TGA-CT-CACAACC--TA-TGTCAAGAAAAAT--AA-AGA------TATGACT-AT-A--C-G--GA-TATG-T-AA-AT---ATGT-TG-AGCA--T-TA-A-ACAATAGACA-TTT-GC--AAAACTT-TT-------AACAAA-T--CA--G--ACTT----CTGT-AT-AAA--CAT--A-ATTTTT--C-TGGAATT--TACA-----TAT-----GTC--TAAAAA--TA-CC-GA-TTTTTCGTCC-GC--CGT-A-T-CGCG-AT--ACGTATTGTGGGA-CGAAT-T-ATCAC--GATATACCGATATATCGA-TAAAACCTCAC-ATCCTT
Reference ( family-993 ) : TCTCTCA-TTAT-TT-CA--GCACTCCTTA--TG---T-GTG-TTA--GCAC---AA-AA-A-CGTCAGA-TTTGGTTTATTTT-AAA--CA-TT-T--AA--TTTG-TANT-AGAAAACTGTAAGAA--AAAAAAATAACGA-----------------AAAATATCAGATCAGATAAAAAT-AA-AATCATGAAA--TGA-CT-CACAACC--TA-TGTCAAGAAAAAT--AA-AGA------TATGACT-AT-A--C-G--GA-TATG-T-AA-AT---ATGT-TG-AGCA--T-TA-A-ACAATAGACA-TTT-GC--AAAACTT-TT-------AACAAA-T--CA--G--ACTT----CTGT-AT-AAA--CAT--A-ATTTTT--C-TGGAATT--TACA-----TAT-----GTC--TAAAAA--TA-CC-GA-TTTTTCGTCC-GC--CGT-A-T-CGCG-AT--ACGTATTGTGGGA-CGAAT-T-ATCAC--GATATACCGATATATCGA-TAAAACCTCAC-ATCCTT
gi|1 : TCTCTCAATTAT-TTTCA--GTACTCCTTAAGTG---T-GTGATTA--ACACCATAA-AA-A-CAGCAGGGTTTGGTTTACATT-AAAA-CA-TT-TCTAA--TTTG-TATTTAGAAAACTGTAAGGA--AAAGA--TAACGA-----------------AAAATAT--GATCAGATAAAAAT-AACAATCTTGAAAACTGA-CTTCA-AACTCATA-TGTCAGGGAAAAT--AGGAGA------TATGCTT-AT-GGGC-A--GAATATG-TCAA-ATT--ATGT-TG-AGCAC-T-TATATACAATGGACA-TTTTGC--AAAACTG-T--------AACAAA-A--TAACG--ATTT----TTGT-AT-AAAAGCAT--AGATTTTTGTCGTGGAATT--TACA-----TAT-----GTTCGTAAAAAGATA-CC-GA-CTTTTCGTCCCGCATCGT-AAT-CGCA-AT--ACGTATTGTGGGACCGAATATAATCACAGGAAATA-----ATACCGA-TAATACCTCAC-ATCCTT
gi|10 : ------TATGACT-G--A--C-G--GA-TATG-T-AT-AC---ACATGTG-AGTGACT-TA-A-ACA-T-GAAA-TTT--C--AGAATTTATC-------AACAGA-TATCA--G--ACTT----CTGTTAT-AAA--CATTGA-ATTTT---C-TGGCAAT--TACA-----TATAGTATGTC--TAAAAA--TACCC-GG---TTTCATC---C--CAT-A-TACGCG-AT--ACGTAT--CGGGA-AGAA--T-ATCA---GATATACTA--ATACCGATTAAAACGTCAC-ATCCT
gi|11 : ccaatT-AT-G--CTG--AA-TATG-T-AA-AT---ATGT-TG-AACA--T-TA-A-GCAATAGACA-TTTTGC--AAAACAT-TT-------AACAAA-T--CA--G--ACTT----CTGT-AT-AAA--CAT--A-ATTTTT--CGTGAACTTAGTACA-----TAT-----GTC--TAAAAA--TA-TT-GA-TTTTTCGTCC-GC--CAT-A-T-CACA-AT--ACATATTGTGGGA-TGAAT-T-ATCAT--GATATACCGATATATCGA-TAAAACCTCAC-ATCCTT
gi|12 : actaaACT-AG-A--C-G--GA--AT--T-AACAC---ATGT--G-AACT--A-TA-A-ACAA---ACA-TTT--C--AGAATTTATC-------AACATA-T--CA-----ACTT----CTGT-AT-AAA--CAG--A-A-TTTT--C-TGCAA-G--TACATAAAGTAT-----GTC--T-GAAA--TACCC-GG---TTTCATC---C--CAT-A-TACGCGAAT--ACGTAT--CGGGA-AGAA--T-ATCA---GATATACTGA---AACGA-TAAAACGTCAC-ATCC
gi|13 : ttaatTCTCTC--TTATATT-CA--GCACTCCTTA--TGATGT-GTG-TTA--GCAC---AA-AAGA-AGTCAGA-TTTGGTTTATTTT-AAA--CATTT-T--AAACTTTG-TAAT-AGAAAACTATAAGAA--AA
gi|14 : TCTCTC--TTAT-TT-CA--GCACTCCTTA--TGATGT-GTG-TTA---CAC---AA-AAGA-AGTCAGA-TTTGGTTTATTTT-AAA--CATTT-T--AAACTTTG-TAAT-AGAAAACTATAAGAA--AA
gi|15 : TCTCTC--TTAT-TT-CA--GCACTCCTTA--TGATGT-GTG-TTA--GCAC---AA-AAGA-AGTCAG--TTTGGTTTATTTT-AAA--CATTT-T--AAC-TTTG-TAAT-AGAAAACTATAAGAA--AA
gi|16 : AGAAAGGTGGAA-AGACCTAATTATGACT-ATGA--C-G--GA-TATG-T-AA-ATCACATGT-TG-AGTA--T-TA-A-ACCCGAGAGA-TTT-ACATAAAACAT-TT-------A
gi|2 : TCTCTCA-TTAT-CT-CC--GTACTCCTTA--TG---T-GTA-TTA--ACCC---TA-AA-A-CGTCAGA-TTTGGTTTACTT--AAA--CA-TC-T--AA--TTTG-TATT-AGAAAACTGTAAGAAG-AAAAAAATAACGA-----------------AAAATATCAGATCAGATAAAAAT-AA-AATCATGAAA--TGA-CT-CACAACC--TA-TGTCAGGAAAAAT--AA-AGA------TATGACT-A--A--T-C--GA-TG-G-C-AA-AT---ATGT-TG-AGCA--T-TA-A-ACAATAGGCA-TTT-GC--AAAACTT-TT-------AACAAA-T--CA--G--ACTT----CTGC-AT-AAA--CAT--G-ATTTTT--C-TGGAATT--TACA-----TAT-----GTT--TAAAAA--TA-CC-GA-TTTTTCGTCC-GC--CGT-A-T-CGTG-AT--ATATATTGTGGGA-CGAAT-T-ATCAC--GATATACCGATATATCGA-TAAAACCTCAC-ATCCTT
gi|3 : TCTCTCA-TTAT-TT-CAAAGTACTCCTTA--TG---T-GTA-TTA--ACAC---TA-AA-A-CGTCAGA-TTTGGTCTACTTT-AAAAACA-TT-T--AA--TTTG-TATT-AGAAAACTGTAAGGA--AAAAAAAT-ATGA-----------------AAAATATCAGATCAGAAAAAAAT-CC-AATCATGAAA--TGATCT-CACAACC--TACTGTC-AGGAAAAT--AA-AGA------TATGACT-AT-G--C-G--AA-TATG-T--A-AT---ATGT-TG-AGCA----TA-A-AAAA-AGACT-TTT-CC----AACTT-TT-------AA-AAA-T--CA--G--ACTT----CTG--AT--AA--CAT--ATTTTTTT--C-TGGAATT--T-TA-----TAT-----GT---TAAAAA--TC-AC-GA-TTTTTCGTCC-GC--CGTAA-T-CGCG-ATAAACGTATTGTGGAA-CGAAT-T-ATCAC--GAT-------TATACCGA-TAAAACCTCAC-ATCCTT
gi|4 : TCTCTC--TAAT-TT-CA--GCACTCCTTA--TG---T-GTG-TTT--TCAC---AA-AA-A-CGT-----------TT-CTTT-AAA--CATTT-T--AA--TTTG-TATT-AGAAAACTGTAAG-A--AAAAAAATAACAA-----------------AAAATATCAGATCAGATAAAAAT-CA-AATCATGAAC--AGA-CT-CACAACC--TA-TGTCAAG-AAAAT--AA-AGG------TATGACTAAT-A--T-GCTGA--ATGAT-AA-AT---ATGT-TG-AACA--T-TA-A-GC-ATAGACATTTT-GCA-AAAACAT-TT-------AACAAATT--CA--G--ACTT----CTGT-AT-AAA--CAT--A-ATTTCT--G-TGAACTTAGTACA-----TAT-----GTC--TAAAAA--TA-TT-GATTTTTTCGTC---C--CAT-A-T-CACA-AT--ACATATTGT--GA-TG-AT-T-ATCAT--GATATACCGATATATCGA-TAAAACCTCAC-ATCCTT
gi|5 : --GCACTCCTTA--CG---T-GT--TT---GCAC---AA-AA---TGTCAGA-TTTGGTTTATTTT-AAA--CA-TT-T--AT--TTTG-TTAT-AGAAAACTGTAAGAA--GACAAATTTTCGT-----------------AAA--ATCAAATCAGAT---AAT-AA-------GAAA--TGA-CT-CGCAACCT-TA-TGTCAAGAAAAATA-AA-AAA------TATTACT-ATGA--C-G--AA-TA-G-T-AA-AT---CTGT-TGAAGTA--C-TA-A-ATAACAAAAC-TTT-TC--AGAACAT-TT-------AACAAA-T--CA--T--ACTTCAAACTGT-AT--AA--TAT--A-CTTTTT----GGGAAAT--TACA-----TAT-----GTC--ATAAAA--TA-CC-GG-TTTTTCATCCAAC--GGT-A-T-TGCG-AT--ACATATCATGGAA-TGAAT-T-ATCAC--GATGAACCGATATATCGA-TAAAAACTCACAATCCTT
gi|6 : TCCTTA--TG---T-GTG-TTATTACAT---AG-AA-A-TGCCAAA-TTTA-TTCATTTTTGAA--CA-TTCT--AT--TTTGCTATT-AAAAAACT-TAATAATTAAAACAATAACAATTGAAATTAATTAAATTAAAATATCAGATCAGATAC---T-AA---TCAAGGAA------CT-CACAACC----------------AT--AA-AAA------TATGACT-ATGA--C-A--AA-TATG-T-AA-AT---CTGT-TG-AGTA--TATT-A-GCAATAAACA-TTT-TC--AGAACTT-TT-------AACAAA----CA--T--ACTT----CTAT-AT-AAA--CAT--A-ATTTTT--C-TGGAATT--TACA-----TAT-----GTC--TAAAAA--TA-CTGGG-CTTTTTGTCT-GC--CGT-A-T-C---------------GTGGGA-CAAAA-C-ATCAC--GATATACTGATATA-CGA-TA------TAC-ATCCTT
gi|7 : caA--TG---TTGTG-TTA--GCAC---AA-AA-AACATCAGA-TTTG-TTTATTTT-AAA--CA-TT-T--A---TTTG-TAAT-AGAAAACTGTAAGAA--AACAAA-TAACGA-----------------AAAATAACAGATCAGATAA---TCAA-AATGATCGAC--TCA-AT-CACA--C--TA-TGTCAAGAA-----------------------CT-AT-GG-C-G--AA-TATG-T-AA-AT---ATGT-TG-AGCA--T-TA-A-ACAATAGACA-TTT-GT--AAAACTT-TT-------AACAAA-T--CA--GACACTT----CTGT-ATAAAA--AAT--A-ATTTTT--C-TGGAATT--TAC-------AT-----GTC--TAAATA--TA-CA-GA-TTTTTCGTCC-AC--CGT-A-T-CGCG-AT--ATGTATTGTGGGA-CAAAT-T-ATCAT--G----------ATATCGA-TAAAACCTCAC-ATCC
gi|8 : C---AACAA-A-TGTCAGA-TTTGGTTTATTTT-AAA--CA-TT-T--AA--TTTG-TAAT-AGAAAACTGTAAGAA--AACAAT-TAACGA-----------------AAAATATCAGATCAGATAACAAT-------CA---AA--TAA-CT-CACAACT--T--TGTCAAGAAAAAT--AA-AGA------TATGACT-ATGA--C-G--AA-TATG-T-AA-AT---ATGT-TA-AGCA--T-TA-A-ACAATAGACA-GTT-GC--AAAACTT-TT-------AACAAA-T--CA--G--ACTT----CTGT-AT-AAA--CAT--A-ATTTTT--C-TGGAATT--TACA-----TAT-----GTC--TAAAAA--TA-CC-GA-TTTTTCGTCC-GC--TGT-A-T-CGCG-AT--ATGTATTGTGGGA-CGAAT-A-ATCA----------CGATATATCGA-TAAAACATCAC-ATCCTT
gi|9 : AAT--AA-AAAAAT---TATGACT-G--A--C-G--GA-TATG-T-AA-AT---CTGT-TG-AGTA--T-TA-A-ACA-TGAACA-TTT-CC--AGAACTT-TTAAGTTTTAACAAA-T--CA--G--ACTT----CTGT-AT-AAG--CAT--A-ATTTTT--C-TGCAATT--TACA-----TAT-----GTC--TGAAAA--TA-CC-GG-TTTTTCATCA-AC--CGT-A-T-CGCG-AT--ACGTATCGTAGGA-CCAAT-T-ATCAC--GATATACTGATATATTGA-TAAAACATCAC-ATCCT
Alignments
lowQualScore : 22 222 1111 1 111 33333333333333333 11111 11111 111111 11111 11 1111111 111 111
lowQualScore : 44 5 5 66 55 111 4 4 999 666 3 1111 3 1 3 88 4 3 55 333 3 1 3 88 99 0 55555555555555555 9 66666 3 777 5 5 44444 0 2 99 4 666666 3 99999 3 44 3 3 3 3 888 3 3 8888 3 3 11 3 22 77 6 0000000 5555 77777 7777 3 3 44 44 6 7777 99 88888 88888 44 44 6 3 55 222 44 3 3 6 3 44 3 3 44 3 111 0 22 22 1 3 0 3
lowQualScore : .. . . .. .. ... . . ... ... . .... . . . .. . . .. ... . . . .. .. . ................. . ..... . ... . . ..... . . .. . ...... . ..... . .. . . . . ... . . .... . . .. . .. .. . ....... .... ..... .... . . .. .. . .... .. ..... ..... .. .. . . .. ... .. . . . . .. . . .. . ... . .. .. . . . .
lowQualScore : 77 7 7 99 55 000 0 0 444 444 6 2222 6 4 6 66 5 6 00 888 6 0 6 66 99 4 00000000000000000 2 44444 4 222 0 0 11111 1 4 55 0 888888 1 44444 1 22 1 1 1 1 555 1 1 3333 1 1 99 1 88 33 2 0000000 2222 55555 1111 3 3 66 66 7 5555 22 33333 33333 66 66 7 3 00 888 66 3 3 7 3 66 7 3 77 3 111 3 00 22 0 3 4 3
consensus : TCTCTCA-TTAT-TT-CA--GCACTCCTTA--TG---T-GTG-TTA--GCAC---AA-AA-A-CGTCAGA-TTTGGTTTATTTT-AAA--CA-TT-T--AA--TTTG-TANT-AGAAAACTGTAAGAA--AAAAAAATAACGA-----------------AAAATATCAGATCAGATAAAAAT-AA-AATCATGAAA--TGA-CT-CACAACC--TA-TGTCAAGAAAAAT--AA-AGA------TATGACT-AT-A--C-G--GA-TATG-T-AA-AT---ATGT-TG-AGCA--T-TA-A-ACAATAGACA-TTT-GC--AAAACTT-TT-------AACAAA-T--CA--G--ACTT----CTGT-AT-AAA--CAT--A-ATTTTT--C-TGGAATT--TACA-----TAT-----GTC--TAAAAA--TA-CC-GA-TTTTTCGTCC-GC--CGT-A-T-CGCG-AT--ACGTATTGTGGGA-CGAAT-T-ATCAC--GATATACCGATATATCGA-TAAAACCTCAC-ATCCTT
Reference ( family-993 ) : TCTCTCA-TTAT-TT-CA--GCACTCCTTA--TG---T-GTG-TTA--GCAC---AA-AA-A-CGTCAGA-TTTGGTTTATTTT-AAA--CA-TT-T--AA--TTTG-TANT-AGAAAACTGTAAGAA--AAAAAAATAACGA-----------------AAAATATCAGATCAGATAAAAAT-AA-AATCATGAAA--TGA-CT-CACAACC--TA-TGTCAAGAAAAAT--AA-AGA------TATGACT-AT-A--C-G--GA-TATG-T-AA-AT---ATGT-TG-AGCA--T-TA-A-ACAATAGACA-TTT-GC--AAAACTT-TT-------AACAAA-T--CA--G--ACTT----CTGT-AT-AAA--CAT--A-ATTTTT--C-TGGAATT--TACA-----TAT-----GTC--TAAAAA--TA-CC-GA-TTTTTCGTCC-GC--CGT-A-T-CGCG-AT--ACGTATTGTGGGA-CGAAT-T-ATCAC--GATATACCGATATATCGA-TAAAACCTCAC-ATCCTT
gi|1 : TCTCTCAATTAT-TTTCA--GTACTCCTTAAGTG---T-GTGATTA--ACACCATAA-AA-A-CAGCAGGGTTTGGTTTACATT-AAAA-CA-TT-TCTAA--TTTG-TATTTAGAAAACTGTAAGGA--AAAGA--TAACGA-----------------AAAATAT--GATCAGATAAAAAT-AACAATCTTGAAAACTGA-CTTCA-AACTCATA-TGTCAGGGAAAAT--AGGAGA------TATGCTT-AT-GGGC-A--GAATATG-TCAA-ATT--ATGT-TG-AGCAC-T-TATATACAATGGACA-TTTTGC--AAAACTG-T--------AACAAA-A--TAACG--ATTT----TTGT-AT-AAAAGCAT--AGATTTTTGTCGTGGAATT--TACA-----TAT-----GTTCGTAAAAAGATA-CC-GA-CTTTTCGTCCCGCATCGT-AAT-CGCA-AT--ACGTATTGTGGGACCGAATATAATCACAGGAAATA-----ATACCGA-TAATACCTCAC-ATCCTT
gi|10 : ------TATGACT-G--A--C-G--GA-TATG-T-AT-AC---ACATGTG-AGTGACT-TA-A-ACA-T-GAAA-TTT--C--AGAATTTATC-------AACAGA-TATCA--G--ACTT----CTGTTAT-AAA--CATTGA-ATTTT---C-TGGCAAT--TACA-----TATAGTATGTC--TAAAAA--TACCC-GG---TTTCATC---C--CAT-A-TACGCG-AT--ACGTAT--CGGGA-AGAA--T-ATCA---GATATACTA--ATACCGATTAAAACGTCAC-ATCCT
gi|11 : ccaatT-AT-G--CTG--AA-TATG-T-AA-AT---ATGT-TG-AACA--T-TA-A-GCAATAGACA-TTTTGC--AAAACAT-TT-------AACAAA-T--CA--G--ACTT----CTGT-AT-AAA--CAT--A-ATTTTT--CGTGAACTTAGTACA-----TAT-----GTC--TAAAAA--TA-TT-GA-TTTTTCGTCC-GC--CAT-A-T-CACA-AT--ACATATTGTGGGA-TGAAT-T-ATCAT--GATATACCGATATATCGA-TAAAACCTCAC-ATCCTT
gi|12 : actaaACT-AG-A--C-G--GA--AT--T-AACAC---ATGT--G-AACT--A-TA-A-ACAA---ACA-TTT--C--AGAATTTATC-------AACATA-T--CA-----ACTT----CTGT-AT-AAA--CAG--A-A-TTTT--C-TGCAA-G--TACATAAAGTAT-----GTC--T-GAAA--TACCC-GG---TTTCATC---C--CAT-A-TACGCGAAT--ACGTAT--CGGGA-AGAA--T-ATCA---GATATACTGA---AACGA-TAAAACGTCAC-ATCC
gi|13 : ttaatTCTCTC--TTATATT-CA--GCACTCCTTA--TGATGT-GTG-TTA--GCAC---AA-AAGA-AGTCAGA-TTTGGTTTATTTT-AAA--CATTT-T--AAACTTTG-TAAT-AGAAAACTATAAGAA--AA
gi|14 : TCTCTC--TTAT-TT-CA--GCACTCCTTA--TGATGT-GTG-TTA---CAC---AA-AAGA-AGTCAGA-TTTGGTTTATTTT-AAA--CATTT-T--AAACTTTG-TAAT-AGAAAACTATAAGAA--AA
gi|15 : TCTCTC--TTAT-TT-CA--GCACTCCTTA--TGATGT-GTG-TTA--GCAC---AA-AAGA-AGTCAG--TTTGGTTTATTTT-AAA--CATTT-T--AAC-TTTG-TAAT-AGAAAACTATAAGAA--AA
gi|16 : AGAAAGGTGGAA-AGACCTAATTATGACT-ATGA--C-G--GA-TATG-T-AA-ATCACATGT-TG-AGTA--T-TA-A-ACCCGAGAGA-TTT-ACATAAAACAT-TT-------A
gi|2 : TCTCTCA-TTAT-CT-CC--GTACTCCTTA--TG---T-GTA-TTA--ACCC---TA-AA-A-CGTCAGA-TTTGGTTTACTT--AAA--CA-TC-T--AA--TTTG-TATT-AGAAAACTGTAAGAAG-AAAAAAATAACGA-----------------AAAATATCAGATCAGATAAAAAT-AA-AATCATGAAA--TGA-CT-CACAACC--TA-TGTCAGGAAAAAT--AA-AGA------TATGACT-A--A--T-C--GA-TG-G-C-AA-AT---ATGT-TG-AGCA--T-TA-A-ACAATAGGCA-TTT-GC--AAAACTT-TT-------AACAAA-T--CA--G--ACTT----CTGC-AT-AAA--CAT--G-ATTTTT--C-TGGAATT--TACA-----TAT-----GTT--TAAAAA--TA-CC-GA-TTTTTCGTCC-GC--CGT-A-T-CGTG-AT--ATATATTGTGGGA-CGAAT-T-ATCAC--GATATACCGATATATCGA-TAAAACCTCAC-ATCCTT
gi|3 : TCTCTCA-TTAT-TT-CAAAGTACTCCTTA--TG---T-GTA-TTA--ACAC---TA-AA-A-CGTCAGA-TTTGGTCTACTTT-AAAAACA-TT-T--AA--TTTG-TATT-AGAAAACTGTAAGGA--AAAAAAAT-ATGA-----------------AAAATATCAGATCAGAAAAAAAT-CC-AATCATGAAA--TGATCT-CACAACC--TACTGTC-AGGAAAAT--AA-AGA------TATGACT-AT-G--C-G--AA-TATG-T--A-AT---ATGT-TG-AGCA----TA-A-AAAA-AGACT-TTT-CC----AACTT-TT-------AA-AAA-T--CA--G--ACTT----CTG--AT--AA--CAT--ATTTTTTT--C-TGGAATT--T-TA-----TAT-----GT---TAAAAA--TC-AC-GA-TTTTTCGTCC-GC--CGTAA-T-CGCG-ATAAACGTATTGTGGAA-CGAAT-T-ATCAC--GAT-------TATACCGA-TAAAACCTCAC-ATCCTT
gi|4 : TCTCTC--TAAT-TT-CA--GCACTCCTTA--TG---T-GTG-TTT--TCAC---AA-AA-A-CGT-----------TT-CTTT-AAA--CATTT-T--AA--TTTG-TATT-AGAAAACTGTAAG-A--AAAAAAATAACAA-----------------AAAATATCAGATCAGATAAAAAT-CA-AATCATGAAC--AGA-CT-CACAACC--TA-TGTCAAG-AAAAT--AA-AGG------TATGACTAAT-A--T-GCTGA--ATGAT-AA-AT---ATGT-TG-AACA--T-TA-A-GC-ATAGACATTTT-GCA-AAAACAT-TT-------AACAAATT--CA--G--ACTT----CTGT-AT-AAA--CAT--A-ATTTCT--G-TGAACTTAGTACA-----TAT-----GTC--TAAAAA--TA-TT-GATTTTTTCGTC---C--CAT-A-T-CACA-AT--ACATATTGT--GA-TG-AT-T-ATCAT--GATATACCGATATATCGA-TAAAACCTCAC-ATCCTT
gi|5 : --GCACTCCTTA--CG---T-GT--TT---GCAC---AA-AA---TGTCAGA-TTTGGTTTATTTT-AAA--CA-TT-T--AT--TTTG-TTAT-AGAAAACTGTAAGAA--GACAAATTTTCGT-----------------AAA--ATCAAATCAGAT---AAT-AA-------GAAA--TGA-CT-CGCAACCT-TA-TGTCAAGAAAAATA-AA-AAA------TATTACT-ATGA--C-G--AA-TA-G-T-AA-AT---CTGT-TGAAGTA--C-TA-A-ATAACAAAAC-TTT-TC--AGAACAT-TT-------AACAAA-T--CA--T--ACTTCAAACTGT-AT--AA--TAT--A-CTTTTT----GGGAAAT--TACA-----TAT-----GTC--ATAAAA--TA-CC-GG-TTTTTCATCCAAC--GGT-A-T-TGCG-AT--ACATATCATGGAA-TGAAT-T-ATCAC--GATGAACCGATATATCGA-TAAAAACTCACAATCCTT
gi|6 : TCCTTA--TG---T-GTG-TTATTACAT---AG-AA-A-TGCCAAA-TTTA-TTCATTTTTGAA--CA-TTCT--AT--TTTGCTATT-AAAAAACT-TAATAATTAAAACAATAACAATTGAAATTAATTAAATTAAAATATCAGATCAGATAC---T-AA---TCAAGGAA------CT-CACAACC----------------AT--AA-AAA------TATGACT-ATGA--C-A--AA-TATG-T-AA-AT---CTGT-TG-AGTA--TATT-A-GCAATAAACA-TTT-TC--AGAACTT-TT-------AACAAA----CA--T--ACTT----CTAT-AT-AAA--CAT--A-ATTTTT--C-TGGAATT--TACA-----TAT-----GTC--TAAAAA--TA-CTGGG-CTTTTTGTCT-GC--CGT-A-T-C---------------GTGGGA-CAAAA-C-ATCAC--GATATACTGATATA-CGA-TA------TAC-ATCCTT
gi|7 : caA--TG---TTGTG-TTA--GCAC---AA-AA-AACATCAGA-TTTG-TTTATTTT-AAA--CA-TT-T--A---TTTG-TAAT-AGAAAACTGTAAGAA--AACAAA-TAACGA-----------------AAAATAACAGATCAGATAA---TCAA-AATGATCGAC--TCA-AT-CACA--C--TA-TGTCAAGAA-----------------------CT-AT-GG-C-G--AA-TATG-T-AA-AT---ATGT-TG-AGCA--T-TA-A-ACAATAGACA-TTT-GT--AAAACTT-TT-------AACAAA-T--CA--GACACTT----CTGT-ATAAAA--AAT--A-ATTTTT--C-TGGAATT--TAC-------AT-----GTC--TAAATA--TA-CA-GA-TTTTTCGTCC-AC--CGT-A-T-CGCG-AT--ATGTATTGTGGGA-CAAAT-T-ATCAT--G----------ATATCGA-TAAAACCTCAC-ATCC
gi|8 : C---AACAA-A-TGTCAGA-TTTGGTTTATTTT-AAA--CA-TT-T--AA--TTTG-TAAT-AGAAAACTGTAAGAA--AACAAT-TAACGA-----------------AAAATATCAGATCAGATAACAAT-------CA---AA--TAA-CT-CACAACT--T--TGTCAAGAAAAAT--AA-AGA------TATGACT-ATGA--C-G--AA-TATG-T-AA-AT---ATGT-TA-AGCA--T-TA-A-ACAATAGACA-GTT-GC--AAAACTT-TT-------AACAAA-T--CA--G--ACTT----CTGT-AT-AAA--CAT--A-ATTTTT--C-TGGAATT--TACA-----TAT-----GTC--TAAAAA--TA-CC-GA-TTTTTCGTCC-GC--TGT-A-T-CGCG-AT--ATGTATTGTGGGA-CGAAT-A-ATCA----------CGATATATCGA-TAAAACATCAC-ATCCTT
gi|9 : AAT--AA-AAAAAT---TATGACT-G--A--C-G--GA-TATG-T-AA-AT---CTGT-TG-AGTA--T-TA-A-ACA-TGAACA-TTT-CC--AGAACTT-TTAAGTTTTAACAAA-T--CA--G--ACTT----CTGT-AT-AAG--CAT--A-ATTTTT--C-TGCAATT--TACA-----TAT-----GTC--TGAAAA--TA-CC-GG-TTTTTCATCA-AC--CGT-A-T-CGCG-AT--ACGTATCGTAGGA-CCAAT-T-ATCAC--GATATACTGATATATTGA-TAAAACATCAC-ATCCT
blockSeqs : A A . AA . ATG T . TTA . C GAA . G T AA T C . AAC C A . TT AA TTGAAATTAATTAAATT A CAAA T T T . TAC A GG . CCTAAT A TGA T CT . A . C CAC G A ACT . . AT T TG AT A AAGTTTT TAT GAC CAAA T A . TG T CG AG TAAAG AGTAT . . C G TT CAA . A . A A AA T . T . T CT AT C T A
blockSeqs : A . . . . ATG . . G . . GAA . G . . T . . AAC . A . G AA . A AAA T T . . TTA A A . AAT . TGA . . . . . . . . . TA . . CG . A A A . TT G . . . . . . C AG . . . . C . T CG . . . A . . T . T . C CC AT T . .
blockSeqs : . . . . . ATG . . G . . GAA . G . . T . . AC . A . . AA . A CCA T A . . TA G . . . . TGA . . . . . . . . . T . . AT . G . . . T G . . . . . . C . . . . . . . T CG . . . . . . T . T . C CT AT A . .
blockSeqs : . . . . . . . . A . . AAC . G . . T . . A . T . . AT . C CAA A T . . TA A . . . . TGG . . . . . . . . . A . . AT . C . . . T G . . . . . . C . . . . . . . T CG . . . . . . T . T . T CC AT T . .
blockSeqs : . . . . . . . . A . . AC . G . . . . . A . T . . AA . . AA T T . . TA A . . . . TGA . . . . . . . . . T . . AC . G . . . T G . . . . . . C . . . . . . . T TG . . . . . . C . T . C CC AT C . .
blockSeqs : . . . . . . . . T . . AC . G . . . . . A . T . . A . . AA . T . . T A . . . . TG . . . . . . . . . T . . AT . T . . . T G . . . . . . G . . . . . . . C CA . . . . . . T . A . C CC AT T . .
blockSeqs : . . . . . G . . AC . G . . . . . T . A . . T . . . . . . . . . . . . . GA . . . . . . . . . T . . AT . T . . . T T . . . . . . C . . . . . . . T CG . . . . . . T . T . T CT AT T . .
blockSeqs : . . . . G . . AT . . . . . . . T . T . . . . . . . TG . . . . . . . . . C . . AT . G . . . T T . . . . . . C . . . . . . . T AA . . . . . . C . T . C CT A T . .
blockSeqs : . . . . . . . AT . . . . . . . A . A . . . . . . TA . . . . . . . . . T . . T . G . . . T G . . . . . . C . . . . . . . T . . . . . . . . . T . . C T T . .
blockSeqs : . . T . . . . . . . . . A . . . . A . . . . . . . . . T . . A . C . . . T G . . . . . . C . . . . . . . . . . . . . . . . . . . . . . T . .
blockSeqs : . A . . . . . . . . . T . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . A . . . . . . . . . . . . T . . . . .
blockSeqCons : ** ** *** ** ** AA AA*** T** TA*** TGA** *** T*** N* G**** ** C*** ** ** CG* ** T* C** CC AT
originalCons : TCTCTCA-TTAT-TT-CA--GCACTCCTTA--TG---T-GTG-TTA--GCAC---AA-AA-A-CGTCAGA-TTTGGTTTATTTT-AAA--CA-TT-T--AA--TTTG-TANT-AGAAAACTGTAAGAA--AAAAAAATAACGA-----------------AAAATATCAGATCAGATAAAAAT-AA-AATCATGAAA--TGA-CT-CACAACC--TA-TGTCAAGAAAAAT--AA-AGA------TATGACT-AT-A--C-G--GA-TATG-T-AA-AT---ATGT-TG-AGCA--T-TA-A-ACAATAGACA-TTT-GC--AAAACTT-TT-------AACAAA-T--CA--G--ACTT----CTGT-AT-AAA--CAT--A-ATTTTT--C-TGGAATT--TACA-----TAT-----GTC--TAAAAA--TA-CC-GA-TTTTTCGTCC-GC--CGT-A-T-CGCG-AT--ACGTATTGTGGGA-CGAAT-T-ATCAC--GATATACCGATATATCGA-TAAAACCTCAC-ATCCTT
finalCons : TCTCTC--TTAT-TT-CA--GCACTCCTTA--TG---T-GTG-TTA--GCAC---AA-AA-A-CGTCAGA-TTTGGTTTATTTT-AAA--CA-TT-T--AA--TTTG-TANT-AGAAAACTGTAAGAA--AAAAAAATAACGA-----------------AAAATATCAGATCAGATAAAAATAA---ATCATGAAAT--GA-CT-CACAACCTA---TGTCAAGAAAAAT--AA-AGA------TATGACT-ATGA--C-G--GA-TATG-T-AA-AT---ATGT-TG-AGCAT---TA-A-ACAATAGACA-TTTN-C--AAAACTT-TT-------AACAAA-T--CAG----ACTT----CTGT-AT-AAA--CAT--A-ATTTTTC---TGGAATT--TACA-----TAT-----GTC--TAAAAA--TA-CC-GA-TTTTTCGTCCG-C--CGT-A-T-CGCG-AT--ACGTATTGTGGGA-CGAAT-T-ATCAC--GATATACCGATATATCGA-TAAAACCTCAC-ATCCTT
Alignments
lowQualScore : 11 222 1111 1 111 33333333333333333 1111111 11111 111111 11 1111111 111 111
lowQualScore : 99 5 5 66 55 111 4 4 999 666 3 1111 3 1 88 3 0 3 88 333 3 1 3 88 99 0 55555555555555555 33 9999999 3 777 5 5 44444 0 2 99 4 666666 555 2 55 3 3 3 3 888 3 3 8888 3 3 11 3 33 77 6 0000000 5555 77777 7777 3 3 44 44 6 7777 99 88888 88888 44 44 6 3 55 222 44 3 3 6 3 44 3 3 44 3 111 0 22 22 1 3 0 3
lowQualScore : .. . . .. .. ... . . ... ... . .... . . .. . . . .. ... . . . .. .. . ................. .. ....... . ... . . ..... . . .. . ...... ... . .. . . . . ... . . .... . . .. . .. .. . ....... .... ..... .... . . .. .. . .... .. ..... ..... .. .. . . .. ... .. . . . . .. . . .. . ... . .. .. . . . .
lowQualScore : 33 7 7 99 55 000 0 0 444 444 6 2222 6 4 66 6 9 6 66 888 6 0 6 66 99 4 00000000000000000 44 4444444 4 222 0 0 11111 1 4 55 0 888888 444 2 88 1 1 1 1 555 1 1 3333 1 1 99 1 22 33 2 0000000 2222 55555 1111 3 3 66 66 7 5555 22 33333 33333 66 66 7 3 00 888 66 3 3 7 3 66 7 3 77 3 111 3 00 22 0 3 4 3
consensus : TCTCTCA-TTAT-TT-CA--GCACTCCTTA--TG---T-GTG-TTA--GCAC---AA-AA-A-CGTCAGA-TTTGGTTTATTTT--AAA-CA-TT-T--AA--TTTG-TANT-AGAAAACTGTAAGAA--AAAAAAATAACGA-----------------AAAATATCAGATCAGATAAAAAT-AA--A-TCATGAAA--TGA-CT-CACAACC--TA-TGTCAAGAAAAAT--AA-AGA------TATGAC---TATGA-CGGA-TATG-T-AA-AT---ATGT-TG-AGCA--T-TA-A-ACAATAGACA-TTTN-C--AAAACTT-TT-------AACAAA-T--CA--G--ACTT----CTGT-AT-AAA--CAT--A-ATTTTT--C-TGGAATT--TACA-----TAT-----GTC--TAAAAA--TA-CC-GA-TTTTTCGTCC-GC--CGT-A-T-CGCG-AT--ACGTATTGTGGGA-CGAAT-T-ATCAC--GATATACCGATATATCGA-TAAAACCTCAC-ATCCTT
Reference ( family-993 ) : TCTCTC--TTAT-TT-CA--GCACTCCTTA--TG---T-GTG-TTA--GCAC---AA-AA-A-CGTCAGA-TTTGGTTTATTTT--AAA-CA-TT-T--AA--TTTG-TANT-AGAAAACTGTAAGAA--AAAAAAATAACGA-----------------AAAATATCAGATCAGATAAAAAT-AA--A-TCATGAAA--TGA-CT-CACAACC--TA-TGTCAAGAAAAAT--AA-AGA------TATGAC---TATGA-CGGA-TATG-T-AA-AT---ATGT-TG-AGCA--T-TA-A-ACAATAGACA-TTTN-C--AAAACTT-TT-------AACAAA-T--CA--G--ACTT----CTGT-AT-AAA--CAT--A-ATTTTT--C-TGGAATT--TACA-----TAT-----GTC--TAAAAA--TA-CC-GA-TTTTTCGTCC-GC--CGT-A-T-CGCG-AT--ACGTATTGTGGGA-CGAAT-T-ATCAC--GATATACCGATATATCGA-TAAAACCTCAC-ATCCTT
gi|1 : TCTCTCAATTAT-TTTCA--GTACTCCTTAAGTG---T-GTGATTA--ACACCATAA-AA-A-CAGCAGGGTTTGGTTTACATT--AAAACA-TT-TCTAA--TTTG-TATTTAGAAAACTGTAAGGA--AAAGA--TAACGA-----------------AAAATAT--GATCAGATAAAAAT-AACAA-TCTTGAAAACTGA-CTTCA-AACTCATA-TGTCAGGGAAAAT--AGGAGA------TATGCT---TATGGGCAGAATATG-TCAA-ATT--ATGT-TG-AGCAC-T-TATATACAATGGACA-TTTTGC--AAAACTG-T--------AACAAA-A--TAACG--ATTT----TTGT-AT-AAAAGCAT--AGATTTTTGTCGTGGAATT--TACA-----TAT-----GTTCGTAAAAAGATA-CC-GA-CTTTTCGTCCCGCATCGT-AAT-CGCA-AT--ACGTATTGTGGGACCGAATATAATCACAGGAAATA-----ATACCGA-TAATACCTCAC-ATCCTT
gi|10 : ------TATGAC---T--GA-CGGA-TATG-T-AT-AC---ACATGTG-AGTGACT-TA-A-ACA-T-GAAA-TTT--C--AGAATTTATC-------AACAGA-TATCA--G--ACTT----CTGTTAT-AAA--CATTGA-ATTTT---C-TGGCAAT--TACA-----TATAGTATGTC--TAAAAA--TACCC-GG---TTTCATC---C--CAT-A-TACGCG-AT--ACGTAT--CGGGA-AGAA--T-ATCA---GATATACTA--ATACCGATTAAAACGTCAC-ATCCT
gi|11 : ccaat---TATGC-TGAA-TATG-T-AA-AT---ATGT-TG-AACA--T-TA-A-GCAATAGACA-TTTTGC--AAAACAT-TT-------AACAAA-T--CA--G--ACTT----CTGT-AT-AAA--CAT--A-ATTTTT--CGTGAACTTAGTACA-----TAT-----GTC--TAAAAA--TA-TT-GA-TTTTTCGTCC-GC--CAT-A-T-CACA-AT--ACATATTGTGGGA-TGAAT-T-ATCAT--GATATACCGATATATCGA-TAAAACCTCAC-ATCCTT
gi|12 : actaaAC---TA-GA-CGGA--AT--T-AACAC---ATGT--G-AACT--A-TA-A-ACAA---ACA-TTT--C--AGAATTTATC-------AACATA-T--CA-----ACTT----CTGT-AT-AAA--CAG--A-A-TTTT--C-TGCAA-G--TACATAAAGTAT-----GTC--T-GAAA--TACCC-GG---TTTCATC---C--CAT-A-TACGCGAAT--ACGTAT--CGGGA-AGAA--T-ATCA---GATATACTGA---AACGA-TAAAACGTCAC-ATCC
gi|13 : ttaatTCTCTC--TTATATT-CA--GCACTCCTTA--TGATGT-GTG-TTA--GCAC---AA-AAGA-AGTCAGA-TTTGGTTTATTTT--AAA-CATTT-T--AAACTTTG-TAAT-AGAAAACTATAAGAA--AA
gi|14 : TCTCTC--TTAT-TT-CA--GCACTCCTTA--TGATGT-GTG-TTA---CAC---AA-AAGA-AGTCAGA-TTTGGTTTATTTT--AAA-CATTT-T--AAACTTTG-TAAT-AGAAAACTATAAGAA--AA
gi|15 : TCTCTC--TTAT-TT-CA--GCACTCCTTA--TGATGT-GTG-TTA--GCAC---AA-AAGA-AGTCAG--TTTGGTTTATTTT--AAA-CATTT-T--AAC-TTTG-TAAT-AGAAAACTATAAGAA--AA
gi|16 : AGAAAGGTGGAA-AGACCTAATTATGAC---TATGA-CGGA-TATG-T-AA-ATCACATGT-TG-AGTA--T-TA-A-ACCCGAGAGA-TTTA-CATAAAACAT-TT-------A
gi|2 : TCTCTCA-TTAT-CT-CC--GTACTCCTTA--TG---T-GTA-TTA--ACCC---TA-AA-A-CGTCAGA-TTTGGTTTACTT---AAA-CA-TC-T--AA--TTTG-TATT-AGAAAACTGTAAGAAG-AAAAAAATAACGA-----------------AAAATATCAGATCAGATAAAAAT-AA--AATCATGAAA--TGA-CT-CACAACC--TA-TGTCAGGAAAAAT--AA-AGA------TATGAC---TA--A-TCGA-TG-G-C-AA-AT---ATGT-TG-AGCA--T-TA-A-ACAATAGGCA-TTTG-C--AAAACTT-TT-------AACAAA-T--CA--G--ACTT----CTGC-AT-AAA--CAT--G-ATTTTT--C-TGGAATT--TACA-----TAT-----GTT--TAAAAA--TA-CC-GA-TTTTTCGTCC-GC--CGT-A-T-CGTG-AT--ATATATTGTGGGA-CGAAT-T-ATCAC--GATATACCGATATATCGA-TAAAACCTCAC-ATCCTT
gi|3 : TCTCTCA-TTAT-TT-CAAAGTACTCCTTA--TG---T-GTA-TTA--ACAC---TA-AA-A-CGTCAGA-TTTGGTCTACTTTAAAAA-CA-TT-T--AA--TTTG-TATT-AGAAAACTGTAAGGA--AAAAAAAT-ATGA-----------------AAAATATCAGATCAGAAAAAAATCCA--A-TCATGAAA--TGATCT-CACAACC--TACTGTC-AGGAAAAT--AA-AGA------TATGAC---TATG--CGAA-TATG-T--A-AT---ATGT-TG-AGCA----TA-A-AAAA-AGACT-TTTC-C----AACTT-TT-------AA-AAA-T--CA--G--ACTT----CTG--AT--AA--CAT--ATTTTTTT--C-TGGAATT--T-TA-----TAT-----GT---TAAAAA--TC-AC-GA-TTTTTCGTCC-GC--CGTAA-T-CGCG-ATAAACGTATTGTGGAA-CGAAT-T-ATCAC--GAT-------TATACCGA-TAAAACCTCAC-ATCCTT
gi|4 : TCTCTC--TAAT-TT-CA--GCACTCCTTA--TG---T-GTG-TTT--TCAC---AA-AA-A-CGT-----------TT-CTTT--AAA-CA-TT-TT-AA--TTTG-TATT-AGAAAACTGTAAG-A--AAAAAAATAACAA-----------------AAAATATCAGATCAGATAAAAATCAA--A-TCATGAAC--AGA-CT-CACAACC--TA-TGTCAAG-AAAAT--AA-AGG------TATGACTAATATG--CTGA--ATGAT-AA-AT---ATGT-TG-AACA--T-TA-A-GC-ATAGACATTTTG-CA-AAAACAT-TT-------AACAAATT--CA--G--ACTT----CTGT-AT-AAA--CAT--A-ATTTCT--G-TGAACTTAGTACA-----TAT-----GTC--TAAAAA--TA-TT-GATTTTTTCGTC---C--CAT-A-T-CACA-AT--ACATATTGT--GA-TG-AT-T-ATCAT--GATATACCGATATATCGA-TAAAACCTCAC-ATCCTT
gi|5 : --GCACTCCTTA--CG---T-GT--TT---GCAC---AA-AA---TGTCAGA-TTTGGTTTATTTT--AAA-CA-TT-T--AT--TTTG-TTAT-AGAAAACTGTAAGAA--GACAAATTTTCGT-----------------AAA--ATCAAATCAGAT---AAT-AA--------GAAA--TGA-CT-CGCAACCT-TA-TGTCAAGAAAAATA-AA-AAA------TATTAC---TATGA-CGAA-TA-G-T-AA-AT---CTGT-TGAAGTA--C-TA-A-ATAACAAAAC-TTTT-C--AGAACAT-TT-------AACAAA-T--CA--T--ACTTCAAACTGT-AT--AA--TAT--A-CTTTTT----GGGAAAT--TACA-----TAT-----GTC--ATAAAA--TA-CC-GG-TTTTTCATCCAAC--GGT-A-T-TGCG-AT--ACATATCATGGAA-TGAAT-T-ATCAC--GATGAACCGATATATCGA-TAAAAACTCACAATCCTT
gi|6 : TCCTTA--TG---T-GTG-TTATTACAT---AG-AA-A-TGCCAAA-TTTA-TTCATTTTT-GAA-CA-TTCT--AT--TTTGCTATT-AAAAAACT-TAATAATTAAAACAATAACAATTGAAATTAATTAAATTAAAATATCAGATCAGATA----C-TA--A-TCAAGGAA------CT-CACAACC----------------AT--AA-AAA------TATGAC---TATGA-CAAA-TATG-T-AA-AT---CTGT-TG-AGTA--TATT-A-GCAATAAACA-TTTT-C--AGAACTT-TT-------AACAAA----CA--T--ACTT----CTAT-AT-AAA--CAT--A-ATTTTT--C-TGGAATT--TACA-----TAT-----GTC--TAAAAA--TA-CTGGG-CTTTTTGTCT-GC--CGT-A-T-C---------------GTGGGA-CAAAA-C-ATCAC--GATATACTGATATA-CGA-TA------TAC-ATCCTT
gi|7 : caA--TG---TTGTG-TTA--GCAC---AA-AA-AACATCAGA-TTTG-TTTATTTT--AAA-CA-TT-T--A---TTTG-TAAT-AGAAAACTGTAAGAA--AACAAA-TAACGA-----------------AAAATAACAGATCAGATAATCA--AA--A-TGATCGAC--TCA-AT-CACA--C--TA-TGTCAAGAA-----------------------C---TATGG-CGAA-TATG-T-AA-AT---ATGT-TG-AGCA--T-TA-A-ACAATAGACA-TTTG-T--AAAACTT-TT-------AACAAA-T--CA--GACACTT----CTGT-ATAAAA--AAT--A-ATTTTT--C-TGGAATT--TAC-------AT-----GTC--TAAATA--TA-CA-GA-TTTTTCGTCC-AC--CGT-A-T-CGCG-AT--ATGTATTGTGGGA-CAAAT-T-ATCAT--G----------ATATCGA-TAAAACCTCAC-ATCC
gi|8 : C---AACAA-A-TGTCAGA-TTTGGTTTATTTT--AAA-CA-TT-T--AA--TTTG-TAAT-AGAAAACTGTAAGAA--AACAAT-TAACGA-----------------AAAATATCAGATCAGATAACAAT--------CA---AA--TAA-CT-CACAACT--T--TGTCAAGAAAAAT--AA-AGA------TATGAC---TATGA-CGAA-TATG-T-AA-AT---ATGT-TA-AGCA--T-TA-A-ACAATAGACA-GTTG-C--AAAACTT-TT-------AACAAA-T--CA--G--ACTT----CTGT-AT-AAA--CAT--A-ATTTTT--C-TGGAATT--TACA-----TAT-----GTC--TAAAAA--TA-CC-GA-TTTTTCGTCC-GC--TGT-A-T-CGCG-AT--ATGTATTGTGGGA-CGAAT-A-ATCA----------CGATATATCGA-TAAAACATCAC-ATCCTT
gi|9 : AAT--AA-AAAAAT---TATGAC---T--GA-CGGA-TATG-T-AA-AT---CTGT-TG-AGTA--T-TA-A-ACA-TGAACA-TTTC-C--AGAACTT-TTAAGTTTTAACAAA-T--CA--G--ACTT----CTGT-AT-AAG--CAT--A-ATTTTT--C-TGCAATT--TACA-----TAT-----GTC--TGAAAA--TA-CC-GG-TTTTTCATCA-AC--CGT-A-T-CGCG-AT--ACGTATCGTAGGA-CCAAT-T-ATCAC--GATATACTGATATATTGA-TAAAACATCAC-ATCCT