lowQualScore : 1 1 1 1 1 1 1 11111 111 1 1 11 222 11 1 1 1 1 3 222222 11 11 11 111 1 222222 2222 11 11111 222222 11 111 3 333333333333333 111 111 77777777777777777777777777777777 222222 2 33 8888888 1 4444444444 44444444444444 111 222 22222222222
lowQualScore : 0 0 2 0 2 0 0 55 0 0 88888 777 2 0 0 33 666 8 0 8 2 33 0 0 6 6666 0 2 0 666666 2 6 33 00 33 777 1 8 0 888888 1111 22 6 66666 88 8 888888 8 0 11 1 111 6 666 99 7 88888 1 6 7 0 5 99 999999999999999 999 6 6 111 6 00000000000000000000000000000000 6 222222 3 0 0 00 0000000 4 3 6 99 4444444444 3 3 3 8 66666666666666 3 5 8 777 8 8 3 888 5 44444444444 77 99 8 1 2
lowQualScore : . . . . . . . .. . . ..... ... . . . .. ... . . . . .. . . . .... . . . ...... . . .. .. .. ... . . . ...... .... .. . ..... .. . ...... . . .. . ... . ... .. . ..... . . . . . .. ............... ... . . ... . ................................ . ...... . . . .. ....... . . . .. .......... . . . . .............. . . . ... . . . ... . ........... .. .. . . .
lowQualScore : 0 0 5 0 5 0 0 22 0 0 55555 555 5 0 0 88 000 0 8 8 5 88 0 0 2 0000 0 5 0 222222 5 0 88 22 88 555 4 0 0 888888 2222 22 4 00000 88 0 888888 0 8 00 4 777 7 888 22 5 55555 7 7 5 6 4 22 333333333333333 222 7 7 777 7 88888888888888888888888888888888 7 888888 8 7 0 00 0000000 0 2 2 22 0000000000 8 2 8 0 55555555555555 2 6 0 000 0 0 8 222 6 33333333333 99 77 4 3 5
consensus : ATTATACCT-CAAG-GGATAG-ACACG-ACGA-TTATTG-AAAT-ACGATTGG---T-TGAACAGA---TCAC-G-TGA--TC--GGGGCGAC-AAAACTTCATGTACCCCTCC--CTC-G-GTGTGCCTCGGGACGT-CGTGTACTGGCATCCCT-CG---GGGAGCCT--CGC-GTT--TTTTCTTACGAGA---GATA-TTTTCAAGCTGTTA-ACT------GTTA----TTGTTACTATNT---T-GTTAT-T-GTT-T----GACAG-TTGTTGA--TAGGTGAA---A-TTAC-AT--ACAATTTA-T-A-ATCTACA-TTGAATTGT-AT--AAAAT---GA---A----T-ATCCTAAA-CA-GA-A---A-AAA--TCNAAATGC------ATGTATT-G-TA-TTAAAT-TTGCTG----GGTTTTTTTTTCTCGTTGTCTGTTTGGGTTTTTTTT---CGGTTATAATANACAATTTATTGCCCTGCTAGAAGGGAGACATG--AA-------GC-TTTGTCCAACCCAGTAA-TATCATGTCCCG-CGGGCGTTGCCCTCG-GGGG--ACATGA-TA-TTACTGGGTTGGACAAA--CT-------T--CATGTCTCCCTT-CTAGCAGGGCAATAAATGTA
Reference ( gi|3 ) : ATTATACCT-CAAG-GGATAG-ACACG-ACGA-TTACTG-AAAT-ACGATTGG---T-TGAACAGA---TCAC-G-TGA--TC--AGGGCGAC-AAAACTTCATGTACCCCTCC--CTC-G-GAGTGCCTCGGGACGT-CGTGTACTG-CATCCCT-GG---GGGAGTCT--CGC-GTT--TTTTCTTACGAGA---GATA-TTTTCAAGCTGTTA-ACT------GTTA----TTGTTGATATCT---T-GTTAT-T-GTT-T----GACAG-CTGTTGA--CAGGTGAA---A-TTGC-AT--ACAATTCA-T-A-ATCTACA-TTAAATTGTAAT--AAAAT---GA---A----T-ATCCTAAA-CA-GA-A---A-AAA--TCGAAATGC------ATGTATT-GCTAATTAAAT-TTGCTG----GGTTTTTTTTTTTCGTTG-TTGTTTGTTTTTTTTTTTTCCGG-TATAATAAACAATTTATTGCCCTGCTTGGAGGGAGACATG--AA-------GC-TTTGTCCAACCCAGTAA-TATCATGTCCCA-CGGGCGTTGCCCTCG-GGGG--ACATGA-TA-TTACAGAGTTGGACAAA-GCT-------T--CATGTCTCCCTC-CTAGCAGGGCAATAAATGTA
gi|6 : ATTCTACCT-CAAG-GGATAG-ACA-G-ACGAATTATTG-AAAT-ACGATTGG---TCTGAACAGA---TCAC-G-TGA--TC--GGGGCAAC-AAA--TTCATGTAC---TCC--CTC-G-GTGTGCATCGGGACGT-CGTGTACTGGCATCCCT-CG---GG-AGCCTGCCGT-TTT--TTTTCTTACAAGA---GTTG-TTTTCAAGCTGTTTTACT------GTTA----TTGTTACTATAT---T-GTTAT-T-GTT-T----GACAG-TTGTTGA--TACGAGAA---A-TTAC-AT--ACAATTTA-T-A-ATTT-CA-TTGAATGGT-AT--AAATT---AA---C----T-AATTTAAA--A-AA-A---A-AAA--TCTAAAT-----------TAT----------AAT-TTGGT-----GGTTTTATTTTCTTGTTG-CT
gi|5 : TTATACCT-CAAG-G-ATAG-ACACG-ACGA-TTATTG-AAAT-ACGATTGG---T-TGAACAGA---TCAC-G-TGA--TCGGAGGGCAACAAAAACTTCATGTACCCCTCCCTCTC-GTGTGTGCCCTCGGACGT-CGTGTACTGCCATCCCTCGG---GGGACCCT--CGC-GTT--TTTTCTTACAAGA---GTTGTTTTTCAAGCTGTTA-CTT------GTTA----TTGTTACTATAT---TGGTTA--T-GTTGC----AACAGTTTGTTGA--TAAGAGGAAACA-TTAC-AT--ACAATTTA-T-ACATTTACACTTGAATGGTTATACAAAATTTAGA---C----TAATTCTAA---A-AA-A---A-AAA--TCAAAAAACTCTGAAATATA---------TAAAT-TTGT------GGTTTCTATTTCTTGTT
gi|10 : tTTATACCT-CAAG-GGATAGGACACGCACGA-TTACTG-AAAT-ACGATTGGAAGT-TGAACAGAGATCCACTG-TGAAATC--GCGGCGAC-AAAACTTCATGTCCGCATCC--TTCCG-GAGTGCCTCGGGACGTTCGT-TACTGGCATCTCT-CGCACAGGAGCCT--CGCTATTGTTTTTCTTAGGAGA---GATA-TTTCCAAGCTCTT
gi|16 : TATACCTTCAATTGGATAG-ACACG-ACGA-TT-TTGAAAATGACGATAGG---T-TGAGCAGA---T-AC-GTTTA--TCT-GGGGCGAC-AAAA
gi|7 : GGCGAC-AAAACTTCATGTACCCCTCC--CTC-G-G----------GACGT-CGTGTACTG-CATCCCC-CG---GGGAGCAT--CGC-GTT--TTTTCTTACGAGATCAGATA-TTTTCAAGCTGTTA-ACT------GTTA----TTGTTGCTATCT---T-GTTAT-T-GTT-T----GACAG-CTGTTGA--CAGGTGAA---A-TTAA-AT--ACAATTTA-T-A-ATCTACA-TTGAATTGT-AT--AAAAT---GAAT-A----T-ATCCTAAA-CA-TA-A---ACAAA--TCCAAATGC------ATGTATT-GCTAATTAAAT-T
gi|9 : ATA-TTTTCAAATTGTGA-ACTTATTCAGTTACTATTTGTTACTGTTTGTTT-GTTAT-TTGTT-TCTTTAACAG-TTGTTGA--TCATTGGA---A-TTAC-AT--ACAATTTA-C-A-ATCCGTA-TTCAATTGC-AT--GAAAT----A---A----G-GCTGTAAA--A-GATA---A-ACACTTTG--ATGC---------TACT-G----TTAAACATTGCTG----ATCTTTTTCTCT
gi|18 : acATATTT---C-GTTATCT-GTT------GACAG-CTG-TGACCCAGGTGAA---A-TTACAATAAACAACTGATT-C-ATCTACA-TTGAgtaataaacaattcattgcc
gi|13 : atcgctGTGAA---AATTAC-AT--ACAATTTA-TAA-ATCTACA-TTGAATTGT-AT--AAAAT---GATTTAAACTT-ATCTTAAG-CACGA-A---A-AAA---------------------ATTAGATACT--AAT-TTGCTGTTTTGGTCTTTTTT
gi|8 : AT--AAAAT---GA---A----T-ATCCTAAAACA-GA-ATAAA-AAA--TCCAAATGC------ATGTATT-GCTAATTAAAT-TTGCTG----GG---TTTTTTTTCGTTGTTTGTTTGGGTTTTTTTT---CGGTTATAATAAACAATTTATTGCCCTGCTAGGAGGGAGACATG--AA-------G--TTTGTCCAA-CCAGT-A-TATCAT------------GTTGTCCTCG-GTGG--TCATGA-TAGTTACTGGGTTGGACAAACGCT-------T--CATGTCTCCCc
gi|2 : gaattttgatATATACA-TTTATTGCACGGCAGTGAGGAAGATATG--AA-------GA-TTTATTCCGCCTACAAA-AGTCATATCC
gi|19 : cgctgacctaggaATTTATTGCCCTGCTAGAAGGGAGATGTG--cttaataagatattatacatttattgcacggcagtaggaagatatgaagatttattgtatataacgaccttaagatagtctgaaatctttcgacatccagatacatgtcttcagtctaaatgtaacatggcggcttgatgacccattagactgaacattatgaacaagtttcatatactttttgctgctatcttctcccagacctctttttgataaagttggagaccgctgaattttgtactttgtcttttttcaacttcgttcgtcaatattgctacttatctctgaagcggaaaaactcgtacacgttccttgccatttccaaaacctttcagactatataagcacgaactattcgctagttacatgtaagaacatcaaaattaaatgcgtttacaatatagcgagaacagccgaacacctgttttaaatgttttctatggaaacttgcaacattcatatttttatacaacttcacatgacagcagcctagctgtgtgtatatttttgttaaggatatcaaacattgcagacaacacctctagtaccttttgatcccttttttcattttccaaactgagttatctcattttagcatttattacaatatgttaagcatggaacttacgtgtgatttttcttaagagttttatatctcaagatatttttgtgaatcttacgattgtcacaagtcagaacttaagacaattt
gi|20 : ATTTATTGCCCTGCTAGAAGGGAGgtat
gi|11 : CTACTGGAAGGGAGACATG--AAAGCGACAGC-TTTGTCCG-CCCAGTAA-TATCACGTCCCCTCGGGCGTTGCCCTCG-AGGA----ATGA-TA-TCACTG-GTTGTACAG----T-------TAACATGTC---------------GCAATAAATGTAgtata
gi|8 : GGGAGACATG--AA-------GCGTTTGTCCAACCCAGTAACTATCATG-ACCA-C------------CG-AGGACAACATGA-TA-T-ACTG-GTTGGACAAA--CT-------T--CATGTCTCCCTC-CTAGCAGGGCAATAAATt
gi|11 : gaattttgatataaaatgaatatcctaaaacagaataaaaaatccaaatgcatgtattgctaattaaatttgctgggttttttttcgttgtttgtttgggttttttttcggttataataaacaGACATGTTAA-----------CTGTACAACC-AGTGA-TATCATTCCTCG-AGGGCAACGCCC--GAGGGG--ACGTGA-TA-TTACTGGGC-GGACAAA-GCTGTCGCTTT--CATGTCTCCCTT-CCAGTAG
gi|2 : CGCTGACCTAG-GAGG--ATATGACTT-TTGTAG-GCGGAATAAA-TCT-------T--CATATCTTCCTCACT-GCCGTGCAATAAATGTAgcaataaatgtat
gi|2 : ATAAA-TCT-------T--CATATCTTCCTA-CT-GCCGTGCAATAAATGTAtatcttaataagatattatacatttattgcacggcagtaggaagatatgaagatttattgtatataacgaccttaagatagtctgaaatctttcgacatccagatacatgtcttcagtctaaatgtaacatggcggcttgatgacccattagactgaacattatgaacaagtttcatatactttttgctgctatcttctcccagacctctttttgataaagttggagaccgctgaattttgtactttgtcttttttcaacttcgttcgtcaatattgctacttatctctgaagcggaaaaactcgtacacgttccttgccatttccaaaacctttcagactatataagcacgaactattcgctagttacatgtaagaacatcaaaattaaatgcgtttacaatatagcgagaacagccgaacacctgttttaaatgttttctatggaaacttgcaacattcatatttttatacaacttcacatgacagcagcctagctgtgtgtatatttttgttaaggatatcaaacattgcagacaacacctctagtaccttttgatcccttttttcattttccaaactgagttatctcattttagcatttattacaatatgttaagcatggaacttacgtgtgatttttcttaagagttttatatctcaagatatttttgtgaatcttacgattgtcacaagtcagaacttaagacaattt
gi|19 : cgctgacctaggaggatatgacttttgtaggcggaataaatcttcatatcttcctcactgccgtgcaataaatgtatatcttaataagatatta--CACATCTCCCTT-CTAGCAGGGCAATAAATGTAtgtatataacgaccttaagatagtctgaaatctttcgacatccagatacatgtcttcagtctaaatgtaacatggcggcttgatgacccattagactgaacattatgaacaagtttcatatactttttgctgctatcttctcccagacctctttttgataaagttggagaccgctgaattttgtactttgtcttttttcaacttcgttcgtcaatattgctacttatctctgaagcggaaaaactcgtacacgttccttgccatttccaaaacctttcagactatataagcacgaactattcgctagttacatgtaagaacatcaaaattaaatgcgtttacaatatagcgagaacagccgaacacctgttttaaatgttttctatggaaacttgcaacattcatatttttatacaacttcacatgacagcagcctagctgtgtgtatatttttgttaaggatatcaaacattgcagacaacacctctagtaccttttgatcccttttttcattttccaaactgagttatctcattttagcatttattacaatatgttaagcatggaacttacgtgtgatttttcttaagagttttatatctcaagatatttttgtgaatcttacgattgtcacaagtcagaacttaagacaattt
gi|20 : CTCCCTT-CTAGCAGGGCAATAAATGTAt
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|1 ): TTGAATCAAATGTTTCGAATTTTCTATCTGGGTGAAACTTTTAAATAATTTCCAATATGACACATCTAAGACATAATTGAAGTTATTGTTGCATATAAAATATAAAAAAACTAAAAAGCTCCGGAGCCCGAAACCCTTAGTGGAAGGATACTGATGTTTTGTAGGCGAGAATAAAAACAGTGTTCATCCCATGGCTTTACCTCACTGCCGTGCATAAATGTTACTACACCAGTCTTAAAAGATGAGAGACAATATGAACTATTACATTACCTTGCACGCAGTCAAAGTGAAAGAGATATGAAGATTTATTGTTCCCCCCAGTCATATGAAACGACCTAAGATAGTTCTAAGAAAATATCCTTGTCGTAAGCCCAGTTCTCAGATACATACCTGGTCATATCAAGTCTAAGGCATGTCAAACATGGCGTGCTTGATAGACCCAATTTAAGAACTGAATCGATCCTTATGAACAAGTTCTCATAATACTTATTATGCTAATTGCTAAGTTCTGCCCCAACCTCTGTGATAATAGTGTGACGCGTGCTCTGAGAAGTTCTGTCACTTGTCTTATTATTTCAAACCACTATCGTTCGGTCAATATTGCCTACTTATCTCTGAAAGCGCGAAAACAAAATATCTGCGTACCCATAAGTTCCTTGCTATTTCCAAATATTCGCCTTACAAATAGTGAACTAATATAAAGCACGAGAACTATTCGATCGTAGTACATTTGTAAGAATCATCAAAATTAATTAATGACGTTACATTATAGCGGAAGAAACAGCCGAACACCTGTTTTACTGTTTCTACTGAAGAAACTTGTCAGAACAATATCAGGATGGCCCAATTTTTAATTAGCAACATTCCACAATGACAGCAGTTATCCTAGCTGTGTGGGTATGATTGTTTGTGTAAAGAGTATAATCGAATATAACACATTGACAGACAGGCAGACTACCCTTCTAGTACCATTTTGATCCCTATTTTTCATTTCTCCAAAACTGAGTTATCCTCACTTTTTAAGCATCTTATTACAATATGGTTAAGCATGGAGATCTACGGGTGATTTATATCTTAAGATGTGGTTTATCATCCCTCAAGATAATTTTATTTCCCCTGTGAATCTTACGATATTGTCACCCAACAGTCAGAACTTTAGAAGGGTAACATTTA
Unaligned ( gi|4 ): CGGACTAAGATCTGTCTTAAGACCAAAATTTGTCATAAGCTTGCAACATTAATAATTTTATGCAACTTTTTATGACAACAGCCTAGCTACATATATAATTTTCTTGAAATAGAAGAGAAAAAAAATATTTAGGGATATCCGTATCCTTGGACTACTAGTATATAGAACATTTCATATCCTTTTGATCCTTTTTTTAACTCCCGAAACTGAGTTTTCTTAATTTTAGTATTTGCTACAATATCCCAGAAGAAAATGTTAAGCATAAAACTTATCGTAAGATTTATCTTAAGATTTTTATAACTTAAGATAGTTTTGTGAAACAGCAGTGGCAATCTTTATGATTGTCATAAGTTAGATCTTAAGATAAT
Unaligned ( gi|12 ): AAACATTAAAAAAAAAAAGATTTTCTAGGCGGAAGAAATCTGCATATCCCCCTCACTGCGTGCAATAGAATGTTATGTGTCTATTAAGTTTATATCAAAATCCAATATTGTAC
Unaligned ( gi|14 ): TGAATAAAGTTGTAATTTCTATCTTGAAACTTTATATTCATATGCCATTCTGCATAATTGAATTATTGTTGCAAAATAAATAA
Unaligned ( gi|15 ): GAAGTAGAAGGGTTGTGTAAACTATAAAATATCTTCATATCTTCCTCACTGCCGTGCAATAATAAAATCATTAATTAAATA
Unaligned ( gi|17 ): AGAATTTTATAACTTAAGATAGTTTTGTGAAACAGCAGTGGCAATCTTATGATTGTCATAAGTTAGATCTTAAGATAAT
Alignments
lowQualScore : 111 111 11 1111 11 1 1 111 11 11 111 222222 1111 11111 222222 111 111 111 222222222222222 111 111 55555555555555 22222 2 333 1 4444444 111 2222222 11 1 333 11111
lowQualScore : 8 8 8 8 8 0 8 8 444 8 444 8 8 11 2222 6 5 11 8 8 1 8 5 8 444 11 8 11 444 6 8 333333 4444 2 1 11111 6 6 222222 6 99 000 5 5 77 5 5 5 0 5 000 000 5 888888888888888 333 5 5 000 5 1 1 44444444444444 5 55555 0 3 55 555 5 1 4 1 3333333 6 000 7 6666666 0 0 00 0 6 0 555 99 11111 3 2
lowQualScore : . . . . . . . . ... . ... . . .. .... . . .. . . . . . . ... .. . .. ... . . ...... .... . . ..... . . ...... . .. ... . . .. . . . . . ... ... . ............... ... . . ... . . . .............. . ..... . . .. ... . . . . ....... . ... . ....... . . .. . . . ... .. ..... . .
lowQualScore : 0 0 0 0 0 8 0 0 000 0 000 0 0 00 2222 7 0 00 0 0 2 0 0 0 000 00 0 00 000 7 0 000000 2222 5 0 88888 7 7 555555 7 22 000 7 7 99 7 7 7 1 7 000 000 7 444444444444444 777 7 7 000 7 0 7 33333333333333 7 00000 8 0 00 000 5 0 7 0 3333333 7 000 3 0000000 2 2 00 0 5 2 888 22 55555 0 5
consensus : ATTATACCT-CAAG-GGATAG-ACACG-ACGA-TTATTG-AAAT-ACGATTGG---T-TGAACAGA---TCAC-G-TGA--TC-G--GGGCGAC-AAAACTTCATGTACCCCTCC--CTC-G-GNGTGCCTCGGGACG-TCGTGTACTGGCATCCCTC-G---GGGAGCCT--CGC-GT--TTTTTCTTACGAGA---GATA-TTTTCAAGCTGTTA-ACT------GTTA----TTGTTACTATNT---T-GTTAT-T-GTT-T----GACAG-CTGTTGA--CAGGTGAA---A-TTAC-AT--ACAATTTA-TA-A-TCTACA-TTGAA---TT---GT-ATAAAAT---GA-----A--T-ATCCTAAA-CA-GA-A---A-AAATCNAAATGC-ATGTATTGCTAATTAAAT-TTGCTG----GGTTTTTTTTTCTCGTTGTTTGTTTGNNTTTTTTTTTTCCGGTTATAATAAACAATTTATTGCCCTGCTNGGAGGGAGACATGA-------AGCTTTGTCCAACCCAGTAATATCATGT-CCC-CGGGCGTTGCCCTCGGGGGACATGATA-TTACTGGGTTGGACAAAT-CTT--CATGTCTCCCTC-CTAGCAGGGCAATAAATGTA
Reference ( family-600 ) : ATTATACCT-CAAG-GGATAG-ACACG-ACGA-TTATTG-AAAT-ACGATTGG---T-TGAACAGA---TCAC-G-TGA--TC-G--GGGCGAC-AAAACTTCATGTACCCCTCC--CTC-G-GTGTGCCTCGGGACG-TCGTGTACTGGCATCCCTC-G---GGGAGCCT--CGC-GT--TTTTTCTTACGAGA---GATA-TTTTCAAGCTGTTA-ACT------GTTA----TTGTTACTATNT---T-GTTAT-T-GTT-T----GACAG-TTGTTGA--TAGGTGAA---A-TTAC-AT--ACAATTTA-TA-A-TCTACA-TTGAA---TT---GT-ATAAAAT---GA-----A--T-ATCCTAAA-CA-GA-A---A-AAATCNAAATGC-ATGTATTGT--ATTAAAT-TTGCTG----GGTTTTTTTTTCTCGTTGTCTGTTTGGGTTTTTTTT---CGGTTATAATANACAATTTATTGCCCTGCTAGAAGGGAGACATGA-------AGCTTTGTCCAACCCAGTAATATCATGT-CCCGCGGGCGTTGCCCTCGGGGGACATGATA-TTACTGGGTTGGACAAA--CTT--CATGTCTCCCTT-CTAGCAGGGCAATAAATGTA
gi|10 : TTATACCT-CAAG-GGATAGGACACGCACGA-TTACTG-AAAT-ACGATTGGAAGT-TGAACAGAGATCCACTG-TGAAATC-G--CGGCGAC-AAAACTTCATGTCCGCATCC--TTCCG-GAGTGCCTCGGGACGTTCGT-TACTGGCATCTCTC-GCACAGGAGCCT--CGCTATTGTTTTTCTTAGGAGA---GATA-TTTCCAAGCTCTT
gi|11 : CTACTGGAAGGGAGACATGAAAGCGACAGCTTTGTCC-GCCCAGTAATATCACGTCCCCTCGGGCGTTGCCCTCGAGGA--ATGATA-TCACT-GGTTGTACAG----TTAACATGTC---------------GCAATAAATGTA
gi|13 : GTGAA---AATTAC-AT--ACAATTTA-TA-AATCTACA-TTGAA---TT---GT-ATAAAAT---GATTTAAACTT-ATCTTAAG-CACGA-A---A-AAAATTAGATAC--------------TAA-T-TTGCTGTTTTGGTCTTTTTTt
gi|16 : TATACCTTCAATTGGATAG-ACACG-ACGA-TT-TTGAAAATGACGATAGG---T-TGAGCAGA---T-AC-GTTTA--TCTG--GGGCGAC-AAAAc
gi|18 : A----TCGCTA-TATTT---C-GTTATCT-GTT------GACAG-CTG-TGACCCAGGTGAA---A-TTACAATAAACAACTGATTC-A-TCTACA-TTGA
gi|19 : --CACATCTCCCTT-CTAGCAGGGCAATAAATGTA
gi|2 : CGCTGACCTAGGAGGATATGACT-TTTGTAGGCGGAATAAAT-CTT--CATATCTTCCTCACT-GCCGTGCAATAAATGTAt
gi|2 : ATAAAT-CTT--CATATCTTCCTA-CT-GCCGTGCAATAAATGTAtatcttaataagatattatacatttattgcacggcagtaggaagatatgaagatttattgtatataacgaccttaagatagtctgaaatctttcgacatccagatacatgtcttcagtctaaatgtaacatggcggcttgatgacccattagactgaacattatgaacaagtttcatatactttttgctgctatcttctcccagacctctttttgataaagttggagaccgctgaattttgtactttgtcttttttcaacttcgttcgtcaatattgctacttatctctgaagcggaaaaactcgtacacgttccttgccatttccaaaacctttcagactatataagcacgaactattcgctagttacatgtaagaacatcaaaattaaatgcgtttacaatatagcgagaacagccgaacacctgttttaaatgttttctatggaaacttgcaacattcatatttttatacaacttcacatgacagcagcctagctgtgtgtatatttttgttaaggatatcaaacattgcagacaacacctctagtaccttttgatcccttttttcattttccaaactgagttatctcattttagcatttattacaatatgttaagcatggaacttacgtgtgatttttcttaagagttttatatctcaagatatttttgtgaatcttacgattgtcacaagtcagaacttaagacaattt
gi|20 : cgctgacctaggaggatatgacttttgtaggcggaataaatcttcatatcttcctcactgccgtgcaataaatgtatatcttaataagatattaCTCCCTT-CTAGCAGGGCAATAAATGTAtgtatataacgaccttaagatagtctgaaatctttcgacatccagatacatgtcttcagtctaaatgtaacatggcggcttgatgacccattagactgaacattatgaacaagtttcatatactttttgctgctatcttctcccagacctctttttgataaagttggagaccgctgaattttgtactttgtcttttttcaacttcgttcgtcaatattgctacttatctctgaagcggaaaaactcgtacacgttccttgccatttccaaaacctttcagactatataagcacgaactattcgctagttacatgtaagaacatcaaaattaaatgcgtttacaatatagcgagaacagccgaacacctgttttaaatgttttctatggaaacttgcaacattcatatttttatacaacttcacatgacagcagcctagctgtgtgtatatttttgttaaggatatcaaacattgcagacaacacctctagtaccttttgatcccttttttcattttccaaactgagttatctcattttagcatttattacaatatgttaagcatggaacttacgtgtgatttttcttaagagttttatatctcaagatatttttgtgaatcttacgattgtcacaagtcagaacttaagacaattt
gi|3 : ATTATACCT-CAAG-GGATAG-ACACG-ACGA-TTACTG-AAAT-ACGATTGG---T-TGAACAGA---TCAC-G-TGA--TC-A--GGGCGAC-AAAACTTCATGTACCCCTCC--CTC-G-GAGTGCCTCGGGACG-TCGTGTACTG-CATCCCTG-G---GGGAGTCT--CGC-GT--TTTTTCTTACGAGA---GATA-TTTTCAAGCTGTTA-ACT------GTTA----TTGTTGATATCT---T-GTTAT-T-GTT-T----GACAG-CTGTTGA--CAGGTGAA---A-TTGC-AT--ACAATTCA-TA-A-TCTACA-TTAAA---TT---GTAATAAAAT---GA-----A--T-ATCCTAAA-CA-GA-A---A-AAATCGAAATGC-ATGTATTGCTAATTAAAT-TTGCTG----GGTTTTTTTTTTTCGTTGT-TGTTTGTTTTTTTTTTTTCCGG-TATAATAAACAATTTATTGCCCTGCTTGGAGGGAGACATGA-------AGCTTTGTCCAACCCAGTAATATCATGT-CCCACGGGCGTTGCCCTCGGGGGACATGATA-TTACAGAGTTGGACAAAG-CTT--CATGTCTCCCTC-CTAGCAGGGCAATAAATGTAta
gi|5 : TTATACCT-CAAG-G-ATAG-ACACG-ACGA-TTATTG-AAAT-ACGATTGG---T-TGAACAGA---TCAC-G-TGA--TC-GGAGGGCAACAAAAACTTCATGTACCCCTCCCTCTC-GTGTGTGCCCTCGGACG-TCGTGTACTGCCATCCCTCGG---GGGACCCT--CGC-GT--TTTTTCTTACAAGA---GTTGTTTTTCAAGCTGTTA-CTT------GTTA----TTGTTACTATAT---TGGTTA--T-GTTGC----AACAGTTTGTTGA--TAAGAGGAAACA-TTAC-AT--ACAATTTA-TACA-TTTACACTTGAATGGTT---AT-ACAAAATTTAGA-----C--TAATTCTAA---A-AA-A---A-AAATCAAAAAACTCTGAAATAT--A-TAAAT-TTGT------GGTTTCTATTTCTTGTT
gi|6 : tATTCTACCT-CAAG-GGATAG-ACA-G-ACGAATTATTG-AAAT-ACGATTGG---TCTGAACAGA---TCAC-G-TGA--TC-G--GGGCAAC-AAA--TTCATGTAC---TCC--CTC-G-GTGTGCATCGGGACG-TCGTGTACTGGCATCCCTC-G---GG-AGCCTGCCGT-TT--TTTTTCTTACAAGA---GTTG-TTTTCAAGCTGTTTTACT------GTTA----TTGTTACTATAT---T-GTTAT-T-GTT-T----GACAG-TTGTTGA--TACGAGAA---A-TTAC-AT--ACAATTTA-TA-A-TTT-CA-TTGAA---TG---GT-ATAAATT---AA-----C--T-AATTTAAA--A-AA-A---A-AAATCTAAAT------TAT---------AAT-TTGGT-----GGTTTTATTTTCTTGTTG
gi|7 : GGCGAC-AAAACTTCATGTACCCCTCC--CTC-G-G----------GACG-TCGTGTACTG-CATCCCCC-G---GGGAGCAT--CGC-GT--TTTTTCTTACGAGATCAGATA-TTTTCAAGCTGTTA-ACT------GTTA----TTGTTGCTATCT---T-GTTAT-T-GTT-T----GACAG-CTGTTGA--CAGGTGAA---A-TTAA-AT--ACAATTTA-TA-A-TCTACA-TTGAA---TT---GT-ATAAAAT---GAAT---A--T-ATCCTAAA-CA-TA-A---ACAAATCCAAATGC-ATGTATTGCTAATTAAAT-Tct
gi|8 : GAA---TTTTGAT-ATAAAAT---GA-----A--T-ATCCTAAAACA-GA-ATAAA-AAATCCAAATGC-ATGTATTGCTAATTAAAT-TTGCTG----GGTTTTTTTT---CGTTGTTTGTTTGGGTTTTTTTT---CGGTTATAATAAACAATTTATTGCCCTGCTAGGAGGGAGACATGA-------AG-TTTGTCCAA-CCAGT-ATATCAT------------GTTGTCCTCGGTGGTCATGATAGTTACTGGGTTGGACAAACGCTT--CATGTCTCCC
gi|9 : ATA-TTTTCAAATTGTGA-ACTTATTCAGTTACTATTTGTTACTGTTTGTTT-GTTAT-TTGTT-TCTTTAACAG-TTGTTGA--TCATTGGA---A-TTAC-AT--ACAATTTA-CA-A-TCCGTA-TTCAA---TT---GC-ATGAAAT----A-----A--G-GCTGTAAA--A-GATA---A-ACACTTTGATGC----TACTG----TTAAACATTGCT-----GATCTTTTTCTCT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TTGAATCAAATGTTTCGAATTTTCTATCTGGGTGAAACTTTTAAATAATTTCCAATATGACACATCTAAGACATAATTGAAGTTATTGTTGCATATAAAATATAAAAAAACTAAAAAGCTCCGGAGCCCGAAACCCTTAGTGGAAGGATACTGATGTTTTGTAGGCGAGAATAAAAACAGTGTTCATCCCATGGCTTTACCTCACTGCCGTGCATAAATGTTACTACACCAGTCTTAAAAGATGAGAGACAATATGAACTATTACATTACCTTGCACGCAGTCAAAGTGAAAGAGATATGAAGATTTATTGTTCCCCCCAGTCATATGAAACGACCTAAGATAGTTCTAAGAAAATATCCTTGTCGTAAGCCCAGTTCTCAGATACATACCTGGTCATATCAAGTCTAAGGCATGTCAAACATGGCGTGCTTGATAGACCCAATTTAAGAACTGAATCGATCCTTATGAACAAGTTCTCATAATACTTATTATGCTAATTGCTAAGTTCTGCCCCAACCTCTGTGATAATAGTGTGACGCGTGCTCTGAGAAGTTCTGTCACTTGTCTTATTATTTCAAACCACTATCGTTCGGTCAATATTGCCTACTTATCTCTGAAAGCGCGAAAACAAAATATCTGCGTACCCATAAGTTCCTTGCTATTTCCAAATATTCGCCTTACAAATAGTGAACTAATATAAAGCACGAGAACTATTCGATCGTAGTACATTTGTAAGAATCATCAAAATTAATTAATGACGTTACATTATAGCGGAAGAAACAGCCGAACACCTGTTTTACTGTTTCTACTGAAGAAACTTGTCAGAACAATATCAGGATGGCCCAATTTTTAATTAGCAACATTCCACAATGACAGCAGTTATCCTAGCTGTGTGGGTATGATTGTTTGTGTAAAGAGTATAATCGAATATAACACATTGACAGACAGGCAGACTACCCTTCTAGTACCATTTTGATCCCTATTTTTCATTTCTCCAAAACTGAGTTATCCTCACTTTTTAAGCATCTTATTACAATATGGTTAAGCATGGAGATCTACGGGTGATTTATATCTTAAGATGTGGTTTATCATCCCTCAAGATAATTTTATTTCCCCTGTGAATCTTACGATATTGTCACCCAACAGTCAGAACTTTAGAAGGGTAACATTTA
Unaligned ( gi|4 ): CGGACTAAGATCTGTCTTAAGACCAAAATTTGTCATAAGCTTGCAACATTAATAATTTTATGCAACTTTTTATGACAACAGCCTAGCTACATATATAATTTTCTTGAAATAGAAGAGAAAAAAAATATTTAGGGATATCCGTATCCTTGGACTACTAGTATATAGAACATTTCATATCCTTTTGATCCTTTTTTTAACTCCCGAAACTGAGTTTTCTTAATTTTAGTATTTGCTACAATATCCCAGAAGAAAATGTTAAGCATAAAACTTATCGTAAGATTTATCTTAAGATTTTTATAACTTAAGATAGTTTTGTGAAACAGCAGTGGCAATCTTTATGATTGTCATAAGTTAGATCTTAAGATAAT
Unaligned ( gi|12 ): AAACATTAAAAAAAAAAAGATTTTCTAGGCGGAAGAAATCTGCATATCCCCCTCACTGCGTGCAATAGAATGTTATGTGTCTATTAAGTTTATATCAAAATCCAATATTGTAC
Unaligned ( gi|14 ): TGAATAAAGTTGTAATTTCTATCTTGAAACTTTATATTCATATGCCATTCTGCATAATTGAATTATTGTTGCAAAATAAATAA
Unaligned ( gi|15 ): GAAGTAGAAGGGTTGTGTAAACTATAAAATATCTTCATATCTTCCTCACTGCCGTGCAATAATAAAATCATTAATTAAATA
Unaligned ( gi|17 ): AGAATTTTATAACTTAAGATAGTTTTGTGAAACAGCAGTGGCAATCTTATGATTGTCATAAGTTAGATCTTAAGATAAT
Alignments
lowQualScore : 111 111 11 1111 11 1 111 11 11 111 222222 1111 11111 222222 111 111 111 222222222222222 111 111 333333333333333333333 22222 1 1 22 4444444 3333333 11 111111 1
lowQualScore : 8 8 8 8 8 0 8 8 444 8 444 8 8 11 2222 6 5 11 8 8 8 8 5 8 444 11 8 11 444 6 8 333333 4444 2 1 11111 6 6 222222 6 99 000 5 5 77 5 5 5 0 5 000 000 5 888888888888888 333 888 5 000 5 1 666666666666666666666 5 55555 0 2 22 2 22 1 3333333 6 7 6 7 3333333 0 0 0 00 8 3 0 1 999999 77 77 1 3 2
lowQualScore : . . . . . . . . ... . ... . . .. .... . . .. . . . . . . ... .. . .. ... . . ...... .... . . ..... . . ...... . .. ... . . .. . . . . . ... ... . ............... ... ... . ... . . ..................... . ..... . . .. . .. . ....... . . . . ....... . . . .. . . . . ...... .. .. . . .
lowQualScore : 0 0 0 0 0 8 0 0 000 0 000 0 0 00 2222 7 0 00 0 0 8 0 0 0 000 00 0 00 000 7 0 000000 2222 5 0 88888 7 7 555555 7 22 000 7 7 99 7 7 7 1 7 000 000 7 444444444444444 777 333 7 000 7 0 333333333333333333333 7 00000 8 3 00 3 00 0 3333333 7 3 7 3 3333333 8 2 2 00 0 2 6 4 000000 99 44 3 0 5
consensus : ATTATACCT-CAAG-GGATAG-ACACG-ACGA-TTATTG-AAAT-ACGATTGG---T-TGAACAGA---TCAC-G-TGA--TC-G--GGGCGAC-AAAACTTCATGTACCCCTCC--CTC-G-GNGTGCCTCGGGACG-TCGTGTACTGGCATCCCTC-G---GGGAGCCT--CGC-GT--TTTTTCTTACGAGA---GATA-TTTTCAAGCTGTTA-ACT------GTTA----TTGTTACTATNT---T-GTTAT-T-GTT-T----GACAG-CTGTTGA--CAGGTGAA---A-TTAC-AT--ACAATTTA-TA-A-TCTACA-TTGAA---TT---GT-ATAAAAT---GA-----A--T-ATCCTAAA-CA--GA-A---A-AAATCNAAATGCATGTATTGCT--AAT---TAAAT-TTGCTG----GGTTTTTTTTTCTCGTTGCTTGTTTGNNTTTTTTTTCTCCGG-TATAATAAACAATTTATTGCCCTGCTNGGAGGGAGACATGAA-------GCTTTGTCCGACCCAGTAATATCACGTCCC-C--GGGCGTTGCCCTCGGGGGACATGATA-TTACTGGGTTGGACAA---AT-CTT--CATGTCTCCCTC-CTAGCAGGGCAATAAATGTA
Reference ( family-600 ) : ATTATACCT-CAAG-GGATAG-ACACG-ACGA-TTATTG-AAAT-ACGATTGG---T-TGAACAGA---TCAC-G-TGA--TC-G--GGGCGAC-AAAACTTCATGTACCCCTCC--CTC-G-GNGTGCCTCGGGACG-TCGTGTACTGGCATCCCTC-G---GGGAGCCT--CGC-GT--TTTTTCTTACGAGA---GATA-TTTTCAAGCTGTTA-ACT------GTTA----TTGTTACTATNT---T-GTTAT-T-GTT-T----GACAG-CTGTTGA--CAGGTGAA---A-TTAC-AT--ACAATTTA-TA-A-TCTACA-TTGAA---TT---GT-ATAAAAT---GA-----A--T-ATCCTAAA-CA--GA-A---A-AAATCNAAATGCATGTATTGCT--AAT---TAAAT-TTGCTG----GGTTTTTTTTTCTCGTTGTTTGTTTGNNTTTTTTTTTTCCGGTTATAATAAACAATTTATTGCCCTGCTNGGAGGGAGACATGAA-------GCTTTGTCCAACCCAGTAATATCATGTCCC-C--GGGCGTTGCCCTCGGGGGACATGATA-TTACTGGGTTGGACAA---AT-CTT--CATGTCTCCCTC-CTAGCAGGGCAATAAATGTA
gi|1 : ATA-TGACTGGGGGGAACAATAAAT-CTT--CATATCTCTTTC-
gi|10 : ttgaatcaaatgtttcgaattttctatctgggtgaaacttttaaataatttccaatatgacacatctaagacataattgaagttattgttgcatataaaatataaaaaaactaaaaagctccggagcccgaaacccttagtggaaggatactgatgttttgtaggcgagaataaaaacagtgttcatcccatggctttacctcactgccgtgcataaatgttactacaccagtcttaaaagatgagagacaatatgaactattacattaccttgcacgcagtcaaagtTTATACCT-CAAG-GGATAGGACACGCACGA-TTACTG-AAAT-ACGATTGGAAGT-TGAACAGAGATCCACTG-TGAAATC-G--CGGCGAC-AAAACTTCATGTCCGCATCC--TTCCG-GAGTGCCTCGGGACGTTCGT-TACTGGCATCTCTC-GCACAGGAGCCT--CGCTATTGTTTTTCTTAGGAGA---GATA-TTTCCAAGCTCTTgaaacgacctaagatagttctaagaaaatatccttgtcgtaagcccagttctcagatacatacctggtcatatcaagtctaaggcatgtcaaacatggcgtgcttgatagacccaatttaagaactgaatcgatccttatgaacaagttctcataatacttattatgctaattgctaagttctgccccaacctctgtgataatagtgtgacgcgtgctctgagaagttctgtcacttgtcttattatttcaaaccactatcgttcggtcaatattgcctacttatctctgaaagcgcgaaaacaaaatatctgcgtacccataagttccttgctatttccaaatattcgccttacaaatagtgaactaatataaagcacgagaactattcgatcgtagtacatttgtaagaatcatcaaaattaattaatgacgttacattatagcggaagaaacagccgaacacctgttttactgtttctactgaagaaacttgtcagaacaatatcaggatggcccaatttttaattagcaacattccacaatgacagcagttatcctagctgtgtgggtatgattgtttgtgtaaagagtataatcgaatataacacattgacagacaggcagactacccttctagtaccattttgatccctatttttcatttctccaaaactgagttatcctcactttttaagcatcttattacaatatggttaagcatggagatctacgggtgatttatatcttaagatgtggtttatcatccctcaagataattttatttcccctgtgaatcttacgatattgtcacccaacagtcagaactttagaagggtaacattta
gi|11 : CTACTGGAAGGGAGACATGAAAGCGACAGCTTTGTCCG-CCCAGTAATATCACGTCCC-CTCGGGCGTTGCCCTCGAGGA--ATGATA-TCACT-GGTTGTACAG-------TTAACATGTC---------------GCAATAAATGTA
gi|13 : GTGAA---AATTAC-AT--ACAATTTA-TA-AATCTACA-TTGAA---TT---GT-ATAAAAT---GATTTAAACTT-ATCTTAAG-CACGAA-A---A-AAATTAGA----------TACT----------AAT-TTGCTGTTTTGGTCTTTTTTt
gi|16 : TATACCTTCAATTGGATAG-ACACG-ACGA-TT-TTGAAAATGACGATAGG---T-TGAGCAGA---T-AC-GTTTA--TCTG--GGGCGAC-AAAAc
gi|18 : A----TCGCTA-TATTT---C-GTTATCT-GTT------GACAG-CTG-TGACCCAGGTGAA---A-TTACAATAAACAACTGATTC-A-TCTACA-TTGA
gi|19 : --CACATCTCCCTT-CTAGCAGGGCAATAAATGTA
gi|2 : CGCTGACCTAGGAGGATATGACT-TTTGTAGGCGGAATAA---AT-CTT--CATATCTTCCTCACT-GCCGTGCAATAAATGTAt
gi|2 : ATAA---AT-CTT--CATATCTTCCTA-CT-GCCGTGCAATAAATGTAtatcttaataagatattatacatttattgcacggcagtaggaagatatgaagatttattgtatataacgaccttaagatagtctgaaatctttcgacatccagatacatgtcttcagtctaaatgtaacatggcggcttgatgacccattagactgaacattatgaacaagtttcatatactttttgctgctatcttctcccagacctctttttgataaagttggagaccgctgaattttgtactttgtcttttttcaacttcgttcgtcaatattgctacttatctctgaagcggaaaaactcgtacacgttccttgccatttccaaaacctttcagactatataagcacgaactattcgctagttacatgtaagaacatcaaaattaaatgcgtttacaatatagcgagaacagccgaacacctgttttaaatgttttctatggaaacttgcaacattcatatttttatacaacttcacatgacagcagcctagctgtgtgtatatttttgttaaggatatcaaacattgcagacaacacctctagtaccttttgatcccttttttcattttccaaactgagttatctcattttagcatttattacaatatgttaagcatggaacttacgtgtgatttttcttaagagttttatatctcaagatatttttgtgaatcttacgattgtcacaagtcagaacttaagacaattt
gi|20 : cgctgacctaggaggatatgacttttgtaggcggaataaatcttcatatcttcctcactgccgtgcaataaatgtatatcttaataagatattaCTCCCTT-CTAGCAGGGCAATAAATGTAtgtatataacgaccttaagatagtctgaaatctttcgacatccagatacatgtcttcagtctaaatgtaacatggcggcttgatgacccattagactgaacattatgaacaagtttcatatactttttgctgctatcttctcccagacctctttttgataaagttggagaccgctgaattttgtactttgtcttttttcaacttcgttcgtcaatattgctacttatctctgaagcggaaaaactcgtacacgttccttgccatttccaaaacctttcagactatataagcacgaactattcgctagttacatgtaagaacatcaaaattaaatgcgtttacaatatagcgagaacagccgaacacctgttttaaatgttttctatggaaacttgcaacattcatatttttatacaacttcacatgacagcagcctagctgtgtgtatatttttgttaaggatatcaaacattgcagacaacacctctagtaccttttgatcccttttttcattttccaaactgagttatctcattttagcatttattacaatatgttaagcatggaacttacgtgtgatttttcttaagagttttatatctcaagatatttttgtgaatcttacgattgtcacaagtcagaacttaagacaattt
gi|3 : ATTATACCT-CAAG-GGATAG-ACACG-ACGA-TTACTG-AAAT-ACGATTGG---T-TGAACAGA---TCAC-G-TGA--TC-A--GGGCGAC-AAAACTTCATGTACCCCTCC--CTC-G-GAGTGCCTCGGGACG-TCGTGTACTG-CATCCCTG-G---GGGAGTCT--CGC-GT--TTTTTCTTACGAGA---GATA-TTTTCAAGCTGTTA-ACT------GTTA----TTGTTGATATCT---T-GTTAT-T-GTT-T----GACAG-CTGTTGA--CAGGTGAA---A-TTGC-AT--ACAATTCA-TA-A-TCTACA-TTAAA---TT---GTAATAAAAT---GA-----A--T-ATCCTAAA-CA--GA-A---A-AAATCGAAATGCATGTATTGCT--AAT---TAAAT-TTGCTG----GGTTTTTTTTTTTCGTTG-TTGTTTGTTTTTTTTTTTTCCGG-TATAATAAACAATTTATTGCCCTGCTTGGAGGGAGACATGAA-------GCTTTGTCCAACCCAGTAATATCATGTCCCAC--GGGCGTTGCCCTCGGGGGACATGATA-TTACAGAGTTGGACAA---AG-CTT--CATGTCTCCCTC-CTAGCAGGGCAATAAATGTAta
gi|5 : TTATACCT-CAAG-G-ATAG-ACACG-ACGA-TTATTG-AAAT-ACGATTGG---T-TGAACAGA---TCAC-G-TGA--TC-GGAGGGCAACAAAAACTTCATGTACCCCTCCCTCTC-GTGTGTGCCCTCGGACG-TCGTGTACTGCCATCCCTCGG---GGGACCCT--CGC-GT--TTTTTCTTACAAGA---GTTGTTTTTCAAGCTGTTA-CTT------GTTA----TTGTTACTATAT---TGGTTA--T-GTTGC----AACAGTTTGTTGA--TAAGAGGAAACA-TTAC-AT--ACAATTTA-TACA-TTTACACTTGAATGGTT---AT-ACAAAATTTAGA-----C--TAATTCTAA---A--AA-A---A-AAATCAAAA---A---ACT-CTGAAATATATAAAT-TTGT------GGTTTCTATTTCTTGTT
gi|6 : tATTCTACCT-CAAG-GGATAG-ACA-G-ACGAATTATTG-AAAT-ACGATTGG---TCTGAACAGA---TCAC-G-TGA--TC-G--GGGCAAC-AAA--TTCATGTAC---TCC--CTC-G-GTGTGCATCGGGACG-TCGTGTACTGGCATCCCTC-G---GG-AGCCTGCCGT-TT--TTTTTCTTACAAGA---GTTG-TTTTCAAGCTGTTTTACT------GTTA----TTGTTACTATAT---T-GTTAT-T-GTT-T----GACAG-TTGTTGA--TACGAGAA---A-TTAC-AT--ACAATTTA-TA-A-TTT-CA-TTGAA---TG---GT-ATAAATT---AA-----C--T-AATTTAAA--A--AA-A---A-AAATCTAAAT-----TAT--------------AAT-TTGGT-----GGTTTTATTTTCTTGTTGCT
gi|7 : GGCGAC-AAAACTTCATGTACCCCTCC--CTC-G-G----------GACG-TCGTGTACTG-CATCCCCC-G---GGGAGCAT--CGC-GT--TTTTTCTTACGAGATCAGATA-TTTTCAAGCTGTTA-ACT------GTTA----TTGTTGCTATCT---T-GTTAT-T-GTT-T----GACAG-CTGTTGA--CAGGTGAA---A-TTAA-AT--ACAATTTA-TA-A-TCTACA-TTGAA---TT---GT-ATAAAAT---GAAT---A--T-ATCCTAAA-CA--TA-A---ACAAATCCAAATGCATGTATTGCT--AAT---TAAAT-T
gi|8 : GAA---TTTTGAT-ATAAAAT---GA-----A--T-ATCCTAAAACA--GA-ATAAA-AAATCCAAATGCATGTATTGCT--AAT---TAAAT-TTGCTG----GGTTTTTTTT---CGTTGTTTGTTTGGGTTTTTTTT---CGGTTATAATAAACAATTTATTGCCCTGCTAGGAGGGAGACATGAA-------G-TTTGTCCAACC-AGTA-TATCATGT-------------TGTCCTCGGTGGTCATGATAGTTACTGGGTTGGACAA---ACGCTT--CATGTCTCCC
gi|9 : ATA-TTTTCAAATTGTGA-ACTTATTCAGTTACTATTTGTTACTGTTTGTTT-GTTAT-TTGTT-TCTTTAACAG-TTGTTGA--TCATTGGA---A-TTAC-AT--ACAATTTA-CA-A-TCCGTA-TTCAA---TT---GC-ATGAAAT----A-----A--G-GCTGTAAA--A--GATA---A-ACACTTTGATGC---TACTG------T---TAAACATTGCT-----GATCTTTTTCTCT
gi|9 : acTCTTTTTCTCTG----TAATAAACAATTCATTGCCgtaataaacaattcattgcc
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): CGGACTAAGATCTGTCTTAAGACCAAAATTTGTCATAAGCTTGCAACATTAATAATTTTATGCAACTTTTTATGACAACAGCCTAGCTACATATATAATTTTCTTGAAATAGAAGAGAAAAAAAATATTTAGGGATATCCGTATCCTTGGACTACTAGTATATAGAACATTTCATATCCTTTTGATCCTTTTTTTAACTCCCGAAACTGAGTTTTCTTAATTTTAGTATTTGCTACAATATCCCAGAAGAAAATGTTAAGCATAAAACTTATCGTAAGATTTATCTTAAGATTTTTATAACTTAAGATAGTTTTGTGAAACAGCAGTGGCAATCTTTATGATTGTCATAAGTTAGATCTTAAGATAAT
Unaligned ( gi|12 ): AAACATTAAAAAAAAAAAGATTTTCTAGGCGGAAGAAATCTGCATATCCCCCTCACTGCGTGCAATAGAATGTTATGTGTCTATTAAGTTTATATCAAAATCCAATATTGTAC
Unaligned ( gi|14 ): TGAATAAAGTTGTAATTTCTATCTTGAAACTTTATATTCATATGCCATTCTGCATAATTGAATTATTGTTGCAAAATAAATAA
Unaligned ( gi|15 ): GAAGTAGAAGGGTTGTGTAAACTATAAAATATCTTCATATCTTCCTCACTGCCGTGCAATAATAAAATCATTAATTAAATA
Unaligned ( gi|17 ): AGAATTTTATAACTTAAGATAGTTTTGTGAAACAGCAGTGGCAATCTTATGATTGTCATAAGTTAGATCTTAAGATAAT
Alignments
lowQualScore : 111 111 11 1111 11 1 111 11 11 111 222222 1111 11111 222222 111 111 111 222222222222222 111 111 333333333333333333333 22222 1 222 2 4444444 111 33333333 11 111111 1
lowQualScore : 8 8 8 8 8 0 8 8 444 8 444 8 8 11 2222 6 5 11 8 8 8 8 5 8 444 11 8 11 444 6 8 333333 4444 2 1 11111 6 6 222222 6 99 000 5 5 77 5 5 5 0 5 000 000 5 888888888888888 333 888 5 000 5 1 666666666666666666666 5 55555 0 2 22 000 0 1 3333333 6 444 7 66666666 0 0 00 8 3 0 1 999999 77 77 1 3 2
lowQualScore : . . . . . . . . ... . ... . . .. .... . . .. . . . . . . ... .. . .. ... . . ...... .... . . ..... . . ...... . .. ... . . .. . . . . . ... ... . ............... ... ... . ... . . ..................... . ..... . . .. ... . . ....... . ... . ........ . . .. . . . . ...... .. .. . . .
lowQualScore : 0 0 0 0 0 8 0 0 000 0 000 0 0 00 2222 7 0 00 0 0 8 0 0 0 000 00 0 00 000 7 0 000000 2222 5 0 88888 7 7 555555 7 22 000 7 7 99 7 7 7 1 7 000 000 7 444444444444444 777 333 7 000 7 0 333333333333333333333 7 00000 8 0 00 555 0 0 3333333 7 777 3 00000000 2 2 00 0 2 6 4 000000 99 44 3 0 5
consensus : ATTATACCT-CAAG-GGATAG-ACACG-ACGA-TTATTG-AAAT-ACGATTGG---T-TGAACAGA---TCAC-G-TGA--TC-G--GGGCGAC-AAAACTTCATGTACCCCTCC--CTC-G-GNGTGCCTCGGGACG-TCGTGTACTGGCATCCCTC-G---GGGAGCCT--CGC-GT--TTTTTCTTACGAGA---GATA-TTTTCAAGCTGTTA-ACT------GTTA----TTGTTACTATNT---T-GTTAT-T-GTT-T----GACAG-CTGTTGAC--AGGTGAA---A-TTAC-AT--ACAATTTA-TA-A-TCTACA-TTGAA---TT---GT-ATAAAAT---GA-----A--T-ATCCTAAA-CA--GA-A---A-AAATCNAAATGCATGTATTGCT--AAT---TAAAT-TTGCTG----GGTTTTTTTTTCTCGTTGCTTGTTTGNNTTTTTTTTCTCCGGTTATAATAAACAATTTATTGCCCTGCTNGGAGGGAGACATGAA-------GCTTTGTCCGACCCAGTAATATCACGTCCC--CGGGCGTTGCCCTCGGGGGACATGATA-TTACTGGGTTGGACAA---AT-CTT--CATGTCTCCCTC-CTAGCAGGGCAATAAATGTA
Reference ( family-600 ) : ATTATACCT-CAAG-GGATAG-ACACG-ACGA-TTATTG-AAAT-ACGATTGG---T-TGAACAGA---TCAC-G-TGA--TC-G--GGGCGAC-AAAACTTCATGTACCCCTCC--CTC-G-GNGTGCCTCGGGACG-TCGTGTACTGGCATCCCTC-G---GGGAGCCT--CGC-GT--TTTTTCTTACGAGA---GATA-TTTTCAAGCTGTTA-ACT------GTTA----TTGTTACTATNT---T-GTTAT-T-GTT-T----GACAG-CTGTTGAC--AGGTGAA---A-TTAC-AT--ACAATTTA-TA-A-TCTACA-TTGAA---TT---GT-ATAAAAT---GA-----A--T-ATCCTAAA-CA--GA-A---A-AAATCNAAATGCATGTATTGCT--AAT---TAAAT-TTGCTG----GGTTTTTTTTTCTCGTTGCTTGTTTGNNTTTTTTTTCTCCGGT-ATAATAAACAATTTATTGCCCTGCTNGGAGGGAGACATGAA-------GCTTTGTCCGACCCAGTAATATCACGTCCC--CGGGCGTTGCCCTCGGGGGACATGATA-TTACTGGGTTGGACAA---AT-CTT--CATGTCTCCCTC-CTAGCAGGGCAATAAATGTA
gi|1 : ATA-TGACTGGGGGGAACAATAAAT-CTT--CATATCTCTTTC-
gi|10 : ttgaatcaaatgtttcgaattttctatctgggtgaaacttttaaataatttccaatatgacacatctaagacataattgaagttattgttgcatataaaatataaaaaaactaaaaagctccggagcccgaaacccttagtggaaggatactgatgttttgtaggcgagaataaaaacagtgttcatcccatggctttacctcactgccgtgcataaatgttactacaccagtcttaaaagatgagagacaatatgaactattacattaccttgcacgcagtcaaagtTTATACCT-CAAG-GGATAGGACACGCACGA-TTACTG-AAAT-ACGATTGGAAGT-TGAACAGAGATCCACTG-TGAAATC-G--CGGCGAC-AAAACTTCATGTCCGCATCC--TTCCG-GAGTGCCTCGGGACGTTCGT-TACTGGCATCTCTC-GCACAGGAGCCT--CGCTATTGTTTTTCTTAGGAGA---GATA-TTTCCAAGCTCTTgaaacgacctaagatagttctaagaaaatatccttgtcgtaagcccagttctcagatacatacctggtcatatcaagtctaaggcatgtcaaacatggcgtgcttgatagacccaatttaagaactgaatcgatccttatgaacaagttctcataatacttattatgctaattgctaagttctgccccaacctctgtgataatagtgtgacgcgtgctctgagaagttctgtcacttgtcttattatttcaaaccactatcgttcggtcaatattgcctacttatctctgaaagcgcgaaaacaaaatatctgcgtacccataagttccttgctatttccaaatattcgccttacaaatagtgaactaatataaagcacgagaactattcgatcgtagtacatttgtaagaatcatcaaaattaattaatgacgttacattatagcggaagaaacagccgaacacctgttttactgtttctactgaagaaacttgtcagaacaatatcaggatggcccaatttttaattagcaacattccacaatgacagcagttatcctagctgtgtgggtatgattgtttgtgtaaagagtataatcgaatataacacattgacagacaggcagactacccttctagtaccattttgatccctatttttcatttctccaaaactgagttatcctcactttttaagcatcttattacaatatggttaagcatggagatctacgggtgatttatatcttaagatgtggtttatcatccctcaagataattttatttcccctgtgaatcttacgatattgtcacccaacagtcagaactttagaagggtaacattta
gi|11 : CTACTGGAAGGGAGACATGAAAGCGACAGCTTTGTCCG-CCCAGTAATATCACGTCCCCTCGGGCGTTGCCCTCGAGGA--ATGATA-TCACT-GGTTGTACAG-------TTAACATGTC---------------GCAATAAATGTA
gi|13 : GTGAA---AATTAC-AT--ACAATTTA-TA-AATCTACA-TTGAA---TT---GT-ATAAAAT---GATTTAAACTT-ATCTTAAG-CACGAA-A---A-AAATTAGA----------TACT----------AAT-TTGCTGTTTTGGTCTTTTTTt
gi|16 : TATACCTTCAATTGGATAG-ACACG-ACGA-TT-TTGAAAATGACGATAGG---T-TGAGCAGA---T-AC-GTTTA--TCTG--GGGCGAC-AAAAc
gi|18 : A----TCGCTA-TATTT---C-GTTATCT-GTT------GACAG-CTGT-GACCCAGGTGAA---A-TTACAATAAACAACTGATTC-A-TCTACA-TTGA
gi|19 : --CACATCTCCCTT-CTAGCAGGGCAATAAATGTA
gi|2 : CGCTGACCTAGGAGGATATGACT-TTTGTAGGCGGAATAA---AT-CTT--CATATCTTCCTCACT-GCCGTGCAATAAATGTAt
gi|2 : ATAA---AT-CTT--CATATCTTCCTA-CT-GCCGTGCAATAAATGTAtatcttaataagatattatacatttattgcacggcagtaggaagatatgaagatttattgtatataacgaccttaagatagtctgaaatctttcgacatccagatacatgtcttcagtctaaatgtaacatggcggcttgatgacccattagactgaacattatgaacaagtttcatatactttttgctgctatcttctcccagacctctttttgataaagttggagaccgctgaattttgtactttgtcttttttcaacttcgttcgtcaatattgctacttatctctgaagcggaaaaactcgtacacgttccttgccatttccaaaacctttcagactatataagcacgaactattcgctagttacatgtaagaacatcaaaattaaatgcgtttacaatatagcgagaacagccgaacacctgttttaaatgttttctatggaaacttgcaacattcatatttttatacaacttcacatgacagcagcctagctgtgtgtatatttttgttaaggatatcaaacattgcagacaacacctctagtaccttttgatcccttttttcattttccaaactgagttatctcattttagcatttattacaatatgttaagcatggaacttacgtgtgatttttcttaagagttttatatctcaagatatttttgtgaatcttacgattgtcacaagtcagaacttaagacaattt
gi|20 : cgctgacctaggaggatatgacttttgtaggcggaataaatcttcatatcttcctcactgccgtgcaataaatgtatatcttaataagatattaCTCCCTT-CTAGCAGGGCAATAAATGTAtgtatataacgaccttaagatagtctgaaatctttcgacatccagatacatgtcttcagtctaaatgtaacatggcggcttgatgacccattagactgaacattatgaacaagtttcatatactttttgctgctatcttctcccagacctctttttgataaagttggagaccgctgaattttgtactttgtcttttttcaacttcgttcgtcaatattgctacttatctctgaagcggaaaaactcgtacacgttccttgccatttccaaaacctttcagactatataagcacgaactattcgctagttacatgtaagaacatcaaaattaaatgcgtttacaatatagcgagaacagccgaacacctgttttaaatgttttctatggaaacttgcaacattcatatttttatacaacttcacatgacagcagcctagctgtgtgtatatttttgttaaggatatcaaacattgcagacaacacctctagtaccttttgatcccttttttcattttccaaactgagttatctcattttagcatttattacaatatgttaagcatggaacttacgtgtgatttttcttaagagttttatatctcaagatatttttgtgaatcttacgattgtcacaagtcagaacttaagacaattt
gi|3 : ATTATACCT-CAAG-GGATAG-ACACG-ACGA-TTACTG-AAAT-ACGATTGG---T-TGAACAGA---TCAC-G-TGA--TC-A--GGGCGAC-AAAACTTCATGTACCCCTCC--CTC-G-GAGTGCCTCGGGACG-TCGTGTACTG-CATCCCTG-G---GGGAGTCT--CGC-GT--TTTTTCTTACGAGA---GATA-TTTTCAAGCTGTTA-ACT------GTTA----TTGTTGATATCT---T-GTTAT-T-GTT-T----GACAG-CTGTTGAC--AGGTGAA---A-TTGC-AT--ACAATTCA-TA-A-TCTACA-TTAAA---TT---GTAATAAAAT---GA-----A--T-ATCCTAAA-CA--GA-A---A-AAATCGAAATGCATGTATTGCT--AAT---TAAAT-TTGCTG----GGTTTTTTTTTTTCGTTG-TTGTTTGTTTTTTTTTTTTCCGGT-ATAATAAACAATTTATTGCCCTGCTTGGAGGGAGACATGAA-------GCTTTGTCCAACCCAGTAATATCATGTCCCA-CGGGCGTTGCCCTCGGGGGACATGATA-TTACAGAGTTGGACAA---AG-CTT--CATGTCTCCCTC-CTAGCAGGGCAATAAATGTAta
gi|5 : TTATACCT-CAAG-G-ATAG-ACACG-ACGA-TTATTG-AAAT-ACGATTGG---T-TGAACAGA---TCAC-G-TGA--TC-GGAGGGCAACAAAAACTTCATGTACCCCTCCCTCTC-GTGTGTGCCCTCGGACG-TCGTGTACTGCCATCCCTCGG---GGGACCCT--CGC-GT--TTTTTCTTACAAGA---GTTGTTTTTCAAGCTGTTA-CTT------GTTA----TTGTTACTATAT---TGGTTA--T-GTTGC----AACAGTTTGTTGAT--AAGAGGAAACA-TTAC-AT--ACAATTTA-TACA-TTTACACTTGAATGGTT---AT-ACAAAATTTAGA-----C--TAATTCTAA---A--AA-A---A-AAATCAAAA---A---ACT-CTGAAATATATAAAT-TTGT------GGTTTCTATTTCTTGTT
gi|6 : tATTCTACCT-CAAG-GGATAG-ACA-G-ACGAATTATTG-AAAT-ACGATTGG---TCTGAACAGA---TCAC-G-TGA--TC-G--GGGCAAC-AAA--TTCATGTAC---TCC--CTC-G-GTGTGCATCGGGACG-TCGTGTACTGGCATCCCTC-G---GG-AGCCTGCCGT-TT--TTTTTCTTACAAGA---GTTG-TTTTCAAGCTGTTTTACT------GTTA----TTGTTACTATAT---T-GTTAT-T-GTT-T----GACAG-TTGTTGAT--ACGAGAA---A-TTAC-AT--ACAATTTA-TA-A-TTT-CA-TTGAA---TG---GT-ATAAATT---AA-----C--T-AATTTAAA--A--AA-A---A-AAATCTAAAT-----TAT--------------AAT-TTGGT-----GGTTTTATTTTCTTGTTGCT
gi|7 : GGCGAC-AAAACTTCATGTACCCCTCC--CTC-G-G----------GACG-TCGTGTACTG-CATCCCCC-G---GGGAGCAT--CGC-GT--TTTTTCTTACGAGATCAGATA-TTTTCAAGCTGTTA-ACT------GTTA----TTGTTGCTATCT---T-GTTAT-T-GTT-T----GACAG-CTGTTGAC--AGGTGAA---A-TTAA-AT--ACAATTTA-TA-A-TCTACA-TTGAA---TT---GT-ATAAAAT---GAAT---A--T-ATCCTAAA-CA--TA-A---ACAAATCCAAATGCATGTATTGCT--AAT---TAAAT-T
gi|8 : GAA---TTTTGAT-ATAAAAT---GA-----A--T-ATCCTAAAACA--GA-ATAAA-AAATCCAAATGCATGTATTGCT--AAT---TAAAT-TTGCTG----GGTTTTTTTT---CGTTGTTTGTTTGGGTTTTTTTTC---GGTTATAATAAACAATTTATTGCCCTGCTAGGAGGGAGACATGAA-------G-TTTGTCCAA-CCAGT-ATATCA------------TGTTGTCCTCGGTGGTCATGATAGTTACTGGGTTGGACAA---ACGCTT--CATGTCTCCC
gi|9 : ATA-TTTTCAAATTGTGA-ACTTATTCAGTTACTATTTGTTACTGTTTGTTT-GTTAT-TTGTT-TCTTTAACAG-TTGTTGAT--CATTGGA---A-TTAC-AT--ACAATTTA-CA-A-TCCGTA-TTCAA---TT---GC-ATGAAAT----A-----A--G-GCTGTAAA--A--GATA---A-ACACTTTGATGC---TACTG------T---TAAACATTGCT-----GATCTTTTTCTCT
gi|9 : acTAATAAACAATTCATTGCCgtaataaacaattcattgcc
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): CGGACTAAGATCTGTCTTAAGACCAAAATTTGTCATAAGCTTGCAACATTAATAATTTTATGCAACTTTTTATGACAACAGCCTAGCTACATATATAATTTTCTTGAAATAGAAGAGAAAAAAAATATTTAGGGATATCCGTATCCTTGGACTACTAGTATATAGAACATTTCATATCCTTTTGATCCTTTTTTTAACTCCCGAAACTGAGTTTTCTTAATTTTAGTATTTGCTACAATATCCCAGAAGAAAATGTTAAGCATAAAACTTATCGTAAGATTTATCTTAAGATTTTTATAACTTAAGATAGTTTTGTGAAACAGCAGTGGCAATCTTTATGATTGTCATAAGTTAGATCTTAAGATAAT
Unaligned ( gi|12 ): AAACATTAAAAAAAAAAAGATTTTCTAGGCGGAAGAAATCTGCATATCCCCCTCACTGCGTGCAATAGAATGTTATGTGTCTATTAAGTTTATATCAAAATCCAATATTGTAC
Unaligned ( gi|14 ): TGAATAAAGTTGTAATTTCTATCTTGAAACTTTATATTCATATGCCATTCTGCATAATTGAATTATTGTTGCAAAATAAATAA
Unaligned ( gi|15 ): GAAGTAGAAGGGTTGTGTAAACTATAAAATATCTTCATATCTTCCTCACTGCCGTGCAATAATAAAATCATTAATTAAATA
Unaligned ( gi|17 ): AGAATTTTATAACTTAAGATAGTTTTGTGAAACAGCAGTGGCAATCTTATGATTGTCATAAGTTAGATCTTAAGATAAT
Alignments
lowQualScore : 111 111 11 1111 11 1 111 11 11 111 222222 1111 11111 222222 111 111 111 222222222222222 111 111 333333333333333333333 22222 1 222 1 4444444 111 33333333 11 111111 1
lowQualScore : 8 8 8 8 8 0 8 8 444 8 444 8 8 11 2222 6 5 11 8 8 8 8 5 8 444 11 8 11 444 6 8 333333 4444 2 1 11111 6 6 222222 6 99 000 5 5 77 5 5 5 0 5 000 000 5 888888888888888 333 888 5 000 5 1 666666666666666666666 5 55555 0 2 22 000 5 1 3333333 6 444 7 66666666 0 0 00 8 3 0 1 999999 77 77 1 3 2
lowQualScore : . . . . . . . . ... . ... . . .. .... . . .. . . . . . . ... .. . .. ... . . ...... .... . . ..... . . ...... . .. ... . . .. . . . . . ... ... . ............... ... ... . ... . . ..................... . ..... . . .. ... . . ....... . ... . ........ . . .. . . . . ...... .. .. . . .
lowQualScore : 0 0 0 0 0 8 0 0 000 0 000 0 0 00 2222 7 0 00 0 0 8 0 0 0 000 00 0 00 000 7 0 000000 2222 5 0 88888 7 7 555555 7 22 000 7 7 99 7 7 7 1 7 000 000 7 444444444444444 777 333 7 000 7 0 333333333333333333333 7 00000 8 0 00 555 5 0 3333333 7 777 3 00000000 2 2 00 0 2 6 4 000000 99 44 3 0 5
consensus : ATTATACCT-CAAG-GGATAG-ACACG-ACGA-TTATTG-AAAT-ACGATTGG---T-TGAACAGA---TCAC-G-TGA--TC-G--GGGCGAC-AAAACTTCATGTACCCCTCC--CTC-G-GNGTGCCTCGGGACG-TCGTGTACTGGCATCCCTC-G---GGGAGCCT--CGC-GT--TTTTTCTTACGAGA---GATA-TTTTCAAGCTGTTA-ACT------GTTA----TTGTTACTATNT---T-GTTAT-T-GTT-T----GACAG-CTGTTGA--CAGGTGAA---A-TTAC-AT--ACAATTTA-TA-A-TCTACA-TTGAA---TT---GT-ATAAAAT---GA-----A--T-ATCCTAAA-CA--GA-A---A-AAATCNAAATGCATGTATTGCT--AAT---TAAAT-TTGCTG----GGTTTTTTTTTCTCGTTGCTTGTTTGNNTTTTTTTTCTCCGGTTATAATAAACAATTTATTGCCCTGCTNGGAGGGAGACATGAA-------GCTTTGTCCGACCCAGTAATATCACGTCCC--CGGGCGTTGCCCTCGGGGGACATGATA-TTACTGGGTTGGACAA---AT-CTT--CATGTCTCCCTC-CTAGCAGGGCAATAAATGTA
Reference ( family-600 ) : ATTATACCT-CAAG-GGATAG-ACACG-ACGA-TTATTG-AAAT-ACGATTGG---T-TGAACAGA---TCAC-G-TGA--TC-G--GGGCGAC-AAAACTTCATGTACCCCTCC--CTC-G-GNGTGCCTCGGGACG-TCGTGTACTGGCATCCCTC-G---GGGAGCCT--CGC-GT--TTTTTCTTACGAGA---GATA-TTTTCAAGCTGTTA-ACT------GTTA----TTGTTACTATNT---T-GTTAT-T-GTT-T----GACAG-CTGTTGA--CAGGTGAA---A-TTAC-AT--ACAATTTA-TA-A-TCTACA-TTGAA---TT---GT-ATAAAAT---GA-----A--T-ATCCTAAA-CA--GA-A---A-AAATCNAAATGCATGTATTGCT--AAT---TAAAT-TTGCTG----GGTTTTTTTTTCTCGTTGCTTGTTTGNNTTTTTTTTCTCCGGTTATAATAAACAATTTATTGCCCTGCTNGGAGGGAGACATGAA-------GCTTTGTCCGACCCAGTAATATCACGTCCC--CGGGCGTTGCCCTCGGGGGACATGATA-TTACTGGGTTGGACAA---AT-CTT--CATGTCTCCCTC-CTAGCAGGGCAATAAATGTA
gi|1 : ATA-TGACTGGGGGGAACAATAAAT-CTT--CATATCTCTTTC-
gi|10 : ttgaatcaaatgtttcgaattttctatctgggtgaaacttttaaataatttccaatatgacacatctaagacataattgaagttattgttgcatataaaatataaaaaaactaaaaagctccggagcccgaaacccttagtggaaggatactgatgttttgtaggcgagaataaaaacagtgttcatcccatggctttacctcactgccgtgcataaatgttactacaccagtcttaaaagatgagagacaatatgaactattacattaccttgcacgcagtcaaagtTTATACCT-CAAG-GGATAGGACACGCACGA-TTACTG-AAAT-ACGATTGGAAGT-TGAACAGAGATCCACTG-TGAAATC-G--CGGCGAC-AAAACTTCATGTCCGCATCC--TTCCG-GAGTGCCTCGGGACGTTCGT-TACTGGCATCTCTC-GCACAGGAGCCT--CGCTATTGTTTTTCTTAGGAGA---GATA-TTTCCAAGCTCTTgaaacgacctaagatagttctaagaaaatatccttgtcgtaagcccagttctcagatacatacctggtcatatcaagtctaaggcatgtcaaacatggcgtgcttgatagacccaatttaagaactgaatcgatccttatgaacaagttctcataatacttattatgctaattgctaagttctgccccaacctctgtgataatagtgtgacgcgtgctctgagaagttctgtcacttgtcttattatttcaaaccactatcgttcggtcaatattgcctacttatctctgaaagcgcgaaaacaaaatatctgcgtacccataagttccttgctatttccaaatattcgccttacaaatagtgaactaatataaagcacgagaactattcgatcgtagtacatttgtaagaatcatcaaaattaattaatgacgttacattatagcggaagaaacagccgaacacctgttttactgtttctactgaagaaacttgtcagaacaatatcaggatggcccaatttttaattagcaacattccacaatgacagcagttatcctagctgtgtgggtatgattgtttgtgtaaagagtataatcgaatataacacattgacagacaggcagactacccttctagtaccattttgatccctatttttcatttctccaaaactgagttatcctcactttttaagcatcttattacaatatggttaagcatggagatctacgggtgatttatatcttaagatgtggtttatcatccctcaagataattttatttcccctgtgaatcttacgatattgtcacccaacagtcagaactttagaagggtaacattta
gi|11 : CTACTGGAAGGGAGACATGAAAGCGACAGCTTTGTCCG-CCCAGTAATATCACGTCCCCTCGGGCGTTGCCCTCGAGGA--ATGATA-TCACT-GGTTGTACAG-------TTAACATGTC---------------GCAATAAATGTA
gi|13 : GTGAA---AATTAC-AT--ACAATTTA-TA-AATCTACA-TTGAA---TT---GT-ATAAAAT---GATTTAAACTT-ATCTTAAG-CACGAA-A---A-AAATTAGA----------TACT----------AAT-TTGCTGTTTTGGTCTTTTTTt
gi|16 : TATACCTTCAATTGGATAG-ACACG-ACGA-TT-TTGAAAATGACGATAGG---T-TGAGCAGA---T-AC-GTTTA--TCTG--GGGCGAC-AAAAc
gi|18 : A----TCGCTA-TATTT---C-GTTATCT-GTT------GACAG-CTG-TGACCCAGGTGAA---A-TTACAATAAACAACTGATTC-A-TCTACA-TTGA
gi|19 : --CACATCTCCCTT-CTAGCAGGGCAATAAATGTA
gi|2 : CGCTGACCTAGGAGGATATGACT-TTTGTAGGCGGAATAA---AT-CTT--CATATCTTCCTCACT-GCCGTGCAATAAATGTAt
gi|2 : ATAA---AT-CTT--CATATCTTCCTA-CT-GCCGTGCAATAAATGTAtatcttaataagatattatacatttattgcacggcagtaggaagatatgaagatttattgtatataacgaccttaagatagtctgaaatctttcgacatccagatacatgtcttcagtctaaatgtaacatggcggcttgatgacccattagactgaacattatgaacaagtttcatatactttttgctgctatcttctcccagacctctttttgataaagttggagaccgctgaattttgtactttgtcttttttcaacttcgttcgtcaatattgctacttatctctgaagcggaaaaactcgtacacgttccttgccatttccaaaacctttcagactatataagcacgaactattcgctagttacatgtaagaacatcaaaattaaatgcgtttacaatatagcgagaacagccgaacacctgttttaaatgttttctatggaaacttgcaacattcatatttttatacaacttcacatgacagcagcctagctgtgtgtatatttttgttaaggatatcaaacattgcagacaacacctctagtaccttttgatcccttttttcattttccaaactgagttatctcattttagcatttattacaatatgttaagcatggaacttacgtgtgatttttcttaagagttttatatctcaagatatttttgtgaatcttacgattgtcacaagtcagaacttaagacaattt
gi|20 : cgctgacctaggaggatatgacttttgtaggcggaataaatcttcatatcttcctcactgccgtgcaataaatgtatatcttaataagatattaCTCCCTT-CTAGCAGGGCAATAAATGTAtgtatataacgaccttaagatagtctgaaatctttcgacatccagatacatgtcttcagtctaaatgtaacatggcggcttgatgacccattagactgaacattatgaacaagtttcatatactttttgctgctatcttctcccagacctctttttgataaagttggagaccgctgaattttgtactttgtcttttttcaacttcgttcgtcaatattgctacttatctctgaagcggaaaaactcgtacacgttccttgccatttccaaaacctttcagactatataagcacgaactattcgctagttacatgtaagaacatcaaaattaaatgcgtttacaatatagcgagaacagccgaacacctgttttaaatgttttctatggaaacttgcaacattcatatttttatacaacttcacatgacagcagcctagctgtgtgtatatttttgttaaggatatcaaacattgcagacaacacctctagtaccttttgatcccttttttcattttccaaactgagttatctcattttagcatttattacaatatgttaagcatggaacttacgtgtgatttttcttaagagttttatatctcaagatatttttgtgaatcttacgattgtcacaagtcagaacttaagacaattt
gi|3 : ATTATACCT-CAAG-GGATAG-ACACG-ACGA-TTACTG-AAAT-ACGATTGG---T-TGAACAGA---TCAC-G-TGA--TC-A--GGGCGAC-AAAACTTCATGTACCCCTCC--CTC-G-GAGTGCCTCGGGACG-TCGTGTACTG-CATCCCTG-G---GGGAGTCT--CGC-GT--TTTTTCTTACGAGA---GATA-TTTTCAAGCTGTTA-ACT------GTTA----TTGTTGATATCT---T-GTTAT-T-GTT-T----GACAG-CTGTTGA--CAGGTGAA---A-TTGC-AT--ACAATTCA-TA-A-TCTACA-TTAAA---TT---GTAATAAAAT---GA-----A--T-ATCCTAAA-CA--GA-A---A-AAATCGAAATGCATGTATTGCT--AAT---TAAAT-TTGCTG----GGTTTTTTTTTTTCGTTG-TTGTTTGTTTTTTTTTTTTCCGG-TATAATAAACAATTTATTGCCCTGCTTGGAGGGAGACATGAA-------GCTTTGTCCAACCCAGTAATATCATGTCCCA-CGGGCGTTGCCCTCGGGGGACATGATA-TTACAGAGTTGGACAA---AG-CTT--CATGTCTCCCTC-CTAGCAGGGCAATAAATGTAta
gi|5 : TTATACCT-CAAG-G-ATAG-ACACG-ACGA-TTATTG-AAAT-ACGATTGG---T-TGAACAGA---TCAC-G-TGA--TC-GGAGGGCAACAAAAACTTCATGTACCCCTCCCTCTC-GTGTGTGCCCTCGGACG-TCGTGTACTGCCATCCCTCGG---GGGACCCT--CGC-GT--TTTTTCTTACAAGA---GTTGTTTTTCAAGCTGTTA-CTT------GTTA----TTGTTACTATAT---TGGTTA--T-GTTGC----AACAGTTTGTTGA--TAAGAGGAAACA-TTAC-AT--ACAATTTA-TACA-TTTACACTTGAATGGTT---AT-ACAAAATTTAGA-----C--TAATTCTAA---A--AA-A---A-AAATCAAAA---A---ACT-CTGAAATATATAAAT-TTGT------GGTTTCTATTTCTTGTT
gi|6 : tATTCTACCT-CAAG-GGATAG-ACA-G-ACGAATTATTG-AAAT-ACGATTGG---TCTGAACAGA---TCAC-G-TGA--TC-G--GGGCAAC-AAA--TTCATGTAC---TCC--CTC-G-GTGTGCATCGGGACG-TCGTGTACTGGCATCCCTC-G---GG-AGCCTGCCGT-TT--TTTTTCTTACAAGA---GTTG-TTTTCAAGCTGTTTTACT------GTTA----TTGTTACTATAT---T-GTTAT-T-GTT-T----GACAG-TTGTTGA--TACGAGAA---A-TTAC-AT--ACAATTTA-TA-A-TTT-CA-TTGAA---TG---GT-ATAAATT---AA-----C--T-AATTTAAA--A--AA-A---A-AAATCTAAAT-----TAT--------------AAT-TTGGT-----GGTTTTATTTTCTTGTTGCT
gi|7 : GGCGAC-AAAACTTCATGTACCCCTCC--CTC-G-G----------GACG-TCGTGTACTG-CATCCCCC-G---GGGAGCAT--CGC-GT--TTTTTCTTACGAGATCAGATA-TTTTCAAGCTGTTA-ACT------GTTA----TTGTTGCTATCT---T-GTTAT-T-GTT-T----GACAG-CTGTTGA--CAGGTGAA---A-TTAA-AT--ACAATTTA-TA-A-TCTACA-TTGAA---TT---GT-ATAAAAT---GAAT---A--T-ATCCTAAA-CA--TA-A---ACAAATCCAAATGCATGTATTGCT--AAT---TAAAT-T
gi|8 : GAA---TTTTGAT-ATAAAAT---GA-----A--T-ATCCTAAAACA--GA-ATAAA-AAATCCAAATGCATGTATTGCT--AAT---TAAAT-TTGCTG----GGTTTTTTTT---CGTTGTTTGTTTGGGTTTTTTTTC---GGTTATAATAAACAATTTATTGCCCTGCTAGGAGGGAGACATGAA-------G-TTTGTCCAA-CCAGT-ATATCA------------TGTTGTCCTCGGTGGTCATGATAGTTACTGGGTTGGACAA---ACGCTT--CATGTCTCCC
gi|9 : ATA-TTTTCAAATTGTGA-ACTTATTCAGTTACTATTTGTTACTGTTTGTTT-GTTAT-TTGTT-TCTTTAACAG-TTGTTGA--TCATTGGA---A-TTAC-AT--ACAATTTA-CA-A-TCCGTA-TTCAA---TT---GC-ATGAAAT----A-----A--G-GCTGTAAA--A--GATA---A-ACACTTTGATGC---TACTG------T---TAAACATTGCT-----GATCTTTTTCTCT
gi|9 : acTAATAAACAATTCATTGCCgtaataaacaattcattgcc
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): CGGACTAAGATCTGTCTTAAGACCAAAATTTGTCATAAGCTTGCAACATTAATAATTTTATGCAACTTTTTATGACAACAGCCTAGCTACATATATAATTTTCTTGAAATAGAAGAGAAAAAAAATATTTAGGGATATCCGTATCCTTGGACTACTAGTATATAGAACATTTCATATCCTTTTGATCCTTTTTTTAACTCCCGAAACTGAGTTTTCTTAATTTTAGTATTTGCTACAATATCCCAGAAGAAAATGTTAAGCATAAAACTTATCGTAAGATTTATCTTAAGATTTTTATAACTTAAGATAGTTTTGTGAAACAGCAGTGGCAATCTTTATGATTGTCATAAGTTAGATCTTAAGATAAT
Unaligned ( gi|12 ): AAACATTAAAAAAAAAAAGATTTTCTAGGCGGAAGAAATCTGCATATCCCCCTCACTGCGTGCAATAGAATGTTATGTGTCTATTAAGTTTATATCAAAATCCAATATTGTAC
Unaligned ( gi|14 ): TGAATAAAGTTGTAATTTCTATCTTGAAACTTTATATTCATATGCCATTCTGCATAATTGAATTATTGTTGCAAAATAAATAA
Unaligned ( gi|15 ): GAAGTAGAAGGGTTGTGTAAACTATAAAATATCTTCATATCTTCCTCACTGCCGTGCAATAATAAAATCATTAATTAAATA
Unaligned ( gi|17 ): AGAATTTTATAACTTAAGATAGTTTTGTGAAACAGCAGTGGCAATCTTATGATTGTCATAAGTTAGATCTTAAGATAAT
Alignments
lowQualScore : 111 111 11 1111 11 1 111 11 11 111 222222 1111 11111 222222 111 111 111 222222222222222 111 111 333333333333333333333 22222 1 222 1 4444444 111 33333333 11 111111 1
lowQualScore : 8 8 8 8 8 0 8 8 444 8 444 8 8 11 2222 6 5 11 8 8 8 8 5 8 444 11 8 11 444 6 8 333333 4444 2 1 11111 6 6 222222 6 99 000 5 5 77 5 5 5 0 5 000 000 5 888888888888888 333 888 5 000 5 1 666666666666666666666 5 55555 0 2 22 000 5 1 3333333 6 444 7 66666666 0 0 00 8 3 0 1 999999 77 77 1 3 2
lowQualScore : . . . . . . . . ... . ... . . .. .... . . .. . . . . . . ... .. . .. ... . . ...... .... . . ..... . . ...... . .. ... . . .. . . . . . ... ... . ............... ... ... . ... . . ..................... . ..... . . .. ... . . ....... . ... . ........ . . .. . . . . ...... .. .. . . .
lowQualScore : 0 0 0 0 0 8 0 0 000 0 000 0 0 00 2222 7 0 00 0 0 8 0 0 0 000 00 0 00 000 7 0 000000 2222 5 0 88888 7 7 555555 7 22 000 7 7 99 7 7 7 1 7 000 000 7 444444444444444 777 333 7 000 7 0 333333333333333333333 7 00000 8 0 00 555 5 0 3333333 7 777 3 00000000 2 2 00 0 2 6 4 000000 99 44 3 0 5
consensus : ATTATACCT-CAAG-GGATAG-ACACG-ACGA-TTATTG-AAAT-ACGATTGG---T-TGAACAGA---TCAC-G-TGA--TC-G--GGGCGAC-AAAACTTCATGTACCCCTCC--CTC-G-GNGTGCCTCGGGACG-TCGTGTACTGGCATCCCTC-G---GGGAGCCT--CGC-GT--TTTTTCTTACGAGA---GATA-TTTTCAAGCTGTTA-ACT------GTTA----TTGTTACTATNT---T-GTTAT-T-GTT-T----GACAG-CTGTTGA--CAGGTGAA---A-TTAC-AT--ACAATTTA-TA-A-TCTACA-TTGAA---TT---GT-ATAAAAT---GA-----A--T-ATCCTAAA-CA--GA-A---A-AAATCNAAATGCATGTATTGCT--AAT---TAAAT-TTGCTG----GGTTTTTTTTTCTCGTTGCTTGTTTGNNTTTTTTTTCTCCGGTTATAATAAACAATTTATTGCCCTGCTNGGAGGGAGACATGAA-------GCTTTGTCCGACCCAGTAATATCACGTCCC--CGGGCGTTGCCCTCGGGGGACATGATA-TTACTGGGTTGGACAA---AT-CTT--CATGTCTCCCTC-CTAGCAGGGCAATAAATGTA
Reference ( family-600 ) : ATTATACCT-CAAG-GGATAG-ACACG-ACGA-TTATTG-AAAT-ACGATTGG---T-TGAACAGA---TCAC-G-TGA--TC-G--GGGCGAC-AAAACTTCATGTACCCCTCC--CTC-G-GNGTGCCTCGGGACG-TCGTGTACTGGCATCCCTC-G---GGGAGCCT--CGC-GT--TTTTTCTTACGAGA---GATA-TTTTCAAGCTGTTA-ACT------GTTA----TTGTTACTATNT---T-GTTAT-T-GTT-T----GACAG-CTGTTGA--CAGGTGAA---A-TTAC-AT--ACAATTTA-TA-A-TCTACA-TTGAA---TT---GT-ATAAAAT---GA-----A--T-ATCCTAAA-CA--GA-A---A-AAATCNAAATGCATGTATTGCT--AAT---TAAAT-TTGCTG----GGTTTTTTTTTCTCGTTGCTTGTTTGNNTTTTTTTTCTCCGGTTATAATAAACAATTTATTGCCCTGCTNGGAGGGAGACATGAA-------GCTTTGTCCGACCCAGTAATATCACGTCCC--CGGGCGTTGCCCTCGGGGGACATGATA-TTACTGGGTTGGACAA---AT-CTT--CATGTCTCCCTC-CTAGCAGGGCAATAAATGTA
gi|1 : ATA-TGACTGGGGGGAACAATAAAT-CTT--CATATCTCTTTC-
gi|10 : ttgaatcaaatgtttcgaattttctatctgggtgaaacttttaaataatttccaatatgacacatctaagacataattgaagttattgttgcatataaaatataaaaaaactaaaaagctccggagcccgaaacccttagtggaaggatactgatgttttgtaggcgagaataaaaacagtgttcatcccatggctttacctcactgccgtgcataaatgttactacaccagtcttaaaagatgagagacaatatgaactattacattaccttgcacgcagtcaaagtTTATACCT-CAAG-GGATAGGACACGCACGA-TTACTG-AAAT-ACGATTGGAAGT-TGAACAGAGATCCACTG-TGAAATC-G--CGGCGAC-AAAACTTCATGTCCGCATCC--TTCCG-GAGTGCCTCGGGACGTTCGT-TACTGGCATCTCTC-GCACAGGAGCCT--CGCTATTGTTTTTCTTAGGAGA---GATA-TTTCCAAGCTCTTgaaacgacctaagatagttctaagaaaatatccttgtcgtaagcccagttctcagatacatacctggtcatatcaagtctaaggcatgtcaaacatggcgtgcttgatagacccaatttaagaactgaatcgatccttatgaacaagttctcataatacttattatgctaattgctaagttctgccccaacctctgtgataatagtgtgacgcgtgctctgagaagttctgtcacttgtcttattatttcaaaccactatcgttcggtcaatattgcctacttatctctgaaagcgcgaaaacaaaatatctgcgtacccataagttccttgctatttccaaatattcgccttacaaatagtgaactaatataaagcacgagaactattcgatcgtagtacatttgtaagaatcatcaaaattaattaatgacgttacattatagcggaagaaacagccgaacacctgttttactgtttctactgaagaaacttgtcagaacaatatcaggatggcccaatttttaattagcaacattccacaatgacagcagttatcctagctgtgtgggtatgattgtttgtgtaaagagtataatcgaatataacacattgacagacaggcagactacccttctagtaccattttgatccctatttttcatttctccaaaactgagttatcctcactttttaagcatcttattacaatatggttaagcatggagatctacgggtgatttatatcttaagatgtggtttatcatccctcaagataattttatttcccctgtgaatcttacgatattgtcacccaacagtcagaactttagaagggtaacattta
gi|11 : CTACTGGAAGGGAGACATGAAAGCGACAGCTTTGTCCG-CCCAGTAATATCACGTCCCCTCGGGCGTTGCCCTCGAGGA--ATGATA-TCACT-GGTTGTACAG-------TTAACATGTC---------------GCAATAAATGTA
gi|13 : GTGAA---AATTAC-AT--ACAATTTA-TA-AATCTACA-TTGAA---TT---GT-ATAAAAT---GATTTAAACTT-ATCTTAAG-CACGAA-A---A-AAATTAGA----------TACT----------AAT-TTGCTGTTTTGGTCTTTTTTt
gi|16 : TATACCTTCAATTGGATAG-ACACG-ACGA-TT-TTGAAAATGACGATAGG---T-TGAGCAGA---T-AC-GTTTA--TCTG--GGGCGAC-AAAAc
gi|18 : A----TCGCTA-TATTT---C-GTTATCT-GTT------GACAG-CTG-TGACCCAGGTGAA---A-TTACAATAAACAACTGATTC-A-TCTACA-TTGA
gi|19 : --CACATCTCCCTT-CTAGCAGGGCAATAAATGTA
gi|2 : CGCTGACCTAGGAGGATATGACT-TTTGTAGGCGGAATAA---AT-CTT--CATATCTTCCTCACT-GCCGTGCAATAAATGTAt
gi|2 : ATAA---AT-CTT--CATATCTTCCTA-CT-GCCGTGCAATAAATGTAtatcttaataagatattatacatttattgcacggcagtaggaagatatgaagatttattgtatataacgaccttaagatagtctgaaatctttcgacatccagatacatgtcttcagtctaaatgtaacatggcggcttgatgacccattagactgaacattatgaacaagtttcatatactttttgctgctatcttctcccagacctctttttgataaagttggagaccgctgaattttgtactttgtcttttttcaacttcgttcgtcaatattgctacttatctctgaagcggaaaaactcgtacacgttccttgccatttccaaaacctttcagactatataagcacgaactattcgctagttacatgtaagaacatcaaaattaaatgcgtttacaatatagcgagaacagccgaacacctgttttaaatgttttctatggaaacttgcaacattcatatttttatacaacttcacatgacagcagcctagctgtgtgtatatttttgttaaggatatcaaacattgcagacaacacctctagtaccttttgatcccttttttcattttccaaactgagttatctcattttagcatttattacaatatgttaagcatggaacttacgtgtgatttttcttaagagttttatatctcaagatatttttgtgaatcttacgattgtcacaagtcagaacttaagacaattt
gi|20 : cgctgacctaggaggatatgacttttgtaggcggaataaatcttcatatcttcctcactgccgtgcaataaatgtatatcttaataagatattaCTCCCTT-CTAGCAGGGCAATAAATGTAtgtatataacgaccttaagatagtctgaaatctttcgacatccagatacatgtcttcagtctaaatgtaacatggcggcttgatgacccattagactgaacattatgaacaagtttcatatactttttgctgctatcttctcccagacctctttttgataaagttggagaccgctgaattttgtactttgtcttttttcaacttcgttcgtcaatattgctacttatctctgaagcggaaaaactcgtacacgttccttgccatttccaaaacctttcagactatataagcacgaactattcgctagttacatgtaagaacatcaaaattaaatgcgtttacaatatagcgagaacagccgaacacctgttttaaatgttttctatggaaacttgcaacattcatatttttatacaacttcacatgacagcagcctagctgtgtgtatatttttgttaaggatatcaaacattgcagacaacacctctagtaccttttgatcccttttttcattttccaaactgagttatctcattttagcatttattacaatatgttaagcatggaacttacgtgtgatttttcttaagagttttatatctcaagatatttttgtgaatcttacgattgtcacaagtcagaacttaagacaattt
gi|3 : ATTATACCT-CAAG-GGATAG-ACACG-ACGA-TTACTG-AAAT-ACGATTGG---T-TGAACAGA---TCAC-G-TGA--TC-A--GGGCGAC-AAAACTTCATGTACCCCTCC--CTC-G-GAGTGCCTCGGGACG-TCGTGTACTG-CATCCCTG-G---GGGAGTCT--CGC-GT--TTTTTCTTACGAGA---GATA-TTTTCAAGCTGTTA-ACT------GTTA----TTGTTGATATCT---T-GTTAT-T-GTT-T----GACAG-CTGTTGA--CAGGTGAA---A-TTGC-AT--ACAATTCA-TA-A-TCTACA-TTAAA---TT---GTAATAAAAT---GA-----A--T-ATCCTAAA-CA--GA-A---A-AAATCGAAATGCATGTATTGCT--AAT---TAAAT-TTGCTG----GGTTTTTTTTTTTCGTTG-TTGTTTGTTTTTTTTTTTTCCGG-TATAATAAACAATTTATTGCCCTGCTTGGAGGGAGACATGAA-------GCTTTGTCCAACCCAGTAATATCATGTCCCA-CGGGCGTTGCCCTCGGGGGACATGATA-TTACAGAGTTGGACAA---AG-CTT--CATGTCTCCCTC-CTAGCAGGGCAATAAATGTAta
gi|5 : TTATACCT-CAAG-G-ATAG-ACACG-ACGA-TTATTG-AAAT-ACGATTGG---T-TGAACAGA---TCAC-G-TGA--TC-GGAGGGCAACAAAAACTTCATGTACCCCTCCCTCTC-GTGTGTGCCCTCGGACG-TCGTGTACTGCCATCCCTCGG---GGGACCCT--CGC-GT--TTTTTCTTACAAGA---GTTGTTTTTCAAGCTGTTA-CTT------GTTA----TTGTTACTATAT---TGGTTA--T-GTTGC----AACAGTTTGTTGA--TAAGAGGAAACA-TTAC-AT--ACAATTTA-TACA-TTTACACTTGAATGGTT---AT-ACAAAATTTAGA-----C--TAATTCTAA---A--AA-A---A-AAATCAAAA---A---ACT-CTGAAATATATAAAT-TTGT------GGTTTCTATTTCTTGTT
gi|6 : tATTCTACCT-CAAG-GGATAG-ACA-G-ACGAATTATTG-AAAT-ACGATTGG---TCTGAACAGA---TCAC-G-TGA--TC-G--GGGCAAC-AAA--TTCATGTAC---TCC--CTC-G-GTGTGCATCGGGACG-TCGTGTACTGGCATCCCTC-G---GG-AGCCTGCCGT-TT--TTTTTCTTACAAGA---GTTG-TTTTCAAGCTGTTTTACT------GTTA----TTGTTACTATAT---T-GTTAT-T-GTT-T----GACAG-TTGTTGA--TACGAGAA---A-TTAC-AT--ACAATTTA-TA-A-TTT-CA-TTGAA---TG---GT-ATAAATT---AA-----C--T-AATTTAAA--A--AA-A---A-AAATCTAAAT-----TAT--------------AAT-TTGGT-----GGTTTTATTTTCTTGTTGCT
gi|7 : GGCGAC-AAAACTTCATGTACCCCTCC--CTC-G-G----------GACG-TCGTGTACTG-CATCCCCC-G---GGGAGCAT--CGC-GT--TTTTTCTTACGAGATCAGATA-TTTTCAAGCTGTTA-ACT------GTTA----TTGTTGCTATCT---T-GTTAT-T-GTT-T----GACAG-CTGTTGA--CAGGTGAA---A-TTAA-AT--ACAATTTA-TA-A-TCTACA-TTGAA---TT---GT-ATAAAAT---GAAT---A--T-ATCCTAAA-CA--TA-A---ACAAATCCAAATGCATGTATTGCT--AAT---TAAAT-T
gi|8 : GAA---TTTTGAT-ATAAAAT---GA-----A--T-ATCCTAAAACA--GA-ATAAA-AAATCCAAATGCATGTATTGCT--AAT---TAAAT-TTGCTG----GGTTTTTTTT---CGTTGTTTGTTTGGGTTTTTTTTC---GGTTATAATAAACAATTTATTGCCCTGCTAGGAGGGAGACATGAA-------G-TTTGTCCAA-CCAGT-ATATCA------------TGTTGTCCTCGGTGGTCATGATAGTTACTGGGTTGGACAA---ACGCTT--CATGTCTCCC
gi|9 : ATA-TTTTCAAATTGTGA-ACTTATTCAGTTACTATTTGTTACTGTTTGTTT-GTTAT-TTGTT-TCTTTAACAG-TTGTTGA--TCATTGGA---A-TTAC-AT--ACAATTTA-CA-A-TCCGTA-TTCAA---TT---GC-ATGAAAT----A-----A--G-GCTGTAAA--A--GATA---A-ACACTTTGATGC---TACTG------T---TAAACATTGCT-----GATCTTTTTCTCT
gi|9 : acTAATAAACAATTCATTGCCgtaataaacaattcattgcc
blockSeqs : T T . . A A G . C . . T . GGA A C CT . T A . C G . GC . . TCA T T TATTCA CTAT A C GTTT . T TCTTT T . AAC . A AA T C . C TGG TTG A TTAGACTA AAC G T TAA C G TGCATGTATTGCTAAT A G C GG . T T . C AAC A TGTCCCA AT G A T ACG AA CA A A G
blockSeqs : . . . . . . . . . . . . . TG . C . . . T . G . . . . . . . . . . C A TG . . GC . . . . . . . . . . . . . GAATAT AC A . . . A TGCATGTATTGCTAAT . G T A . . AA . . AC . G A AT . T A C T
blockSeqs : . . . . . . . . . . . . . A . C . . . T . . . . . . . . . . . . C A T . . T . . . . . . . . . . . . . GAAT AC A . . . T TGCATGTATTGCTAAT . . TC . G G AT . A A C T
blockSeqs : . . . . . . . . . . . . . G . . . . . . . . . . . . . . . . . . C C T . . T . . . . . . . . . . . . . AACT A T . . . C AACTCTGAAATATA . . . . G AG . T . A G
blockSeqs : . . . C T T . . T . . . . . . . . . . . . . GAAT A G . . . C TGCTACTGT . . . . C . A G
blockSeqs : . . . . . . . . . . . AAG . G . . . T TTAT . . .
blockSeqCons : *** *** ** *** ** T***** ** GAAT*********** AC* G** TGCATGTACTGCTAAT***** ***** AT****
originalCons : ATTATACCT-CAAG-GGATAG-ACACG-ACGA-TTATTG-AAAT-ACGATTGG---T-TGAACAGA---TCAC-G-TGA--TC-G--GGGCGAC-AAAACTTCATGTACCCCTCC--CTC-G-GNGTGCCTCGGGACG-TCGTGTACTGGCATCCCTC-G---GGGAGCCT--CGC-GT--TTTTTCTTACGAGA---GATA-TTTTCAAGCTGTTA-ACT------GTTA----TTGTTACTATNT---T-GTTAT-T-GTT-T----GACAG-CTGTTGA--CAGGTGAA---A-TTAC-AT--ACAATTTA-TA-A-TCTACA-TTGAA---TT---GT-ATAAAAT---GA-----A--T-ATCCTAAA-CA--GA-A---A-AAATCNAAATGCATGTATTGCT--AAT---TAAAT-TTGCTG----GGTTTTTTTTTCTCGTTGCTTGTTTGNNTTTTTTTTCTCCGGTTATAATAAACAATTTATTGCCCTGCTNGGAGGGAGACATGAA-------GCTTTGTCCGACCCAGTAATATCACGTCCC--CGGGCGTTGCCCTCGGGGGACATGATA-TTACTGGGTTGGACAA---AT-CTT--CATGTCTCCCTC-CTAGCAGGGCAATAAATGTA
finalCons : ATTATACCT-CAAG-GGATAG-ACACG-ACGA-TTATTG-AAAT-ACGATTGG---T-TGAACAGA---TCAC-G-TGA--TC-G--GGGCGAC-AAAACTTCATGTACCCCTCC--CTC-G-GNGTGCCTCGGGACG-TCGTGTACTGGCATCCCTC-G---GGGAGCCT--CGC-GT--TTTTTCTTACGAGA---GATA-TTTTCAAGCTGTTA-ACT------GTTA----TTGTTACTATNT---T-GTTAT-T-GTTT-----GACAG-CTGTTGA--CAGGTGAA---A-TTAC-AT--ACAATTTA-TA-A-TCTACA-TTGAA---TT---GT-ATAAAATGAAT-----------ATCCTAAAC-AG--A-A---A-AAATCNAAATGCATGTACTGCTAAT-----TAAAT-TTGCT-----GGTTTTTTTTTCTCGTTGCTTGTTTGNNTTTTTTTTCTCCGGTTATAATAAACAATTTATTGCCCTGCTNGGAGGGAGACATGAA-------GCTTTGTCCGACCCAGTAATATCACGTCCC--CGGGCGTTGCCCTCGGGGGACATGATA-TTACTGGGTTGGACAAAT----CTT--CATGTCTCCCTC-CTAGCAGGGCAATAAATGTA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): CGGACTAAGATCTGTCTTAAGACCAAAATTTGTCATAAGCTTGCAACATTAATAATTTTATGCAACTTTTTATGACAACAGCCTAGCTACATATATAATTTTCTTGAAATAGAAGAGAAAAAAAATATTTAGGGATATCCGTATCCTTGGACTACTAGTATATAGAACATTTCATATCCTTTTGATCCTTTTTTTAACTCCCGAAACTGAGTTTTCTTAATTTTAGTATTTGCTACAATATCCCAGAAGAAAATGTTAAGCATAAAACTTATCGTAAGATTTATCTTAAGATTTTTATAACTTAAGATAGTTTTGTGAAACAGCAGTGGCAATCTTTATGATTGTCATAAGTTAGATCTTAAGATAAT
Unaligned ( gi|12 ): AAACATTAAAAAAAAAAAGATTTTCTAGGCGGAAGAAATCTGCATATCCCCCTCACTGCGTGCAATAGAATGTTATGTGTCTATTAAGTTTATATCAAAATCCAATATTGTAC
Unaligned ( gi|14 ): TGAATAAAGTTGTAATTTCTATCTTGAAACTTTATATTCATATGCCATTCTGCATAATTGAATTATTGTTGCAAAATAAATAA
Unaligned ( gi|15 ): GAAGTAGAAGGGTTGTGTAAACTATAAAATATCTTCATATCTTCCTCACTGCCGTGCAATAATAAAATCATTAATTAAATA
Unaligned ( gi|17 ): AGAATTTTATAACTTAAGATAGTTTTGTGAAACAGCAGTGGCAATCTTATGATTGTCATAAGTTAGATCTTAAGATAAT
Alignments
lowQualScore : 111 111 11 11 1 111 11 11 111 222222 1111 111 111 222222 111 1111111 2222222222222 1111 111 444444444444444444444 1111 1 222 1 4444444 111 33333333 11 111111 1
lowQualScore : 8 8 8 8 8 0 8 8 444 8 444 8 8 11 8 99 6 5 99 8 8 8 5 444 8 11 8 11 444 6 8 333333 4444 2 1 111 6 222 222222 6 99 555 5 77 5 5 5 0 5 4444444 5 8888888888888 5 7777 5 000 5 1 111111111111111111111 5 2 6 4444 55 2 22 000 5 1 3333333 6 444 7 66666666 0 0 00 8 3 0 1 999999 77 77 1 3 2
lowQualScore : . . . . . . . . ... . ... . . .. . .. . . .. . . . . ... . .. . .. ... . . ...... .... . . ... . ... ...... . .. ... . .. . . . . . ....... . ............. . .... . ... . . ..................... . . . .... .. . .. ... . . ....... . ... . ........ . . .. . . . . ...... .. .. . . .
lowQualScore : 0 0 0 0 0 8 0 0 000 0 000 0 0 00 0 22 7 0 00 0 8 0 0 000 0 00 0 00 000 7 0 000000 2222 5 0 777 7 555 555555 7 22 777 7 99 7 7 7 1 7 4444444 7 3333333333333 7 3333 7 000 7 0 777777777777777777777 7 5 7 2222 00 0 00 555 5 0 3333333 7 777 3 00000000 2 2 00 0 2 6 4 000000 99 44 3 0 5
consensus : ATTATACCT-CAAG-GGATAG-ACACG-ACGA-TTATTG-AAAT-ACGATTGG---T-TGAACAGA---TCAC-G-TGA--TC-GG--GGCGACAAAA-CTTCATGTACCCCTCCCTC--G-GNGTGCCTCGGGACG-TCGTGTACTGGCATCCCTCG---GGG-AGCCT--CGC-GT--TTTTTCTTACGAGA---GATATTTT-CAAGCTGTTA-ACT------GTTA----TTGTTACTATNT---TG-TTAT-T-GTT-T----GACAGCT-GTTGAC--AGGTGAAA---TTAC-AT--ACAATTTA-TA-A-TCTACA-TTGAAT---T---GT-ATAAAAT---GA---A----TA-TCCTAAA-CA-GA-A---A-AAATCNAAATGCATGTACTGCT--AAT---TAAAT-TTGCT-GGTTT----TTTTTTCTCGTTGCTTGTTTGNNTTTTTTTTCTCCGGTTATAATAAACAATTTATTGCCCTGCTNGGAGGGAGACATGAA-------GCTTTGTCCGACCCAGTAATATCACGTCCC--CGGGCGTTGCCCTCGGGGGACATGATA-TTACTGGGTTGGACAA---AT-CTT--CATGTCTCCCTC-CTAGCAGGGCAATAAATGTA
Reference ( family-600 ) : ATTATACCT-CAAG-GGATAG-ACACG-ACGA-TTATTG-AAAT-ACGATTGG---T-TGAACAGA---TCAC-G-TGA--TC-GG--GGCGACAAAA-CTTCATGTACCCCTCCCTC--G-GNGTGCCTCGGGACG-TCGTGTACTGGCATCCCTCG---GGG-AGCCT--CGC-GT--TTTTTCTTACGAGA---GATATTTT-CAAGCTGTTA-ACT------GTTA----TTGTTACTATNT---TG-TTAT-T-GTT-T----GACAGCT-GTTGAC--AGGTGAAA---TTAC-AT--ACAATTTA-TA-A-TCTACA-TTGAAT---T---GT-ATAAAAT---GA---A----TA-TCCTAAA-CA-GA-A---A-AAATCNAAATGCATGTACTGCT--AAT---TAAAT-TTGCT-GGTTT----TTTTTTCTCGTTGCTTGTTTGNNTTTTTTTTCTCCGGTTATAATAAACAATTTATTGCCCTGCTNGGAGGGAGACATGAA-------GCTTTGTCCGACCCAGTAATATCACGTCCC--CGGGCGTTGCCCTCGGGGGACATGATA-TTACTGGGTTGGACAA---AT-CTT--CATGTCTCCCTC-CTAGCAGGGCAATAAATGTA
gi|1 : ATA-TGACTGGGGGGAACAATAAAT-CTT--CATATCTCTTTC-
gi|10 : ttgaatcaaatgtttcgaattttctatctgggtgaaacttttaaataatttccaatatgacacatctaagacataattgaagttattgttgcatataaaatataaaaaaactaaaaagctccggagcccgaaacccttagtggaaggatactgatgttttgtaggcgagaataaaaacagtgttcatcccatggctttacctcactgccgtgcataaatgttactacaccagtcttaaaagatgagagacaatatgaactattacattaccttgcacgcagtcaaagtTTATACCT-CAAG-GGATAGGACACGCACGA-TTACTG-AAAT-ACGATTGGAAGT-TGAACAGAGATCCACTG-TGAAATC-GC--GGCGACAAAA-CTTCATGTCCGCATCCTTCC-G-GAGTGCCTCGGGACGTTCGT-TACTGGCATCTCTCGCACAGG-AGCCT--CGCTATTGTTTTTCTTAGGAGA---GATATTTC-CAAGCTCTTgaaacgacctaagatagttctaagaaaatatccttgtcgtaagcccagttctcagatacatacctggtcatatcaagtctaaggcatgtcaaacatggcgtgcttgatagacccaatttaagaactgaatcgatccttatgaacaagttctcataatacttattatgctaattgctaagttctgccccaacctctgtgataatagtgtgacgcgtgctctgagaagttctgtcacttgtcttattatttcaaaccactatcgttcggtcaatattgcctacttatctctgaaagcgcgaaaacaaaatatctgcgtacccataagttccttgctatttccaaatattcgccttacaaatagtgaactaatataaagcacgagaactattcgatcgtagtacatttgtaagaatcatcaaaattaattaatgacgttacattatagcggaagaaacagccgaacacctgttttactgtttctactgaagaaacttgtcagaacaatatcaggatggcccaatttttaattagcaacattccacaatgacagcagttatcctagctgtgtgggtatgattgtttgtgtaaagagtataatcgaatataacacattgacagacaggcagactacccttctagtaccattttgatccctatttttcatttctccaaaactgagttatcctcactttttaagcatcttattacaatatggttaagcatggagatctacgggtgatttatatcttaagatgtggtttatcatccctcaagataattttatttcccctgtgaatcttacgatattgtcacccaacagtcagaactttagaagggtaacattta
gi|11 : CTACTGGAAGGGAGACATGAAAGCGACAGCTTTGTCCG-CCCAGTAATATCACGTCCCCTCGGGCGTTGCCCTCGAGGA--ATGATA-TCACT-GGTTGTACAG-------TTAACATGTC---------------GCAATAAATGTA
gi|13 : GTGAAAA--TTAC-AT--ACAATTTA-TA-AATCTACA-TTGAAT---T---GT-ATAAAAT---GATTTAAACTTA-TCTTAAG-CACGA-A---A-AAAATTAGA------TACT-------------AAT-TTGCT-GTTTTGGTCTTTTTTCt
gi|16 : TATACCTTCAATTGGATAG-ACACG-ACGA-TT-TTGAAAATGACGATAGG---T-TGAGCAGA---T-AC-GTTTA--TCTGG--GGCGACAAAA-
gi|18 : A----TCGCTA-TATTT---CG-TTATCT-GTT------GACAGCT-GT-GACCCAGGTGAAA---TTACAATAAACAACTGATTC-A-TCTACA-TTGA
gi|19 : --CACATCTCCCTT-CTAGCAGGGCAATAAATGTA
gi|2 : CGCTGACCTAGGAGGATATGACT-TTTGTAGGCGGAATAA---AT-CTT--CATATCTTCCTCACT-GCCGTGCAATAAATGTAt
gi|2 : ATAA---AT-CTT--CATATCTTCCTA-CT-GCCGTGCAATAAATGTAtatcttaataagatattatacatttattgcacggcagtaggaagatatgaagatttattgtatataacgaccttaagatagtctgaaatctttcgacatccagatacatgtcttcagtctaaatgtaacatggcggcttgatgacccattagactgaacattatgaacaagtttcatatactttttgctgctatcttctcccagacctctttttgataaagttggagaccgctgaattttgtactttgtcttttttcaacttcgttcgtcaatattgctacttatctctgaagcggaaaaactcgtacacgttccttgccatttccaaaacctttcagactatataagcacgaactattcgctagttacatgtaagaacatcaaaattaaatgcgtttacaatatagcgagaacagccgaacacctgttttaaatgttttctatggaaacttgcaacattcatatttttatacaacttcacatgacagcagcctagctgtgtgtatatttttgttaaggatatcaaacattgcagacaacacctctagtaccttttgatcccttttttcattttccaaactgagttatctcattttagcatttattacaatatgttaagcatggaacttacgtgtgatttttcttaagagttttatatctcaagatatttttgtgaatcttacgattgtcacaagtcagaacttaagacaattt
gi|20 : cgctgacctaggaggatatgacttttgtaggcggaataaatcttcatatcttcctcactgccgtgcaataaatgtatatcttaataagatattaCTCCCTT-CTAGCAGGGCAATAAATGTAtgtatataacgaccttaagatagtctgaaatctttcgacatccagatacatgtcttcagtctaaatgtaacatggcggcttgatgacccattagactgaacattatgaacaagtttcatatactttttgctgctatcttctcccagacctctttttgataaagttggagaccgctgaattttgtactttgtcttttttcaacttcgttcgtcaatattgctacttatctctgaagcggaaaaactcgtacacgttccttgccatttccaaaacctttcagactatataagcacgaactattcgctagttacatgtaagaacatcaaaattaaatgcgtttacaatatagcgagaacagccgaacacctgttttaaatgttttctatggaaacttgcaacattcatatttttatacaacttcacatgacagcagcctagctgtgtgtatatttttgttaaggatatcaaacattgcagacaacacctctagtaccttttgatcccttttttcattttccaaactgagttatctcattttagcatttattacaatatgttaagcatggaacttacgtgtgatttttcttaagagttttatatctcaagatatttttgtgaatcttacgattgtcacaagtcagaacttaagacaattt
gi|3 : ATTATACCT-CAAG-GGATAG-ACACG-ACGA-TTACTG-AAAT-ACGATTGG---T-TGAACAGA---TCAC-G-TGA--TC-AG--GGCGACAAAA-CTTCATGTACCCCTCCCTC--G-GAGTGCCTCGGGACG-TCGTGTACTG-CATCCCTGG---GGG-AGTCT--CGC-GT--TTTTTCTTACGAGA---GATATTTT-CAAGCTGTTA-ACT------GTTA----TTGTTGATATCT---TG-TTAT-T-GTT-T----GACAGCT-GTTGAC--AGGTGAAA---TTGC-AT--ACAATTCA-TA-A-TCTACA-TTAAAT---T---GTAATAAAAT---GA---A----TA-TCCTAAA-CA-GA-A---A-AAATCGAAATGCATGTATTGCT--AAT---TAAAT-TTGCTGGGTTT----TTTTTTTTCGTTG-TTGTTTGTTTTTTTTTTTTCCGG-TATAATAAACAATTTATTGCCCTGCTTGGAGGGAGACATGAA-------GCTTTGTCCAACCCAGTAATATCATGTCCCA-CGGGCGTTGCCCTCGGGGGACATGATA-TTACAGAGTTGGACAA---AG-CTT--CATGTCTCCCTC-CTAGCAGGGCAATAAATGTAta
gi|5 : TTATACCT-CAAG-G-ATAG-ACACG-ACGA-TTATTG-AAAT-ACGATTGG---T-TGAACAGA---TCAC-G-TGA--TC-GGAGGGCAACAAAAACTTCATGTACCCCTCCCTCTCGTGTGTGCCCTCGGACG-TCGTGTACTGCCATCCCTCG---GGGGACCCT--CGC-GT--TTTTTCTTACAAGA---GTTGTTTTTCAAGCTGTTA-CTT------GTTA----TTGTTACTATAT---TGGTTAT---GTTGC----AACAGTTTGTTGAT--AAGAGGAAACATTAC-AT--ACAATTTA-TACA-TTTACACTTGAATGGTT---AT-ACAAAATTTAGA---C----TAATTCTAAA----AA-A---A-AAATCAAAA---A---ACT-CTGAAATATATAAAT-TTG-T-GGTTT----CTATTTCTTGTT
gi|6 : tATTCTACCT-CAAG-GGATAG-ACA-G-ACGAATTATTG-AAAT-ACGATTGG---TCTGAACAGA---TCAC-G-TGA--TC-GG--GGCAACAAA---TTCATGTAC---TCCCTC--G-GTGTGCATCGGGACG-TCGTGTACTGGCATCCCTCG---GG--AGCCTGCCGT-TT--TTTTTCTTACAAGA---GTTGTTTT-CAAGCTGTTTTACT------GTTA----TTGTTACTATAT---TG-TTAT-T-GTT-T----GACAGTT-GTTGAT--ACGAGAAA---TTAC-AT--ACAATTTA-TA-A-TTT-CA-TTGAAT---G---GT-ATAAATT---AA---C----TA-ATTTAAA--A-AA-A---A-AAATCTAAAT-TAT------------------AAT-TTGGT-GGTTT----TATTTTCTTGTTGCT
gi|7 : --GGCGACAAAA-CTTCATGTACCCCTCCCTC--G-G----------GACG-TCGTGTACTG-CATCCCCCG---GGG-AGCAT--CGC-GT--TTTTTCTTACGAGATCAGATATTTT-CAAGCTGTTA-ACT------GTTA----TTGTTGCTATCT---TG-TTAT-T-GTT-T----GACAGCT-GTTGAC--AGGTGAAA---TTAA-AT--ACAATTTA-TA-A-TCTACA-TTGAAT---T---GT-ATAAAAT---GAAT-A----TA-TCCTAAA-CA-TA-A---ACAAATCCAAATGCATGTATTGCT--AAT---TAAAT-T
gi|8 : GAAT---TTTGAT-ATAAAAT---GA---A----TA-TCCTAAAACA-GA-ATAAA-AAATCCAAATGCATGTATTGCT--AAT---TAAAT-TTGCT-GGGTT----TTTTTTC--GTTGTTTGTTTGGGTTTTTTTTC---GGTTATAATAAACAATTTATTGCCCTGCTAGGAGGGAGACATGAA-------G-TTTGTCCAA-CCAGT-ATATCA------------TGTTGTCCTCGGTGGTCATGATAGTTACTGGGTTGGACAA---ACGCTT--CATGTCTCCC
gi|9 : ATATTTT-CAAATTGTGA-ACTTATTCAGTTACTATTTGTTACTGTTTGTTTG-TTAT-TTGTT-TCTTTAACAGTT-GTTGAT--CATTGGAA---TTAC-AT--ACAATTTA-CA-A-TCCGTA-TTCAAT---T---GC-ATGAAAT----A---A----GG-CTGTAAA--A-GATA---A-ACACTTTGATGC---TACTG------T---TAAACATTGCT-GATCT----TTTTCTCT
gi|9 : acTAATAAACAATTCATTGCCgtaataaacaattcattgcc
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): CGGACTAAGATCTGTCTTAAGACCAAAATTTGTCATAAGCTTGCAACATTAATAATTTTATGCAACTTTTTATGACAACAGCCTAGCTACATATATAATTTTCTTGAAATAGAAGAGAAAAAAAATATTTAGGGATATCCGTATCCTTGGACTACTAGTATATAGAACATTTCATATCCTTTTGATCCTTTTTTTAACTCCCGAAACTGAGTTTTCTTAATTTTAGTATTTGCTACAATATCCCAGAAGAAAATGTTAAGCATAAAACTTATCGTAAGATTTATCTTAAGATTTTTATAACTTAAGATAGTTTTGTGAAACAGCAGTGGCAATCTTTATGATTGTCATAAGTTAGATCTTAAGATAAT
Unaligned ( gi|12 ): AAACATTAAAAAAAAAAAGATTTTCTAGGCGGAAGAAATCTGCATATCCCCCTCACTGCGTGCAATAGAATGTTATGTGTCTATTAAGTTTATATCAAAATCCAATATTGTAC
Unaligned ( gi|14 ): TGAATAAAGTTGTAATTTCTATCTTGAAACTTTATATTCATATGCCATTCTGCATAATTGAATTATTGTTGCAAAATAAATAA
Unaligned ( gi|15 ): GAAGTAGAAGGGTTGTGTAAACTATAAAATATCTTCATATCTTCCTCACTGCCGTGCAATAATAAAATCATTAATTAAATA
Unaligned ( gi|17 ): AGAATTTTATAACTTAAGATAGTTTTGTGAAACAGCAGTGGCAATCTTATGATTGTCATAAGTTAGATCTTAAGATAAT