lowQualScore : 11 111111
lowQualScore : 3 3 2 66 2 2 1 2 2 66666 2 2 11 0 0 000000 555 2 3
lowQualScore : . . . .. . . . . . ..... . . .. . . ...... ... . .
lowQualScore : 3 1 9 22 9 9 4 0 4 22222 5 5 66 2 9 333333 888 9 6
consensus : TTTTAAA-ATAT-ACATA-TCCT-AGATATG-TCACGC-AGTAAAAACTCAG-ATTCCGAAA-TGCCACCCA-----CTAAA-TTT-T-GATTCGAATCGA------TAGC---TGCACTT-AATCGT
Reference ( gi|32249 ) : TTTTAAA-ATAT-ACATA-TCCT-AGATATG-TCACGC-AGTAAAAACTCAG-ATTCCGAAA-TGCCACCCA-----CTAAA-TTT-T-TATTCGAATCGA------TAGC---TGCACTT-AATCGT
gi|32250 : TTTTAAA-ATAT-ACATA-TCCT-AGATATG-TCACGC-AGTAAAAACTCAG-ATTCCGAAA-TGCCACCCT-----CTAAA-TTT-T-GATTCGAATCGATACACGTAGC---TGTACTT-AATCGT
gi|32252 : TTTTAAA-ATAT-ACATA-TCCT-AGATATG-TCACGC-AGTAAAAACTCAA-ATTCCGAAG-CGCCACCCA-----CTAAA--TT-T-GATTCGAATTGA------TAGC---TGCACTT-AATCG
gi|32251 : TTTTTAA-TTAT-ACATA-TCCT-AGATATG-TCACGC-AGCAAAAACTCAG-ATTCCGAAA-TGCCACCCA-----CTAAA-TTT-CGTA-TCGAATCGA------TAGC---TGCACTT-AATCGT
gi|32253 : TTTTAAA-ATAT-ACATA--CCT--GATATG-TCACGC-AGTAAGAA-TCAG-ATTTTGAAT-TGCCGCCCA-----CTAAA-TTT-T-GATTCGACTCGA------TAGC---TGCACTT-AATCGT
gi|32254 : TTTTAAA-ATAT-ACATA-GCCT-GGATATG-TCACGT-AGTAAAATCTCAG-ATTCCGAAATTCCCATCCA-----CTAAA-TTT-T-GATTCGAATTGA------T
gi|32255 : TTTTAAA-ATAT-ACATAAGCCTCGGATATG-TCACGT-AGTAAAATCTCAG-ATTCCGAAA-TCCCATCCA-----CTAAATTTT-T-TATTCGAATTGA------T-----------TT-AATCGT
gi|32257 : TTTTAAA-ATATAATATA-TTCT--GGTATG-TCACGC-AGTAAAAACTCAGAATTCCGAAA-TGATACCCA-----CTAAA-GTGAA-TA-TCGAAT-GA------TAG
gi|32258 : TTTTAAA-ATAT-ACATA-TCCT-AGATATA-TCAAGC-AGTAAAAACT-AG-ATTCCGAAA-T
gi|32259 : TTTTAAA-ATAT-ACATA-GCCT-GGATATGAGCACGT-AGTAAAATCTTA--ATTCCGAAA-TG-CA-CCA-----C-AAA--TT-T-TA--CGAATTGA------T
gi|32256 : TTTTAAA-TTAT-ACATA-TCCT-AGATATG-TCACGC-AGTAAAAACT-AG-AT
gi|32260 : TTTAAC-ATAT-A--TA-TCCT-AGATATG-TCACAC-AATAGAAACTCAG-ACGCCGA
gi|32261 : TTAAATATAT-ACATA-TCCT-GGATATG--CACGCAAGTAATAACT-AG-ATTCGGAAA-TGCCACGCACTAGCCTAAA-TTT-G-AATTCGAATCGAT-----TAGCTTTTGCACTT-AATC
gi|32262 : -ACATA-TCCT-GGATATG-CCACGC-AGTAAAAACTCAG-ATTTCGAAA-TGTCACCCA-----CTAAA-TTT-T-GATTCGAA
gi|32263 : ATA-TCCT-AGATATG-TCACAC-AGTAAAAACTCAA-ACGCCGA
gi|32264 : AAATCAG-ATTCCGAAA-TGCCACCCA-----CTAAA-TTT-C-GATTCGAATCGA------TAGC---TGCACTTAAATCGT
gi|32265 : ACTTA--ATTCCGAAA-TGCCACACA-----CTAAA-TTT-T-GATTTGAATCGA------TAGC---TGTACTT-ACTCAT
gi|32266 : -ATTCCAAAA-TGCCACCCA-----CTAA--TTT-T-GATTCGAATCGA------TAGC---TGTACTT-AATCGT
gi|32267 : -ATTCCGAAC-TGCCACCTA-----CTAAA-TTT-T-GATTCCAGTCGA------TAGC---TGTACTT-AAT
gi|32268 : -ATTCCGAAA-TGCCACCCA-----CTAAA-TTT-T-GATTTGAAT-GA------TAGC---TGTA
gi|32269 : -ATTCCGAAA-TACCACCTA-----CTAAA-TTT-G-GAT-----TCGA------TAGC---TG----T-AATCAT
Alignments
lowQualScore : 3 2 2 55 2 2 0 1 2 55555 2 2 2 0 999999 555 1 3
lowQualScore : . . . .. . . . . . ..... . . . . ...... ... . .
lowQualScore : 1 9 7 22 7 7 7 9 2 99999 4 4 4 2 777777 444 9 3
consensus : TTTTAAA-ATAT-ACATA-TCCT-AGATATG-TCACGC-AGTAAAAACTCAG-ATTCCGAAA-TGCCACCCA-----CTAAA-TTTTG-AT-TCGAATCGA------TAGC---TGCACTT-AATCGT
Reference ( family-811 ) : TTTTAAA-ATAT-ACATA-TCCT-AGATATG-TCACGC-AGTAAAAACTCAG-ATTCCGAAA-TGCCACCCA-----CTAAA-TTTTG-AT-TCGAATCGA------TAGC---TGCACTT-AATCGT
gi|32249 : TTTTAAA-ATAT-ACATA-TCCT-AGATATG-TCACGC-AGTAAAAACTCAG-ATTCCGAAA-TGCCACCCA-----CTAAA-TTTTT-AT-TCGAATCGA------TAGC---TGCACTT-AATCGT
gi|32250 : TTTTAAA-ATAT-ACATA-TCCT-AGATATG-TCACGC-AGTAAAAACTCAG-ATTCCGAAA-TGCCACCCT-----CTAAA-TTTTG-AT-TCGAATCGATACACGTAGC---TGTACTT-AATCGT
gi|32251 : TTTTTAA-TTAT-ACATA-TCCT-AGATATG-TCACGC-AGCAAAAACTCAG-ATTCCGAAA-TGCCACCCA-----CTAAA-TTTCG-TA-TCGAATCGA------TAGC---TGCACTT-AATCGT
gi|32252 : TTTTAAA-ATAT-ACATA-TCCT-AGATATG-TCACGC-AGTAAAAACTCAA-ATTCCGAAG-CGCCACCCA-----CTAAA--TTTG-AT-TCGAATTGA------TAGC---TGCACTT-AATCG
gi|32253 : TTTTAAA-ATAT-ACATA--CCT--GATATG-TCACGC-AGTAAGAA-TCAG-ATTTTGAAT-TGCCGCCCA-----CTAAA-TTTTG-AT-TCGACTCGA------TAGC---TGCACTT-AATCGT
gi|32254 : TTTTAAA-ATAT-ACATA-GCCT-GGATATG-TCACGT-AGTAAAATCTCAG-ATTCCGAAATTCCCATCCA-----CTAAA-TTTTG-AT-TCGAATTGA------T
gi|32255 : TTTTAAA-ATAT-ACATAAGCCTCGGATATG-TCACGT-AGTAAAATCTCAG-ATTCCGAAA-TCCCATCCA-----CTAAATTTTTT-AT-TCGAATTGA------T-----------TT-AATCGT
gi|32256 : TTTTAAA-TTAT-ACATA-TCCT-AGATATG-TCACGC-AGTAAAAACT-AG-AT
gi|32257 : TTTTAAA-ATATAATATA-TTCT--GGTATG-TCACGC-AGTAAAAACTCAGAATTCCGAAA-TGATACCCA-----CTAAA---GTGAATATCGAAT-GA------TAG
gi|32258 : TTTTAAA-ATAT-ACATA-TCCT-AGATATA-TCAAGC-AGTAAAAACT-AG-ATTCCGAAA-T
gi|32259 : TTTTAAA-ATAT-ACATA-GCCT-GGATATGAGCACGT-AGTAAAATCTTA--ATTCCGAAA-TG-CA-CCA-----C-AAA-TTTTA-----CGAATTGA------T
gi|32260 : TTTAAC-ATAT-A--TA-TCCT-AGATATG-TCACAC-AATAGAAACTCAG-ACGCCGA
gi|32261 : TTAAATATAT-ACATA-TCCT-GGATATG--CACGCAAGTAATAACT-AG-ATTCGGAAA-TGCCACGCACTAGCCTAAA-TTTGA-AT-TCGAATCGAT-----TAGCTTTTGCACTT-AATC
gi|32262 : -ACATA-TCCT-GGATATG-CCACGC-AGTAAAAACTCAG-ATTTCGAAA-TGTCACCCA-----CTAAA-TTTTG-AT-TCGAA
gi|32263 : ATA-TCCT-AGATATG-TCACAC-AGTAAAAACTCAA-ACGCCGA
gi|32264 : AAATCAG-ATTCCGAAA-TGCCACCCA-----CTAAA-TTTCG-AT-TCGAATCGA------TAGC---TGCACTTAAATCGT
gi|32265 : ACTTA--ATTCCGAAA-TGCCACACA-----CTAAA-TTTTG-AT-TTGAATCGA------TAGC---TGTACTT-ACTCAT
gi|32266 : -ATTCCAAAA-TGCCACCCA-----CTAA--TTTTG-AT-TCGAATCGA------TAGC---TGTACTT-AATCGT
gi|32267 : -ATTCCGAAC-TGCCACCTA-----CTAAA-TTTTG-AT-TCCAGTCGA------TAGC---TGTACTT-AAT
gi|32268 : -ATTCCGAAA-TGCCACCCA-----CTAAA-TTTTG-AT-TTGAAT-GA------TAGC---TGTA
gi|32269 : -ATTCCGAAA-TACCACCTA-----CTAAA-TTTGG-AT------TCGA------TAGC---TG----T-AATCAT
Alignments
lowQualScore : 3 2 2 55 2 2 0 1 2 55555 2 2 2 0 999999 555 1 3
lowQualScore : . . . .. . . . . . ..... . . . . ...... ... . .
lowQualScore : 1 9 7 22 7 7 7 9 2 99999 4 4 4 2 777777 444 9 3
consensus : TTTTAAA-ATAT-ACATA-TCCT-AGATATG-TCACGC-AGTAAAAACTCAG-ATTCCGAAA-TGCCACCCA-----CTAAA-TTTTG-AT-TCGAATCGA------TAGC---TGCACTT-AATCGT
Reference ( family-811 ) : TTTTAAA-ATAT-ACATA-TCCT-AGATATG-TCACGC-AGTAAAAACTCAG-ATTCCGAAA-TGCCACCCA-----CTAAA-TTTTG-AT-TCGAATCGA------TAGC---TGCACTT-AATCGT
gi|32249 : TTTTAAA-ATAT-ACATA-TCCT-AGATATG-TCACGC-AGTAAAAACTCAG-ATTCCGAAA-TGCCACCCA-----CTAAA-TTTTT-AT-TCGAATCGA------TAGC---TGCACTT-AATCGT
gi|32250 : TTTTAAA-ATAT-ACATA-TCCT-AGATATG-TCACGC-AGTAAAAACTCAG-ATTCCGAAA-TGCCACCCT-----CTAAA-TTTTG-AT-TCGAATCGATACACGTAGC---TGTACTT-AATCGT
gi|32251 : TTTTTAA-TTAT-ACATA-TCCT-AGATATG-TCACGC-AGCAAAAACTCAG-ATTCCGAAA-TGCCACCCA-----CTAAA-TTTCG-TA-TCGAATCGA------TAGC---TGCACTT-AATCGT
gi|32252 : TTTTAAA-ATAT-ACATA-TCCT-AGATATG-TCACGC-AGTAAAAACTCAA-ATTCCGAAG-CGCCACCCA-----CTAAA--TTTG-AT-TCGAATTGA------TAGC---TGCACTT-AATCG
gi|32253 : TTTTAAA-ATAT-ACATA--CCT--GATATG-TCACGC-AGTAAGAA-TCAG-ATTTTGAAT-TGCCGCCCA-----CTAAA-TTTTG-AT-TCGACTCGA------TAGC---TGCACTT-AATCGT
gi|32254 : TTTTAAA-ATAT-ACATA-GCCT-GGATATG-TCACGT-AGTAAAATCTCAG-ATTCCGAAATTCCCATCCA-----CTAAA-TTTTG-AT-TCGAATTGA------T
gi|32255 : TTTTAAA-ATAT-ACATAAGCCTCGGATATG-TCACGT-AGTAAAATCTCAG-ATTCCGAAA-TCCCATCCA-----CTAAATTTTTT-AT-TCGAATTGA------T-----------TT-AATCGT
gi|32256 : TTTTAAA-TTAT-ACATA-TCCT-AGATATG-TCACGC-AGTAAAAACT-AG-AT
gi|32257 : TTTTAAA-ATATAATATA-TTCT--GGTATG-TCACGC-AGTAAAAACTCAGAATTCCGAAA-TGATACCCA-----CTAAA---GTGAATATCGAAT-GA------TAG
gi|32258 : TTTTAAA-ATAT-ACATA-TCCT-AGATATA-TCAAGC-AGTAAAAACT-AG-ATTCCGAAA-T
gi|32259 : TTTTAAA-ATAT-ACATA-GCCT-GGATATGAGCACGT-AGTAAAATCTTA--ATTCCGAAA-TG-CA-CCA-----C-AAA-TTTTA-----CGAATTGA------T
gi|32260 : TTTAAC-ATAT-A--TA-TCCT-AGATATG-TCACAC-AATAGAAACTCAG-ACGCCGA
gi|32261 : TTAAATATAT-ACATA-TCCT-GGATATG--CACGCAAGTAATAACT-AG-ATTCGGAAA-TGCCACGCACTAGCCTAAA-TTTGA-AT-TCGAATCGAT-----TAGCTTTTGCACTT-AATC
gi|32262 : -ACATA-TCCT-GGATATG-CCACGC-AGTAAAAACTCAG-ATTTCGAAA-TGTCACCCA-----CTAAA-TTTTG-AT-TCGAA
gi|32263 : ATA-TCCT-AGATATG-TCACAC-AGTAAAAACTCAA-ACGCCGA
gi|32264 : AAATCAG-ATTCCGAAA-TGCCACCCA-----CTAAA-TTTCG-AT-TCGAATCGA------TAGC---TGCACTTAAATCGT
gi|32265 : ACTTA--ATTCCGAAA-TGCCACACA-----CTAAA-TTTTG-AT-TTGAATCGA------TAGC---TGTACTT-ACTCAT
gi|32266 : -ATTCCAAAA-TGCCACCCA-----CTAA--TTTTG-AT-TCGAATCGA------TAGC---TGTACTT-AATCGT
gi|32267 : -ATTCCGAAC-TGCCACCTA-----CTAAA-TTTTG-AT-TCCAGTCGA------TAGC---TGTACTT-AAT
gi|32268 : -ATTCCGAAA-TGCCACCCA-----CTAAA-TTTTG-AT-TTGAAT-GA------TAGC---TGTA
gi|32269 : -ATTCCGAAA-TACCACCTA-----CTAAA-TTTGG-AT------TCGA------TAGC---TG----T-AATCAT
blockSeqs : T A A CG A A A T CTAGC T A A TACACG TTT T A
blockSeqs : . . . A . . . . . . . . T . C .
blockSeqs : . . . A . . . . . . . . . . C .
blockSeqs : . . . A . . . . . . . . . . C .
blockSeqs : . . . G . . . . . . . . . . C .
blockSeqs : . . . A . . . . . . . . . . C .
blockSeqs : . . . A . . . . . . . . . . T .
blockSeqs : . . . G . . . . . . . . . . T .
blockSeqs : . . . A . . . . . . . . . . T .
blockSeqs : . . . G . . . . . . . . . . T .
blockSeqs : . . . G . . . . . . . . . . . .
blockSeqs : . . . A . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . .
blockSeqs : . .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqCons :
originalCons : TTTTAAA-ATAT-ACATA-TCCT-AGATATG-TCACGC-AGTAAAAACTCAG-ATTCCGAAA-TGCCACCCA-----CTAAA-TTTTG-AT-TCGAATCGA------TAGC---TGCACTT-AATCGT
finalCons : TTTTAAA-ATAT-ACATA-TCCT-AGATATG-TCACGC-AGTAAAAACTCAG-ATTCCGAAA-TGCCACCCA-----CTAAA-TTTTG-AT-TCGAATCGA------TAGC---TGCACTT-AATCGT
Alignments
lowQualScore : 3 2 2 55 2 2 0 1 2 55555 2 2 2 0 999999 555 1 3
lowQualScore : . . . .. . . . . . ..... . . . . ...... ... . .
lowQualScore : 1 9 7 22 7 7 7 9 2 99999 4 4 4 2 777777 444 9 3
consensus : TTTTAAA-ATAT-ACATA-TCCT-AGATATG-TCACGC-AGTAAAAACTCAG-ATTCCGAAA-TGCCACCCA-----CTAAA-TTTTG-AT-TCGAATCGA------TAGC---TGCACTT-AATCGT
Reference ( family-811 ) : TTTTAAA-ATAT-ACATA-TCCT-AGATATG-TCACGC-AGTAAAAACTCAG-ATTCCGAAA-TGCCACCCA-----CTAAA-TTTTG-AT-TCGAATCGA------TAGC---TGCACTT-AATCGT
gi|32249 : TTTTAAA-ATAT-ACATA-TCCT-AGATATG-TCACGC-AGTAAAAACTCAG-ATTCCGAAA-TGCCACCCA-----CTAAA-TTTTT-AT-TCGAATCGA------TAGC---TGCACTT-AATCGT
gi|32250 : TTTTAAA-ATAT-ACATA-TCCT-AGATATG-TCACGC-AGTAAAAACTCAG-ATTCCGAAA-TGCCACCCT-----CTAAA-TTTTG-AT-TCGAATCGATACACGTAGC---TGTACTT-AATCGT
gi|32251 : TTTTTAA-TTAT-ACATA-TCCT-AGATATG-TCACGC-AGCAAAAACTCAG-ATTCCGAAA-TGCCACCCA-----CTAAA-TTTCG-TA-TCGAATCGA------TAGC---TGCACTT-AATCGT
gi|32252 : TTTTAAA-ATAT-ACATA-TCCT-AGATATG-TCACGC-AGTAAAAACTCAA-ATTCCGAAG-CGCCACCCA-----CTAAA--TTTG-AT-TCGAATTGA------TAGC---TGCACTT-AATCG
gi|32253 : TTTTAAA-ATAT-ACATA--CCT--GATATG-TCACGC-AGTAAGAA-TCAG-ATTTTGAAT-TGCCGCCCA-----CTAAA-TTTTG-AT-TCGACTCGA------TAGC---TGCACTT-AATCGT
gi|32254 : TTTTAAA-ATAT-ACATA-GCCT-GGATATG-TCACGT-AGTAAAATCTCAG-ATTCCGAAATTCCCATCCA-----CTAAA-TTTTG-AT-TCGAATTGA------T
gi|32255 : TTTTAAA-ATAT-ACATAAGCCTCGGATATG-TCACGT-AGTAAAATCTCAG-ATTCCGAAA-TCCCATCCA-----CTAAATTTTTT-AT-TCGAATTGA------T-----------TT-AATCGT
gi|32256 : TTTTAAA-TTAT-ACATA-TCCT-AGATATG-TCACGC-AGTAAAAACT-AG-AT
gi|32257 : TTTTAAA-ATATAATATA-TTCT--GGTATG-TCACGC-AGTAAAAACTCAGAATTCCGAAA-TGATACCCA-----CTAAA---GTGAATATCGAAT-GA------TAG
gi|32258 : TTTTAAA-ATAT-ACATA-TCCT-AGATATA-TCAAGC-AGTAAAAACT-AG-ATTCCGAAA-T
gi|32259 : TTTTAAA-ATAT-ACATA-GCCT-GGATATGAGCACGT-AGTAAAATCTTA--ATTCCGAAA-TG-CA-CCA-----C-AAA-TTTTA-----CGAATTGA------T
gi|32260 : TTTAAC-ATAT-A--TA-TCCT-AGATATG-TCACAC-AATAGAAACTCAG-ACGCCGA
gi|32261 : TTAAATATAT-ACATA-TCCT-GGATATG--CACGCAAGTAATAACT-AG-ATTCGGAAA-TGCCACGCACTAGCCTAAA-TTTGA-AT-TCGAATCGAT-----TAGCTTTTGCACTT-AATC
gi|32262 : -ACATA-TCCT-GGATATG-CCACGC-AGTAAAAACTCAG-ATTTCGAAA-TGTCACCCA-----CTAAA-TTTTG-AT-TCGAA
gi|32263 : ATA-TCCT-AGATATG-TCACAC-AGTAAAAACTCAA-ACGCCGA
gi|32264 : AAATCAG-ATTCCGAAA-TGCCACCCA-----CTAAA-TTTCG-AT-TCGAATCGA------TAGC---TGCACTTAAATCGT
gi|32265 : ACTTA--ATTCCGAAA-TGCCACACA-----CTAAA-TTTTG-AT-TTGAATCGA------TAGC---TGTACTT-ACTCAT
gi|32266 : -ATTCCAAAA-TGCCACCCA-----CTAA--TTTTG-AT-TCGAATCGA------TAGC---TGTACTT-AATCGT
gi|32267 : -ATTCCGAAC-TGCCACCTA-----CTAAA-TTTTG-AT-TCCAGTCGA------TAGC---TGTACTT-AAT
gi|32268 : -ATTCCGAAA-TGCCACCCA-----CTAAA-TTTTG-AT-TTGAAT-GA------TAGC---TGTA
gi|32269 : -ATTCCGAAA-TACCACCTA-----CTAAA-TTTGG-AT------TCGA------TAGC---TG----T-AATCAT