gannet/Atumefaciens/20181015_vcf_split

Individual VCF files, originally split from SNP.TRSdp5g95FnDNAmaf05.vcf.gz.

Original file (15GB): http://gannet.fish.washington.edu/seashell/eog/files/VCF_files/SNP.TRSdp5g95FnDNAmaf05.vcf.gz

See notebook to see how files were generated:

http://onsnetwork.org/kubu4/2018/10/15/vcf-splitting-with-bcftools

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FILES:

- bcftools.sh: Bash script used to split sorted, bzipped/indexed (using tabix), AN/AC-filled, VCF file.

- *.SAMPLE_NAME.vcf.gz: Individual VCF files originating from SNP.TRSdp5g95FnDNAmaf05.sorted.ANACfill.vcf.gz.

- SNP.TRSdp5g95FnDNAmaf05.sorted.ANACfill.vcf.gz: Sorted VCF file, with AN and AC tags filled in via bcftools fill-AN-AC plugin.

- SNP.TRSdp5g95FnDNAmaf05.sorted.vcf.gz: Sorted VCF file.

- SNP.TRSdp5g95FnDNAmaf05.sorted.vcf.gz.tbi: Indexed, sorted VCF file, generated using tabix.