lowQualScore : 1
lowQualScore : 2 2 2 2 2 2 6666666 4444 55 2 6 5555 22 777 5 33 9999
lowQualScore : . . . . . . ....... .... .. . . .... .. ... . .. ....
lowQualScore : 7 5 5 5 5 0 5555555 2222 55 5 6 3333 66 888 0 44 7777
consensus : CAG-GGC-TC-GAGC-TGTGAGTCGC-CATTTGCG-------CCAA----TGGCG--AA-AAA----AAT-TC-G-AAAGTG-G--C----GAAAAAAA
Reference ( gi|114743 ) : CAG-GGC-TC-GAGC-TGTGAGTCGC-CATTTGCG-------CCAA----TGGCG--AA-ACA----AAT-TT-G-AAAGTG-G--C----GAAAAAAA
gi|114745 : CAG-GGC-TC-GAGC-TGTGAGTCGC-CATTTGTG-------CCAA----TGGCG--AA-AAA----AAA-TT-G-AAAGTG-G--C----GAAAAAAA
gi|114744 : CAG-GGC-TC-GAGC-TGTGAGTCGC-CATTTGCG-------CCAA----TGGCG--AA-AAA----AAT-TC-T-AAATTG-G--C----GAAAAAAA
gi|114746 : CAG-GGC-TC-GAGC-TGTGAGTCGC-CATTTGCG-------GCCA----TGGCG--AA-AAA----AAT-TT-GAAAAGTG-G--C----GAAAAAAA
gi|114749 : CAG-GGC-TCTAAGC-TGTGAGTCGC-CATTTGCG-------CCAA----TGGCG---A-ACA----AAT-TC-A-AAAGTG-G--C----GAAAAAAA
gi|114748 : CAG-GGC-TC-GAGC-TGTGAGTCGC-CATTTGCG-------CCAA----TGGTG--AA-AAA----AAA-TC-T-TAAGTG-G--C----GAAAAAAA
gi|114747 : CAG-GGC-AC-GAGC-TGTGAGTCGC-CATTTGCG-------CCAA----TGGCG--AA-AAA----AAA-TC-A-AAATTG-G--C----GAAAAAAA
gi|114750 : CAG-GGC-TC-GAGC-TGTGAGTCGC-CATTTGTG-------CAAA----TGGCGAAAA-AAA----AAA-TT-G-AAAGTGAG--C----GAAAAAAA
gi|114751 : CAG-GGC-TC-GAGC-TGTGAGTCGCGCATTTGTG-------CAAA----TGGCGAAAA-AAA----AAA-TT-G-AAAGTGAG--C----GAAAAAAA
gi|114752 : CAG-GGTATC-GAGC-TGT-ATTCGC-CATTTGCC-------CCAA----TGGCG--AA-AAA----AAT-TT-G-AAAGTG-G--C----AAAAAA
gi|114753 : CAG-GGC-TC-GAGC-TGTGAGTCGC-CATTT--------------------GCG--AA-AAA----AAT-TTCT-TAAGTG-GCAC----GAAAAAAA
gi|114755 : CAG-AGC-TC-ACGC-TGCCGTTCGC-CATTTTCG-------CCAT----TGGCG--AA-AGA----ATC-TC-A-AAAATG-G--C----TACAGAAA
gi|114754 : CAGAGGC-TC-GGGAGTGTGAGTCGC-AATTTGCGAAAAAAATCAAAAAGTGGCG--AAGAAA----AAT-CT-T-AA-GTG-G--C----GAAAAGAA
gi|114756 : CAG-GGC-TC-ACGC-TGCCATTCGC-CATTTTCG-------CCAT----TGACG--AA-A-G----AATATC-A-AAAATG-G--CCATTGAAGAGAA
gi|114757 : G-GGC-TC-AAGC-TGTGAG----------GCG-------CAAA----TGGCG--AA-A-A----AAT-TT-G-AAAGTG-G--CGGG-GAAAAAAA
gi|114758 : -GGC-TC-GAGC-TGT-AGTC-C-TATTTGCG-------CCAA----GGCCG--AA-AAAAAAGAAT-CA-G-AAAGTG-G--C----GAAAACAA
gi|114759 : -TC-GAGC-TGT-ATTCGC-CATTTGC--------CCCA----TGGCG--AA-AAA----AAT-TT-GAAAAGTG-G--C----AAAAACAA
gi|114744 : TCGC-CATTGGCG-------CAAA----TGGCG--A
gi|114749 : cagggctcgagctgtgagTCGC-CATTGGCG-------CAAA----TGGCG--Aaaaaaattctaaattggcgaaaaaaa
gi|114747 : cagggctctaagctgtgagTCGC-CATTGGCG-------CAAA----TGGCG--Aacaaattcaaaagtggcgaaaaaaa
gi|114750 : cagggcacgagctgtgagTCGC-CATTTGCA-------CAAA----TGGCG--Aaaaaaaatcaaaattggcgaaaaaaa
Alignments
lowQualScore : 2 2 2 2 1 2 7777777 5555 888 5555 2 777 4 33 9999
lowQualScore : . . . . . . ....... .... ... .... . ... . .. ....
lowQualScore : 5 4 4 4 8 4 6666666 0000 222 0000 4 444 7 22 1111
consensus : CAG-GGC-TC-GAGC-TGTGAGTCGC-CATTTGCG-------CCAA----TGGCG---AAAAA----AA-TTCG-AAAGTG-G--C----GAAAAAAA
Reference ( family-949 ) : CAG-GGC-TC-GAGC-TGTGAGTCGC-CATTTGCG-------CCAA----TGGCG---AAAAA----AA-TTCG-AAAGTG-G--C----GAAAAAAA
gi|114743 : CAG-GGC-TC-GAGC-TGTGAGTCGC-CATTTGCG-------CCAA----TGGCG---AAACA----AA-TTTG-AAAGTG-G--C----GAAAAAAA
gi|114744 : CAG-GGC-TC-GAGC-TGTGAGTCGC-CATTTGCG-------CCAA----TGGCG---AAAAA----AA-TTCT-AAATTG-G--C----GAAAAAAA
gi|114745 : CAG-GGC-TC-GAGC-TGTGAGTCGC-CATTTGTG-------CCAA----TGGCG---AAAAA----AA-ATTG-AAAGTG-G--C----GAAAAAAA
gi|114746 : CAG-GGC-TC-GAGC-TGTGAGTCGC-CATTTGCG-------GCCA----TGGCG---AAAAA----AA-TTTGAAAAGTG-G--C----GAAAAAAA
gi|114747 : CAG-GGC-AC-GAGC-TGTGAGTCGC-CATTTGCG-------CCAA----TGGCG---AAAAA----AA-ATCA-AAATTG-G--C----GAAAAAAA
gi|114748 : CAG-GGC-TC-GAGC-TGTGAGTCGC-CATTTGCG-------CCAA----TGGTG---AAAAA----AA-ATCT-TAAGTG-G--C----GAAAAAAA
gi|114749 : CAG-GGC-TCTAAGC-TGTGAGTCGC-CATTTGCG-------CCAA----TGGCG----AACA----AA-TTCA-AAAGTG-G--C----GAAAAAAA
gi|114750 : CAG-GGC-TC-GAGC-TGTGAGTCGC-CATTTGTG-------CAAA----TGGCGAAAAAAAA----AA-TT-G-AAAGTGAG--C----GAAAAAAA
gi|114751 : CAG-GGC-TC-GAGC-TGTGAGTCGCGCATTTGTG-------CAAA----TGGCGAAAAAAAA----AA-TT-G-AAAGTGAG--C----GAAAAAAA
gi|114752 : CAG-GGTATC-GAGC-TGT-ATTCGC-CATTTGCC-------CCAA----TGGCG---AAAAA----AA-TTTG-AAAGTG-G--C----AAAAAA
gi|114753 : CAG-GGC-TC-GAGC-TGTGAGTCGC-CATTT--------------------GCG---AAAAA----AATTTCT-TAAGTG-GCAC----GAAAAAAA
gi|114754 : CAGAGGC-TC-GGGAGTGTGAGTCGC-AATTTGCGAAAAAAATCAAAAAGTGGCG---AAGAA----AA-ATCT-TAAGTG-G--C----GAAAAGAA
gi|114755 : CAG-AGC-TC-ACGC-TGCCGTTCGC-CATTTTCG-------CCAT----TGGCG---AAAGA----AT-CTCA-AAAATG-G--C----TACAGAAA
gi|114756 : CAG-GGC-TC-ACGC-TGCCATTCGC-CATTTTCG-------CCAT----TGACG---AAAGA----AT-ATCA-AAAATG-G--CCATTGAAGAGAA
gi|114757 : G-GGC-TC-AAGC-TGTGAG----------GCG-------CAAA----TGGCG---AAAAA----A--TTTG-AAAGTG-G--CGGG-GAAAAAAA
gi|114758 : -GGC-TC-GAGC-TGT-AGTC-C-TATTTGCG-------CCAA----GGCCG---AAAAAAAAGAA-TCAG-AAAGTG-G--C----GAAAACAA
gi|114759 : -TC-GAGC-TGT-ATTCGC-CATTTGC--------CCCA----TGGCG---AAAAA----AA-TTTGAAAAGTG-G--C----AAAAACAA
Alignments
lowQualScore : 2 2 2 2 1 2 7777777 5555 888 5555 2 777 4 33 9999
lowQualScore : . . . . . . ....... .... ... .... . ... . .. ....
lowQualScore : 5 4 4 4 8 4 6666666 0000 222 0000 4 444 7 22 1111
consensus : CAG-GGC-TC-GAGC-TGTGAGTCGC-CATTTGCG-------CCAA----TGGCG---AAAAA----AA-TTCG-AAAGTG-G--C----GAAAAAAA
Reference ( family-949 ) : CAG-GGC-TC-GAGC-TGTGAGTCGC-CATTTGCG-------CCAA----TGGCG---AAAAA----AA-TTCG-AAAGTG-G--C----GAAAAAAA
gi|114743 : CAG-GGC-TC-GAGC-TGTGAGTCGC-CATTTGCG-------CCAA----TGGCG---AAACA----AA-TTTG-AAAGTG-G--C----GAAAAAAA
gi|114744 : CAG-GGC-TC-GAGC-TGTGAGTCGC-CATTTGCG-------CCAA----TGGCG---AAAAA----AA-TTCT-AAATTG-G--C----GAAAAAAA
gi|114745 : CAG-GGC-TC-GAGC-TGTGAGTCGC-CATTTGTG-------CCAA----TGGCG---AAAAA----AA-ATTG-AAAGTG-G--C----GAAAAAAA
gi|114746 : CAG-GGC-TC-GAGC-TGTGAGTCGC-CATTTGCG-------GCCA----TGGCG---AAAAA----AA-TTTGAAAAGTG-G--C----GAAAAAAA
gi|114747 : CAG-GGC-AC-GAGC-TGTGAGTCGC-CATTTGCG-------CCAA----TGGCG---AAAAA----AA-ATCA-AAATTG-G--C----GAAAAAAA
gi|114748 : CAG-GGC-TC-GAGC-TGTGAGTCGC-CATTTGCG-------CCAA----TGGTG---AAAAA----AA-ATCT-TAAGTG-G--C----GAAAAAAA
gi|114749 : CAG-GGC-TCTAAGC-TGTGAGTCGC-CATTTGCG-------CCAA----TGGCG----AACA----AA-TTCA-AAAGTG-G--C----GAAAAAAA
gi|114750 : CAG-GGC-TC-GAGC-TGTGAGTCGC-CATTTGTG-------CAAA----TGGCGAAAAAAAA----AA-TT-G-AAAGTGAG--C----GAAAAAAA
gi|114751 : CAG-GGC-TC-GAGC-TGTGAGTCGCGCATTTGTG-------CAAA----TGGCGAAAAAAAA----AA-TT-G-AAAGTGAG--C----GAAAAAAA
gi|114752 : CAG-GGTATC-GAGC-TGT-ATTCGC-CATTTGCC-------CCAA----TGGCG---AAAAA----AA-TTTG-AAAGTG-G--C----AAAAAA
gi|114753 : CAG-GGC-TC-GAGC-TGTGAGTCGC-CATTT--------------------GCG---AAAAA----AATTTCT-TAAGTG-GCAC----GAAAAAAA
gi|114754 : CAGAGGC-TC-GGGAGTGTGAGTCGC-AATTTGCGAAAAAAATCAAAAAGTGGCG---AAGAA----AA-ATCT-TAAGTG-G--C----GAAAAGAA
gi|114755 : CAG-AGC-TC-ACGC-TGCCGTTCGC-CATTTTCG-------CCAT----TGGCG---AAAGA----AT-CTCA-AAAATG-G--C----TACAGAAA
gi|114756 : CAG-GGC-TC-ACGC-TGCCATTCGC-CATTTTCG-------CCAT----TGACG---AAAGA----AT-ATCA-AAAATG-G--CCATTGAAGAGAA
gi|114757 : G-GGC-TC-AAGC-TGTGAG----------GCG-------CAAA----TGGCG---AAAAA----A--TTTG-AAAGTG-G--CGGG-GAAAAAAA
gi|114758 : -GGC-TC-GAGC-TGT-AGTC-C-TATTTGCG-------CCAA----GGCCG---AAAAAAAAGAA-TCAG-AAAGTG-G--C----GAAAACAA
gi|114759 : -TC-GAGC-TGT-ATTCGC-CATTTGC--------CCCA----TGGCG---AAAAA----AA-TTTGAAAAGTG-G--C----AAAAACAA
blockSeqs : A A T G G G AAAAAAA AAAG AAA AAAG T TGA A CA CATT
blockSeqs : . . . . G . . . AAA . . TGA A . GGG
blockSeqs : . . . . G . . . . . . CT . . .
blockSeqs : . . . . G . . . . . . TG . . .
blockSeqs : . . . . G . . . . . . CA . . .
blockSeqs : . . . . G . . . . . . CT . . .
blockSeqs : . . . . G . . . . . . CA . . .
blockSeqs : . . . . G . . . . . . TG . . .
blockSeqs : . . . . G . . . . . . CT . . .
blockSeqs : . . . . G . . . . . . CT . . .
blockSeqs : . . . . C . . . . . . CA . . .
blockSeqs : . . . . C . . . . . . CA . . .
blockSeqs : . . . . G . . . . . . TG . . .
blockSeqs : . . . . . . . . . . . AG . . .
blockSeqs : . . . . . . . . . . . G . . .
blockSeqs : . . . . . . . . . . G . . .
blockSeqCons :
originalCons : CAG-GGC-TC-GAGC-TGTGAGTCGC-CATTTGCG-------CCAA----TGGCG---AAAAA----AA-TTCG-AAAGTG-G--C----GAAAAAAA
finalCons : CAG-GGC-TC-GAGC-TGTGAGTCGC-CATTTGCG-------CCAA----TGGCG---AAAAA----AA-TTCG-AAAGTG-G--C----GAAAAAAA
Alignments
lowQualScore : 2 2 2 2 1 2 7777777 5555 888 5555 2 777 4 33 9999
lowQualScore : . . . . . . ....... .... ... .... . ... . .. ....
lowQualScore : 5 4 4 4 8 4 6666666 0000 222 0000 4 444 7 22 1111
consensus : CAG-GGC-TC-GAGC-TGTGAGTCGC-CATTTGCG-------CCAA----TGGCG---AAAAA----AA-TTCG-AAAGTG-G--C----GAAAAAAA
Reference ( family-949 ) : CAG-GGC-TC-GAGC-TGTGAGTCGC-CATTTGCG-------CCAA----TGGCG---AAAAA----AA-TTCG-AAAGTG-G--C----GAAAAAAA
gi|114743 : CAG-GGC-TC-GAGC-TGTGAGTCGC-CATTTGCG-------CCAA----TGGCG---AAACA----AA-TTTG-AAAGTG-G--C----GAAAAAAA
gi|114744 : CAG-GGC-TC-GAGC-TGTGAGTCGC-CATTTGCG-------CCAA----TGGCG---AAAAA----AA-TTCT-AAATTG-G--C----GAAAAAAA
gi|114745 : CAG-GGC-TC-GAGC-TGTGAGTCGC-CATTTGTG-------CCAA----TGGCG---AAAAA----AA-ATTG-AAAGTG-G--C----GAAAAAAA
gi|114746 : CAG-GGC-TC-GAGC-TGTGAGTCGC-CATTTGCG-------GCCA----TGGCG---AAAAA----AA-TTTGAAAAGTG-G--C----GAAAAAAA
gi|114747 : CAG-GGC-AC-GAGC-TGTGAGTCGC-CATTTGCG-------CCAA----TGGCG---AAAAA----AA-ATCA-AAATTG-G--C----GAAAAAAA
gi|114748 : CAG-GGC-TC-GAGC-TGTGAGTCGC-CATTTGCG-------CCAA----TGGTG---AAAAA----AA-ATCT-TAAGTG-G--C----GAAAAAAA
gi|114749 : CAG-GGC-TCTAAGC-TGTGAGTCGC-CATTTGCG-------CCAA----TGGCG----AACA----AA-TTCA-AAAGTG-G--C----GAAAAAAA
gi|114750 : CAG-GGC-TC-GAGC-TGTGAGTCGC-CATTTGTG-------CAAA----TGGCGAAAAAAAA----AA-TT-G-AAAGTGAG--C----GAAAAAAA
gi|114751 : CAG-GGC-TC-GAGC-TGTGAGTCGCGCATTTGTG-------CAAA----TGGCGAAAAAAAA----AA-TT-G-AAAGTGAG--C----GAAAAAAA
gi|114752 : CAG-GGTATC-GAGC-TGT-ATTCGC-CATTTGCC-------CCAA----TGGCG---AAAAA----AA-TTTG-AAAGTG-G--C----AAAAAA
gi|114753 : CAG-GGC-TC-GAGC-TGTGAGTCGC-CATTT--------------------GCG---AAAAA----AATTTCT-TAAGTG-GCAC----GAAAAAAA
gi|114754 : CAGAGGC-TC-GGGAGTGTGAGTCGC-AATTTGCGAAAAAAATCAAAAAGTGGCG---AAGAA----AA-ATCT-TAAGTG-G--C----GAAAAGAA
gi|114755 : CAG-AGC-TC-ACGC-TGCCGTTCGC-CATTTTCG-------CCAT----TGGCG---AAAGA----AT-CTCA-AAAATG-G--C----TACAGAAA
gi|114756 : CAG-GGC-TC-ACGC-TGCCATTCGC-CATTTTCG-------CCAT----TGACG---AAAGA----AT-ATCA-AAAATG-G--CCATTGAAGAGAA
gi|114757 : G-GGC-TC-AAGC-TGTGAG----------GCG-------CAAA----TGGCG---AAAAA----A--TTTG-AAAGTG-G--CGGG-GAAAAAAA
gi|114758 : -GGC-TC-GAGC-TGT-AGTC-C-TATTTGCG-------CCAA----GGCCG---AAAAAAAAGAA-TCAG-AAAGTG-G--C----GAAAACAA
gi|114759 : -TC-GAGC-TGT-ATTCGC-CATTTGC--------CCCA----TGGCG---AAAAA----AA-TTTGAAAAGTG-G--C----AAAAACAA